Multiple sequence alignment - TraesCS7A01G486100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G486100 chr7A 100.000 2963 0 0 1 2963 676361594 676358632 0.000000e+00 5472.0
1 TraesCS7A01G486100 chr7A 95.270 1628 32 12 468 2085 682176315 682174723 0.000000e+00 2538.0
2 TraesCS7A01G486100 chr7A 86.424 987 91 18 1130 2077 676517623 676518605 0.000000e+00 1040.0
3 TraesCS7A01G486100 chr7A 84.919 988 104 22 1130 2077 676539464 676540446 0.000000e+00 957.0
4 TraesCS7A01G486100 chr7A 83.401 988 96 39 534 1482 677387498 677388456 0.000000e+00 854.0
5 TraesCS7A01G486100 chr7A 88.852 610 55 9 1632 2239 682179365 682178767 0.000000e+00 737.0
6 TraesCS7A01G486100 chr7A 88.324 531 45 11 1645 2174 676306145 676306659 3.240000e-174 621.0
7 TraesCS7A01G486100 chr7A 89.605 481 31 13 1 475 682176869 682176402 7.070000e-166 593.0
8 TraesCS7A01G486100 chr7A 86.857 350 22 1 1475 1800 677433468 677433817 1.300000e-98 370.0
9 TraesCS7A01G486100 chr7A 79.580 524 57 23 526 1042 676305662 676306142 2.200000e-86 329.0
10 TraesCS7A01G486100 chr7A 82.075 424 39 16 636 1048 682179752 682179355 7.920000e-86 327.0
11 TraesCS7A01G486100 chr7A 81.221 426 45 16 633 1048 676307872 676308272 7.970000e-81 311.0
12 TraesCS7A01G486100 chr7A 82.824 262 39 6 2702 2963 682178775 682178520 2.300000e-56 230.0
13 TraesCS7A01G486100 chr7A 95.683 139 4 2 1013 1150 676516549 676516686 3.840000e-54 222.0
14 TraesCS7A01G486100 chr7A 89.189 111 12 0 2697 2807 676518813 676518923 3.980000e-29 139.0
15 TraesCS7A01G486100 chr7D 91.317 1785 85 32 467 2201 585666416 585668180 0.000000e+00 2374.0
16 TraesCS7A01G486100 chr7D 88.291 1059 77 23 972 1991 586029335 586030385 0.000000e+00 1225.0
17 TraesCS7A01G486100 chr7D 89.744 546 44 9 1632 2175 585657006 585657541 0.000000e+00 688.0
18 TraesCS7A01G486100 chr7D 89.099 477 39 7 1 466 585665847 585666321 5.510000e-162 580.0
19 TraesCS7A01G486100 chr7D 84.081 446 63 4 2253 2692 13684890 13685333 9.820000e-115 424.0
20 TraesCS7A01G486100 chr7D 81.729 509 56 16 526 1025 585656519 585656999 9.960000e-105 390.0
21 TraesCS7A01G486100 chr7D 86.500 200 25 2 278 475 627876413 627876214 4.970000e-53 219.0
22 TraesCS7A01G486100 chr7D 86.432 199 26 1 278 475 627700541 627700343 1.790000e-52 217.0
23 TraesCS7A01G486100 chr7D 85.930 199 27 1 278 475 627965507 627965309 8.320000e-51 211.0
24 TraesCS7A01G486100 chr7D 88.953 172 15 4 2 172 117242217 117242049 2.990000e-50 209.0
25 TraesCS7A01G486100 chr7D 85.427 199 28 1 278 475 628050584 628050386 3.870000e-49 206.0
26 TraesCS7A01G486100 chr7D 89.381 113 6 4 605 716 585726909 585727016 1.430000e-28 137.0
27 TraesCS7A01G486100 chr7D 86.486 111 15 0 2697 2807 586032269 586032379 4.010000e-24 122.0
28 TraesCS7A01G486100 chr7D 95.455 44 2 0 524 567 585726875 585726918 1.470000e-08 71.3
29 TraesCS7A01G486100 chr7B 90.042 1667 94 34 467 2077 656286282 656287932 0.000000e+00 2093.0
30 TraesCS7A01G486100 chr7B 84.348 1642 115 60 534 2073 656419394 656420995 0.000000e+00 1478.0
31 TraesCS7A01G486100 chr7B 86.864 609 70 8 1632 2239 656275043 656275642 0.000000e+00 673.0
32 TraesCS7A01G486100 chr7B 83.051 531 52 18 526 1048 656274553 656275053 5.830000e-122 448.0
33 TraesCS7A01G486100 chr7B 88.472 373 32 4 1 363 656285504 656285875 9.750000e-120 440.0
34 TraesCS7A01G486100 chr7B 84.130 460 61 8 2242 2695 610857565 610857112 4.540000e-118 435.0
35 TraesCS7A01G486100 chr7B 81.034 348 38 11 526 868 656240542 656240866 4.900000e-63 252.0
36 TraesCS7A01G486100 chr7B 88.288 111 13 0 2697 2807 656288137 656288247 1.850000e-27 134.0
37 TraesCS7A01G486100 chr5D 88.147 464 45 5 2242 2699 135472037 135471578 7.220000e-151 544.0
38 TraesCS7A01G486100 chr5D 85.455 165 20 3 1 161 498084082 498083918 5.080000e-38 169.0
39 TraesCS7A01G486100 chr2D 85.837 466 49 9 2242 2699 590806267 590806723 2.070000e-131 479.0
40 TraesCS7A01G486100 chr2D 84.706 170 17 4 1 161 110844171 110844340 8.500000e-36 161.0
41 TraesCS7A01G486100 chr3B 84.305 446 61 6 2254 2692 13266419 13266862 7.590000e-116 427.0
42 TraesCS7A01G486100 chr3B 88.344 163 16 3 1 161 446748085 446747924 3.010000e-45 193.0
43 TraesCS7A01G486100 chr6B 84.424 443 58 7 2253 2692 64169118 64169552 2.730000e-115 425.0
44 TraesCS7A01G486100 chr1B 83.589 457 68 4 2242 2692 32595848 32595393 3.530000e-114 422.0
45 TraesCS7A01G486100 chr5B 83.370 457 70 3 2242 2692 684218236 684217780 4.570000e-113 418.0
46 TraesCS7A01G486100 chr5B 90.449 178 17 0 292 469 91204359 91204536 4.940000e-58 235.0
47 TraesCS7A01G486100 chr4A 83.151 457 71 3 2242 2692 732788628 732788172 2.130000e-111 412.0
48 TraesCS7A01G486100 chr4A 87.349 166 15 5 1 160 319821494 319821329 5.040000e-43 185.0
49 TraesCS7A01G486100 chr1D 79.676 556 72 29 866 1408 487948935 487949462 2.170000e-96 363.0
50 TraesCS7A01G486100 chr1D 80.747 348 41 10 971 1302 488545624 488545287 6.340000e-62 248.0
51 TraesCS7A01G486100 chr1D 91.011 178 15 1 292 469 486683954 486683778 3.820000e-59 239.0
52 TraesCS7A01G486100 chr1D 86.755 151 18 2 13 161 121770841 121770691 1.830000e-37 167.0
53 TraesCS7A01G486100 chr1A 78.374 578 80 32 866 1408 586949984 586950551 1.700000e-87 333.0
54 TraesCS7A01G486100 chr3A 89.071 183 17 3 289 469 701176873 701177054 1.070000e-54 224.0
55 TraesCS7A01G486100 chr6D 85.714 182 17 5 1 174 388209914 388209734 1.810000e-42 183.0
56 TraesCS7A01G486100 chr4B 77.551 196 31 13 2771 2961 188971076 188970889 4.040000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G486100 chr7A 676358632 676361594 2962 True 5472.000000 5472 100.000000 1 2963 1 chr7A.!!$R1 2962
1 TraesCS7A01G486100 chr7A 676539464 676540446 982 False 957.000000 957 84.919000 1130 2077 1 chr7A.!!$F1 947
2 TraesCS7A01G486100 chr7A 682174723 682179752 5029 True 885.000000 2538 87.725200 1 2963 5 chr7A.!!$R2 2962
3 TraesCS7A01G486100 chr7A 677387498 677388456 958 False 854.000000 854 83.401000 534 1482 1 chr7A.!!$F2 948
4 TraesCS7A01G486100 chr7A 676516549 676518923 2374 False 467.000000 1040 90.432000 1013 2807 3 chr7A.!!$F5 1794
5 TraesCS7A01G486100 chr7A 676305662 676308272 2610 False 420.333333 621 83.041667 526 2174 3 chr7A.!!$F4 1648
