Multiple sequence alignment - TraesCS7A01G486300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G486300 chr7A 100.000 9506 0 0 1 9506 676592905 676583400 0.000000e+00 17555.0
1 TraesCS7A01G486300 chr7A 97.615 2180 39 7 6028 8198 677228354 677226179 0.000000e+00 3725.0
2 TraesCS7A01G486300 chr7A 97.284 1436 36 2 3475 4909 677229896 677228463 0.000000e+00 2433.0
3 TraesCS7A01G486300 chr7A 93.574 1027 50 11 5013 6027 454014268 454013246 0.000000e+00 1517.0
4 TraesCS7A01G486300 chr7A 90.166 1027 91 8 5013 6031 690693702 690694726 0.000000e+00 1328.0
5 TraesCS7A01G486300 chr7A 85.960 349 45 4 8876 9222 45326345 45325999 4.190000e-98 370.0
6 TraesCS7A01G486300 chr7A 86.567 335 41 4 8889 9221 622257260 622256928 5.420000e-97 366.0
7 TraesCS7A01G486300 chr7A 88.517 209 20 3 4417 4623 730748698 730748492 5.700000e-62 250.0
8 TraesCS7A01G486300 chr7A 91.195 159 13 1 6028 6185 111845467 111845309 2.080000e-51 215.0
9 TraesCS7A01G486300 chr7A 100.000 87 0 0 4906 4992 677228436 677228350 2.750000e-35 161.0
10 TraesCS7A01G486300 chr7A 78.767 146 27 4 3472 3615 527969592 527969735 2.830000e-15 95.3
11 TraesCS7A01G486300 chr7A 85.714 70 8 2 8129 8198 614843247 614843314 1.320000e-08 73.1
12 TraesCS7A01G486300 chr3A 96.492 2195 54 11 6026 8199 642271542 642273734 0.000000e+00 3605.0
13 TraesCS7A01G486300 chr3A 97.467 1461 35 1 796 2256 580560713 580562171 0.000000e+00 2492.0
14 TraesCS7A01G486300 chr3A 96.486 1480 40 7 6026 7497 644497266 644495791 0.000000e+00 2435.0
15 TraesCS7A01G486300 chr3A 97.301 1408 33 4 6794 8198 707237471 707236066 0.000000e+00 2385.0
16 TraesCS7A01G486300 chr3A 95.251 1453 44 11 3474 4909 642269991 642271435 0.000000e+00 2278.0
17 TraesCS7A01G486300 chr3A 94.842 1454 48 13 3473 4909 644498816 644497373 0.000000e+00 2244.0
18 TraesCS7A01G486300 chr3A 97.154 1230 34 1 2247 3475 580563364 580564593 0.000000e+00 2076.0
19 TraesCS7A01G486300 chr3A 96.763 865 26 2 4046 4909 707239161 707238298 0.000000e+00 1441.0
20 TraesCS7A01G486300 chr3A 90.351 1026 90 7 5010 6027 721425544 721426568 0.000000e+00 1338.0
21 TraesCS7A01G486300 chr3A 90.341 1025 91 6 5010 6027 721443626 721444649 0.000000e+00 1338.0
22 TraesCS7A01G486300 chr3A 90.420 1023 77 20 5013 6027 336815795 336816804 0.000000e+00 1327.0
23 TraesCS7A01G486300 chr3A 96.756 709 22 1 7493 8200 644482628 644481920 0.000000e+00 1181.0
24 TraesCS7A01G486300 chr3A 96.250 720 20 4 6028 6740 707238189 707237470 0.000000e+00 1173.0
25 TraesCS7A01G486300 chr3A 92.916 734 41 2 2167 2889 462636809 462637542 0.000000e+00 1057.0
26 TraesCS7A01G486300 chr3A 93.407 637 32 3 8595 9222 580565268 580565903 0.000000e+00 935.0
27 TraesCS7A01G486300 chr3A 95.172 290 12 2 8932 9221 115128622 115128909 3.130000e-124 457.0
28 TraesCS7A01G486300 chr3A 94.643 280 10 3 3741 4017 707239436 707239159 6.820000e-116 429.0
29 TraesCS7A01G486300 chr3A 94.928 276 11 1 3474 3749 707247654 707247382 6.820000e-116 429.0
30 TraesCS7A01G486300 chr3A 87.608 347 41 2 8876 9221 620656265 620655920 1.490000e-107 401.0
31 TraesCS7A01G486300 chr3A 100.000 87 0 0 4906 4992 707238271 707238185 2.750000e-35 161.0
32 TraesCS7A01G486300 chr3A 98.851 87 1 0 4906 4992 644497346 644497260 1.280000e-33 156.0
33 TraesCS7A01G486300 chr3A 97.701 87 2 0 4906 4992 642271462 642271548 5.950000e-32 150.0
34 TraesCS7A01G486300 chr3A 84.034 119 19 0 3474 3592 675825295 675825413 2.170000e-21 115.0
35 TraesCS7A01G486300 chr7D 96.369 1680 55 3 1799 3475 554514445 554516121 0.000000e+00 2760.0
36 TraesCS7A01G486300 chr7D 96.259 1684 53 3 1799 3475 554508170 554509850 0.000000e+00 2752.0
37 TraesCS7A01G486300 chr7D 96.250 1680 55 4 1799 3475 551475828 551474154 0.000000e+00 2747.0
38 TraesCS7A01G486300 chr7D 90.798 978 61 18 1 962 551478423 551477459 0.000000e+00 1280.0
39 TraesCS7A01G486300 chr7D 89.089 999 65 19 1 962 554505594 554506585 0.000000e+00 1201.0
40 TraesCS7A01G486300 chr7D 93.572 809 42 3 8194 8992 554516118 554516926 0.000000e+00 1197.0
41 TraesCS7A01G486300 chr7D 93.572 809 39 5 8194 8992 554509847 554510652 0.000000e+00 1194.0
42 TraesCS7A01G486300 chr7D 88.493 982 79 20 1 962 221556139 221555172 0.000000e+00 1157.0
43 TraesCS7A01G486300 chr7D 95.964 669 24 2 8197 8863 551474154 551473487 0.000000e+00 1083.0
44 TraesCS7A01G486300 chr7D 86.400 1000 88 19 1 962 516879344 516880333 0.000000e+00 1050.0
45 TraesCS7A01G486300 chr7D 85.399 589 72 12 7247 7826 61853437 61852854 4.910000e-167 599.0
46 TraesCS7A01G486300 chr7D 90.278 432 36 6 6693 7121 61853923 61853495 2.320000e-155 560.0
47 TraesCS7A01G486300 chr7D 87.526 489 56 3 4425 4909 634806246 634806733 2.320000e-155 560.0
48 TraesCS7A01G486300 chr7D 96.853 286 8 1 9222 9506 65475178 65475463 2.400000e-130 477.0
49 TraesCS7A01G486300 chr7D 96.853 286 8 1 9222 9506 231309014 231309299 2.400000e-130 477.0
50 TraesCS7A01G486300 chr7D 96.853 286 8 1 9222 9506 269562451 269562736 2.400000e-130 477.0
51 TraesCS7A01G486300 chr7D 88.448 277 31 1 6349 6624 61854209 61853933 5.500000e-87 333.0
52 TraesCS7A01G486300 chr7D 90.909 55 4 1 8145 8199 594197627 594197574 1.320000e-08 73.1
53 TraesCS7A01G486300 chr7D 86.567 67 5 3 8135 8201 237266789 237266727 4.760000e-08 71.3
54 TraesCS7A01G486300 chr1D 95.536 1680 54 3 1799 3475 268491940 268493601 0.000000e+00 2667.0
55 TraesCS7A01G486300 chr1D 90.010 1021 94 7 5013 6027 298583057 298582039 0.000000e+00 1314.0
56 TraesCS7A01G486300 chr1D 90.705 979 63 16 1 962 268488783 268489750 0.000000e+00 1279.0
57 TraesCS7A01G486300 chr1D 90.853 809 42 10 8194 8992 268493598 268494384 0.000000e+00 1055.0
58 TraesCS7A01G486300 chr1D 97.203 286 7 1 9222 9506 407520968 407521253 5.160000e-132 483.0
59 TraesCS7A01G486300 chr1D 96.853 286 8 1 9222 9506 55582034 55581749 2.400000e-130 477.0
60 TraesCS7A01G486300 chr6A 94.163 1679 75 6 1799 3475 595796354 595798011 0.000000e+00 2536.0
61 TraesCS7A01G486300 chr6A 93.572 1338 61 6 2142 3475 592958638 592957322 0.000000e+00 1971.0
62 TraesCS7A01G486300 chr6A 92.055 1095 62 5 1799 2888 159242086 159241012 0.000000e+00 1517.0
63 TraesCS7A01G486300 chr6A 87.755 343 38 4 8886 9226 137908323 137908663 1.920000e-106 398.0
64 TraesCS7A01G486300 chr1A 92.985 1682 79 9 1799 3475 165373943 165372296 0.000000e+00 2416.0
65 TraesCS7A01G486300 chr1A 89.176 850 61 19 1 832 420429181 420430017 0.000000e+00 1031.0
66 TraesCS7A01G486300 chr1A 88.732 852 59 22 1 832 422376747 422375913 0.000000e+00 1007.0
67 TraesCS7A01G486300 chr1A 82.888 561 76 12 1 549 310697516 310698068 3.990000e-133 486.0
68 TraesCS7A01G486300 chr1A 94.505 91 5 0 2143 2233 102764888 102764978 3.580000e-29 141.0
69 TraesCS7A01G486300 chr1A 96.341 82 3 0 2145 2226 552052782 552052701 1.670000e-27 135.0
70 TraesCS7A01G486300 chr1A 91.379 58 3 2 8141 8197 495738896 495738952 2.850000e-10 78.7
71 TraesCS7A01G486300 chr1A 85.507 69 4 6 8140 8205 20547752 20547817 6.160000e-07 67.6
72 TraesCS7A01G486300 chr2A 92.938 1685 77 13 1799 3475 95132365 95130715 0.000000e+00 2414.0
73 TraesCS7A01G486300 chr2A 90.225 1023 92 7 5013 6028 51026465 51025444 0.000000e+00 1328.0
74 TraesCS7A01G486300 chr2A 90.411 1022 80 17 5013 6027 469828132 469827122 0.000000e+00 1328.0
75 TraesCS7A01G486300 chr2A 90.323 1023 83 15 5013 6029 469822364 469821352 0.000000e+00 1327.0
76 TraesCS7A01G486300 chr2A 85.674 356 42 7 8873 9226 594176937 594177285 5.420000e-97 366.0
77 TraesCS7A01G486300 chr2A 89.937 159 14 2 6028 6185 69904007 69903850 4.500000e-48 204.0
78 TraesCS7A01G486300 chr2A 82.143 140 23 2 3462 3599 732204542 732204681 1.680000e-22 119.0
79 TraesCS7A01G486300 chr2A 82.308 130 23 0 3474 3603 327264559 327264430 7.800000e-21 113.0
80 TraesCS7A01G486300 chr7B 92.590 1687 78 15 1799 3475 83561358 83563007 0.000000e+00 2379.0
81 TraesCS7A01G486300 chr7B 94.334 353 13 2 8876 9222 656621911 656621560 1.410000e-147 534.0
82 TraesCS7A01G486300 chr7B 82.505 503 61 7 4417 4909 741352168 741351683 5.310000e-112 416.0
83 TraesCS7A01G486300 chr7B 87.692 65 7 1 8137 8201 151741834 151741897 3.680000e-09 75.0
84 TraesCS7A01G486300 chr3D 93.450 1313 56 8 2167 3475 52181364 52180078 0.000000e+00 1921.0
85 TraesCS7A01G486300 chr3D 90.012 801 52 9 8220 8995 542663093 542662296 0.000000e+00 1011.0
