Multiple sequence alignment - TraesCS7A01G485400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G485400 chr7A 100.000 2667 0 0 1 2667 676276892 676279558 0.000000e+00 4926.0
1 TraesCS7A01G485400 chr7A 87.745 1836 128 45 736 2498 676066697 676064886 0.000000e+00 2054.0
2 TraesCS7A01G485400 chr7A 88.417 259 30 0 226 484 676069145 676068887 1.990000e-81 313.0
3 TraesCS7A01G485400 chr7A 93.706 143 8 1 598 739 676067111 676066969 2.080000e-51 213.0
4 TraesCS7A01G485400 chr7A 91.803 122 9 1 477 598 676068621 676068501 4.570000e-38 169.0
5 TraesCS7A01G485400 chr7D 85.457 1774 155 44 812 2502 585604264 585602511 0.000000e+00 1751.0
6 TraesCS7A01G485400 chr7B 83.095 1118 119 31 917 1984 654996029 654994932 0.000000e+00 953.0
7 TraesCS7A01G485400 chr7B 90.816 196 14 1 1984 2175 654983032 654982837 2.630000e-65 259.0
8 TraesCS7A01G485400 chr7B 83.858 254 25 11 2199 2445 654982844 654982600 7.430000e-56 228.0
9 TraesCS7A01G485400 chr7B 91.613 155 13 0 2348 2502 655108850 655109004 5.780000e-52 215.0
10 TraesCS7A01G485400 chr2A 86.857 350 41 4 175 524 11318314 11317970 1.160000e-103 387.0
11 TraesCS7A01G485400 chr2A 93.960 149 9 0 2519 2667 628521999 628522147 2.670000e-55 226.0
12 TraesCS7A01G485400 chr2A 82.482 137 15 8 1590 1721 25450098 25449966 7.800000e-21 111.0
13 TraesCS7A01G485400 chr3D 95.946 148 6 0 2520 2667 65433047 65433194 9.540000e-60 241.0
14 TraesCS7A01G485400 chr5D 94.702 151 6 1 2519 2667 80215270 80215120 1.600000e-57 233.0
15 TraesCS7A01G485400 chr4A 94.631 149 8 0 2519 2667 38717426 38717278 5.740000e-57 231.0
16 TraesCS7A01G485400 chr1D 94.000 150 9 0 2518 2667 6254382 6254531 7.430000e-56 228.0
17 TraesCS7A01G485400 chr2D 92.617 149 5 3 2519 2667 25806213 25806071 2.690000e-50 209.0
18 TraesCS7A01G485400 chr2D 90.196 153 15 0 2515 2667 602378838 602378990 1.620000e-47 200.0
19 TraesCS7A01G485400 chr3A 89.933 149 14 1 2519 2667 730152813 730152960 9.740000e-45 191.0
20 TraesCS7A01G485400 chr4B 88.742 151 17 0 2517 2667 116740605 116740455 4.530000e-43 185.0
21 TraesCS7A01G485400 chr2B 77.778 153 19 6 757 905 36900998 36900857 2.200000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G485400 chr7A 676276892 676279558 2666 False 4926.00 4926 100.00000 1 2667 1 chr7A.!!$F1 2666
1 TraesCS7A01G485400 chr7A 676064886 676069145 4259 True 687.25 2054 90.41775 226 2498 4 chr7A.!!$R1 2272
2 TraesCS7A01G485400 chr7D 585602511 585604264 1753 True 1751.00 1751 85.45700 812 2502 1 chr7D.!!$R1 1690
3 TraesCS7A01G485400 chr7B 654994932 654996029 1097 True 953.00 953 83.09500 917 1984 1 chr7B.!!$R1 1067

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 189 0.110104 GATGCATTGAGGCCCTAGCT 59.890 55.0 0.0 0.0 39.73 3.32 F
1446 3388 0.392998 AACTCATGTCGGCACCCATC 60.393 55.0 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1642 3622 0.470341 GAGCAGCTTTAGGGGTAGGG 59.530 60.0 0.00 0.0 0.0 3.53 R
2542 4597 0.107459 TGCATGCATTGTAGCCCGTA 60.107 50.0 18.46 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.610075 ACCATGAACTTTCATTAAAGGCAT 57.390 33.333 1.52 4.73 45.13 4.40