6 TraesCS7A01G486100 chr7D 585665847 585668180 2333 False 1477.000000 2374 90.208000 1 2201 2 chr7D.!!$F3 2200
7 TraesCS7A01G486100 chr7D 586029335 586032379 3044 False 673.500000 1225 87.388500 972 2807 2 chr7D.!!$F5 1835
8 TraesCS7A01G486100 chr7D 585656519 585657541 1022 False 539.000000 688 85.736500 526 2175 2 chr7D.!!$F2 1649
9 TraesCS7A01G486100 chr7B 656419394 656420995 1601 False 1478.000000 1478 84.348000 534 2073 1 chr7B.!!$F2 1539
10 TraesCS7A01G486100 chr7B 656285504 656288247 2743 False 889.000000 2093 88.934000 1 2807 3 chr7B.!!$F4 2806
11 TraesCS7A01G486100 chr7B 656274553 656275642 1089 False 560.500000 673 84.957500 526 2239 2 chr7B.!!$F3 1713
12 TraesCS7A01G486100 chr1D 487948935 487949462 527 False 363.000000 363 79.676000 866 1408 1 chr1D.!!$F1 542
13 TraesCS7A01G486100 chr1A 586949984 586950551 567 False 333.000000 333 78.374000 866 1408 1 chr1A.!!$F1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
781 4028 0.759436 ACGCCGGAGTAATCCATCCT 60.759 55.0 9.91 0.0 33.12 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2541 8661 0.1023 AGTTCAAACCTTTGCACCGC 59.898 50.0 0.0 0.0 35.38 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 2959 7.441890 TCTTACATTAAGATCCGTGCAAAAA 57.558 32.000 0.00 0.00 39.73 1.94
161 3051 1.551452 GACTGAGACCTAGCCACACT 58.449 55.000 0.00 0.00 0.00 3.55
163 3053 1.076350 ACTGAGACCTAGCCACACTCT 59.924 52.381 0.00 0.00 0.00 3.24
192 3082 8.798402 TCATTAATTTTAAGATGTTGTTCCGGT 58.202 29.630 0.00 0.00 0.00 5.28
263 3158 0.961019 AGCGGTGATGTGCATGTTTT 59.039 45.000 0.00 0.00 0.00 2.43
271 3166 4.449743 GTGATGTGCATGTTTTTGAGCATT 59.550 37.500 0.00 0.00 39.43 3.56
285 3180 9.211485 GTTTTTGAGCATTTGTACTACTACCTA 57.789 33.333 0.00 0.00 0.00 3.08
305 3200 4.166144 CCTATGTCTGGTTTATTGGTCCCT 59.834 45.833 0.00 0.00 0.00 4.20
330 3225 5.812652 TCGTATTTTGTGTCCAACTTTGAC 58.187 37.500 0.00 0.00 0.00 3.18
336 3231 3.750371 TGTGTCCAACTTTGACCATAGG 58.250 45.455 0.00 0.00 0.00 2.57
617 3834 1.908344 TGCACAGCAAGCATCCTTTA 58.092 45.000 0.00 0.00 37.02 1.85
619 3836 2.827322 TGCACAGCAAGCATCCTTTATT 59.173 40.909 0.00 0.00 37.02 1.40
620 3837 3.258872 TGCACAGCAAGCATCCTTTATTT 59.741 39.130 0.00 0.00 37.02 1.40
621 3838 4.248058 GCACAGCAAGCATCCTTTATTTT 58.752 39.130 0.00 0.00 0.00 1.82
622 3839 4.692155 GCACAGCAAGCATCCTTTATTTTT 59.308 37.500 0.00 0.00 0.00 1.94
623 3840 5.868801 GCACAGCAAGCATCCTTTATTTTTA 59.131 36.000 0.00 0.00 0.00 1.52
669 3897 2.246327 TCCCTCCAAATCCATTTACCCC 59.754 50.000 0.00 0.00 0.00 4.95
670 3898 2.677914 CCTCCAAATCCATTTACCCCC 58.322 52.381 0.00 0.00 0.00 5.40
770 4016 1.804326 CCAAGAACGTACGCCGGAG 60.804 63.158 16.72 3.72 42.24 4.63
781 4028 0.759436 ACGCCGGAGTAATCCATCCT 60.759 55.000 9.91 0.00 33.12 3.24
794 4042 4.899352 ATCCATCCTAAGATTTCCTCCG 57.101 45.455 0.00 0.00 0.00 4.63
809 4057 4.261578 TCCTCCGTTTACAAGTTTCGAT 57.738 40.909 0.00 0.00 0.00 3.59
812 4060 4.433805 CCTCCGTTTACAAGTTTCGATTCG 60.434 45.833 0.00 0.00 0.00 3.34
813 4061 4.297510 TCCGTTTACAAGTTTCGATTCGA 58.702 39.130 4.29 4.29 0.00 3.71
814 4062 4.744137 TCCGTTTACAAGTTTCGATTCGAA 59.256 37.500 17.08 17.08 44.28 3.71
815 4063 5.406175 TCCGTTTACAAGTTTCGATTCGAAT 59.594 36.000 21.09 11.20 45.28 3.34
816 4064 6.585702 TCCGTTTACAAGTTTCGATTCGAATA 59.414 34.615 21.09 8.40 45.28 1.75
932 4217 1.372997 CCCTCGGTCACAGTTCACG 60.373 63.158 0.00 0.00 0.00 4.35
1464 5805 3.054065 CCACCAAGCCTAAGGAAGAGATT 60.054 47.826 0.00 0.00 0.00 2.40
1564 5905 2.813061 CAAGCAACCACAAACAAGAGG 58.187 47.619 0.00 0.00 0.00 3.69
1857 6222 1.002888 CTGACAGACATGAAGTGGGCT 59.997 52.381 0.00 0.00 0.00 5.19
2091 8063 8.274939 TGTGCAAGTAAATTAAAGTACGTACAC 58.725 33.333 26.55 13.43 0.00 2.90
2100 8072 8.733857 AATTAAAGTACGTACACTGACACTAC 57.266 34.615 26.55 0.00 0.00 2.73
2142 8179 5.864418 ATATCTTGGCTACAACCGAAGTA 57.136 39.130 0.00 0.00 32.14 2.24
2146 8183 2.662150 GCTACAACCGAAGTAGGCG 58.338 57.895 9.75 0.00 39.42 5.52
2168 8205 2.994186 ATCTTGGCATTTCCATTGGC 57.006 45.000 0.00 0.00 46.04 4.52
2206 8326 2.536365 ACAATACTCGTGGCACATACG 58.464 47.619 19.09 3.38 44.52 3.06
2218 8338 2.076863 GCACATACGGAGCAAAACTCT 58.923 47.619 0.00 0.00 45.48 3.24
2229 8349 5.548406 GGAGCAAAACTCTCCTACAGTTTA 58.452 41.667 2.01 0.00 45.13 2.01
2232 8352 7.988028 GGAGCAAAACTCTCCTACAGTTTATAT 59.012 37.037 2.01 0.00 45.13 0.86
2240 8360 9.869667 ACTCTCCTACAGTTTATATGTACATCT 57.130 33.333 12.68 5.18 32.02 2.90
2263 8383 3.923017 AACATGTTTTAGAGCACCTGC 57.077 42.857 4.92 0.00 42.49 4.85
2264 8384 2.862541 ACATGTTTTAGAGCACCTGCA 58.137 42.857 0.00 0.00 45.16 4.41
2265 8385 2.554032 ACATGTTTTAGAGCACCTGCAC 59.446 45.455 0.00 0.00 45.16 4.57
2266 8386 1.604604 TGTTTTAGAGCACCTGCACC 58.395 50.000 0.00 0.00 45.16 5.01
2267 8387 1.142870 TGTTTTAGAGCACCTGCACCT 59.857 47.619 0.00 0.00 45.16 4.00
2268 8388 2.370519 TGTTTTAGAGCACCTGCACCTA 59.629 45.455 0.00 0.00 45.16 3.08
2269 8389 3.003480 GTTTTAGAGCACCTGCACCTAG 58.997 50.000 0.00 0.00 45.16 3.02
2270 8390 1.195115 TTAGAGCACCTGCACCTAGG 58.805 55.000 7.41 7.41 45.16 3.02
2271 8391 1.330655 TAGAGCACCTGCACCTAGGC 61.331 60.000 9.30 0.00 45.16 3.93
2272 8392 3.689002 GAGCACCTGCACCTAGGCC 62.689 68.421 9.30 0.00 45.16 5.19
2273 8393 3.721706 GCACCTGCACCTAGGCCT 61.722 66.667 11.78 11.78 41.75 5.19
2274 8394 3.081554 CACCTGCACCTAGGCCTT 58.918 61.111 12.58 0.00 41.75 4.35
2275 8395 1.380302 CACCTGCACCTAGGCCTTT 59.620 57.895 12.58 0.00 41.75 3.11
2276 8396 0.251341 CACCTGCACCTAGGCCTTTT 60.251 55.000 12.58 0.00 41.75 2.27
2277 8397 0.482887 ACCTGCACCTAGGCCTTTTT 59.517 50.000 12.58 0.00 41.75 1.94
2278 8398 1.708551 ACCTGCACCTAGGCCTTTTTA 59.291 47.619 12.58 0.00 41.75 1.52
2279 8399 2.311841 ACCTGCACCTAGGCCTTTTTAT 59.688 45.455 12.58 0.00 41.75 1.40
2280 8400 2.952310 CCTGCACCTAGGCCTTTTTATC 59.048 50.000 12.58 0.00 0.00 1.75
2281 8401 3.372025 CCTGCACCTAGGCCTTTTTATCT 60.372 47.826 12.58 0.00 0.00 1.98
2282 8402 4.141482 CCTGCACCTAGGCCTTTTTATCTA 60.141 45.833 12.58 0.00 0.00 1.98
2283 8403 5.036117 TGCACCTAGGCCTTTTTATCTAG 57.964 43.478 12.58 0.00 0.00 2.43
2284 8404 3.815962 GCACCTAGGCCTTTTTATCTAGC 59.184 47.826 12.58 0.00 0.00 3.42
2285 8405 4.390264 CACCTAGGCCTTTTTATCTAGCC 58.610 47.826 12.58 0.00 44.20 3.93