86 TraesCS7A01G486300 chr3D 92.964 668 30 3 8220 8871 111998913 111999579 0.000000e+00 957.0
87 TraesCS7A01G486300 chr3D 96.853 286 8 1 9222 9506 368266225 368265940 2.400000e-130 477.0
88 TraesCS7A01G486300 chr3D 96.853 286 8 1 9222 9506 452298910 452299195 2.400000e-130 477.0
89 TraesCS7A01G486300 chr3D 83.721 86 7 6 8130 8212 375871711 375871630 3.680000e-09 75.0
90 TraesCS7A01G486300 chr2D 93.242 1095 45 3 1799 2886 574647885 574646813 0.000000e+00 1585.0
91 TraesCS7A01G486300 chr2D 88.706 850 68 17 1 832 471791430 471790591 0.000000e+00 1013.0
92 TraesCS7A01G486300 chr2D 91.125 631 40 9 1 623 56852257 56852879 0.000000e+00 841.0
93 TraesCS7A01G486300 chr2D 94.318 352 14 1 8876 9221 581856539 581856188 1.410000e-147 534.0
94 TraesCS7A01G486300 chr2D 97.203 286 7 1 9222 9506 112238627 112238342 5.160000e-132 483.0
95 TraesCS7A01G486300 chr2D 90.506 158 15 0 6028 6185 16713487 16713330 9.670000e-50 209.0
96 TraesCS7A01G486300 chr1B 94.038 889 31 7 1799 2684 77721687 77722556 0.000000e+00 1328.0
97 TraesCS7A01G486300 chr1B 89.237 799 59 7 8220 8993 685042029 685042825 0.000000e+00 974.0
98 TraesCS7A01G486300 chr1B 83.779 561 72 14 1 549 585351549 585352102 1.830000e-141 514.0
99 TraesCS7A01G486300 chr1B 84.267 464 57 12 1 455 604432394 604432850 1.130000e-118 438.0
100 TraesCS7A01G486300 chr1B 92.442 172 13 0 1929 2100 548744804 548744633 7.370000e-61 246.0
101 TraesCS7A01G486300 chr1B 94.203 138 8 0 1799 1936 548745795 548745658 2.690000e-50 211.0
102 TraesCS7A01G486300 chr1B 97.333 75 2 0 2097 2171 569794800 569794726 2.790000e-25 128.0
103 TraesCS7A01G486300 chr1B 96.000 75 3 0 2097 2171 639383238 639383164 1.300000e-23 122.0
104 TraesCS7A01G486300 chr1B 86.567 67 5 4 8133 8199 192616373 192616435 4.760000e-08 71.3
105 TraesCS7A01G486300 chr1B 89.655 58 3 3 8141 8198 582516088 582516142 4.760000e-08 71.3
106 TraesCS7A01G486300 chr5A 93.270 847 46 9 965 1803 629709681 629710524 0.000000e+00 1238.0
107 TraesCS7A01G486300 chr5A 88.588 850 65 17 1 832 545933120 545932285 0.000000e+00 1003.0
108 TraesCS7A01G486300 chr5A 88.353 850 68 18 1 832 702530313 702531149 0.000000e+00 992.0
109 TraesCS7A01G486300 chr5A 89.541 784 51 11 8220 8992 609691989 609692752 0.000000e+00 965.0
110 TraesCS7A01G486300 chr5A 87.356 348 40 4 8876 9221 608638218 608637873 6.920000e-106 396.0
111 TraesCS7A01G486300 chr5A 90.164 61 5 1 8139 8198 22097587 22097647 2.850000e-10 78.7
112 TraesCS7A01G486300 chr4D 87.210 993 89 21 1 962 237612043 237613028 0.000000e+00 1096.0
113 TraesCS7A01G486300 chr4D 87.110 993 90 16 1 962 18590617 18591602 0.000000e+00 1090.0
114 TraesCS7A01G486300 chr4D 83.201 1006 111 27 1 963 486213338 486212348 0.000000e+00 869.0
115 TraesCS7A01G486300 chr4D 95.556 90 4 0 2145 2234 150650014 150649925 2.770000e-30 145.0
116 TraesCS7A01G486300 chr4D 95.556 90 4 0 2145 2234 166137912 166138001 2.770000e-30 145.0
117 TraesCS7A01G486300 chr4D 92.958 71 5 0 860 930 505944801 505944871 4.700000e-18 104.0
118 TraesCS7A01G486300 chr4D 88.136 59 4 3 8141 8198 437666183 437666127 6.160000e-07 67.6
119 TraesCS7A01G486300 chr6D 87.236 995 81 19 5 962 16673719 16672734 0.000000e+00 1092.0
120 TraesCS7A01G486300 chr6D 84.483 986 105 29 1 953 273105734 273106704 0.000000e+00 929.0
121 TraesCS7A01G486300 chr6D 92.157 357 18 2 8876 9223 443862873 443862518 6.630000e-136 496.0
122 TraesCS7A01G486300 chr6D 91.597 357 21 2 8873 9221 367055219 367055574 1.440000e-132 484.0
123 TraesCS7A01G486300 chr6D 86.765 68 5 3 8131 8198 49745800 49745737 1.320000e-08 73.1
124 TraesCS7A01G486300 chr6D 100.000 38 0 0 8162 8199 70086163 70086126 4.760000e-08 71.3
125 TraesCS7A01G486300 chr6D 97.561 41 1 0 8160 8200 90760814 90760854 4.760000e-08 71.3
126 TraesCS7A01G486300 chr6D 86.567 67 5 4 8134 8198 411884548 411884612 4.760000e-08 71.3
127 TraesCS7A01G486300 chr6D 86.207 58 7 1 8142 8198 23185451 23185508 2.870000e-05 62.1
128 TraesCS7A01G486300 chr6B 90.306 784 48 5 8220 8992 650681182 650681948 0.000000e+00 1002.0
129 TraesCS7A01G486300 chr6B 88.745 773 63 4 2098 2867 370063309 370064060 0.000000e+00 924.0
130 TraesCS7A01G486300 chr6B 84.130 460 54 11 1 449 33181422 33181873 2.450000e-115 427.0
131 TraesCS7A01G486300 chr6B 88.889 162 16 2 6028 6189 239327944 239328103 2.090000e-46 198.0
132 TraesCS7A01G486300 chr5B 94.453 631 29 2 2265 2889 299947354 299946724 0.000000e+00 966.0
133 TraesCS7A01G486300 chr5B 86.474 865 38 31 965 1803 625524176 625523365 0.000000e+00 876.0
134 TraesCS7A01G486300 chr5B 88.010 417 32 10 1397 1803 630287052 630286644 2.400000e-130 477.0
135 TraesCS7A01G486300 chr5B 87.608 347 41 2 8876 9221 627761407 627761062 1.490000e-107 401.0
136 TraesCS7A01G486300 chr5B 87.032 347 43 2 8876 9221 624161478 624161133 3.220000e-104 390.0
137 TraesCS7A01G486300 chr5B 93.033 244 8 5 965 1203 628606221 628605982 1.960000e-91 348.0
138 TraesCS7A01G486300 chr5B 94.388 196 7 2 965 1156 625035495 625035300 2.010000e-76 298.0
139 TraesCS7A01G486300 chr5B 94.595 185 5 3 1020 1203 625032893 625032713 2.020000e-71 281.0
140 TraesCS7A01G486300 chr5B 88.938 226 15 6 1382 1604 629276296 629276514 4.380000e-68 270.0
141 TraesCS7A01G486300 chr5B 88.938 226 15 6 1382 1604 629358866 629359084 4.380000e-68 270.0
142 TraesCS7A01G486300 chr5B 86.806 144 15 1 1598 1737 629276760 629276903 3.550000e-34 158.0
143 TraesCS7A01G486300 chr5B 86.806 144 15 1 1598 1737 629359330 629359473 3.550000e-34 158.0
144 TraesCS7A01G486300 chr2B 89.527 783 51 7 8220 8992 274994508 274995269 0.000000e+00 963.0
145 TraesCS7A01G486300 chr2B 90.769 65 5 1 8138 8201 215654077 215654141 1.700000e-12 86.1
146 TraesCS7A01G486300 chr2B 88.889 63 6 1 8138 8199 232118795 232118733 1.020000e-09 76.8
147 TraesCS7A01G486300 chr5D 88.494 817 39 25 1000 1803 501774472 501773698 0.000000e+00 937.0
148 TraesCS7A01G486300 chr5D 88.015 801 46 14 8220 8995 28564559 28565334 0.000000e+00 902.0
149 TraesCS7A01G486300 chr5D 94.930 355 9 2 8876 9221 41520325 41519971 1.800000e-151 547.0
150 TraesCS7A01G486300 chr5D 92.458 358 17 2 8873 9221 334656487 334656843 3.960000e-138 503.0
151 TraesCS7A01G486300 chr5D 96.853 286 8 1 9222 9506 211892842 211893127 2.400000e-130 477.0
152 TraesCS7A01G486300 chr5D 93.478 92 6 0 2142 2233 526736369 526736460 4.630000e-28 137.0
153 TraesCS7A01G486300 chr5D 87.671 73 7 2 8129 8200 563516557 563516486 6.120000e-12 84.2
154 TraesCS7A01G486300 chr4A 91.643 359 21 2 8873 9222 239820122 239820480 1.110000e-133 488.0
155 TraesCS7A01G486300 chr4A 90.736 367 23 3 8873 9229 701643719 701644084 6.680000e-131 479.0
156 TraesCS7A01G486300 chr4A 87.021 339 33 3 8891 9222 667274709 667275043 1.170000e-98 372.0
157 TraesCS7A01G486300 chr4B 81.952 543 79 12 1 531 515707261 515706726 8.760000e-120 442.0
158 TraesCS7A01G486300 chr4B 91.558 154 10 1 2145 2295 645904099 645903946 9.670000e-50 209.0
159 TraesCS7A01G486300 chr4B 97.333 75 2 0 2097 2171 216207742 216207816 2.790000e-25 128.0
160 TraesCS7A01G486300 chr4B 90.909 44 3 1 2197 2239 402225165 402225208 3.710000e-04 58.4
161 TraesCS7A01G486300 chrUn 88.889 162 16 2 6028 6189 467912301 467912142 2.090000e-46 198.0
162 TraesCS7A01G486300 chrUn 90.217 92 9 0 2142 2233 114954407 114954498 4.660000e-23 121.0
163 TraesCS7A01G486300 chrUn 91.228 57 3 2 8147 8202 51379286 51379231 1.020000e-09 76.8
164 TraesCS7A01G486300 chrUn 91.228 57 3 2 8147 8202 404639652 404639707 1.020000e-09 76.8
165 TraesCS7A01G486300 chrUn 86.957 69 5 4 8131 8199 51463027 51462963 3.680000e-09 75.0
166 TraesCS7A01G486300 chrUn 94.000 50 2 1 8160 8209 231964574 231964622 3.680000e-09 75.0
167 TraesCS7A01G486300 chrUn 94.000 50 2 1 8160 8209 235302991 235302943 3.680000e-09 75.0
168 TraesCS7A01G486300 chrUn 100.000 40 0 0 8160 8199 318474261 318474300 3.680000e-09 75.0
169 TraesCS7A01G486300 chrUn 84.722 72 8 3 8130 8199 480578812 480578882 1.710000e-07 69.4
170 TraesCS7A01G486300 chrUn 97.368 38 1 0 8161 8198 294584901 294584938 2.220000e-06 65.8
171 TraesCS7A01G486300 chrUn 95.000 40 2 0 8159 8198 142633976 142634015 7.970000e-06 63.9
172 TraesCS7A01G486300 chrUn 92.857 42 3 0 8160 8201 50435188 50435147 2.870000e-05 62.1