24 25 6.400568 ACCATGAACTTTCATTAAAGGCATG 58.599 36.000 19.85 19.85 45.13 4.06
25 26 5.292589 CCATGAACTTTCATTAAAGGCATGC 59.707 40.000 20.66 9.90 45.13 4.06
26 27 5.465532 TGAACTTTCATTAAAGGCATGCA 57.534 34.783 21.36 0.00 45.39 3.96
27 28 6.040209 TGAACTTTCATTAAAGGCATGCAT 57.960 33.333 21.36 10.32 45.39 3.96
28 29 7.167924 TGAACTTTCATTAAAGGCATGCATA 57.832 32.000 21.36 6.51 45.39 3.14
29 30 7.035004 TGAACTTTCATTAAAGGCATGCATAC 58.965 34.615 21.36 1.57 45.39 2.39
30 31 6.780457 ACTTTCATTAAAGGCATGCATACT 57.220 33.333 21.36 4.35 45.39 2.12
31 32 7.174107 ACTTTCATTAAAGGCATGCATACTT 57.826 32.000 21.36 10.95 45.39 2.24
32 33 7.614494 ACTTTCATTAAAGGCATGCATACTTT 58.386 30.769 23.70 23.70 45.39 2.66
33 34 8.096414 ACTTTCATTAAAGGCATGCATACTTTT 58.904 29.630 24.76 18.81 45.39 2.27
34 35 8.845413 TTTCATTAAAGGCATGCATACTTTTT 57.155 26.923 24.76 15.33 36.07 1.94
35 36 9.935241 TTTCATTAAAGGCATGCATACTTTTTA 57.065 25.926 24.76 12.83 36.07 1.52
68 69 8.686397 AGAAACATTTTTCCAAAATTTGCAAC 57.314 26.923 0.00 0.00 42.00 4.17
69 70 7.758980 AGAAACATTTTTCCAAAATTTGCAACC 59.241 29.630 0.00 0.00 42.00 3.77
70 71 6.521151 ACATTTTTCCAAAATTTGCAACCA 57.479 29.167 0.00 0.00 0.00 3.67
71 72 7.110043 ACATTTTTCCAAAATTTGCAACCAT 57.890 28.000 0.00 0.00 0.00 3.55
72 73 8.230472 ACATTTTTCCAAAATTTGCAACCATA 57.770 26.923 0.00 0.00 0.00 2.74
73 74 8.858094 ACATTTTTCCAAAATTTGCAACCATAT 58.142 25.926 0.00 0.00 0.00 1.78
74 75 9.694137 CATTTTTCCAAAATTTGCAACCATATT 57.306 25.926 0.00 0.00 0.00 1.28
75 76 9.911138 ATTTTTCCAAAATTTGCAACCATATTC 57.089 25.926 0.00 0.00 0.00 1.75
76 77 8.688747 TTTTCCAAAATTTGCAACCATATTCT 57.311 26.923 0.00 0.00 0.00 2.40
77 78 9.784531 TTTTCCAAAATTTGCAACCATATTCTA 57.215 25.926 0.00 0.00 0.00 2.10
78 79 9.784531 TTTCCAAAATTTGCAACCATATTCTAA 57.215 25.926 0.00 0.00 0.00 2.10
79 80 9.784531 TTCCAAAATTTGCAACCATATTCTAAA 57.215 25.926 0.00 0.00 0.00 1.85
80 81 9.784531 TCCAAAATTTGCAACCATATTCTAAAA 57.215 25.926 0.00 0.00 0.00 1.52
108 109 9.903682 ATGTGAGCACTTAATAAAATATCATGC 57.096 29.630 1.99 0.00 0.00 4.06
109 110 8.069574 TGTGAGCACTTAATAAAATATCATGCG 58.930 33.333 1.99 0.00 35.72 4.73
110 111 7.059945 GTGAGCACTTAATAAAATATCATGCGC 59.940 37.037 0.00 0.00 35.72 6.09
111 112 6.969366 AGCACTTAATAAAATATCATGCGCA 58.031 32.000 14.96 14.96 35.72 6.09
112 113 7.596494 AGCACTTAATAAAATATCATGCGCAT 58.404 30.769 19.28 19.28 35.72 4.73
113 114 8.729756 AGCACTTAATAAAATATCATGCGCATA 58.270 29.630 24.84 8.42 35.72 3.14
114 115 9.507280 GCACTTAATAAAATATCATGCGCATAT 57.493 29.630 24.84 18.09 0.00 1.78
124 125 9.478768 AAATATCATGCGCATATTTCAAAATGA 57.521 25.926 24.84 14.07 33.07 2.57
125 126 9.647797 AATATCATGCGCATATTTCAAAATGAT 57.352 25.926 24.84 20.00 37.33 2.45
126 127 7.956420 ATCATGCGCATATTTCAAAATGATT 57.044 28.000 24.84 1.53 31.24 2.57
128 129 9.647797 ATCATGCGCATATTTCAAAATGATTAT 57.352 25.926 24.84 0.00 31.24 1.28
129 130 9.478768 TCATGCGCATATTTCAAAATGATTATT 57.521 25.926 24.84 0.00 0.00 1.40
169 170 9.599322 CTAAAATATTCTAAAATAGCAGCACCG 57.401 33.333 0.00 0.00 31.02 4.94