2286 8406 4.045022 ACCTAGGCCTTTTTATCTAGCCA 58.955 43.478 12.58 0.00 46.35 4.75
2287 8407 4.665483 ACCTAGGCCTTTTTATCTAGCCAT 59.335 41.667 12.58 0.00 46.35 4.40
2288 8408 5.134509 ACCTAGGCCTTTTTATCTAGCCATT 59.865 40.000 12.58 0.00 46.35 3.16
2289 8409 6.071320 CCTAGGCCTTTTTATCTAGCCATTT 58.929 40.000 12.58 0.00 46.35 2.32
2290 8410 7.147195 ACCTAGGCCTTTTTATCTAGCCATTTA 60.147 37.037 12.58 0.00 46.35 1.40
2291 8411 7.890655 CCTAGGCCTTTTTATCTAGCCATTTAT 59.109 37.037 12.58 0.00 46.35 1.40
2292 8412 9.301897 CTAGGCCTTTTTATCTAGCCATTTATT 57.698 33.333 12.58 0.00 46.35 1.40
2293 8413 8.553085 AGGCCTTTTTATCTAGCCATTTATTT 57.447 30.769 0.00 0.00 46.35 1.40
2294 8414 8.642432 AGGCCTTTTTATCTAGCCATTTATTTC 58.358 33.333 0.00 0.00 46.35 2.17
2295 8415 7.872993 GGCCTTTTTATCTAGCCATTTATTTCC 59.127 37.037 0.00 0.00 43.32 3.13
2296 8416 8.642432 GCCTTTTTATCTAGCCATTTATTTCCT 58.358 33.333 0.00 0.00 0.00 3.36
2297 8417 9.971922 CCTTTTTATCTAGCCATTTATTTCCTG 57.028 33.333 0.00 0.00 0.00 3.86
2298 8418 9.468532 CTTTTTATCTAGCCATTTATTTCCTGC 57.531 33.333 0.00 0.00 0.00 4.85
2299 8419 8.532186 TTTTATCTAGCCATTTATTTCCTGCA 57.468 30.769 0.00 0.00 0.00 4.41
2300 8420 8.710749 TTTATCTAGCCATTTATTTCCTGCAT 57.289 30.769 0.00 0.00 0.00 3.96
2301 8421 6.830873 ATCTAGCCATTTATTTCCTGCATC 57.169 37.500 0.00 0.00 0.00 3.91
2302 8422 3.996150 AGCCATTTATTTCCTGCATCG 57.004 42.857 0.00 0.00 0.00 3.84
2303 8423 3.290710 AGCCATTTATTTCCTGCATCGT 58.709 40.909 0.00 0.00 0.00 3.73
2304 8424 3.067180 AGCCATTTATTTCCTGCATCGTG 59.933 43.478 0.00 0.00 0.00 4.35
2305 8425 3.066621 GCCATTTATTTCCTGCATCGTGA 59.933 43.478 0.00 0.00 0.00 4.35
2306 8426 4.261741 GCCATTTATTTCCTGCATCGTGAT 60.262 41.667 0.00 0.00 0.00 3.06
2307 8427 5.737063 GCCATTTATTTCCTGCATCGTGATT 60.737 40.000 0.00 0.00 0.00 2.57
2308 8428 5.916883 CCATTTATTTCCTGCATCGTGATTC 59.083 40.000 0.00 0.00 0.00 2.52
2309 8429 4.794248 TTATTTCCTGCATCGTGATTCG 57.206 40.909 0.00 0.00 41.41 3.34
2310 8430 2.093306 TTTCCTGCATCGTGATTCGT 57.907 45.000 0.00 0.00 40.80 3.85
2311 8431 1.358877 TTCCTGCATCGTGATTCGTG 58.641 50.000 0.00 0.00 40.80 4.35
2312 8432 0.246360 TCCTGCATCGTGATTCGTGT 59.754 50.000 0.00 0.00 40.80 4.49
2313 8433 1.474879 TCCTGCATCGTGATTCGTGTA 59.525 47.619 0.00 0.00 40.80 2.90
2314 8434 2.094442 TCCTGCATCGTGATTCGTGTAA 60.094 45.455 0.00 0.00 40.80 2.41
2315 8435 2.282555 CCTGCATCGTGATTCGTGTAAG 59.717 50.000 0.00 0.00 40.80 2.34
2316 8436 2.923655 CTGCATCGTGATTCGTGTAAGT 59.076 45.455 0.00 0.00 40.80 2.24
2317 8437 3.322369 TGCATCGTGATTCGTGTAAGTT 58.678 40.909 0.00 0.00 40.80 2.66
2318 8438 3.743911 TGCATCGTGATTCGTGTAAGTTT 59.256 39.130 0.00 0.00 40.80 2.66
2319 8439 4.212425 TGCATCGTGATTCGTGTAAGTTTT 59.788 37.500 0.00 0.00 40.80 2.43
2320 8440 4.781528 GCATCGTGATTCGTGTAAGTTTTC 59.218 41.667 0.00 0.00 40.80 2.29
2321 8441 5.389516 GCATCGTGATTCGTGTAAGTTTTCT 60.390 40.000 0.00 0.00 40.80 2.52
2322 8442 6.590357 CATCGTGATTCGTGTAAGTTTTCTT 58.410 36.000 0.00 0.00 40.85 2.52
2323 8443 6.592798 TCGTGATTCGTGTAAGTTTTCTTT 57.407 33.333 0.00 0.00 39.64 2.52
2324 8444 7.007313 TCGTGATTCGTGTAAGTTTTCTTTT 57.993 32.000 0.00 0.00 39.64 2.27
2325 8445 7.465989 TCGTGATTCGTGTAAGTTTTCTTTTT 58.534 30.769 0.00 0.00 39.64 1.94
2352 8472 9.591792 TGTTTCTCTCATATAGAACATGTCTTG 57.408 33.333 0.00 0.00 37.84 3.02
2353 8473 9.593134 GTTTCTCTCATATAGAACATGTCTTGT 57.407 33.333 0.00 0.00 41.53 3.16
2356 8476 9.634021 TCTCTCATATAGAACATGTCTTGTAGT 57.366 33.333 0.00 0.00 37.68 2.73
2364 8484 9.950496 ATAGAACATGTCTTGTAGTTCAAATCT 57.050 29.630 0.00 0.00 42.01 2.40
2365 8485 8.682936 AGAACATGTCTTGTAGTTCAAATCTT 57.317 30.769 0.00 0.00 42.01 2.40
2366 8486 9.125026 AGAACATGTCTTGTAGTTCAAATCTTT 57.875 29.630 0.00 0.00 42.01 2.52
2367 8487 9.173939 GAACATGTCTTGTAGTTCAAATCTTTG 57.826 33.333 0.00 0.00 39.95 2.77
2368 8488 7.141363 ACATGTCTTGTAGTTCAAATCTTTGC 58.859 34.615 0.00 0.00 36.57 3.68
2369 8489 6.691754 TGTCTTGTAGTTCAAATCTTTGCA 57.308 33.333 0.00 0.00 38.05 4.08
2370 8490 6.728200 TGTCTTGTAGTTCAAATCTTTGCAG 58.272 36.000 0.00 0.00 38.05 4.41
2371 8491 6.542005 TGTCTTGTAGTTCAAATCTTTGCAGA 59.458 34.615 0.00 0.00 38.05 4.26
2372 8492 7.066887 TGTCTTGTAGTTCAAATCTTTGCAGAA 59.933 33.333 0.00 0.00 38.05 3.02
2373 8493 7.377131 GTCTTGTAGTTCAAATCTTTGCAGAAC 59.623 37.037 4.96 4.96 38.05 3.01
2374 8494 6.691754 TGTAGTTCAAATCTTTGCAGAACA 57.308 33.333 13.27 0.00 38.05 3.18
2375 8495 7.094508 TGTAGTTCAAATCTTTGCAGAACAA 57.905 32.000 13.27 0.00 38.05 2.83
2376 8496 6.972328 TGTAGTTCAAATCTTTGCAGAACAAC 59.028 34.615 13.27 0.00 38.23 3.32
2377 8497 5.964758 AGTTCAAATCTTTGCAGAACAACA 58.035 33.333 13.27 0.00 38.23 3.33
2378 8498 6.397272 AGTTCAAATCTTTGCAGAACAACAA 58.603 32.000 13.27 0.00 38.23 2.83
2379 8499 6.873076 AGTTCAAATCTTTGCAGAACAACAAA 59.127 30.769 13.27 0.00 38.23 2.83
2386 8506 6.710692 CTTTGCAGAACAACAAAGTTTTCT 57.289 33.333 7.20 0.00 44.90 2.52
2387 8507 7.810766 CTTTGCAGAACAACAAAGTTTTCTA 57.189 32.000 7.20 0.00 44.90 2.10
2388 8508 8.238481 CTTTGCAGAACAACAAAGTTTTCTAA 57.762 30.769 7.20 0.00 44.90 2.10
2389 8509 7.575332 TTGCAGAACAACAAAGTTTTCTAAC 57.425 32.000 0.00 0.00 31.73 2.34
2390 8510 6.919721 TGCAGAACAACAAAGTTTTCTAACT 58.080 32.000 0.00 0.00 46.44 2.24
2391 8511 8.046294 TGCAGAACAACAAAGTTTTCTAACTA 57.954 30.769 0.00 0.00 43.74 2.24
2392 8512 8.181573 TGCAGAACAACAAAGTTTTCTAACTAG 58.818 33.333 0.00 0.00 43.74 2.57
2393 8513 8.395633 GCAGAACAACAAAGTTTTCTAACTAGA 58.604 33.333 0.00 0.00 43.74 2.43
2510 8630 9.617523 ATGTCAAACCAAAATTTCTGAAAGATT 57.382 25.926 8.95 3.91 46.36 2.40
2511 8631 9.447157 TGTCAAACCAAAATTTCTGAAAGATTT 57.553 25.926 8.95 9.31 46.36 2.17
2539 8659 8.947115 TCCTAGATTCTAGTTAAAAAGCTTTGC 58.053 33.333 13.54 3.98 0.00 3.68
2540 8660 8.184848 CCTAGATTCTAGTTAAAAAGCTTTGCC 58.815 37.037 13.54 1.12 0.00 4.52
2541 8661 6.612306 AGATTCTAGTTAAAAAGCTTTGCCG 58.388 36.000 13.54 0.00 0.00 5.69
2542 8662 4.155310 TCTAGTTAAAAAGCTTTGCCGC 57.845 40.909 13.54 4.34 0.00 6.53
2543 8663 1.766069 AGTTAAAAAGCTTTGCCGCG 58.234 45.000 13.54 0.00 34.40 6.46
2544 8664 0.781787 GTTAAAAAGCTTTGCCGCGG 59.218 50.000 24.05 24.05 34.40 6.46