173 TraesCS7A01G486300 chr3B 82.500 120 19 2 3474 3592 63664115 63664233 4.700000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G486300 chr7A 676583400 676592905 9505 True 17555.000000 17555 100.000000 1 9506 1 chr7A.!!$R5 9505
1 TraesCS7A01G486300 chr7A 677226179 677229896 3717 True 2106.333333 3725 98.299667 3475 8198 3 chr7A.!!$R7 4723
2 TraesCS7A01G486300 chr7A 454013246 454014268 1022 True 1517.000000 1517 93.574000 5013 6027 1 chr7A.!!$R3 1014
3 TraesCS7A01G486300 chr7A 690693702 690694726 1024 False 1328.000000 1328 90.166000 5013 6031 1 chr7A.!!$F3 1018
4 TraesCS7A01G486300 chr3A 642269991 642273734 3743 False 2011.000000 3605 96.481333 3474 8199 3 chr3A.!!$F8 4725
5 TraesCS7A01G486300 chr3A 580560713 580565903 5190 False 1834.333333 2492 96.009333 796 9222 3 chr3A.!!$F7 8426
6 TraesCS7A01G486300 chr3A 644495791 644498816 3025 True 1611.666667 2435 96.726333 3473 7497 3 chr3A.!!$R4 4024
7 TraesCS7A01G486300 chr3A 721425544 721426568 1024 False 1338.000000 1338 90.351000 5010 6027 1 chr3A.!!$F5 1017
8 TraesCS7A01G486300 chr3A 721443626 721444649 1023 False 1338.000000 1338 90.341000 5010 6027 1 chr3A.!!$F6 1017
9 TraesCS7A01G486300 chr3A 336815795 336816804 1009 False 1327.000000 1327 90.420000 5013 6027 1 chr3A.!!$F2 1014
10 TraesCS7A01G486300 chr3A 644481920 644482628 708 True 1181.000000 1181 96.756000 7493 8200 1 chr3A.!!$R2 707
11 TraesCS7A01G486300 chr3A 707236066 707239436 3370 True 1117.800000 2385 96.991400 3741 8198 5 chr3A.!!$R5 4457
12 TraesCS7A01G486300 chr3A 462636809 462637542 733 False 1057.000000 1057 92.916000 2167 2889 1 chr3A.!!$F3 722
13 TraesCS7A01G486300 chr7D 554505594 554516926 11332 False 1820.800000 2760 93.772200 1 8992 5 chr7D.!!$F6 8991
14 TraesCS7A01G486300 chr7D 551473487 551478423 4936 True 1703.333333 2747 94.337333 1 8863 3 chr7D.!!$R5 8862
15 TraesCS7A01G486300 chr7D 221555172 221556139 967 True 1157.000000 1157 88.493000 1 962 1 chr7D.!!$R1 961
16 TraesCS7A01G486300 chr7D 516879344 516880333 989 False 1050.000000 1050 86.400000 1 962 1 chr7D.!!$F4 961
17 TraesCS7A01G486300 chr7D 61852854 61854209 1355 True 497.333333 599 88.041667 6349 7826 3 chr7D.!!$R4 1477
18 TraesCS7A01G486300 chr1D 268488783 268494384 5601 False 1667.000000 2667 92.364667 1 8992 3 chr1D.!!$F2 8991
19 TraesCS7A01G486300 chr1D 298582039 298583057 1018 True 1314.000000 1314 90.010000 5013 6027 1 chr1D.!!$R2 1014
20 TraesCS7A01G486300 chr6A 595796354 595798011 1657 False 2536.000000 2536 94.163000 1799 3475 1 chr6A.!!$F2 1676
21 TraesCS7A01G486300 chr6A 592957322 592958638 1316 True 1971.000000 1971 93.572000 2142 3475 1 chr6A.!!$R2 1333
22 TraesCS7A01G486300 chr6A 159241012 159242086 1074 True 1517.000000 1517 92.055000 1799 2888 1 chr6A.!!$R1 1089
23 TraesCS7A01G486300 chr1A 165372296 165373943 1647 True 2416.000000 2416 92.985000 1799 3475 1 chr1A.!!$R1 1676
24 TraesCS7A01G486300 chr1A 420429181 420430017 836 False 1031.000000 1031 89.176000 1 832 1 chr1A.!!$F4 831
25 TraesCS7A01G486300 chr1A 422375913 422376747 834 True 1007.000000 1007 88.732000 1 832 1 chr1A.!!$R2 831
26 TraesCS7A01G486300 chr1A 310697516 310698068 552 False 486.000000 486 82.888000 1 549 1 chr1A.!!$F3 548
27 TraesCS7A01G486300 chr2A 95130715 95132365 1650 True 2414.000000 2414 92.938000 1799 3475 1 chr2A.!!$R3 1676
28 TraesCS7A01G486300 chr2A 51025444 51026465 1021 True 1328.000000 1328 90.225000 5013 6028 1 chr2A.!!$R1 1015
29 TraesCS7A01G486300 chr2A 469827122 469828132 1010 True 1328.000000 1328 90.411000 5013 6027 1 chr2A.!!$R6 1014
30 TraesCS7A01G486300 chr2A 469821352 469822364 1012 True 1327.000000 1327 90.323000 5013 6029 1 chr2A.!!$R5 1016
31 TraesCS7A01G486300 chr7B 83561358 83563007 1649 False 2379.000000 2379 92.590000 1799 3475 1 chr7B.!!$F1 1676
32 TraesCS7A01G486300 chr3D 52180078 52181364 1286 True 1921.000000 1921 93.450000 2167 3475 1 chr3D.!!$R1 1308
33 TraesCS7A01G486300 chr3D 542662296 542663093 797 True 1011.000000 1011 90.012000 8220 8995 1 chr3D.!!$R4 775
34 TraesCS7A01G486300 chr3D 111998913 111999579 666 False 957.000000 957 92.964000 8220 8871 1 chr3D.!!$F1 651
35 TraesCS7A01G486300 chr2D 574646813 574647885 1072 True 1585.000000 1585 93.242000 1799 2886 1 chr2D.!!$R4 1087
36 TraesCS7A01G486300 chr2D 471790591 471791430 839 True 1013.000000 1013 88.706000 1 832 1 chr2D.!!$R3 831
37 TraesCS7A01G486300 chr2D 56852257 56852879 622 False 841.000000 841 91.125000 1 623 1 chr2D.!!$F1 622
38 TraesCS7A01G486300 chr1B 77721687 77722556 869 False 1328.000000 1328 94.038000 1799 2684 1 chr1B.!!$F1 885
39 TraesCS7A01G486300 chr1B 685042029 685042825 796 False 974.000000 974 89.237000 8220 8993 1 chr1B.!!$F6 773
40 TraesCS7A01G486300 chr1B 585351549 585352102 553 False 514.000000 514 83.779000 1 549 1 chr1B.!!$F4 548
41 TraesCS7A01G486300 chr1B 548744633 548745795 1162 True 228.500000 246 93.322500 1799 2100 2 chr1B.!!$R3 301
42 TraesCS7A01G486300 chr5A 629709681 629710524 843 False 1238.000000 1238 93.270000 965 1803 1 chr5A.!!$F3 838
43 TraesCS7A01G486300 chr5A 545932285 545933120 835 True 1003.000000 1003 88.588000 1 832 1 chr5A.!!$R1 831
44 TraesCS7A01G486300 chr5A 702530313 702531149 836 False 992.000000 992 88.353000 1 832 1 chr5A.!!$F4 831
45 TraesCS7A01G486300 chr5A 609691989 609692752 763 False 965.000000 965 89.541000 8220 8992 1 chr5A.!!$F2 772
46 TraesCS7A01G486300 chr4D 237612043 237613028 985 False 1096.000000 1096 87.210000 1 962 1 chr4D.!!$F3 961
47 TraesCS7A01G486300 chr4D 18590617 18591602 985 False 1090.000000 1090 87.110000 1 962 1 chr4D.!!$F1 961
48 TraesCS7A01G486300 chr4D 486212348 486213338 990 True 869.000000 869 83.201000 1 963 1 chr4D.!!$R3 962
49 TraesCS7A01G486300 chr6D 16672734 16673719 985 True 1092.000000 1092 87.236000 5 962 1 chr6D.!!$R1 957
50 TraesCS7A01G486300 chr6D 273105734 273106704 970 False 929.000000 929 84.483000 1 953 1 chr6D.!!$F3 952
51 TraesCS7A01G486300 chr6B 650681182 650681948 766 False 1002.000000 1002 90.306000 8220 8992 1 chr6B.!!$F4 772
52 TraesCS7A01G486300 chr6B 370063309 370064060 751 False 924.000000 924 88.745000 2098 2867 1 chr6B.!!$F3 769
53 TraesCS7A01G486300 chr5B 299946724 299947354 630 True 966.000000 966 94.453000 2265 2889 1 chr5B.!!$R1 624
54 TraesCS7A01G486300 chr5B 625523365 625524176 811 True 876.000000 876 86.474000 965 1803 1 chr5B.!!$R3 838
55 TraesCS7A01G486300 chr5B 625032713 625035495 2782 True 289.500000 298 94.491500 965 1203 2 chr5B.!!$R7 238
56 TraesCS7A01G486300 chr5B 629276296 629276903 607 False 214.000000 270 87.872000 1382 1737 2 chr5B.!!$F1 355
57 TraesCS7A01G486300 chr5B 629358866 629359473 607 False 214.000000 270 87.872000 1382 1737 2 chr5B.!!$F2 355
58 TraesCS7A01G486300 chr2B 274994508 274995269 761 False 963.000000 963 89.527000 8220 8992 1 chr2B.!!$F2 772
59 TraesCS7A01G486300 chr5D 501773698 501774472 774 True 937.000000 937 88.494000 1000 1803 1 chr5D.!!$R2 803
60 TraesCS7A01G486300 chr5D 28564559 28565334 775 False 902.000000 902 88.015000 8220 8995 1 chr5D.!!$F1 775
61 TraesCS7A01G486300 chr4B 515706726 515707261 535 True 442.000000 442 81.952000 1 531 1 chr4B.!!$R1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
789 851 0.107848 CCTAACCGGCTAACCCACAG 60.108 60.000 0.00 0.0 0.00 3.66 F
1486 5245 0.978146 CCTGGGTCCTCGTGGAATCT 60.978 60.000 7.99 0.0 45.18 2.40 F
1513 5273 2.306219 GGGAAAGCCTCTGGTTTAGTCT 59.694 50.000 0.00 0.0 41.99 3.24 F
2821 15428 0.264359 CCATCTCCACCTCCCTCTCT 59.736 60.000 0.00 0.0 0.00 3.10 F
3137 15744 0.037697 TGTGCGGCTTCGACTACAAT 60.038 50.000 0.00 0.0 35.61 2.71 F
4802 17433 1.276622 ACGTTCTTCCCCAGTGCTAT 58.723 50.000 0.00 0.0 0.00 2.97 F
6110 18814 1.451387 GGTCTAATGTGCCACCCGG 60.451 63.158 0.00 0.0 0.00 5.73 F
7073 19790 6.002082 GGGTAAATCAGACTAACTTGGTGTT 58.998 40.000 0.00 0.0 42.31 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1672 5711 0.391130 GTCATCCGGCTAAGCACACA 60.391 55.000 0.00 0.00 0.00 3.72 R
2706 15313 0.465460 TGCAGGACAAACAGGACCAC 60.465 55.000 0.00 0.00 0.00 4.16 R
3137 15744 1.076438 TGGACTCACTGGAGAGGAGA 58.924 55.000 0.00 0.00 44.26 3.71 R
4245 16874 0.692476 ATGCAGTTCAGTACCAGCCA 59.308 50.000 0.00 0.00 0.00 4.75 R
5000 17661 0.381428 GTTCGTGTTCGCTGTTCGTG 60.381 55.000 0.00 0.00 39.67 4.35 R
6773 19486 0.673985 TGCATATTCTCCGCTAGCGT 59.326 50.000 33.18 18.39 37.81 5.07 R
7317 20034 3.347958 TGTTGCATCCGTTTTGTTCTC 57.652 42.857 0.00 0.00 0.00 2.87 R
9062 22095 0.178533 AAAGGTCGTTGGTTCCACGA 59.821 50.000 10.60 10.60 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
151 157 6.386927 TCCTACATAGTGGTTGAATCTTGGAT 59.613 38.462 0.00 0.00 0.00 3.41
207 217 3.719173 TTTTTGCGTTTAGGGTCTTGG 57.281 42.857 0.00 0.00 0.00 3.61
208 218 2.642154 TTTGCGTTTAGGGTCTTGGA 57.358 45.000 0.00 0.00 0.00 3.53
256 268 8.258007 ACTATGAGCAGCTACAGTACAAATTTA 58.742 33.333 0.00 0.00 0.00 1.40
257 269 9.265901 CTATGAGCAGCTACAGTACAAATTTAT 57.734 33.333 0.00 0.00 0.00 1.40
260 272 5.523916 AGCAGCTACAGTACAAATTTATCCG 59.476 40.000 0.00 0.00 0.00 4.18
261 273 5.738370 CAGCTACAGTACAAATTTATCCGC 58.262 41.667 0.00 0.00 0.00 5.54
266 278 7.201617 GCTACAGTACAAATTTATCCGCTTTCT 60.202 37.037 0.00 0.00 0.00 2.52
270 282 4.737054 ACAAATTTATCCGCTTTCTGCTG 58.263 39.130 0.00 0.00 40.11 4.41
273 285 5.841957 AATTTATCCGCTTTCTGCTGAAT 57.158 34.783 6.88 0.00 38.36 2.57
274 286 4.882671 TTTATCCGCTTTCTGCTGAATC 57.117 40.909 6.88 2.04 38.36 2.52
277 295 1.806542 TCCGCTTTCTGCTGAATCAAC 59.193 47.619 6.88 0.00 40.11 3.18
323 341 5.277828 GCATCGAAACTTTTGACACCTAACT 60.278 40.000 0.00 0.00 0.00 2.24
353 371 6.071447 GGTCAATTGTGCATTATATATGGCCA 60.071 38.462 8.56 8.56 30.62 5.36
410 429 8.588290 TGCAACAAATATATGGTAAGTCCTTT 57.412 30.769 0.00 0.00 37.07 3.11
676 706 8.128582 CCAAATTATTTAGCGCACTCTAATTGA 58.871 33.333 11.47 0.00 0.00 2.57
684 714 4.281941 AGCGCACTCTAATTGATCCATAGA 59.718 41.667 11.47 0.00 0.00 1.98
726 756 2.107041 AACCACCGTCGGATGCTTCA 62.107 55.000 20.51 0.00 0.00 3.02
762 793 2.858974 CACCCCCTCACCCAACCT 60.859 66.667 0.00 0.00 0.00 3.50
777 825 0.402887 AACCTCCCAAACCCTAACCG 59.597 55.000 0.00 0.00 0.00 4.44
781 843 0.547229 TCCCAAACCCTAACCGGCTA 60.547 55.000 0.00 0.00 0.00 3.93
782 844 0.328926 CCCAAACCCTAACCGGCTAA 59.671 55.000 0.00 0.00 0.00 3.09
785 847 0.329261 AAACCCTAACCGGCTAACCC 59.671 55.000 0.00 0.00 0.00 4.11
786 848 0.841594 AACCCTAACCGGCTAACCCA 60.842 55.000 0.00 0.00 0.00 4.51
788 850 1.555477 CCCTAACCGGCTAACCCACA 61.555 60.000 0.00 0.00 0.00 4.17
789 851 0.107848 CCTAACCGGCTAACCCACAG 60.108 60.000 0.00 0.00 0.00 3.66
837 968 4.400251 CCACCTCCTCCCCGTCCT 62.400 72.222 0.00 0.00 0.00 3.85
864 995 4.457496 CCCATCGCGTCACCTGCT 62.457 66.667 5.77 0.00 0.00 4.24
1002 1830 1.559682 GGACAGAGCCAAGGAACCATA 59.440 52.381 0.00 0.00 0.00 2.74
1017 1845 1.273838 ACCATAGGCTCCTTCCTGTCA 60.274 52.381 0.00 0.00 37.01 3.58
1088 2023 4.379243 CGCCGTCCACTCCAAGCT 62.379 66.667 0.00 0.00 0.00 3.74
1468 5227 2.099098 CCACCGAATTGTTAATCTGGCC 59.901 50.000 0.00 0.00 0.00 5.36
1486 5245 0.978146 CCTGGGTCCTCGTGGAATCT 60.978 60.000 7.99 0.00 45.18 2.40
1513 5273 2.306219 GGGAAAGCCTCTGGTTTAGTCT 59.694 50.000 0.00 0.00 41.99 3.24
1540 5300 3.006537 CCGTCTTGGAGAAAACAGGTAGA 59.993 47.826 0.00 0.00 42.00 2.59
1672 5711 3.117888 ACTCCGGTAGATTTGGATGCATT 60.118 43.478 0.00 0.00 0.00 3.56
1751 5796 8.195436 AGAAATCAGATGCATTGAATCGAAATT 58.805 29.630 0.00 0.00 0.00 1.82
1755 5800 6.031471 CAGATGCATTGAATCGAAATTGACA 58.969 36.000 0.00 0.00 0.00 3.58
2706 15313 2.591429 TGTGTTGCAGCTCACCCG 60.591 61.111 15.19 0.00 34.14 5.28
2736 15343 1.717032 TGTCCTGCAGGTTAGTGAGT 58.283 50.000 31.58 0.00 36.34 3.41
2821 15428 0.264359 CCATCTCCACCTCCCTCTCT 59.736 60.000 0.00 0.00 0.00 3.10
3002 15609 1.033746 TATTTGCTCCTGCTGCTGCC 61.034 55.000 13.47 0.00 40.48 4.85
3053 15660 7.675161 TTTGATGATCTCCTTGTACCAGATA 57.325 36.000 0.00 0.00 0.00 1.98
3137 15744 0.037697 TGTGCGGCTTCGACTACAAT 60.038 50.000 0.00 0.00 35.61 2.71
3147 15754 3.646736 TCGACTACAATCTCCTCTCCA 57.353 47.619 0.00 0.00 0.00 3.86
3271 15882 6.425417 GTGTATTGGAGCCTAATTAGCTTCTC 59.575 42.308 6.99 11.62 41.75 2.87
3529 16140 6.223852 AGCCTTTACGTTCATCCACATATAG 58.776 40.000 0.00 0.00 0.00 1.31
3592 16203 7.148787 CGGAGATTTAATGATCTAAGCGTTACC 60.149 40.741 0.00 0.00 36.54 2.85
4006 16634 6.037391 CCTTTAACAAAACGGAGTCACAACTA 59.963 38.462 0.00 0.00 45.00 2.24
4011 16639 6.285990 ACAAAACGGAGTCACAACTATACTT 58.714 36.000 0.00 0.00 45.00 2.24
4014 16642 5.916661 ACGGAGTCACAACTATACTTGAT 57.083 39.130 0.00 0.00 29.74 2.57
4044 16673 4.333649 TCCGAATAACTGTACCGTGACTAG 59.666 45.833 0.00 0.00 0.00 2.57
4065 16694 9.537848 GACTAGTTTACCAATTATTGTTTGACG 57.462 33.333 0.00 0.00 0.00 4.35
4158 16787 4.161001 GCATGAAAGGGTTGAAATCCAGAT 59.839 41.667 0.00 0.00 0.00 2.90
4245 16874 3.322254 AGACTCATGAAGAACGGACTTGT 59.678 43.478 0.00 0.00 0.00 3.16
4391 17020 1.610673 TGCGAGGAGAAGGGAGCTT 60.611 57.895 0.00 0.00 0.00 3.74
4419 17048 2.826777 CTTCCGCTGCCAATGGAGGT 62.827 60.000 2.05 0.00 32.39 3.85
4502 17132 4.078922 AGAGAGTTCATGATCCAGGGACTA 60.079 45.833 0.00 0.00 33.89 2.59
4561 17192 2.498885 GGCAAGAAAATTGCAGATCCCT 59.501 45.455 13.94 0.00 46.58 4.20
4802 17433 1.276622 ACGTTCTTCCCCAGTGCTAT 58.723 50.000 0.00 0.00 0.00 2.97
4993 17654 4.814294 GGGGCTCGGCGTACAGTG 62.814 72.222 6.85 0.00 0.00 3.66
4994 17655 4.065281 GGGCTCGGCGTACAGTGT 62.065 66.667 6.85 0.00 0.00 3.55
4995 17656 2.048503 GGCTCGGCGTACAGTGTT 60.049 61.111 6.85 0.00 0.00 3.32
4996 17657 2.092882 GGCTCGGCGTACAGTGTTC 61.093 63.158 6.85 0.00 0.00 3.18
4997 17658 2.434134 GCTCGGCGTACAGTGTTCG 61.434 63.158 16.91 16.91 0.00 3.95
5050 17711 3.072468 CCTCCAACGCCGAGGGTA 61.072 66.667 0.00 0.00 42.85 3.69
5073 17734 2.733218 CCGCAGCTCACGTCGAAA 60.733 61.111 0.00 0.00 0.00 3.46
5083 17744 1.601759 ACGTCGAAAGAGACCCGGA 60.602 57.895 0.73 0.00 43.49 5.14
5146 17810 4.973055 CGAAACCCCGCACGTCCA 62.973 66.667 0.00 0.00 0.00 4.02
5374 18059 5.246203 TCTCATCTATTTATAAGGCGGCTGT 59.754 40.000 14.21 7.38 0.00 4.40
5443 18129 3.111741 ACCCTAACCTAACTCGGACAT 57.888 47.619 0.00 0.00 0.00 3.06
5448 18134 5.303589 CCCTAACCTAACTCGGACATGAATA 59.696 44.000 0.00 0.00 0.00 1.75
5537 18224 3.498777 GGCCAACTCTCTGTTACTTTGTC 59.501 47.826 0.00 0.00 37.07 3.18
5739 18426 3.470709 ACGACCTCGGATTAAGACGATA 58.529 45.455 4.97 0.00 44.95 2.92
5959 18649 3.437784 CCATCTAGAGTGACCTCCCATCT 60.438 52.174 0.00 0.00 38.58 2.90
6097 18792 7.283127 GCAATGATTTAGAGATGGTTTGGTCTA 59.717 37.037 0.00 0.00 0.00 2.59
6110 18814 1.451387 GGTCTAATGTGCCACCCGG 60.451 63.158 0.00 0.00 0.00 5.73
6241 18945 9.887629 ATTGGAATATTTGTTATGCATCACAAA 57.112 25.926 30.93 30.93 44.78 2.83
6265 18969 8.876275 AATTTTGATACACATGCAATACATCC 57.124 30.769 0.00 0.00 36.64 3.51
6606 19319 6.585702 CACAATTGCCGATTAAAATTCTGACA 59.414 34.615 5.05 0.00 0.00 3.58
6613 19326 6.260050 GCCGATTAAAATTCTGACAGGATACA 59.740 38.462 1.81 0.00 41.41 2.29
6773 19486 6.208599 CCAACCAACAAGAAGCCTATAGAAAA 59.791 38.462 0.00 0.00 0.00 2.29
7073 19790 6.002082 GGGTAAATCAGACTAACTTGGTGTT 58.998 40.000 0.00 0.00 42.31 3.32
7951 20681 8.353684 AGAGTCAACTCCATATATACAAAGTCG 58.646 37.037 6.54 0.00 43.88 4.18
8025 20755 3.512329 TCCAGAACAATTAGTACGGAGCA 59.488 43.478 0.00 0.00 0.00 4.26
8140 20871 7.436970 GTCCAAACCGAGTTGAAATTAAAACAT 59.563 33.333 6.09 0.00 0.00 2.71
8241 20972 5.652014 CCACTGATTTATCCACCTTTTGCTA 59.348 40.000 0.00 0.00 0.00 3.49
8326 21057 2.031120 CTTGGTTGGCCTGAACTTCAA 58.969 47.619 3.32 1.17 35.27 2.69
8532 21265 5.983540 GAACTGGAGTGTTCTCATAGGAAT 58.016 41.667 0.00 0.00 42.03 3.01
8692 21700 9.459640 CTGCTTTAAATGACATGAAGATTATGG 57.540 33.333 0.00 0.00 0.00 2.74
8737 21759 3.926058 TGGAAAATAGTACTGGGCCTC 57.074 47.619 5.39 0.00 0.00 4.70
8809 21831 2.861147 AAACACACTAGAGAAGGGCC 57.139 50.000 0.00 0.00 28.14 5.80
8823 21845 7.888250 AGAGAAGGGCCAAAATAATAAGAAG 57.112 36.000 6.18 0.00 0.00 2.85
9008 22041 2.857186 TCTTGTGCCACATCAGCTTA 57.143 45.000 0.00 0.00 0.00 3.09
9012 22045 0.804989 GTGCCACATCAGCTTACCAC 59.195 55.000 0.00 0.00 0.00 4.16
9031 22064 1.521681 GCTGGATGCCTACGTGGTC 60.522 63.158 0.00 0.00 38.35 4.02
9033 22066 0.179100 CTGGATGCCTACGTGGTCTG 60.179 60.000 0.00 0.00 38.35 3.51
9043 22076 4.416738 GTGGTCTGGGGAGGCTGC 62.417 72.222 0.00 0.00 0.00 5.25
9117 22150 1.950828 TTTCAGTTTACGACCGCCAA 58.049 45.000 0.00 0.00 0.00 4.52
9173 22206 6.366061 GGTTGCAAATGAAAAACTATGACCTC 59.634 38.462 0.00 0.00 0.00 3.85
9222 22255 9.772973 ACAAGTTGACATATTTCTTGTAGTGTA 57.227 29.630 10.54 0.00 44.11 2.90
9224 22257 9.436957 AAGTTGACATATTTCTTGTAGTGTAGG 57.563 33.333 0.00 0.00 0.00 3.18
9225 22258 8.812972 AGTTGACATATTTCTTGTAGTGTAGGA 58.187 33.333 0.00 0.00 0.00 2.94