2545 8665 0.386113 TTAAAAAGCTTTGCCGCGGT 59.614 45.000 28.70 1.40 34.40 5.68
2546 8666 0.318275 TAAAAAGCTTTGCCGCGGTG 60.318 50.000 28.70 15.43 34.40 4.94
2547 8667 4.645921 AAAGCTTTGCCGCGGTGC 62.646 61.111 28.70 23.86 34.40 5.01
2555 8675 4.279043 GCCGCGGTGCAAAGGTTT 62.279 61.111 28.70 0.00 0.00 3.27
2556 8676 2.354539 CCGCGGTGCAAAGGTTTG 60.355 61.111 19.50 0.00 41.03 2.93
2557 8677 2.718731 CGCGGTGCAAAGGTTTGA 59.281 55.556 6.63 0.00 40.55 2.69
2558 8678 1.064946 CGCGGTGCAAAGGTTTGAA 59.935 52.632 6.63 0.00 40.55 2.69
2559 8679 1.206115 CGCGGTGCAAAGGTTTGAAC 61.206 55.000 6.63 5.85 44.37 3.18
2560 8680 0.102300 GCGGTGCAAAGGTTTGAACT 59.898 50.000 12.38 0.00 44.48 3.01
2561 8681 1.470805 GCGGTGCAAAGGTTTGAACTT 60.471 47.619 12.38 0.00 44.48 2.66
2562 8682 2.459934 CGGTGCAAAGGTTTGAACTTC 58.540 47.619 12.38 0.00 44.48 3.01
2563 8683 2.159310 CGGTGCAAAGGTTTGAACTTCA 60.159 45.455 12.38 0.00 44.48 3.02
2564 8684 3.674682 CGGTGCAAAGGTTTGAACTTCAA 60.675 43.478 12.38 0.00 44.48 2.69
2565 8685 4.249661 GGTGCAAAGGTTTGAACTTCAAA 58.750 39.130 12.12 12.12 44.48 2.69
2566 8686 4.693095 GGTGCAAAGGTTTGAACTTCAAAA 59.307 37.500 16.79 0.00 46.53 2.44
2626 8746 7.402811 TTCATGTAGAAAGTTAGTTGTGTCG 57.597 36.000 0.00 0.00 32.05 4.35
2627 8747 5.404366 TCATGTAGAAAGTTAGTTGTGTCGC 59.596 40.000 0.00 0.00 0.00 5.19
2628 8748 4.684877 TGTAGAAAGTTAGTTGTGTCGCA 58.315 39.130 0.00 0.00 0.00 5.10
2629 8749 4.505191 TGTAGAAAGTTAGTTGTGTCGCAC 59.495 41.667 3.44 3.44 34.56 5.34
2630 8750 3.527533 AGAAAGTTAGTTGTGTCGCACA 58.472 40.909 8.32 8.32 43.02 4.57
2631 8751 4.127171 AGAAAGTTAGTTGTGTCGCACAT 58.873 39.130 12.33 3.24 44.16 3.21
2632 8752 5.294356 AGAAAGTTAGTTGTGTCGCACATA 58.706 37.500 12.33 2.42 44.16 2.29
2633 8753 5.932303 AGAAAGTTAGTTGTGTCGCACATAT 59.068 36.000 12.33 7.69 44.16 1.78
2634 8754 5.779806 AAGTTAGTTGTGTCGCACATATC 57.220 39.130 12.33 7.49 44.16 1.63
2635 8755 5.073311 AGTTAGTTGTGTCGCACATATCT 57.927 39.130 12.33 12.60 44.16 1.98
2636 8756 5.479306 AGTTAGTTGTGTCGCACATATCTT 58.521 37.500 12.33 2.24 44.16 2.40
2637 8757 6.627243 AGTTAGTTGTGTCGCACATATCTTA 58.373 36.000 12.33 4.98 44.16 2.10
2638 8758 7.094631 AGTTAGTTGTGTCGCACATATCTTAA 58.905 34.615 12.33 6.06 44.16 1.85
2639 8759 7.601130 AGTTAGTTGTGTCGCACATATCTTAAA 59.399 33.333 12.33 3.90 44.16 1.52
2640 8760 6.408858 AGTTGTGTCGCACATATCTTAAAG 57.591 37.500 12.33 0.00 44.16 1.85
2641 8761 4.857871 TGTGTCGCACATATCTTAAAGC 57.142 40.909 8.32 0.00 39.62 3.51
2642 8762 3.305897 TGTGTCGCACATATCTTAAAGCG 59.694 43.478 8.32 0.00 39.62 4.68
2649 8769 6.048073 GCACATATCTTAAAGCGACATTGA 57.952 37.500 0.00 0.00 0.00 2.57
2650 8770 6.486248 GCACATATCTTAAAGCGACATTGAA 58.514 36.000 0.00 0.00 0.00 2.69
2651 8771 6.630443 GCACATATCTTAAAGCGACATTGAAG 59.370 38.462 0.00 0.00 0.00 3.02
2652 8772 7.465916 GCACATATCTTAAAGCGACATTGAAGA 60.466 37.037 0.00 0.00 0.00 2.87
2653 8773 8.060679 CACATATCTTAAAGCGACATTGAAGAG 58.939 37.037 0.00 0.00 0.00 2.85
2654 8774 7.766278 ACATATCTTAAAGCGACATTGAAGAGT 59.234 33.333 0.00 0.00 0.00 3.24
2655 8775 6.654793 ATCTTAAAGCGACATTGAAGAGTC 57.345 37.500 0.00 0.00 0.00 3.36
2656 8776 5.538118 TCTTAAAGCGACATTGAAGAGTCA 58.462 37.500 0.00 0.00 34.48 3.41
2657 8777 5.635280 TCTTAAAGCGACATTGAAGAGTCAG 59.365 40.000 0.00 0.00 34.49 3.51
2658 8778 3.667497 AAGCGACATTGAAGAGTCAGA 57.333 42.857 0.00 0.00 34.49 3.27
2659 8779 3.667497 AGCGACATTGAAGAGTCAGAA 57.333 42.857 0.00 0.00 34.49 3.02
2660 8780 4.199432 AGCGACATTGAAGAGTCAGAAT 57.801 40.909 0.00 0.00 34.49 2.40
2661 8781 5.330455 AGCGACATTGAAGAGTCAGAATA 57.670 39.130 0.00 0.00 34.49 1.75
2662 8782 5.347342 AGCGACATTGAAGAGTCAGAATAG 58.653 41.667 0.00 0.00 34.49 1.73
2663 8783 4.026145 GCGACATTGAAGAGTCAGAATAGC 60.026 45.833 0.00 0.00 34.49 2.97
2664 8784 5.105063 CGACATTGAAGAGTCAGAATAGCA 58.895 41.667 0.00 0.00 34.49 3.49
2665 8785 5.231779 CGACATTGAAGAGTCAGAATAGCAG 59.768 44.000 0.00 0.00 34.49 4.24
2666 8786 5.426504 ACATTGAAGAGTCAGAATAGCAGG 58.573 41.667 0.00 0.00 34.49 4.85
2667 8787 4.478206 TTGAAGAGTCAGAATAGCAGGG 57.522 45.455 0.00 0.00 34.49 4.45
2668 8788 2.169352 TGAAGAGTCAGAATAGCAGGGC 59.831 50.000 0.00 0.00 0.00 5.19
2669 8789 1.127343 AGAGTCAGAATAGCAGGGCC 58.873 55.000 0.00 0.00 0.00 5.80
2670 8790 0.249657 GAGTCAGAATAGCAGGGCCG 60.250 60.000 0.00 0.00 0.00 6.13
2671 8791 1.227674 GTCAGAATAGCAGGGCCGG 60.228 63.158 0.00 0.00 0.00 6.13
2672 8792 2.111878 CAGAATAGCAGGGCCGGG 59.888 66.667 2.18 0.00 0.00 5.73
2673 8793 3.171388 AGAATAGCAGGGCCGGGG 61.171 66.667 2.18 0.00 0.00 5.73
2674 8794 3.489513 GAATAGCAGGGCCGGGGT 61.490 66.667 2.18 7.00 0.00 4.95
2675 8795 3.774599 GAATAGCAGGGCCGGGGTG 62.775 68.421 2.18 0.00 0.00 4.61
2677 8797 3.707025 ATAGCAGGGCCGGGGTGTA 62.707 63.158 2.18 0.00 0.00 2.90
2684 8804 4.468689 GCCGGGGTGTAGGTGCTC 62.469 72.222 2.18 0.00 0.00 4.26
2685 8805 3.000819 CCGGGGTGTAGGTGCTCA 61.001 66.667 0.00 0.00 0.00 4.26
2686 8806 2.589157 CCGGGGTGTAGGTGCTCAA 61.589 63.158 0.00 0.00 0.00 3.02
2687 8807 1.373435 CGGGGTGTAGGTGCTCAAA 59.627 57.895 0.00 0.00 0.00 2.69
2688 8808 0.250553 CGGGGTGTAGGTGCTCAAAA 60.251 55.000 0.00 0.00 0.00 2.44
2689 8809 1.816183 CGGGGTGTAGGTGCTCAAAAA 60.816 52.381 0.00 0.00 0.00 1.94
2722 9476 9.371136 GTCTGTATGTACATATATCCATGGTTG 57.629 37.037 18.27 5.83 35.36 3.77
2725 9479 8.032451 TGTATGTACATATATCCATGGTTGTCG 58.968 37.037 18.27 0.00 0.00 4.35
2728 9482 3.327757 ACATATATCCATGGTTGTCGGCT 59.672 43.478 12.58 0.00 0.00 5.52
2766 9520 4.878439 CGATGATTCATTGCATTTGGGAT 58.122 39.130 0.00 0.00 0.00 3.85
2776 9530 1.758280 GCATTTGGGATCATGCCTTCA 59.242 47.619 0.00 0.00 40.04 3.02
2803 9557 5.020132 CACTAGGAGAAGGAAGAGGAGAAA 58.980 45.833 0.00 0.00 0.00 2.52
2807 9561 4.042311 AGGAGAAGGAAGAGGAGAAAAACC 59.958 45.833 0.00 0.00 0.00 3.27
2810 9564 2.428901 AGGAAGAGGAGAAAAACCCCA 58.571 47.619 0.00 0.00 0.00 4.96
2811 9565 2.996742 AGGAAGAGGAGAAAAACCCCAT 59.003 45.455 0.00 0.00 0.00 4.00
2812 9566 3.402708 AGGAAGAGGAGAAAAACCCCATT 59.597 43.478 0.00 0.00 0.00 3.16
2813 9567 4.140686 AGGAAGAGGAGAAAAACCCCATTT 60.141 41.667 0.00 0.00 0.00 2.32
2814 9568 5.075900 AGGAAGAGGAGAAAAACCCCATTTA 59.924 40.000 0.00 0.00 0.00 1.40