9226 22259 9.431887 GTTGACATATTTCTTGTAGTGTAGGAA 57.568 33.333 0.00 0.00 0.00 3.36
9227 22260 9.653287 TTGACATATTTCTTGTAGTGTAGGAAG 57.347 33.333 0.00 0.00 0.00 3.46
9228 22261 8.258007 TGACATATTTCTTGTAGTGTAGGAAGG 58.742 37.037 0.00 0.00 0.00 3.46
9229 22262 7.565680 ACATATTTCTTGTAGTGTAGGAAGGG 58.434 38.462 0.00 0.00 0.00 3.95
9230 22263 7.402071 ACATATTTCTTGTAGTGTAGGAAGGGA 59.598 37.037 0.00 0.00 0.00 4.20
9231 22264 6.697641 ATTTCTTGTAGTGTAGGAAGGGAA 57.302 37.500 0.00 0.00 0.00 3.97
9232 22265 5.479124 TTCTTGTAGTGTAGGAAGGGAAC 57.521 43.478 0.00 0.00 0.00 3.62
9233 22266 4.485875 TCTTGTAGTGTAGGAAGGGAACA 58.514 43.478 0.00 0.00 0.00 3.18
9234 22267 4.903049 TCTTGTAGTGTAGGAAGGGAACAA 59.097 41.667 0.00 0.00 0.00 2.83
9235 22268 4.612264 TGTAGTGTAGGAAGGGAACAAC 57.388 45.455 0.00 0.00 0.00 3.32
9236 22269 3.968649 TGTAGTGTAGGAAGGGAACAACA 59.031 43.478 0.00 0.00 0.00 3.33
9237 22270 3.487120 AGTGTAGGAAGGGAACAACAC 57.513 47.619 0.00 0.00 37.96 3.32
9238 22271 2.140717 GTGTAGGAAGGGAACAACACG 58.859 52.381 0.00 0.00 0.00 4.49
9239 22272 1.071071 TGTAGGAAGGGAACAACACGG 59.929 52.381 0.00 0.00 0.00 4.94
9240 22273 1.345415 GTAGGAAGGGAACAACACGGA 59.655 52.381 0.00 0.00 0.00 4.69
9241 22274 0.396811 AGGAAGGGAACAACACGGAG 59.603 55.000 0.00 0.00 0.00 4.63
9242 22275 0.605589 GGAAGGGAACAACACGGAGG 60.606 60.000 0.00 0.00 0.00 4.30
9243 22276 1.228154 AAGGGAACAACACGGAGGC 60.228 57.895 0.00 0.00 0.00 4.70
9244 22277 1.990160 AAGGGAACAACACGGAGGCA 61.990 55.000 0.00 0.00 0.00 4.75
9245 22278 1.966451 GGGAACAACACGGAGGCAG 60.966 63.158 0.00 0.00 0.00 4.85
9246 22279 1.966451 GGAACAACACGGAGGCAGG 60.966 63.158 0.00 0.00 0.00 4.85
9247 22280 1.966451 GAACAACACGGAGGCAGGG 60.966 63.158 0.00 0.00 0.00 4.45
9248 22281 2.391724 GAACAACACGGAGGCAGGGA 62.392 60.000 0.00 0.00 0.00 4.20
9249 22282 1.990160 AACAACACGGAGGCAGGGAA 61.990 55.000 0.00 0.00 0.00 3.97
9250 22283 1.672356 CAACACGGAGGCAGGGAAG 60.672 63.158 0.00 0.00 0.00 3.46
9251 22284 1.841556 AACACGGAGGCAGGGAAGA 60.842 57.895 0.00 0.00 0.00 2.87
9252 22285 2.113243 AACACGGAGGCAGGGAAGAC 62.113 60.000 0.00 0.00 0.00 3.01
9253 22286 2.120718 ACGGAGGCAGGGAAGACT 59.879 61.111 0.00 0.00 0.00 3.24
9254 22287 1.985116 ACGGAGGCAGGGAAGACTC 60.985 63.158 0.00 0.00 43.17 3.36
9255 22288 2.896443 GGAGGCAGGGAAGACTCG 59.104 66.667 0.00 0.00 44.91 4.18
9256 22289 2.726351 GGAGGCAGGGAAGACTCGG 61.726 68.421 0.00 0.00 44.91 4.63
9257 22290 3.378399 GAGGCAGGGAAGACTCGGC 62.378 68.421 0.00 0.00 33.22 5.54
9258 22291 3.706373 GGCAGGGAAGACTCGGCA 61.706 66.667 0.00 0.00 39.36 5.69
9259 22292 2.125350 GCAGGGAAGACTCGGCAG 60.125 66.667 0.00 0.00 37.62 4.85
9260 22293 2.948720 GCAGGGAAGACTCGGCAGT 61.949 63.158 0.00 0.00 37.62 4.40
9261 22294 1.674057 CAGGGAAGACTCGGCAGTT 59.326 57.895 0.00 0.00 30.63 3.16
9262 22295 0.671781 CAGGGAAGACTCGGCAGTTG 60.672 60.000 0.00 0.00 30.63 3.16
9263 22296 1.122019 AGGGAAGACTCGGCAGTTGT 61.122 55.000 0.00 0.00 30.63 3.32
9264 22297 0.250338 GGGAAGACTCGGCAGTTGTT 60.250 55.000 0.00 0.00 30.63 2.83
9265 22298 1.594331 GGAAGACTCGGCAGTTGTTT 58.406 50.000 0.00 0.00 30.63 2.83
9266 22299 1.531578 GGAAGACTCGGCAGTTGTTTC 59.468 52.381 0.00 0.00 30.63 2.78
9267 22300 1.531578 GAAGACTCGGCAGTTGTTTCC 59.468 52.381 0.00 0.00 30.63 3.13
9268 22301 0.250338 AGACTCGGCAGTTGTTTCCC 60.250 55.000 0.00 0.00 30.63 3.97
9269 22302 0.534203 GACTCGGCAGTTGTTTCCCA 60.534 55.000 0.00 0.00 30.63 4.37
9270 22303 0.818040 ACTCGGCAGTTGTTTCCCAC 60.818 55.000 0.00 0.00 0.00 4.61
9271 22304 1.841663 CTCGGCAGTTGTTTCCCACG 61.842 60.000 0.00 0.00 0.00 4.94
9272 22305 2.335011 GGCAGTTGTTTCCCACGC 59.665 61.111 0.00 0.00 0.00 5.34
9273 22306 2.051345 GCAGTTGTTTCCCACGCG 60.051 61.111 3.53 3.53 0.00 6.01
9274 22307 2.637025 CAGTTGTTTCCCACGCGG 59.363 61.111 12.47 0.00 0.00 6.46
9275 22308 1.890041 CAGTTGTTTCCCACGCGGA 60.890 57.895 12.47 0.00 39.68 5.54
9276 22309 1.597027 AGTTGTTTCCCACGCGGAG 60.597 57.895 12.47 1.64 43.39 4.63
9277 22310 2.281208 TTGTTTCCCACGCGGAGG 60.281 61.111 12.47 12.41 43.39 4.30
9287 22320 3.217743 CGCGGAGGGGAGTAGGAC 61.218 72.222 0.00 0.00 36.55 3.85
9288 22321 2.279408 GCGGAGGGGAGTAGGACT 59.721 66.667 0.00 0.00 0.00 3.85
9289 22322 1.829096 GCGGAGGGGAGTAGGACTC 60.829 68.421 0.00 0.00 44.32 3.36
9290 22323 1.924352 CGGAGGGGAGTAGGACTCT 59.076 63.158 6.58 0.00 44.46 3.24
9291 22324 1.138568 CGGAGGGGAGTAGGACTCTA 58.861 60.000 6.58 0.00 44.46 2.43
9292 22325 1.202794 CGGAGGGGAGTAGGACTCTAC 60.203 61.905 6.58 0.00 44.46 2.59
9302 22335 4.891627 GTAGGACTCTACGAGGGTTAAC 57.108 50.000 0.00 0.00 36.83 2.01
9303 22336 3.735720 AGGACTCTACGAGGGTTAACT 57.264 47.619 5.42 0.00 33.35 2.24
9304 22337 3.354467 AGGACTCTACGAGGGTTAACTG 58.646 50.000 5.42 0.00 33.35 3.16
9305 22338 2.426381 GGACTCTACGAGGGTTAACTGG 59.574 54.545 5.42 0.00 33.35 4.00
9306 22339 3.087781 GACTCTACGAGGGTTAACTGGT 58.912 50.000 5.42 0.00 33.35 4.00
9307 22340 3.504375 ACTCTACGAGGGTTAACTGGTT 58.496 45.455 5.42 0.00 33.35 3.67
9308 22341 3.509184 ACTCTACGAGGGTTAACTGGTTC 59.491 47.826 5.42 0.00 33.35 3.62
9309 22342 2.489329 TCTACGAGGGTTAACTGGTTCG 59.511 50.000 5.42 11.59 31.65 3.95
9310 22343 1.331214 ACGAGGGTTAACTGGTTCGA 58.669 50.000 20.00 0.00 32.81 3.71
9311 22344 1.000171 ACGAGGGTTAACTGGTTCGAC 60.000 52.381 20.00 0.00 32.81 4.20
9312 22345 1.271656 CGAGGGTTAACTGGTTCGACT 59.728 52.381 5.42 0.00 0.00 4.18
9313 22346 2.685100 GAGGGTTAACTGGTTCGACTG 58.315 52.381 5.42 0.00 0.00 3.51
9314 22347 1.154197 GGGTTAACTGGTTCGACTGC 58.846 55.000 5.42 0.00 0.00 4.40
9315 22348 1.154197 GGTTAACTGGTTCGACTGCC 58.846 55.000 5.42 0.00 0.00 4.85
9316 22349 0.788391 GTTAACTGGTTCGACTGCCG 59.212 55.000 0.00 0.00 40.25 5.69
9317 22350 0.390124 TTAACTGGTTCGACTGCCGT 59.610 50.000 0.00 0.00 39.75 5.68
9318 22351 0.038892 TAACTGGTTCGACTGCCGTC 60.039 55.000 0.00 0.00 39.75 4.79
9332 22365 4.798288 CGTCGCCGGAGAATAACA 57.202 55.556 10.32 0.00 0.00 2.41
9333 22366 2.578369 CGTCGCCGGAGAATAACAG 58.422 57.895 10.32 0.00 0.00 3.16
9334 22367 1.480219 CGTCGCCGGAGAATAACAGC 61.480 60.000 10.32 0.00 0.00 4.40
9335 22368 0.459585 GTCGCCGGAGAATAACAGCA 60.460 55.000 10.32 0.00 0.00 4.41
9336 22369 0.179111 TCGCCGGAGAATAACAGCAG 60.179 55.000 5.05 0.00 0.00 4.24
9337 22370 1.154205 CGCCGGAGAATAACAGCAGG 61.154 60.000 5.05 0.00 0.00 4.85
9338 22371 0.107654 GCCGGAGAATAACAGCAGGT 60.108 55.000 5.05 0.00 0.00 4.00
9339 22372 1.656652 CCGGAGAATAACAGCAGGTG 58.343 55.000 0.00 0.00 0.00 4.00
9340 22373 1.066143 CCGGAGAATAACAGCAGGTGT 60.066 52.381 0.00 0.00 43.24 4.16
9341 22374 2.002586 CGGAGAATAACAGCAGGTGTG 58.997 52.381 5.89 0.00 40.26 3.82
9342 22375 2.359900 GGAGAATAACAGCAGGTGTGG 58.640 52.381 5.89 0.00 40.26 4.17
9343 22376 2.359900 GAGAATAACAGCAGGTGTGGG 58.640 52.381 5.89 0.00 40.26 4.61
9344 22377 1.705186 AGAATAACAGCAGGTGTGGGT 59.295 47.619 5.89 0.00 40.26 4.51
9345 22378 1.812571 GAATAACAGCAGGTGTGGGTG 59.187 52.381 5.89 0.00 40.26 4.61
9346 22379 1.064003 ATAACAGCAGGTGTGGGTGA 58.936 50.000 5.89 0.00 40.26 4.02
9347 22380 0.396435 TAACAGCAGGTGTGGGTGAG 59.604 55.000 5.89 0.00 40.26 3.51
9348 22381 1.635817 AACAGCAGGTGTGGGTGAGT 61.636 55.000 5.89 0.00 40.26 3.41
9349 22382 0.762842 ACAGCAGGTGTGGGTGAGTA 60.763 55.000 3.92 0.00 38.28 2.59
9350 22383 0.036952 CAGCAGGTGTGGGTGAGTAG 60.037 60.000 0.00 0.00 35.87 2.57
9351 22384 0.178932 AGCAGGTGTGGGTGAGTAGA 60.179 55.000 0.00 0.00 0.00 2.59
9352 22385 0.247736 GCAGGTGTGGGTGAGTAGAG 59.752 60.000 0.00 0.00 0.00 2.43
9353 22386 0.898320 CAGGTGTGGGTGAGTAGAGG 59.102 60.000 0.00 0.00 0.00 3.69
9354 22387 0.252284 AGGTGTGGGTGAGTAGAGGG 60.252 60.000 0.00 0.00 0.00 4.30
9355 22388 0.252103 GGTGTGGGTGAGTAGAGGGA 60.252 60.000 0.00 0.00 0.00 4.20
9356 22389 1.622725 GGTGTGGGTGAGTAGAGGGAT 60.623 57.143 0.00 0.00 0.00 3.85
9357 22390 1.482593 GTGTGGGTGAGTAGAGGGATG 59.517 57.143 0.00 0.00 0.00 3.51
9358 22391 1.123928 GTGGGTGAGTAGAGGGATGG 58.876 60.000 0.00 0.00 0.00 3.51
9359 22392 0.691078 TGGGTGAGTAGAGGGATGGC 60.691 60.000 0.00 0.00 0.00 4.40
9360 22393 0.399233 GGGTGAGTAGAGGGATGGCT 60.399 60.000 0.00 0.00 0.00 4.75
9361 22394 1.133136 GGGTGAGTAGAGGGATGGCTA 60.133 57.143 0.00 0.00 0.00 3.93
9362 22395 2.243810 GGTGAGTAGAGGGATGGCTAG 58.756 57.143 0.00 0.00 0.00 3.42
9363 22396 2.243810 GTGAGTAGAGGGATGGCTAGG 58.756 57.143 0.00 0.00 0.00 3.02
9364 22397 1.262417 GAGTAGAGGGATGGCTAGGC 58.738 60.000 9.85 9.85 0.00 3.93
9375 22408 3.550431 GCTAGGCCAGCGATGGGA 61.550 66.667 23.25 0.00 41.37 4.37
9376 22409 2.739784 CTAGGCCAGCGATGGGAG 59.260 66.667 23.25 0.00 0.00 4.30
9377 22410 2.041922 TAGGCCAGCGATGGGAGT 60.042 61.111 23.25 0.00 0.00 3.85
9378 22411 0.827925 CTAGGCCAGCGATGGGAGTA 60.828 60.000 23.25 0.00 0.00 2.59
9379 22412 1.113517 TAGGCCAGCGATGGGAGTAC 61.114 60.000 23.25 3.47 0.00 2.73
9380 22413 2.279517 GCCAGCGATGGGAGTACG 60.280 66.667 23.25 0.00 0.00 3.67
9381 22414 2.417516 CCAGCGATGGGAGTACGG 59.582 66.667 13.14 0.00 0.00 4.02
9382 22415 2.423898 CCAGCGATGGGAGTACGGT 61.424 63.158 13.14 0.00 38.23 4.83
9383 22416 1.226974 CAGCGATGGGAGTACGGTG 60.227 63.158 0.00 0.00 45.70 4.94
9384 22417 1.379443 AGCGATGGGAGTACGGTGA 60.379 57.895 0.00 0.00 36.45 4.02
9385 22418 1.065928 GCGATGGGAGTACGGTGAG 59.934 63.158 0.00 0.00 0.00 3.51
9386 22419 1.065928 CGATGGGAGTACGGTGAGC 59.934 63.158 0.00 0.00 0.00 4.26
9387 22420 1.065928 GATGGGAGTACGGTGAGCG 59.934 63.158 1.13 1.13 0.00 5.03
9388 22421 2.351336 GATGGGAGTACGGTGAGCGG 62.351 65.000 9.43 0.00 0.00 5.52
9389 22422 3.066814 GGGAGTACGGTGAGCGGT 61.067 66.667 9.43 0.00 0.00 5.68
9390 22423 2.181021 GGAGTACGGTGAGCGGTG 59.819 66.667 9.43 0.00 0.00 4.94
9391 22424 2.338015 GGAGTACGGTGAGCGGTGA 61.338 63.158 9.43 0.00 0.00 4.02
9392 22425 1.136984 GAGTACGGTGAGCGGTGAG 59.863 63.158 9.43 0.00 0.00 3.51
9393 22426 2.181021 GTACGGTGAGCGGTGAGG 59.819 66.667 9.43 0.00 0.00 3.86
9394 22427 3.755628 TACGGTGAGCGGTGAGGC 61.756 66.667 9.43 0.00 0.00 4.70
9397 22430 4.767255 GGTGAGCGGTGAGGCCTG 62.767 72.222 12.00 0.00 34.25 4.85
9438 22471 4.154347 GGAGGAGGGAGCACGCAG 62.154 72.222 0.36 0.00 0.00 5.18
9440 22473 3.363844 GAGGAGGGAGCACGCAGTC 62.364 68.421 0.36 0.00 41.61 3.51
9441 22474 4.459089 GGAGGGAGCACGCAGTCC 62.459 72.222 0.36 0.00 41.61 3.85
9459 22492 4.741781 CGCCGGCGCTTGTTTGAG 62.742 66.667 38.48 5.99 0.00 3.02
9466 22499 2.256461 GCTTGTTTGAGCGGCTGG 59.744 61.111 7.50 0.00 32.23 4.85
9467 22500 2.260869 GCTTGTTTGAGCGGCTGGA 61.261 57.895 7.50 0.00 32.23 3.86
9468 22501 1.871772 CTTGTTTGAGCGGCTGGAG 59.128 57.895 7.50 0.00 0.00 3.86
9469 22502 2.192608 CTTGTTTGAGCGGCTGGAGC 62.193 60.000 7.50 0.00 41.14 4.70
9470 22503 2.669569 GTTTGAGCGGCTGGAGCA 60.670 61.111 7.50 0.00 44.36 4.26
9471 22504 2.359107 TTTGAGCGGCTGGAGCAG 60.359 61.111 7.50 0.00 44.36 4.24
9472 22505 3.907260 TTTGAGCGGCTGGAGCAGG 62.907 63.158 7.50 0.00 44.36 4.85
9474 22507 4.087892 GAGCGGCTGGAGCAGGAA 62.088 66.667 7.50 0.00 44.36 3.36
9475 22508 4.093291 AGCGGCTGGAGCAGGAAG 62.093 66.667 0.00 0.00 44.36 3.46
9476 22509 4.087892 GCGGCTGGAGCAGGAAGA 62.088 66.667 0.20 0.00 44.36 2.87
9477 22510 2.186384 CGGCTGGAGCAGGAAGAG 59.814 66.667 0.20 0.00 44.36 2.85
9478 22511 2.124778 GGCTGGAGCAGGAAGAGC 60.125 66.667 0.20 0.00 44.36 4.09
9479 22512 2.667418 GCTGGAGCAGGAAGAGCA 59.333 61.111 0.00 0.00 41.59 4.26
9480 22513 1.449956 GCTGGAGCAGGAAGAGCAG 60.450 63.158 0.00 0.00 41.59 4.24
9481 22514 1.897225 GCTGGAGCAGGAAGAGCAGA 61.897 60.000 0.00 0.00 41.59 4.26
9482 22515 0.176219 CTGGAGCAGGAAGAGCAGAG 59.824 60.000 0.00 0.00 0.00 3.35
9483 22516 0.251967 TGGAGCAGGAAGAGCAGAGA 60.252 55.000 0.00 0.00 0.00 3.10
9484 22517 1.122227 GGAGCAGGAAGAGCAGAGAT 58.878 55.000 0.00 0.00 0.00 2.75
9485 22518 1.485895 GGAGCAGGAAGAGCAGAGATT 59.514 52.381 0.00 0.00 0.00 2.40
9486 22519 2.553086 GAGCAGGAAGAGCAGAGATTG 58.447 52.381 0.00 0.00 0.00 2.67
9487 22520 2.168106 GAGCAGGAAGAGCAGAGATTGA 59.832 50.000 0.00 0.00 0.00 2.57
9488 22521 2.570752 AGCAGGAAGAGCAGAGATTGAA 59.429 45.455 0.00 0.00 0.00 2.69
9489 22522 2.937799 GCAGGAAGAGCAGAGATTGAAG 59.062 50.000 0.00 0.00 0.00 3.02
9490 22523 3.369261 GCAGGAAGAGCAGAGATTGAAGA 60.369 47.826 0.00 0.00 0.00 2.87
9491 22524 4.829968 CAGGAAGAGCAGAGATTGAAGAA 58.170 43.478 0.00 0.00 0.00 2.52
9492 22525 4.871557 CAGGAAGAGCAGAGATTGAAGAAG 59.128 45.833 0.00 0.00 0.00 2.85
9493 22526 3.622612 GGAAGAGCAGAGATTGAAGAAGC 59.377 47.826 0.00 0.00 0.00 3.86
9494 22527 3.977134 AGAGCAGAGATTGAAGAAGCA 57.023 42.857 0.00 0.00 0.00 3.91
9495 22528 3.598299 AGAGCAGAGATTGAAGAAGCAC 58.402 45.455 0.00 0.00 0.00 4.40
9496 22529 2.344950 AGCAGAGATTGAAGAAGCACG 58.655 47.619 0.00 0.00 0.00 5.34
9497 22530 2.028658 AGCAGAGATTGAAGAAGCACGA 60.029 45.455 0.00 0.00 0.00 4.35
9498 22531 2.093467 GCAGAGATTGAAGAAGCACGAC 59.907 50.000 0.00 0.00 0.00 4.34
9499 22532 2.343843 CAGAGATTGAAGAAGCACGACG 59.656 50.000 0.00 0.00 0.00 5.12
9500 22533 1.656095 GAGATTGAAGAAGCACGACGG 59.344 52.381 0.00 0.00 0.00 4.79
9501 22534 0.095417 GATTGAAGAAGCACGACGGC 59.905 55.000 0.00 0.00 0.00 5.68
9502 22535 1.298859 ATTGAAGAAGCACGACGGCC 61.299 55.000 0.00 0.00 0.00 6.13
9503 22536 3.479269 GAAGAAGCACGACGGCCG 61.479 66.667 26.86 26.86 45.44 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 84 5.418676 CCATTTTGAGACGGGCATAAAAAT 58.581 37.500 0.44 0.00 0.00 1.82
92 98 3.392882 GCTGTTTTGACCCCATTTTGAG 58.607 45.455 0.00 0.00 0.00 3.02
188 198 2.933573 TCCAAGACCCTAAACGCAAAA 58.066 42.857 0.00 0.00 0.00 2.44
189 199 2.642154 TCCAAGACCCTAAACGCAAA 57.358 45.000 0.00 0.00 0.00 3.68
192 202 2.163613 CCAAATCCAAGACCCTAAACGC 59.836 50.000 0.00 0.00 0.00 4.84
193 203 3.681593 TCCAAATCCAAGACCCTAAACG 58.318 45.455 0.00 0.00 0.00 3.60
194 204 6.413783 TTTTCCAAATCCAAGACCCTAAAC 57.586 37.500 0.00 0.00 0.00 2.01
260 272 4.614946 ACAAAGTTGATTCAGCAGAAAGC 58.385 39.130 3.25 0.00 46.19 3.51
261 273 6.069684 AGACAAAGTTGATTCAGCAGAAAG 57.930 37.500 3.25 0.00 37.29 2.62
266 278 6.629128 TGAAAAAGACAAAGTTGATTCAGCA 58.371 32.000 3.25 0.00 0.00 4.41
270 282 9.178427 CTCTCATGAAAAAGACAAAGTTGATTC 57.822 33.333 0.00 0.00 0.00 2.52
273 285 6.603201 ACCTCTCATGAAAAAGACAAAGTTGA 59.397 34.615 0.00 0.00 0.00 3.18
274 286 6.694411 CACCTCTCATGAAAAAGACAAAGTTG 59.306 38.462 0.00 0.00 0.00 3.16
277 295 5.218139 GCACCTCTCATGAAAAAGACAAAG 58.782 41.667 0.00 0.00 0.00 2.77
657 687 5.368145 TGGATCAATTAGAGTGCGCTAAAT 58.632 37.500 9.73 0.12 34.33 1.40
661 691 2.988010 TGGATCAATTAGAGTGCGCT 57.012 45.000 9.73 0.00 0.00 5.92
663 693 7.664082 ATTTCTATGGATCAATTAGAGTGCG 57.336 36.000 0.00 0.00 0.00 5.34
676 706 4.801330 TCCGCGTGATATTTCTATGGAT 57.199 40.909 4.92 0.00 0.00 3.41
684 714 2.493035 TGCATGATCCGCGTGATATTT 58.507 42.857 4.92 0.00 35.44 1.40
726 756 4.115199 GGGCTGCCGTTGGATCCT 62.115 66.667 14.23 0.00 0.00 3.24
762 793 2.758434 GCCGGTTAGGGTTTGGGA 59.242 61.111 1.90 0.00 41.48 4.37
781 843 4.643387 GGAGTGCGGCTGTGGGTT 62.643 66.667 0.00 0.00 0.00 4.11
785 847 4.767255 GGGAGGAGTGCGGCTGTG 62.767 72.222 0.00 0.00 0.00 3.66
792 854 3.844090 GAGCCGAGGGAGGAGTGC 61.844 72.222 0.00 0.00 0.00 4.40
936 1067 2.764128 GAGGCGGATGGGGAGACA 60.764 66.667 0.00 0.00 0.00 3.41
1002 1830 0.043940 AGGATGACAGGAAGGAGCCT 59.956 55.000 0.00 0.00 39.37 4.58
1088 2023 3.241530 AGTGCTTGTCCCAGGCGA 61.242 61.111 0.00 0.00 39.36 5.54
1468 5227 0.176680 CAGATTCCACGAGGACCCAG 59.823 60.000 0.00 0.00 45.73 4.45
1486 5245 1.500783 CCAGAGGCTTTCCCCTTCCA 61.501 60.000 0.00 0.00 34.69 3.53
1540 5300 2.040544 CCGAGCCAAAAGGCGTGAT 61.041 57.895 0.19 0.00 40.23 3.06
1672 5711 0.391130 GTCATCCGGCTAAGCACACA 60.391 55.000 0.00 0.00 0.00 3.72
1751 5796 4.950475 CACAATCTAGTCCTACCTCTGTCA 59.050 45.833 0.00 0.00 0.00 3.58
1755 5800 3.982516 TGCACAATCTAGTCCTACCTCT 58.017 45.455 0.00 0.00 0.00 3.69
2396 14974 5.280654 ACATGCACCAGTTGAGAAAAATT 57.719 34.783 0.00 0.00 0.00 1.82
2706 15313 0.465460 TGCAGGACAAACAGGACCAC 60.465 55.000 0.00 0.00 0.00 4.16
2712 15319 2.549754 CACTAACCTGCAGGACAAACAG 59.450 50.000 39.19 23.95 38.94 3.16
2736 15343 2.177888 TGAGCTCCTCCTCCTAATGCTA 59.822 50.000 12.15 0.00 0.00 3.49
2821 15428 3.814504 AAAAAGGATTGGGAGCAGAGA 57.185 42.857 0.00 0.00 0.00 3.10
2944 15551 3.089874 AGGGGCGCTAGGCAATCA 61.090 61.111 7.64 0.00 46.16 2.57
3002 15609 5.515270 GCATCACACACATGATCATCAAAAG 59.485 40.000 4.86 0.00 37.20 2.27
3053 15660 4.478195 CGCTTCATCGACGGACTT 57.522 55.556 0.00 0.00 0.00 3.01
3137 15744 1.076438 TGGACTCACTGGAGAGGAGA 58.924 55.000 0.00 0.00 44.26 3.71
3147 15754 2.856231 AGAGGTAGGAGATGGACTCACT 59.144 50.000 0.00 0.00 46.54 3.41
3185 15792 2.826428 ACAGAGCATGGTATTACAGCG 58.174 47.619 0.00 0.00 0.00 5.18
3271 15882 8.979534 GGTATAACCAGTAGATTATCCCCTAAG 58.020 40.741 0.00 0.00 38.42 2.18