2815 9569 5.185249 GGAAGAGGAGAAAAACCCCATTTAC 59.815 44.000 0.00 0.00 0.00 2.01
2817 9571 5.077564 AGAGGAGAAAAACCCCATTTACAC 58.922 41.667 0.00 0.00 0.00 2.90
2818 9572 4.810345 AGGAGAAAAACCCCATTTACACA 58.190 39.130 0.00 0.00 0.00 3.72
2819 9573 5.212745 AGGAGAAAAACCCCATTTACACAA 58.787 37.500 0.00 0.00 0.00 3.33
2820 9574 5.663556 AGGAGAAAAACCCCATTTACACAAA 59.336 36.000 0.00 0.00 0.00 2.83
2822 9576 6.824196 GGAGAAAAACCCCATTTACACAAAAA 59.176 34.615 0.00 0.00 0.00 1.94
2841 9595 1.187567 AAGTGCTCAAACCATGGCCC 61.188 55.000 13.04 0.00 0.00 5.80
2842 9596 1.907807 GTGCTCAAACCATGGCCCA 60.908 57.895 13.04 0.00 0.00 5.36
2858 9612 3.439494 CCATGGTGGGCGAATTTTG 57.561 52.632 2.57 0.00 32.67 2.44
2859 9613 0.740516 CCATGGTGGGCGAATTTTGC 60.741 55.000 2.57 0.00 32.67 3.68
2868 9622 2.894307 GCGAATTTTGCCTACGTTCT 57.106 45.000 0.00 0.00 0.00 3.01
2869 9623 2.770532 GCGAATTTTGCCTACGTTCTC 58.229 47.619 0.00 0.00 0.00 2.87
2870 9624 2.783316 GCGAATTTTGCCTACGTTCTCG 60.783 50.000 0.00 0.00 43.34 4.04
2873 9627 2.806608 TTTTGCCTACGTTCTCGACT 57.193 45.000 0.00 0.00 40.62 4.18
2874 9628 2.342910 TTTGCCTACGTTCTCGACTC 57.657 50.000 0.00 0.00 40.62 3.36
2876 9630 0.322277 TGCCTACGTTCTCGACTCCT 60.322 55.000 0.00 0.00 40.62 3.69
2877 9631 0.810016 GCCTACGTTCTCGACTCCTT 59.190 55.000 0.00 0.00 40.62 3.36
2880 9634 2.683867 CCTACGTTCTCGACTCCTTCAT 59.316 50.000 0.00 0.00 40.62 2.57
2881 9635 3.128938 CCTACGTTCTCGACTCCTTCATT 59.871 47.826 0.00 0.00 40.62 2.57
2882 9636 2.947852 ACGTTCTCGACTCCTTCATTG 58.052 47.619 0.00 0.00 40.62 2.82
2883 9637 1.656095 CGTTCTCGACTCCTTCATTGC 59.344 52.381 0.00 0.00 39.71 3.56
2884 9638 2.688507 GTTCTCGACTCCTTCATTGCA 58.311 47.619 0.00 0.00 0.00 4.08
2887 9641 0.317160 TCGACTCCTTCATTGCACGT 59.683 50.000 0.00 0.00 0.00 4.49
2888 9642 0.439985 CGACTCCTTCATTGCACGTG 59.560 55.000 12.28 12.28 0.00 4.49
2889 9643 1.512926 GACTCCTTCATTGCACGTGT 58.487 50.000 18.38 0.00 0.00 4.49
2890 9644 2.683968 GACTCCTTCATTGCACGTGTA 58.316 47.619 18.38 10.46 0.00 2.90
2891 9645 2.412089 GACTCCTTCATTGCACGTGTAC 59.588 50.000 18.38 1.32 0.00 2.90
2892 9646 1.390123 CTCCTTCATTGCACGTGTACG 59.610 52.381 18.38 6.66 46.33 3.67
2902 9656 4.528002 CGTGTACGTCTTGCTCGT 57.472 55.556 0.00 0.00 43.86 4.18
2903 9657 2.792374 CGTGTACGTCTTGCTCGTT 58.208 52.632 0.00 0.00 41.72 3.85
2904 9658 1.954437 CGTGTACGTCTTGCTCGTTA 58.046 50.000 0.00 0.00 41.72 3.18
2905 9659 2.309693 CGTGTACGTCTTGCTCGTTAA 58.690 47.619 0.00 0.00 41.72 2.01
2907 9661 3.558505 GTGTACGTCTTGCTCGTTAAGA 58.441 45.455 0.00 0.00 41.72 2.10
2913 9667 3.903360 GTCTTGCTCGTTAAGACTCTGT 58.097 45.455 16.32 0.00 46.53 3.41
2916 9670 4.218635 TCTTGCTCGTTAAGACTCTGTCAT 59.781 41.667 0.46 0.00 34.60 3.06
2917 9671 5.414765 TCTTGCTCGTTAAGACTCTGTCATA 59.585 40.000 0.46 0.00 34.60 2.15
2918 9672 5.836821 TGCTCGTTAAGACTCTGTCATAT 57.163 39.130 0.46 0.00 34.60 1.78
2919 9673 6.208988 TGCTCGTTAAGACTCTGTCATATT 57.791 37.500 0.46 0.00 34.60 1.28
2921 9675 7.194278 TGCTCGTTAAGACTCTGTCATATTAC 58.806 38.462 0.46 0.00 34.60 1.89
2922 9676 7.067129 TGCTCGTTAAGACTCTGTCATATTACT 59.933 37.037 0.46 0.00 34.60 2.24
2923 9677 7.916450 GCTCGTTAAGACTCTGTCATATTACTT 59.084 37.037 0.46 0.00 34.60 2.24
2924 9678 9.790389 CTCGTTAAGACTCTGTCATATTACTTT 57.210 33.333 0.46 0.00 34.60 2.66
2929 9683 8.553459 AAGACTCTGTCATATTACTTTTGTGG 57.447 34.615 0.46 0.00 34.60 4.17
2936 9889 9.166173 CTGTCATATTACTTTTGTGGATCTTGA 57.834 33.333 0.00 0.00 0.00 3.02
2937 9890 9.166173 TGTCATATTACTTTTGTGGATCTTGAG 57.834 33.333 0.00 0.00 0.00 3.02
2938 9891 9.167311 GTCATATTACTTTTGTGGATCTTGAGT 57.833 33.333 0.00 0.00 0.00 3.41
2940 9893 8.616076 CATATTACTTTTGTGGATCTTGAGTCC 58.384 37.037 0.00 0.00 36.26 3.85
2942 9895 4.792068 ACTTTTGTGGATCTTGAGTCCAA 58.208 39.130 0.00 0.00 46.67 3.53
2957 9910 3.028130 AGTCCAAGACCTTAGCTAGCTC 58.972 50.000 23.26 6.66 32.18 4.09
2958 9911 2.761208 GTCCAAGACCTTAGCTAGCTCA 59.239 50.000 23.26 9.92 0.00 4.26
2959 9912 3.386402 GTCCAAGACCTTAGCTAGCTCAT 59.614 47.826 23.26 4.98 0.00 2.90
2960 9913 3.386078 TCCAAGACCTTAGCTAGCTCATG 59.614 47.826 23.26 10.23 0.00 3.07
2961 9914 3.494048 CCAAGACCTTAGCTAGCTCATGG 60.494 52.174 23.26 22.24 0.00 3.66
2962 9915 3.320610 AGACCTTAGCTAGCTCATGGA 57.679 47.619 23.26 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 3003 7.453393 TGAGATTTAACCAAGTCTCAGTCAAT 58.547 34.615 8.09 0.00 46.61 2.57
187 3077 4.960469 ACACCTCTGAGATATTAAACCGGA 59.040 41.667 9.46 0.00 0.00 5.14
263 3158 8.074613 ACATAGGTAGTAGTACAAATGCTCAA 57.925 34.615 16.00 0.00 30.96 3.02
271 3166 9.705103 ATAAACCAGACATAGGTAGTAGTACAA 57.295 33.333 9.89 0.00 38.76 2.41
285 3180 4.675063 AAGGGACCAATAAACCAGACAT 57.325 40.909 0.00 0.00 0.00 3.06
305 3200 6.748198 GTCAAAGTTGGACACAAAATACGAAA 59.252 34.615 5.46 0.00 38.54 3.46
567 3770 0.744414 GCAGGCAAGCCAACTCGATA 60.744 55.000 14.40 0.00 38.92 2.92
617 3834 9.259832 AGCTATGGAGGTGAAGAAAATAAAAAT 57.740 29.630 0.00 0.00 30.28 1.82
619 3836 9.396022 CTAGCTATGGAGGTGAAGAAAATAAAA 57.604 33.333 0.00 0.00 34.50 1.52
620 3837 7.499232 GCTAGCTATGGAGGTGAAGAAAATAAA 59.501 37.037 7.70 0.00 34.50 1.40
621 3838 6.992715 GCTAGCTATGGAGGTGAAGAAAATAA 59.007 38.462 7.70 0.00 34.50 1.40
622 3839 6.327626 AGCTAGCTATGGAGGTGAAGAAAATA 59.672 38.462 17.69 0.00 34.50 1.40
623 3840 5.131809 AGCTAGCTATGGAGGTGAAGAAAAT 59.868 40.000 17.69 0.00 34.50 1.82
670 3898 2.440247 GGGATCTTTGTGCGGGGG 60.440 66.667 0.00 0.00 0.00 5.40
671 3899 0.254747 TAAGGGATCTTTGTGCGGGG 59.745 55.000 0.00 0.00 34.59 5.73
770 4016 6.166982 CGGAGGAAATCTTAGGATGGATTAC 58.833 44.000 0.00 0.00 32.65 1.89
781 4028 7.095523 CGAAACTTGTAAACGGAGGAAATCTTA 60.096 37.037 0.00 0.00 0.00 2.10
932 4217 1.737793 GATTGGTCGGTTGATGGTGTC 59.262 52.381 0.00 0.00 0.00 3.67
1464 5805 0.842030 ACACATCCTCCTCCTTGGCA 60.842 55.000 0.00 0.00 35.26 4.92
1857 6222 1.367471 CTTCTCCACCACGCTGTCA 59.633 57.895 0.00 0.00 0.00 3.58
2085 8057 6.996562 TTATGTTTGTAGTGTCAGTGTACG 57.003 37.500 0.00 0.00 0.00 3.67
2091 8063 8.773645 TGATTGACTTTATGTTTGTAGTGTCAG 58.226 33.333 0.00 0.00 35.17 3.51
2126 8163 0.248289 GCCTACTTCGGTTGTAGCCA 59.752 55.000 0.00 0.00 36.86 4.75
2142 8179 1.478105 GGAAATGCCAAGATTTCGCCT 59.522 47.619 0.00 0.00 41.44 5.52
2240 8360 5.300539 TGCAGGTGCTCTAAAACATGTTTTA 59.699 36.000 31.62 31.62 41.22 1.52
2241 8361 4.099266 TGCAGGTGCTCTAAAACATGTTTT 59.901 37.500 32.63 32.63 42.39 2.43
2242 8362 3.636300 TGCAGGTGCTCTAAAACATGTTT 59.364 39.130 18.13 18.13 42.66 2.83
2243 8363 3.004734 GTGCAGGTGCTCTAAAACATGTT 59.995 43.478 4.92 4.92 42.66 2.71
2244 8364 2.554032 GTGCAGGTGCTCTAAAACATGT 59.446 45.455 3.18 0.00 42.66 3.21
2245 8365 2.095059 GGTGCAGGTGCTCTAAAACATG 60.095 50.000 3.18 0.00 42.66 3.21
2246 8366 2.162681 GGTGCAGGTGCTCTAAAACAT 58.837 47.619 3.18 0.00 42.66 2.71
2247 8367 1.142870 AGGTGCAGGTGCTCTAAAACA 59.857 47.619 3.18 0.00 42.66 2.83
2248 8368 1.897560 AGGTGCAGGTGCTCTAAAAC 58.102 50.000 3.18 0.00 42.66 2.43
2249 8369 2.027192 CCTAGGTGCAGGTGCTCTAAAA 60.027 50.000 0.00 0.00 42.66 1.52
2250 8370 1.555075 CCTAGGTGCAGGTGCTCTAAA 59.445 52.381 0.00 0.00 42.66 1.85
2251 8371 1.195115 CCTAGGTGCAGGTGCTCTAA 58.805 55.000 0.00 0.00 42.66 2.10
2252 8372 1.330655 GCCTAGGTGCAGGTGCTCTA 61.331 60.000 11.31 4.80 42.66 2.43
2253 8373 2.664081 GCCTAGGTGCAGGTGCTCT 61.664 63.158 11.31 3.89 42.66 4.09
2254 8374 2.124942 GCCTAGGTGCAGGTGCTC 60.125 66.667 11.31 0.00 42.66 4.26
2255 8375 3.721706 GGCCTAGGTGCAGGTGCT 61.722 66.667 11.31 0.00 42.66 4.40
2256 8376 2.771328 AAAGGCCTAGGTGCAGGTGC 62.771 60.000 5.16 0.00 38.05 5.01
2257 8377 0.251341 AAAAGGCCTAGGTGCAGGTG 60.251 55.000 5.16 0.00 38.05 4.00
2258 8378 0.482887 AAAAAGGCCTAGGTGCAGGT 59.517 50.000 5.16 0.00 38.05 4.00
2259 8379 2.507407 TAAAAAGGCCTAGGTGCAGG 57.493 50.000 5.16 0.00 38.86 4.85
2260 8380 3.891049 AGATAAAAAGGCCTAGGTGCAG 58.109 45.455 5.16 0.00 0.00 4.41
2261 8381 4.686122 GCTAGATAAAAAGGCCTAGGTGCA 60.686 45.833 5.16 0.00 31.69 4.57
2262 8382 3.815962 GCTAGATAAAAAGGCCTAGGTGC 59.184 47.826 5.16 0.00 31.69 5.01
2263 8383 4.141482 TGGCTAGATAAAAAGGCCTAGGTG 60.141 45.833 5.16 0.00 42.84 4.00
2264 8384 4.045022 TGGCTAGATAAAAAGGCCTAGGT 58.955 43.478 5.16 0.00 42.84 3.08
2265 8385 4.706842 TGGCTAGATAAAAAGGCCTAGG 57.293 45.455 5.16 3.67 42.84 3.02
2266 8386 8.870075 ATAAATGGCTAGATAAAAAGGCCTAG 57.130 34.615 5.16 0.00 42.84 3.02
2267 8387 9.654919 AAATAAATGGCTAGATAAAAAGGCCTA 57.345 29.630 5.16 0.00 42.84 3.93
2268 8388 8.553085 AAATAAATGGCTAGATAAAAAGGCCT 57.447 30.769 0.00 0.00 42.84 5.19
2269 8389 7.872993 GGAAATAAATGGCTAGATAAAAAGGCC 59.127 37.037 0.00 0.00 42.73 5.19
2270 8390 8.642432 AGGAAATAAATGGCTAGATAAAAAGGC 58.358 33.333 0.00 0.00 38.68 4.35
2271 8391 9.971922 CAGGAAATAAATGGCTAGATAAAAAGG 57.028 33.333 0.00 0.00 0.00 3.11
2272 8392 9.468532 GCAGGAAATAAATGGCTAGATAAAAAG 57.531 33.333 0.00 0.00 0.00 2.27
2273 8393 8.976353 TGCAGGAAATAAATGGCTAGATAAAAA 58.024 29.630 0.00 0.00 0.00 1.94
2274 8394 8.532186 TGCAGGAAATAAATGGCTAGATAAAA 57.468 30.769 0.00 0.00 0.00 1.52
2275 8395 8.710749 ATGCAGGAAATAAATGGCTAGATAAA 57.289 30.769 0.00 0.00 0.00 1.40
2276 8396 7.119699 CGATGCAGGAAATAAATGGCTAGATAA 59.880 37.037 0.00 0.00 0.00 1.75
2277 8397 6.595326 CGATGCAGGAAATAAATGGCTAGATA 59.405 38.462 0.00 0.00 0.00 1.98
2278 8398 5.413833 CGATGCAGGAAATAAATGGCTAGAT 59.586 40.000 0.00 0.00 0.00 1.98
2279 8399 4.756642 CGATGCAGGAAATAAATGGCTAGA 59.243 41.667 0.00 0.00 0.00 2.43
2280 8400 4.516698 ACGATGCAGGAAATAAATGGCTAG 59.483 41.667 0.00 0.00 0.00 3.42
2281 8401 4.275689 CACGATGCAGGAAATAAATGGCTA 59.724 41.667 0.00 0.00 0.00 3.93
2282 8402 3.067180 CACGATGCAGGAAATAAATGGCT 59.933 43.478 0.00 0.00 0.00 4.75
2283 8403 3.066621 TCACGATGCAGGAAATAAATGGC 59.933 43.478 0.00 0.00 0.00 4.40
2284 8404 4.898829 TCACGATGCAGGAAATAAATGG 57.101 40.909 0.00 0.00 0.00 3.16
2285 8405 5.622448 CGAATCACGATGCAGGAAATAAATG 59.378 40.000 0.00 0.00 45.77 2.32
2286 8406 5.296780 ACGAATCACGATGCAGGAAATAAAT 59.703 36.000 0.00 0.00 45.77 1.40
2287 8407 4.634004 ACGAATCACGATGCAGGAAATAAA 59.366 37.500 0.00 0.00 45.77 1.40
2288 8408 4.033932 CACGAATCACGATGCAGGAAATAA 59.966 41.667 0.00 0.00 45.77 1.40
2289 8409 3.555547 CACGAATCACGATGCAGGAAATA 59.444 43.478 0.00 0.00 45.77 1.40
2290 8410 2.352651 CACGAATCACGATGCAGGAAAT 59.647 45.455 0.00 0.00 45.77 2.17
2291 8411 1.731709 CACGAATCACGATGCAGGAAA 59.268 47.619 0.00 0.00 45.77 3.13
2292 8412 1.337728 ACACGAATCACGATGCAGGAA 60.338 47.619 0.00 0.00 45.77 3.36
2293 8413 0.246360 ACACGAATCACGATGCAGGA 59.754 50.000 0.00 0.00 45.77 3.86
2294 8414 1.921243 TACACGAATCACGATGCAGG 58.079 50.000 0.00 0.00 45.77 4.85
2295 8415 2.923655 ACTTACACGAATCACGATGCAG 59.076 45.455 0.00 0.00 45.77 4.41
2296 8416 2.954316 ACTTACACGAATCACGATGCA 58.046 42.857 0.00 0.00 45.77 3.96
2297 8417 3.991605 AACTTACACGAATCACGATGC 57.008 42.857 0.00 0.00 45.77 3.91
2298 8418 6.153212 AGAAAACTTACACGAATCACGATG 57.847 37.500 0.00 0.00 45.77 3.84
2299 8419 6.780706 AAGAAAACTTACACGAATCACGAT 57.219 33.333 0.00 0.00 45.77 3.73
2300 8420 6.592798 AAAGAAAACTTACACGAATCACGA 57.407 33.333 0.00 0.00 45.77 4.35
2326 8446 9.591792 CAAGACATGTTCTATATGAGAGAAACA 57.408 33.333 0.00 0.00 34.78 2.83
2327 8447 9.593134 ACAAGACATGTTCTATATGAGAGAAAC 57.407 33.333 0.00 0.00 40.06 2.78
2330 8450 9.634021 ACTACAAGACATGTTCTATATGAGAGA 57.366 33.333 0.00 0.00 43.63 3.10
2338 8458 9.950496 AGATTTGAACTACAAGACATGTTCTAT 57.050 29.630 0.00 0.00 43.63 1.98
2339 8459 9.778741 AAGATTTGAACTACAAGACATGTTCTA 57.221 29.630 0.00 0.00 43.63 2.10
2340 8460 8.682936 AAGATTTGAACTACAAGACATGTTCT 57.317 30.769 0.00 0.00 43.63 3.01
2341 8461 9.173939 CAAAGATTTGAACTACAAGACATGTTC 57.826 33.333 0.00 0.00 40.76 3.18
2342 8462 7.649306 GCAAAGATTTGAACTACAAGACATGTT 59.351 33.333 9.44 0.00 40.76 2.71
2343 8463 7.141363 GCAAAGATTTGAACTACAAGACATGT 58.859 34.615 9.44 0.00 42.12 3.21
2344 8464 7.140705 TGCAAAGATTTGAACTACAAGACATG 58.859 34.615 9.44 0.00 40.55 3.21
2345 8465 7.229306 TCTGCAAAGATTTGAACTACAAGACAT 59.771 33.333 9.44 0.00 40.55 3.06
2346 8466 6.542005 TCTGCAAAGATTTGAACTACAAGACA 59.458 34.615 9.44 0.00 40.55 3.41
2347 8467 6.959361 TCTGCAAAGATTTGAACTACAAGAC 58.041 36.000 9.44 0.00 40.55 3.01
2348 8468 7.066887 TGTTCTGCAAAGATTTGAACTACAAGA 59.933 33.333 9.44 0.00 40.55 3.02
2349 8469 7.195646 TGTTCTGCAAAGATTTGAACTACAAG 58.804 34.615 9.44 0.00 40.55 3.16
2350 8470 7.094508 TGTTCTGCAAAGATTTGAACTACAA 57.905 32.000 9.44 0.00 40.55 2.41