3550 16161 6.877611 AATCTCCGCCGTTAATATCAAAAT 57.122 33.333 0.00 0.00 0.00 1.82
3630 16241 6.111382 GTCCCTAAGAAAATAAGCCTACGTT 58.889 40.000 0.00 0.00 0.00 3.99
4044 16673 5.059955 CCGCGTCAAACAATAATTGGTAAAC 59.940 40.000 4.92 0.00 34.12 2.01
4065 16694 5.103290 TCAATTTGTCTTGTAGAAACCGC 57.897 39.130 0.00 0.00 0.00 5.68
4158 16787 2.693591 CTGTAGTTGAAGATCCCGGCTA 59.306 50.000 0.00 0.00 0.00 3.93
4245 16874 0.692476 ATGCAGTTCAGTACCAGCCA 59.308 50.000 0.00 0.00 0.00 4.75
4298 16927 5.913137 TTGGTTTCTTCTCAAACACATGT 57.087 34.783 0.00 0.00 37.91 3.21
4419 17048 6.127394 CCATGTTGATATTTCATGTTGGGTGA 60.127 38.462 11.75 0.00 37.73 4.02
4502 17132 5.329399 TCTTTGCTAACCACAACCCATATT 58.671 37.500 0.00 0.00 0.00 1.28
4561 17192 2.598394 GCTTTCTGCCACTGCCCA 60.598 61.111 0.00 0.00 36.33 5.36
4802 17433 2.092429 ACTTCAGCAACTTGAGGGTCAA 60.092 45.455 0.00 0.00 34.79 3.18
4997 17658 1.367665 GTGTTCGCTGTTCGTGTGC 60.368 57.895 0.00 0.00 39.67 4.57
4998 17659 1.084290 CGTGTTCGCTGTTCGTGTG 60.084 57.895 0.00 0.00 39.67 3.82
4999 17660 0.802994 TTCGTGTTCGCTGTTCGTGT 60.803 50.000 0.00 0.00 39.67 4.49
5000 17661 0.381428 GTTCGTGTTCGCTGTTCGTG 60.381 55.000 0.00 0.00 39.67 4.35
5001 17662 0.802994 TGTTCGTGTTCGCTGTTCGT 60.803 50.000 0.00 0.00 39.67 3.85
5002 17663 0.381428 GTGTTCGTGTTCGCTGTTCG 60.381 55.000 0.00 0.00 40.15 3.95
5003 17664 0.381428 CGTGTTCGTGTTCGCTGTTC 60.381 55.000 0.00 0.00 36.96 3.18
5004 17665 1.634225 CGTGTTCGTGTTCGCTGTT 59.366 52.632 0.00 0.00 36.96 3.16
5005 17666 3.305623 CGTGTTCGTGTTCGCTGT 58.694 55.556 0.00 0.00 36.96 4.40
5050 17711 3.425713 CGTGAGCTGCGGTGCATT 61.426 61.111 0.00 0.00 38.13 3.56
5073 17734 3.069318 GCTTCCGTCCGGGTCTCT 61.069 66.667 0.00 0.00 37.00 3.10
5146 17810 4.400251 CCAGACGGGGTCCCTCCT 62.400 72.222 8.15 0.00 36.25 3.69
5295 17973 9.489084 CGATCAATTCATCTACCACCTTTTATA 57.511 33.333 0.00 0.00 0.00 0.98
5374 18059 9.598517 TTTAGTCTTTTTCTTGTACGGAAAGTA 57.401 29.630 11.69 6.15 34.73 2.24
5443 18129 5.362143 TGATCCGGAAATTGCCAAATATTCA 59.638 36.000 9.01 0.00 0.00 2.57
5448 18134 4.406649 AGATTGATCCGGAAATTGCCAAAT 59.593 37.500 9.01 0.00 0.00 2.32
5537 18224 6.520272 AGACCGAGATTGATCCAGAAATTAG 58.480 40.000 0.00 0.00 0.00 1.73
5739 18426 7.517734 CGTCGAAACGGTGGATTTTGATATAAT 60.518 37.037 0.00 0.00 45.21 1.28
5839 18528 1.805943 CGATGCTCATGTTGACACCAA 59.194 47.619 0.00 0.00 0.00 3.67
6056 18751 4.390129 TCATTGCTAACCCCCACTTTAA 57.610 40.909 0.00 0.00 0.00 1.52
6110 18814 7.304622 CGTTCGTTACAATATGTAAAATGCAGC 60.305 37.037 4.64 0.00 43.57 5.25
6241 18945 8.009622 TGGATGTATTGCATGTGTATCAAAAT 57.990 30.769 0.00 0.00 38.06 1.82
6382 19095 4.297510 TGTTGCACTCAATTTGTACATGC 58.702 39.130 8.13 8.13 34.29 4.06
6773 19486 0.673985 TGCATATTCTCCGCTAGCGT 59.326 50.000 33.18 18.39 37.81 5.07
7317 20034 3.347958 TGTTGCATCCGTTTTGTTCTC 57.652 42.857 0.00 0.00 0.00 2.87
8025 20755 7.537596 TGTATGTTGACAATTTTCCTCCATT 57.462 32.000 0.00 0.00 0.00 3.16
8314 21045 6.424812 AGCAAATAAAACATTGAAGTTCAGGC 59.575 34.615 5.56 0.00 0.00 4.85
8326 21057 6.752168 ACTGAGAAGCAAGCAAATAAAACAT 58.248 32.000 0.00 0.00 0.00 2.71
8646 21654 7.002250 AGCAGCATGTACATAGAGAATACAT 57.998 36.000 8.32 0.00 39.55 2.29
8692 21700 9.655769 CATATGAAGTAGCATGTACACAATTTC 57.344 33.333 0.00 0.00 0.00 2.17
8746 21768 0.827368 TCCAACTTTGTTTGGGCCAC 59.173 50.000 5.23 0.00 45.49 5.01
8823 21845 7.373778 AGGTCGTGGTCTTTTAATATTCAAC 57.626 36.000 0.00 0.00 0.00 3.18
8838 21860 5.454329 GCCCTTTTATATTCTAGGTCGTGGT 60.454 44.000 0.00 0.00 0.00 4.16
8924 21946 8.531146 CCATTAATTTAGCCCATTTACCCTATG 58.469 37.037 0.00 0.00 0.00 2.23
8928 21960 5.512404 GCCCATTAATTTAGCCCATTTACCC 60.512 44.000 0.00 0.00 0.00 3.69
8930 21962 6.419484 AGCCCATTAATTTAGCCCATTTAC 57.581 37.500 0.00 0.00 0.00 2.01
9017 22050 1.144057 CCCAGACCACGTAGGCATC 59.856 63.158 0.00 0.00 43.14 3.91
9031 22064 1.687146 TCACTAGCAGCCTCCCCAG 60.687 63.158 0.00 0.00 0.00 4.45
9033 22066 2.736826 GGTCACTAGCAGCCTCCCC 61.737 68.421 0.00 0.00 0.00 4.81
9062 22095 0.178533 AAAGGTCGTTGGTTCCACGA 59.821 50.000 10.60 10.60 0.00 4.35
9117 22150 5.738619 ACCAAAAACAGAAGGTCAAAAGT 57.261 34.783 0.00 0.00 0.00 2.66
9148 22181 6.223120 AGGTCATAGTTTTTCATTTGCAACC 58.777 36.000 0.00 0.00 0.00 3.77
9151 22184 6.489700 TGAGAGGTCATAGTTTTTCATTTGCA 59.510 34.615 0.00 0.00 0.00 4.08
9153 22186 7.025963 GCTGAGAGGTCATAGTTTTTCATTTG 58.974 38.462 0.00 0.00 30.18 2.32
9173 22206 0.531532 CCTCACTATTGGCCGCTGAG 60.532 60.000 0.00 3.18 0.00 3.35
9222 22255 0.396811 CTCCGTGTTGTTCCCTTCCT 59.603 55.000 0.00 0.00 0.00 3.36
9223 22256 0.605589 CCTCCGTGTTGTTCCCTTCC 60.606 60.000 0.00 0.00 0.00 3.46
9224 22257 1.235281 GCCTCCGTGTTGTTCCCTTC 61.235 60.000 0.00 0.00 0.00 3.46
9225 22258 1.228154 GCCTCCGTGTTGTTCCCTT 60.228 57.895 0.00 0.00 0.00 3.95
9226 22259 2.397413 CTGCCTCCGTGTTGTTCCCT 62.397 60.000 0.00 0.00 0.00 4.20
9227 22260 1.966451 CTGCCTCCGTGTTGTTCCC 60.966 63.158 0.00 0.00 0.00 3.97
9228 22261 1.966451 CCTGCCTCCGTGTTGTTCC 60.966 63.158 0.00 0.00 0.00 3.62
9229 22262 1.966451 CCCTGCCTCCGTGTTGTTC 60.966 63.158 0.00 0.00 0.00 3.18
9230 22263 1.990160 TTCCCTGCCTCCGTGTTGTT 61.990 55.000 0.00 0.00 0.00 2.83
9231 22264 2.397413 CTTCCCTGCCTCCGTGTTGT 62.397 60.000 0.00 0.00 0.00 3.32
9232 22265 1.672356 CTTCCCTGCCTCCGTGTTG 60.672 63.158 0.00 0.00 0.00 3.33
9233 22266 1.841556 TCTTCCCTGCCTCCGTGTT 60.842 57.895 0.00 0.00 0.00 3.32
9234 22267 2.203788 TCTTCCCTGCCTCCGTGT 60.204 61.111 0.00 0.00 0.00 4.49
9235 22268 2.232298 GAGTCTTCCCTGCCTCCGTG 62.232 65.000 0.00 0.00 0.00 4.94
9236 22269 1.985116 GAGTCTTCCCTGCCTCCGT 60.985 63.158 0.00 0.00 0.00 4.69
9237 22270 2.896443 GAGTCTTCCCTGCCTCCG 59.104 66.667 0.00 0.00 0.00 4.63
9238 22271 2.726351 CCGAGTCTTCCCTGCCTCC 61.726 68.421 0.00 0.00 0.00 4.30
9239 22272 2.896443 CCGAGTCTTCCCTGCCTC 59.104 66.667 0.00 0.00 0.00 4.70
9240 22273 3.394836 GCCGAGTCTTCCCTGCCT 61.395 66.667 0.00 0.00 0.00 4.75
9241 22274 3.672295 CTGCCGAGTCTTCCCTGCC 62.672 68.421 0.00 0.00 0.00 4.85
9242 22275 2.125350 CTGCCGAGTCTTCCCTGC 60.125 66.667 0.00 0.00 0.00 4.85
9243 22276 0.671781 CAACTGCCGAGTCTTCCCTG 60.672 60.000 0.00 0.00 0.00 4.45
9244 22277 1.122019 ACAACTGCCGAGTCTTCCCT 61.122 55.000 0.00 0.00 0.00 4.20
9245 22278 0.250338 AACAACTGCCGAGTCTTCCC 60.250 55.000 0.00 0.00 0.00 3.97
9246 22279 1.531578 GAAACAACTGCCGAGTCTTCC 59.468 52.381 0.00 0.00 0.00 3.46
9247 22280 1.531578 GGAAACAACTGCCGAGTCTTC 59.468 52.381 0.00 0.00 0.00 2.87
9248 22281 1.594331 GGAAACAACTGCCGAGTCTT 58.406 50.000 0.00 0.00 0.00 3.01
9249 22282 0.250338 GGGAAACAACTGCCGAGTCT 60.250 55.000 0.00 0.00 0.00 3.24
9250 22283 0.534203 TGGGAAACAACTGCCGAGTC 60.534 55.000 0.00 0.00 0.00 3.36
9251 22284 0.818040 GTGGGAAACAACTGCCGAGT 60.818 55.000 0.00 0.00 0.00 4.18
9252 22285 1.841663 CGTGGGAAACAACTGCCGAG 61.842 60.000 0.00 0.00 0.00 4.63
9253 22286 1.890041 CGTGGGAAACAACTGCCGA 60.890 57.895 0.00 0.00 0.00 5.54
9254 22287 2.637025 CGTGGGAAACAACTGCCG 59.363 61.111 0.00 0.00 0.00 5.69
9255 22288 2.335011 GCGTGGGAAACAACTGCC 59.665 61.111 0.00 0.00 0.00 4.85
9256 22289 2.051345 CGCGTGGGAAACAACTGC 60.051 61.111 0.00 0.00 0.00 4.40
9257 22290 1.841663 CTCCGCGTGGGAAACAACTG 61.842 60.000 16.49 0.00 46.61 3.16
9258 22291 1.597027 CTCCGCGTGGGAAACAACT 60.597 57.895 16.49 0.00 46.61 3.16
9259 22292 2.613506 CCTCCGCGTGGGAAACAAC 61.614 63.158 16.49 0.00 46.61 3.32
9260 22293 2.281208 CCTCCGCGTGGGAAACAA 60.281 61.111 16.49 0.00 46.61 2.83
9261 22294 4.323477 CCCTCCGCGTGGGAAACA 62.323 66.667 24.74 0.00 46.61 2.83
9267 22300 3.528370 CTACTCCCCTCCGCGTGG 61.528 72.222 9.28 9.28 0.00 4.94
9268 22301 3.528370 CCTACTCCCCTCCGCGTG 61.528 72.222 4.92 0.00 0.00 5.34
9269 22302 3.736224 TCCTACTCCCCTCCGCGT 61.736 66.667 4.92 0.00 0.00 6.01
9270 22303 3.217743 GTCCTACTCCCCTCCGCG 61.218 72.222 0.00 0.00 0.00 6.46
9271 22304 1.829096 GAGTCCTACTCCCCTCCGC 60.829 68.421 0.00 0.00 39.28 5.54
9272 22305 1.138568 TAGAGTCCTACTCCCCTCCG 58.861 60.000 3.49 0.00 46.18 4.63
9273 22306 1.202794 CGTAGAGTCCTACTCCCCTCC 60.203 61.905 3.49 0.00 46.18 4.30
9274 22307 1.767681 TCGTAGAGTCCTACTCCCCTC 59.232 57.143 3.49 0.00 46.18 4.30
9275 22308 1.890552 TCGTAGAGTCCTACTCCCCT 58.109 55.000 3.49 0.00 46.18 4.79
9288 22321 2.489329 CGAACCAGTTAACCCTCGTAGA 59.511 50.000 0.88 0.00 0.00 2.59