2351 8471 6.691754 TGTTCTGCAAAGATTTGAACTACA 57.308 33.333 9.44 4.99 40.55 2.74
2352 8472 6.972328 TGTTGTTCTGCAAAGATTTGAACTAC 59.028 34.615 15.34 15.34 40.55 2.73
2353 8473 7.094508 TGTTGTTCTGCAAAGATTTGAACTA 57.905 32.000 9.44 4.21 40.55 2.24
2354 8474 5.964758 TGTTGTTCTGCAAAGATTTGAACT 58.035 33.333 9.44 0.00 40.55 3.01
2355 8475 6.645700 TTGTTGTTCTGCAAAGATTTGAAC 57.354 33.333 9.44 5.94 40.55 3.18
2364 8484 7.870445 AGTTAGAAAACTTTGTTGTTCTGCAAA 59.130 29.630 13.05 0.00 43.60 3.68
2365 8485 7.375053 AGTTAGAAAACTTTGTTGTTCTGCAA 58.625 30.769 13.05 0.00 43.60 4.08
2366 8486 6.919721 AGTTAGAAAACTTTGTTGTTCTGCA 58.080 32.000 13.05 0.00 43.60 4.41
2367 8487 8.395633 TCTAGTTAGAAAACTTTGTTGTTCTGC 58.604 33.333 13.05 0.00 43.60 4.26
2484 8604 9.617523 AATCTTTCAGAAATTTTGGTTTGACAT 57.382 25.926 0.00 0.00 0.00 3.06
2485 8605 9.447157 AAATCTTTCAGAAATTTTGGTTTGACA 57.553 25.926 0.00 0.00 0.00 3.58
2513 8633 8.947115 GCAAAGCTTTTTAACTAGAATCTAGGA 58.053 33.333 20.18 6.20 0.00 2.94
2514 8634 8.184848 GGCAAAGCTTTTTAACTAGAATCTAGG 58.815 37.037 20.18 3.17 0.00 3.02
2515 8635 7.905493 CGGCAAAGCTTTTTAACTAGAATCTAG 59.095 37.037 15.25 15.25 0.00 2.43
2516 8636 7.625606 GCGGCAAAGCTTTTTAACTAGAATCTA 60.626 37.037 9.53 0.00 0.00 1.98
2517 8637 6.612306 CGGCAAAGCTTTTTAACTAGAATCT 58.388 36.000 9.53 0.00 0.00 2.40
2518 8638 5.286320 GCGGCAAAGCTTTTTAACTAGAATC 59.714 40.000 9.53 0.00 0.00 2.52
2519 8639 5.161358 GCGGCAAAGCTTTTTAACTAGAAT 58.839 37.500 9.53 0.00 0.00 2.40
2520 8640 4.542735 GCGGCAAAGCTTTTTAACTAGAA 58.457 39.130 9.53 0.00 0.00 2.10
2521 8641 3.364565 CGCGGCAAAGCTTTTTAACTAGA 60.365 43.478 9.53 0.00 34.40 2.43
2522 8642 2.908626 CGCGGCAAAGCTTTTTAACTAG 59.091 45.455 9.53 0.00 34.40 2.57
2523 8643 2.350964 CCGCGGCAAAGCTTTTTAACTA 60.351 45.455 14.67 0.00 34.40 2.24
2524 8644 1.601914 CCGCGGCAAAGCTTTTTAACT 60.602 47.619 14.67 0.00 34.40 2.24
2525 8645 0.781787 CCGCGGCAAAGCTTTTTAAC 59.218 50.000 14.67 0.00 34.40 2.01
2526 8646 0.386113 ACCGCGGCAAAGCTTTTTAA 59.614 45.000 28.58 0.00 34.40 1.52
2527 8647 0.318275 CACCGCGGCAAAGCTTTTTA 60.318 50.000 28.58 0.00 34.40 1.52
2528 8648 1.591327 CACCGCGGCAAAGCTTTTT 60.591 52.632 28.58 0.00 34.40 1.94
2529 8649 2.027460 CACCGCGGCAAAGCTTTT 59.973 55.556 28.58 0.00 34.40 2.27
2530 8650 4.645921 GCACCGCGGCAAAGCTTT 62.646 61.111 28.58 5.69 34.40 3.51
2538 8658 4.279043 AAACCTTTGCACCGCGGC 62.279 61.111 28.58 13.51 0.00 6.53
2539 8659 2.343163 TTCAAACCTTTGCACCGCGG 62.343 55.000 26.86 26.86 38.05 6.46
2540 8660 1.064946 TTCAAACCTTTGCACCGCG 59.935 52.632 0.00 0.00 38.05 6.46
2541 8661 0.102300 AGTTCAAACCTTTGCACCGC 59.898 50.000 0.00 0.00 35.38 5.68
2542 8662 2.159310 TGAAGTTCAAACCTTTGCACCG 60.159 45.455 2.20 0.00 35.38 4.94
2543 8663 3.518634 TGAAGTTCAAACCTTTGCACC 57.481 42.857 2.20 0.00 35.38 5.01
2544 8664 5.178438 TGTTTTGAAGTTCAAACCTTTGCAC 59.822 36.000 26.72 20.35 45.03 4.57
2545 8665 5.300752 TGTTTTGAAGTTCAAACCTTTGCA 58.699 33.333 26.72 16.35 45.03 4.08
2546 8666 5.854431 TGTTTTGAAGTTCAAACCTTTGC 57.146 34.783 26.72 14.50 45.03 3.68
2547 8667 7.363205 ACATGTTTTGAAGTTCAAACCTTTG 57.637 32.000 26.72 21.90 45.03 2.77
2548 8668 7.877612 AGAACATGTTTTGAAGTTCAAACCTTT 59.122 29.630 26.72 15.73 45.03 3.11
2549 8669 7.386059 AGAACATGTTTTGAAGTTCAAACCTT 58.614 30.769 26.72 16.98 45.03 3.50
2550 8670 6.935167 AGAACATGTTTTGAAGTTCAAACCT 58.065 32.000 26.72 13.65 45.03 3.50
2551 8671 8.871686 ATAGAACATGTTTTGAAGTTCAAACC 57.128 30.769 26.72 21.53 45.03 3.27
2600 8720 8.495949 CGACACAACTAACTTTCTACATGAAAT 58.504 33.333 0.00 0.00 42.96 2.17
2601 8721 7.517734 GCGACACAACTAACTTTCTACATGAAA 60.518 37.037 0.00 0.00 41.85 2.69
2602 8722 6.073980 GCGACACAACTAACTTTCTACATGAA 60.074 38.462 0.00 0.00 0.00 2.57
2603 8723 5.404366 GCGACACAACTAACTTTCTACATGA 59.596 40.000 0.00 0.00 0.00 3.07
2604 8724 5.176774 TGCGACACAACTAACTTTCTACATG 59.823 40.000 0.00 0.00 0.00 3.21
2605 8725 5.176958 GTGCGACACAACTAACTTTCTACAT 59.823 40.000 5.30 0.00 34.08 2.29
2606 8726 4.505191 GTGCGACACAACTAACTTTCTACA 59.495 41.667 5.30 0.00 34.08 2.74
2607 8727 4.505191 TGTGCGACACAACTAACTTTCTAC 59.495 41.667 9.71 0.00 41.69 2.59
2608 8728 4.684877 TGTGCGACACAACTAACTTTCTA 58.315 39.130 9.71 0.00 41.69 2.10
2609 8729 3.527533 TGTGCGACACAACTAACTTTCT 58.472 40.909 9.71 0.00 41.69 2.52
2610 8730 3.936902 TGTGCGACACAACTAACTTTC 57.063 42.857 9.71 0.00 41.69 2.62
2621 8741 3.550275 TCGCTTTAAGATATGTGCGACAC 59.450 43.478 3.75 3.44 45.74 3.67
2622 8742 3.776340 TCGCTTTAAGATATGTGCGACA 58.224 40.909 3.75 0.00 45.74 4.35
2625 8745 4.715520 ATGTCGCTTTAAGATATGTGCG 57.284 40.909 0.00 0.00 43.95 5.34
2626 8746 6.048073 TCAATGTCGCTTTAAGATATGTGC 57.952 37.500 0.00 0.00 0.00 4.57
2627 8747 7.909267 TCTTCAATGTCGCTTTAAGATATGTG 58.091 34.615 0.00 0.00 0.00 3.21
2628 8748 7.766278 ACTCTTCAATGTCGCTTTAAGATATGT 59.234 33.333 0.00 0.00 0.00 2.29
2629 8749 8.136057 ACTCTTCAATGTCGCTTTAAGATATG 57.864 34.615 0.00 0.00 0.00 1.78
2630 8750 7.981789 TGACTCTTCAATGTCGCTTTAAGATAT 59.018 33.333 0.00 0.00 36.10 1.63
2631 8751 7.320399 TGACTCTTCAATGTCGCTTTAAGATA 58.680 34.615 0.00 0.00 36.10 1.98
2632 8752 6.166279 TGACTCTTCAATGTCGCTTTAAGAT 58.834 36.000 0.00 0.00 36.10 2.40
2633 8753 5.538118 TGACTCTTCAATGTCGCTTTAAGA 58.462 37.500 0.00 0.00 36.10 2.10
2634 8754 5.635280 TCTGACTCTTCAATGTCGCTTTAAG 59.365 40.000 0.00 0.00 36.10 1.85
2635 8755 5.538118 TCTGACTCTTCAATGTCGCTTTAA 58.462 37.500 0.00 0.00 36.10 1.52
2636 8756 5.134202 TCTGACTCTTCAATGTCGCTTTA 57.866 39.130 0.00 0.00 36.10 1.85
2637 8757 3.995199 TCTGACTCTTCAATGTCGCTTT 58.005 40.909 0.00 0.00 36.10 3.51
2638 8758 3.667497 TCTGACTCTTCAATGTCGCTT 57.333 42.857 0.00 0.00 36.10 4.68
2639 8759 3.667497 TTCTGACTCTTCAATGTCGCT 57.333 42.857 0.00 0.00 36.10 4.93
2640 8760 4.026145 GCTATTCTGACTCTTCAATGTCGC 60.026 45.833 0.00 0.00 36.10 5.19
2641 8761 5.105063 TGCTATTCTGACTCTTCAATGTCG 58.895 41.667 0.00 0.00 36.10 4.35
2642 8762 5.523188 CCTGCTATTCTGACTCTTCAATGTC 59.477 44.000 0.00 0.00 0.00 3.06
2643 8763 5.426504 CCTGCTATTCTGACTCTTCAATGT 58.573 41.667 0.00 0.00 0.00 2.71
2644 8764 4.815308 CCCTGCTATTCTGACTCTTCAATG 59.185 45.833 0.00 0.00 0.00 2.82