9289 22322 2.489329 TCGAACCAGTTAACCCTCGTAG 59.511 50.000 0.88 0.00 0.00 3.51
9290 22323 2.228822 GTCGAACCAGTTAACCCTCGTA 59.771 50.000 0.88 0.00 0.00 3.43
9291 22324 1.000171 GTCGAACCAGTTAACCCTCGT 60.000 52.381 0.88 0.00 0.00 4.18
9292 22325 1.271656 AGTCGAACCAGTTAACCCTCG 59.728 52.381 0.88 6.01 0.00 4.63
9293 22326 2.685100 CAGTCGAACCAGTTAACCCTC 58.315 52.381 0.88 0.00 0.00 4.30
9294 22327 1.270678 GCAGTCGAACCAGTTAACCCT 60.271 52.381 0.88 0.00 0.00 4.34
9295 22328 1.154197 GCAGTCGAACCAGTTAACCC 58.846 55.000 0.88 0.00 0.00 4.11
9296 22329 1.154197 GGCAGTCGAACCAGTTAACC 58.846 55.000 0.88 0.00 0.00 2.85
9297 22330 0.788391 CGGCAGTCGAACCAGTTAAC 59.212 55.000 0.00 0.00 42.43 2.01
9298 22331 0.390124 ACGGCAGTCGAACCAGTTAA 59.610 50.000 0.00 0.00 42.43 2.01
9299 22332 0.038892 GACGGCAGTCGAACCAGTTA 60.039 55.000 0.00 0.00 42.43 2.24
9300 22333 1.300697 GACGGCAGTCGAACCAGTT 60.301 57.895 0.00 0.00 42.43 3.16
9301 22334 2.338984 GACGGCAGTCGAACCAGT 59.661 61.111 0.00 0.00 42.43 4.00
9316 22349 0.459585 TGCTGTTATTCTCCGGCGAC 60.460 55.000 9.30 0.00 0.00 5.19
9317 22350 0.179111 CTGCTGTTATTCTCCGGCGA 60.179 55.000 9.30 0.00 0.00 5.54
9318 22351 1.154205 CCTGCTGTTATTCTCCGGCG 61.154 60.000 0.00 0.00 0.00 6.46
9319 22352 0.107654 ACCTGCTGTTATTCTCCGGC 60.108 55.000 0.00 0.00 0.00 6.13
9320 22353 1.066143 ACACCTGCTGTTATTCTCCGG 60.066 52.381 0.00 0.00 0.00 5.14
9321 22354 2.002586 CACACCTGCTGTTATTCTCCG 58.997 52.381 0.00 0.00 0.00 4.63
9322 22355 2.359900 CCACACCTGCTGTTATTCTCC 58.640 52.381 0.00 0.00 0.00 3.71
9323 22356 2.290323 ACCCACACCTGCTGTTATTCTC 60.290 50.000 0.00 0.00 0.00 2.87
9324 22357 1.705186 ACCCACACCTGCTGTTATTCT 59.295 47.619 0.00 0.00 0.00 2.40
9325 22358 1.812571 CACCCACACCTGCTGTTATTC 59.187 52.381 0.00 0.00 0.00 1.75
9326 22359 1.423541 TCACCCACACCTGCTGTTATT 59.576 47.619 0.00 0.00 0.00 1.40
9327 22360 1.003580 CTCACCCACACCTGCTGTTAT 59.996 52.381 0.00 0.00 0.00 1.89
9328 22361 0.396435 CTCACCCACACCTGCTGTTA 59.604 55.000 0.00 0.00 0.00 2.41
9329 22362 1.149174 CTCACCCACACCTGCTGTT 59.851 57.895 0.00 0.00 0.00 3.16
9330 22363 0.762842 TACTCACCCACACCTGCTGT 60.763 55.000 0.00 0.00 0.00 4.40
9331 22364 0.036952 CTACTCACCCACACCTGCTG 60.037 60.000 0.00 0.00 0.00 4.41
9332 22365 0.178932 TCTACTCACCCACACCTGCT 60.179 55.000 0.00 0.00 0.00 4.24
9333 22366 0.247736 CTCTACTCACCCACACCTGC 59.752 60.000 0.00 0.00 0.00 4.85
9334 22367 0.898320 CCTCTACTCACCCACACCTG 59.102 60.000 0.00 0.00 0.00 4.00
9335 22368 0.252284 CCCTCTACTCACCCACACCT 60.252 60.000 0.00 0.00 0.00 4.00
9336 22369 0.252103 TCCCTCTACTCACCCACACC 60.252 60.000 0.00 0.00 0.00 4.16
9337 22370 1.482593 CATCCCTCTACTCACCCACAC 59.517 57.143 0.00 0.00 0.00 3.82
9338 22371 1.622449 CCATCCCTCTACTCACCCACA 60.622 57.143 0.00 0.00 0.00 4.17
9339 22372 1.123928 CCATCCCTCTACTCACCCAC 58.876 60.000 0.00 0.00 0.00 4.61
9340 22373 0.691078 GCCATCCCTCTACTCACCCA 60.691 60.000 0.00 0.00 0.00 4.51
9341 22374 0.399233 AGCCATCCCTCTACTCACCC 60.399 60.000 0.00 0.00 0.00 4.61
9342 22375 2.243810 CTAGCCATCCCTCTACTCACC 58.756 57.143 0.00 0.00 0.00 4.02
9343 22376 2.243810 CCTAGCCATCCCTCTACTCAC 58.756 57.143 0.00 0.00 0.00 3.51
9344 22377 1.481428 GCCTAGCCATCCCTCTACTCA 60.481 57.143 0.00 0.00 0.00 3.41
9345 22378 1.262417 GCCTAGCCATCCCTCTACTC 58.738 60.000 0.00 0.00 0.00 2.59
9346 22379 3.466714 GCCTAGCCATCCCTCTACT 57.533 57.895 0.00 0.00 0.00 2.57
9359 22392 0.827925 TACTCCCATCGCTGGCCTAG 60.828 60.000 3.32 0.34 41.64 3.02
9360 22393 1.113517 GTACTCCCATCGCTGGCCTA 61.114 60.000 3.32 0.00 41.64 3.93
9361 22394 2.041922 TACTCCCATCGCTGGCCT 60.042 61.111 3.32 0.00 41.64 5.19
9362 22395 2.109181 GTACTCCCATCGCTGGCC 59.891 66.667 0.00 0.00 41.64 5.36
9363 22396 2.279517 CGTACTCCCATCGCTGGC 60.280 66.667 0.00 0.00 41.64 4.85
9364 22397 2.417516 CCGTACTCCCATCGCTGG 59.582 66.667 0.00 0.00 42.73 4.85
9365 22398 1.226974 CACCGTACTCCCATCGCTG 60.227 63.158 0.00 0.00 0.00 5.18
9366 22399 1.379443 TCACCGTACTCCCATCGCT 60.379 57.895 0.00 0.00 0.00 4.93
9367 22400 1.065928 CTCACCGTACTCCCATCGC 59.934 63.158 0.00 0.00 0.00 4.58
9368 22401 1.065928 GCTCACCGTACTCCCATCG 59.934 63.158 0.00 0.00 0.00 3.84
9369 22402 1.065928 CGCTCACCGTACTCCCATC 59.934 63.158 0.00 0.00 0.00 3.51
9370 22403 2.423898 CCGCTCACCGTACTCCCAT 61.424 63.158 0.00 0.00 34.38 4.00
9371 22404 3.066190 CCGCTCACCGTACTCCCA 61.066 66.667 0.00 0.00 34.38 4.37
9372 22405 3.066814 ACCGCTCACCGTACTCCC 61.067 66.667 0.00 0.00 34.38 4.30
9373 22406 2.181021 CACCGCTCACCGTACTCC 59.819 66.667 0.00 0.00 34.38 3.85
9374 22407 1.136984 CTCACCGCTCACCGTACTC 59.863 63.158 0.00 0.00 34.38 2.59
9375 22408 2.341101 CCTCACCGCTCACCGTACT 61.341 63.158 0.00 0.00 34.38 2.73
9376 22409 2.181021 CCTCACCGCTCACCGTAC 59.819 66.667 0.00 0.00 34.38 3.67
9377 22410 3.755628 GCCTCACCGCTCACCGTA 61.756 66.667 0.00 0.00 34.38 4.02
9380 22413 4.767255 CAGGCCTCACCGCTCACC 62.767 72.222 0.00 0.00 46.52 4.02
9421 22454 4.154347 CTGCGTGCTCCCTCCTCC 62.154 72.222 0.00 0.00 0.00 4.30
9422 22455 3.363844 GACTGCGTGCTCCCTCCTC 62.364 68.421 0.00 0.00 0.00 3.71
9423 22456 3.386237 GACTGCGTGCTCCCTCCT 61.386 66.667 0.00 0.00 0.00 3.69
9424 22457 4.459089 GGACTGCGTGCTCCCTCC 62.459 72.222 0.00 0.00 0.00 4.30
9425 22458 4.459089 GGGACTGCGTGCTCCCTC 62.459 72.222 10.98 0.00 42.84 4.30
9442 22475 4.741781 CTCAAACAAGCGCCGGCG 62.742 66.667 43.13 43.13 46.35 6.46
9449 22482 2.192608 CTCCAGCCGCTCAAACAAGC 62.193 60.000 0.00 0.00 38.97 4.01
9450 22483 1.871772 CTCCAGCCGCTCAAACAAG 59.128 57.895 0.00 0.00 0.00 3.16
9451 22484 2.260869 GCTCCAGCCGCTCAAACAA 61.261 57.895 0.00 0.00 34.31 2.83
9452 22485 2.669569 GCTCCAGCCGCTCAAACA 60.670 61.111 0.00 0.00 34.31 2.83
9453 22486 2.669569 TGCTCCAGCCGCTCAAAC 60.670 61.111 0.00 0.00 41.18 2.93
9454 22487 2.359107 CTGCTCCAGCCGCTCAAA 60.359 61.111 0.00 0.00 41.18 2.69
9455 22488 4.399395 CCTGCTCCAGCCGCTCAA 62.399 66.667 0.00 0.00 41.18 3.02
9457 22490 4.087892 TTCCTGCTCCAGCCGCTC 62.088 66.667 0.00 0.00 41.18 5.03
9458 22491 4.093291 CTTCCTGCTCCAGCCGCT 62.093 66.667 0.00 0.00 41.18 5.52
9459 22492 4.087892 TCTTCCTGCTCCAGCCGC 62.088 66.667 0.00 0.00 41.18 6.53
9460 22493 2.186384 CTCTTCCTGCTCCAGCCG 59.814 66.667 0.00 0.00 41.18 5.52
9461 22494 2.124778 GCTCTTCCTGCTCCAGCC 60.125 66.667 0.00 0.00 41.18 4.85
9462 22495 1.449956 CTGCTCTTCCTGCTCCAGC 60.450 63.158 0.00 0.00 42.50 4.85
9463 22496 0.176219 CTCTGCTCTTCCTGCTCCAG 59.824 60.000 0.00 0.00 0.00 3.86
9464 22497 0.251967 TCTCTGCTCTTCCTGCTCCA 60.252 55.000 0.00 0.00 0.00 3.86
9465 22498 1.122227 ATCTCTGCTCTTCCTGCTCC 58.878 55.000 0.00 0.00 0.00 4.70
9466 22499 2.168106 TCAATCTCTGCTCTTCCTGCTC 59.832 50.000 0.00 0.00 0.00 4.26
9467 22500 2.186243 TCAATCTCTGCTCTTCCTGCT 58.814 47.619 0.00 0.00 0.00 4.24
9468 22501 2.687700 TCAATCTCTGCTCTTCCTGC 57.312 50.000 0.00 0.00 0.00 4.85
9469 22502 4.468765 TCTTCAATCTCTGCTCTTCCTG 57.531 45.455 0.00 0.00 0.00 3.86
9470 22503 4.623647 GCTTCTTCAATCTCTGCTCTTCCT 60.624 45.833 0.00 0.00 0.00 3.36
9471 22504 3.622612 GCTTCTTCAATCTCTGCTCTTCC 59.377 47.826 0.00 0.00 0.00 3.46
9472 22505 4.093261 GTGCTTCTTCAATCTCTGCTCTTC 59.907 45.833 0.00 0.00 0.00 2.87
9473 22506 4.002316 GTGCTTCTTCAATCTCTGCTCTT 58.998 43.478 0.00 0.00 0.00 2.85
9474 22507 3.598299 GTGCTTCTTCAATCTCTGCTCT 58.402 45.455 0.00 0.00 0.00 4.09
9475 22508 2.348059 CGTGCTTCTTCAATCTCTGCTC 59.652 50.000 0.00 0.00 0.00 4.26
9476 22509 2.028658 TCGTGCTTCTTCAATCTCTGCT 60.029 45.455 0.00 0.00 0.00 4.24
9477 22510 2.093467 GTCGTGCTTCTTCAATCTCTGC 59.907 50.000 0.00 0.00 0.00 4.26
9478 22511 2.343843 CGTCGTGCTTCTTCAATCTCTG 59.656 50.000 0.00 0.00 0.00 3.35
9479 22512 2.600731 CGTCGTGCTTCTTCAATCTCT 58.399 47.619 0.00 0.00 0.00 3.10
9480 22513 1.656095 CCGTCGTGCTTCTTCAATCTC 59.344 52.381 0.00 0.00 0.00 2.75
9481 22514 1.714794 CCGTCGTGCTTCTTCAATCT 58.285 50.000 0.00 0.00 0.00 2.40
9482 22515 0.095417 GCCGTCGTGCTTCTTCAATC 59.905 55.000 0.00 0.00 0.00 2.67
9483 22516 1.298859 GGCCGTCGTGCTTCTTCAAT 61.299 55.000 0.00 0.00 0.00 2.57
9484 22517 1.959226 GGCCGTCGTGCTTCTTCAA 60.959 57.895 0.00 0.00 0.00 2.69
9485 22518 2.357034 GGCCGTCGTGCTTCTTCA 60.357 61.111 0.00 0.00 0.00 3.02
9486 22519 3.479269 CGGCCGTCGTGCTTCTTC 61.479 66.667 19.50 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.