2645 8765 4.685575 GCCCTGCTATTCTGACTCTTCAAT 60.686 45.833 0.00 0.00 0.00 2.57
2646 8766 3.369892 GCCCTGCTATTCTGACTCTTCAA 60.370 47.826 0.00 0.00 0.00 2.69
2647 8767 2.169352 GCCCTGCTATTCTGACTCTTCA 59.831 50.000 0.00 0.00 0.00 3.02
2648 8768 2.484594 GGCCCTGCTATTCTGACTCTTC 60.485 54.545 0.00 0.00 0.00 2.87
2649 8769 1.488393 GGCCCTGCTATTCTGACTCTT 59.512 52.381 0.00 0.00 0.00 2.85
2650 8770 1.127343 GGCCCTGCTATTCTGACTCT 58.873 55.000 0.00 0.00 0.00 3.24
2651 8771 0.249657 CGGCCCTGCTATTCTGACTC 60.250 60.000 0.00 0.00 0.00 3.36
2652 8772 1.690219 CCGGCCCTGCTATTCTGACT 61.690 60.000 0.00 0.00 0.00 3.41
2653 8773 1.227674 CCGGCCCTGCTATTCTGAC 60.228 63.158 0.00 0.00 0.00 3.51
2654 8774 2.443394 CCCGGCCCTGCTATTCTGA 61.443 63.158 0.00 0.00 0.00 3.27
2655 8775 2.111878 CCCGGCCCTGCTATTCTG 59.888 66.667 0.00 0.00 0.00 3.02
2656 8776 3.171388 CCCCGGCCCTGCTATTCT 61.171 66.667 0.00 0.00 0.00 2.40
2657 8777 3.489513 ACCCCGGCCCTGCTATTC 61.490 66.667 0.00 0.00 0.00 1.75
2658 8778 3.809013 CACCCCGGCCCTGCTATT 61.809 66.667 0.00 0.00 0.00 1.73
2659 8779 3.707025 TACACCCCGGCCCTGCTAT 62.707 63.158 0.00 0.00 0.00 2.97
2660 8780 4.401876 TACACCCCGGCCCTGCTA 62.402 66.667 0.00 0.00 0.00 3.49
2667 8787 4.468689 GAGCACCTACACCCCGGC 62.469 72.222 0.00 0.00 0.00 6.13
2668 8788 2.119484 TTTGAGCACCTACACCCCGG 62.119 60.000 0.00 0.00 0.00 5.73
2669 8789 0.250553 TTTTGAGCACCTACACCCCG 60.251 55.000 0.00 0.00 0.00 5.73
2670 8790 1.989706 TTTTTGAGCACCTACACCCC 58.010 50.000 0.00 0.00 0.00 4.95
2693 8813 8.531146 CCATGGATATATGTACATACAGACACA 58.469 37.037 17.69 12.08 39.92 3.72
2694 8814 8.531982 ACCATGGATATATGTACATACAGACAC 58.468 37.037 21.47 7.30 39.92 3.67
2695 8815 8.664669 ACCATGGATATATGTACATACAGACA 57.335 34.615 21.47 14.25 39.92 3.41
2696 8816 9.371136 CAACCATGGATATATGTACATACAGAC 57.629 37.037 21.47 9.52 39.92 3.51
2697 8817 9.100197 ACAACCATGGATATATGTACATACAGA 57.900 33.333 21.47 7.02 39.92 3.41
2698 8818 9.371136 GACAACCATGGATATATGTACATACAG 57.629 37.037 21.47 3.90 39.92 2.74
2699 8819 8.032451 CGACAACCATGGATATATGTACATACA 58.968 37.037 21.47 7.05 40.98 2.29
2711 9465 0.180171 CCAGCCGACAACCATGGATA 59.820 55.000 21.47 0.00 32.55 2.59
2713 9467 2.350895 CCAGCCGACAACCATGGA 59.649 61.111 21.47 0.00 32.55 3.41
2725 9479 2.676471 AAACGGTGATGGCCAGCC 60.676 61.111 20.33 15.64 40.02 4.85
2728 9482 3.361158 CGCAAACGGTGATGGCCA 61.361 61.111 8.56 8.56 34.97 5.36
2776 9530 3.037549 CTCTTCCTTCTCCTAGTGGCAT 58.962 50.000 0.00 0.00 0.00 4.40
2780 9534 4.243793 TCTCCTCTTCCTTCTCCTAGTG 57.756 50.000 0.00 0.00 0.00 2.74
2819 9573 2.485302 GGCCATGGTTTGAGCACTTTTT 60.485 45.455 14.67 0.00 0.00 1.94
2820 9574 1.070601 GGCCATGGTTTGAGCACTTTT 59.929 47.619 14.67 0.00 0.00 2.27
2822 9576 1.187567 GGGCCATGGTTTGAGCACTT 61.188 55.000 14.67 0.00 0.00 3.16
2823 9577 1.607467 GGGCCATGGTTTGAGCACT 60.607 57.895 14.67 0.00 0.00 4.40
2824 9578 1.259840 ATGGGCCATGGTTTGAGCAC 61.260 55.000 20.49 0.00 0.00 4.40
2825 9579 1.078891 ATGGGCCATGGTTTGAGCA 59.921 52.632 20.49 0.00 0.00 4.26
2826 9580 1.518774 CATGGGCCATGGTTTGAGC 59.481 57.895 34.26 0.00 38.11 4.26
2841 9595 0.740516 GGCAAAATTCGCCCACCATG 60.741 55.000 7.48 0.00 44.22 3.66
2842 9596 1.596408 GGCAAAATTCGCCCACCAT 59.404 52.632 7.48 0.00 44.22 3.55
2848 9602 5.822271 CGAGAACGTAGGCAAAATTCGCC 62.822 52.174 10.22 10.22 41.23 5.54
2851 9605 3.678548 AGTCGAGAACGTAGGCAAAATTC 59.321 43.478 0.00 0.00 40.69 2.17
2853 9607 3.251571 GAGTCGAGAACGTAGGCAAAAT 58.748 45.455 0.00 0.00 40.69 1.82
2854 9608 2.608752 GGAGTCGAGAACGTAGGCAAAA 60.609 50.000 0.00 0.00 40.69 2.44
2856 9610 0.524862 GGAGTCGAGAACGTAGGCAA 59.475 55.000 0.00 0.00 40.69 4.52
2857 9611 0.322277 AGGAGTCGAGAACGTAGGCA 60.322 55.000 0.00 0.00 40.69 4.75
2858 9612 0.810016 AAGGAGTCGAGAACGTAGGC 59.190 55.000 0.00 0.00 40.69 3.93
2859 9613 2.082231 TGAAGGAGTCGAGAACGTAGG 58.918 52.381 0.00 0.00 40.69 3.18
2860 9614 4.099120 CAATGAAGGAGTCGAGAACGTAG 58.901 47.826 0.00 0.00 40.69 3.51
2861 9615 3.672511 GCAATGAAGGAGTCGAGAACGTA 60.673 47.826 0.00 0.00 40.69 3.57
2862 9616 2.927014 GCAATGAAGGAGTCGAGAACGT 60.927 50.000 0.00 0.00 40.69 3.99
2863 9617 1.656095 GCAATGAAGGAGTCGAGAACG 59.344 52.381 0.00 0.00 41.26 3.95
2864 9618 2.413453 GTGCAATGAAGGAGTCGAGAAC 59.587 50.000 0.00 0.00 0.00 3.01
2865 9619 2.688507 GTGCAATGAAGGAGTCGAGAA 58.311 47.619 0.00 0.00 0.00 2.87
2866 9620 1.402852 CGTGCAATGAAGGAGTCGAGA 60.403 52.381 0.00 0.00 0.00 4.04
2868 9622 0.317160 ACGTGCAATGAAGGAGTCGA 59.683 50.000 0.00 0.00 0.00 4.20
2869 9623 0.439985 CACGTGCAATGAAGGAGTCG 59.560 55.000 0.82 0.00 0.00 4.18
2870 9624 1.512926 ACACGTGCAATGAAGGAGTC 58.487 50.000 17.22 0.00 0.00 3.36
2873 9627 1.424403 CGTACACGTGCAATGAAGGA 58.576 50.000 17.22 0.00 34.11 3.36
2874 9628 3.947279 CGTACACGTGCAATGAAGG 57.053 52.632 17.22 0.00 34.11 3.46
2887 9641 3.558505 GTCTTAACGAGCAAGACGTACA 58.441 45.455 10.95 0.00 41.67 2.90
2895 9649 4.521130 ATGACAGAGTCTTAACGAGCAA 57.479 40.909 0.00 0.00 33.15 3.91
2896 9650 5.836821 ATATGACAGAGTCTTAACGAGCA 57.163 39.130 0.00 0.00 33.15 4.26
2903 9657 9.653287 CCACAAAAGTAATATGACAGAGTCTTA 57.347 33.333 0.00 0.00 33.15 2.10
2904 9658 8.375506 TCCACAAAAGTAATATGACAGAGTCTT 58.624 33.333 0.00 0.00 33.15 3.01
2905 9659 7.907389 TCCACAAAAGTAATATGACAGAGTCT 58.093 34.615 0.00 0.00 33.15 3.24
2907 9661 8.543774 AGATCCACAAAAGTAATATGACAGAGT 58.456 33.333 0.00 0.00 0.00 3.24
2909 9663 9.166173 CAAGATCCACAAAAGTAATATGACAGA 57.834 33.333 0.00 0.00 0.00 3.41
2910 9664 9.166173 TCAAGATCCACAAAAGTAATATGACAG 57.834 33.333 0.00 0.00 0.00 3.51
2911 9665 9.166173 CTCAAGATCCACAAAAGTAATATGACA 57.834 33.333 0.00 0.00 0.00 3.58
2913 9667 9.383519 GACTCAAGATCCACAAAAGTAATATGA 57.616 33.333 0.00 0.00 0.00 2.15
2916 9670 7.685481 TGGACTCAAGATCCACAAAAGTAATA 58.315 34.615 0.00 0.00 41.47 0.98
2917 9671 6.542821 TGGACTCAAGATCCACAAAAGTAAT 58.457 36.000 0.00 0.00 41.47 1.89
2918 9672 5.935945 TGGACTCAAGATCCACAAAAGTAA 58.064 37.500 0.00 0.00 41.47 2.24
2919 9673 5.560722 TGGACTCAAGATCCACAAAAGTA 57.439 39.130 0.00 0.00 41.47 2.24
2936 9889 3.108847 AGCTAGCTAAGGTCTTGGACT 57.891 47.619 17.69 0.00 32.47 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.