170 171 7.801716 AAATATTCTAAAATAGCAGCACCGA 57.198 32.000 0.00 0.00 31.02 4.69
171 172 7.986085 AATATTCTAAAATAGCAGCACCGAT 57.014 32.000 0.00 0.00 31.02 4.18
172 173 5.679734 ATTCTAAAATAGCAGCACCGATG 57.320 39.130 0.00 0.00 0.00 3.84
173 174 6.128172 ATATTCTAAAATAGCAGCACCGATGC 60.128 38.462 0.00 0.00 45.98 3.91
182 183 3.113745 CACCGATGCATTGAGGCC 58.886 61.111 15.98 0.00 0.00 5.19
183 184 2.124151 ACCGATGCATTGAGGCCC 60.124 61.111 15.98 0.00 0.00 5.80
184 185 2.194056 CCGATGCATTGAGGCCCT 59.806 61.111 15.98 0.00 0.00 5.19
185 186 1.344953 ACCGATGCATTGAGGCCCTA 61.345 55.000 15.98 0.00 0.00 3.53
186 187 0.604780 CCGATGCATTGAGGCCCTAG 60.605 60.000 15.98 0.00 0.00 3.02
187 188 1.233285 CGATGCATTGAGGCCCTAGC 61.233 60.000 8.37 0.00 38.76 3.42
188 189 0.110104 GATGCATTGAGGCCCTAGCT 59.890 55.000 0.00 0.00 39.73 3.32
189 190 0.554792 ATGCATTGAGGCCCTAGCTT 59.445 50.000 0.00 0.00 39.73 3.74
190 191 0.394762 TGCATTGAGGCCCTAGCTTG 60.395 55.000 0.00 0.00 39.73 4.01
191 192 1.732417 GCATTGAGGCCCTAGCTTGC 61.732 60.000 0.00 0.00 39.73 4.01
197 198 2.191641 GCCCTAGCTTGCCAGGAG 59.808 66.667 8.61 0.83 33.42 3.69
198 199 2.914289 CCCTAGCTTGCCAGGAGG 59.086 66.667 8.61 0.00 33.42 4.30
199 200 2.750657 CCCTAGCTTGCCAGGAGGG 61.751 68.421 8.61 1.28 41.02 4.30
210 211 3.665971 AGGAGGGCCTGGCTTTGG 61.666 66.667 12.95 0.00 44.90 3.28
219 220 4.500265 TGGCTTTGGCAGAAGACC 57.500 55.556 11.17 11.52 40.87 3.85
220 221 1.846261 TGGCTTTGGCAGAAGACCT 59.154 52.632 11.17 0.00 40.87 3.85
221 222 1.064003 TGGCTTTGGCAGAAGACCTA 58.936 50.000 11.17 0.00 40.87 3.08
222 223 1.271379 TGGCTTTGGCAGAAGACCTAC 60.271 52.381 11.17 0.00 40.87 3.18
223 224 1.271379 GGCTTTGGCAGAAGACCTACA 60.271 52.381 11.81 0.00 40.87 2.74
224 225 2.504367 GCTTTGGCAGAAGACCTACAA 58.496 47.619 11.81 0.00 38.54 2.41
233 234 5.185442 GGCAGAAGACCTACAACTTAGTAGT 59.815 44.000 0.00 0.00 39.84 2.73
235 236 6.294620 GCAGAAGACCTACAACTTAGTAGTGT 60.295 42.308 0.00 0.00 39.84 3.55
247 248 7.495934 ACAACTTAGTAGTGTGGATATTGCATC 59.504 37.037 0.00 0.00 34.01 3.91
249 250 3.995199 AGTAGTGTGGATATTGCATCCG 58.005 45.455 0.51 0.00 41.03 4.18
251 252 3.777106 AGTGTGGATATTGCATCCGAT 57.223 42.857 0.51 0.00 41.03 4.18
253 254 4.825422 AGTGTGGATATTGCATCCGATAG 58.175 43.478 0.51 0.00 41.03 2.08
258 259 4.162888 TGGATATTGCATCCGATAGCTCAT 59.837 41.667 0.00 0.00 41.03 2.90
260 261 5.007430 GGATATTGCATCCGATAGCTCATTG 59.993 44.000 0.00 0.00 0.00 2.82
263 264 2.632512 TGCATCCGATAGCTCATTGGTA 59.367 45.455 0.00 0.00 39.10 3.25
267 268 2.035961 TCCGATAGCTCATTGGTAGTGC 59.964 50.000 0.00 0.00 39.10 4.40
282 283 5.754782 TGGTAGTGCAAGATATCAACCAAT 58.245 37.500 5.32 0.61 33.03 3.16
295 296 1.753073 CAACCAATGATCCCAAGGAGC 59.247 52.381 0.00 0.00 38.78 4.70
315 316 4.147321 AGCCTATGGTGCAATTATCAAGG 58.853 43.478 0.00 0.00 0.00 3.61
317 318 4.217118 GCCTATGGTGCAATTATCAAGGAG 59.783 45.833 0.00 0.00 0.00 3.69
323 324 4.576463 GGTGCAATTATCAAGGAGATCGTT 59.424 41.667 0.00 0.00 38.19 3.85
328 329 6.846283 GCAATTATCAAGGAGATCGTTAAACG 59.154 38.462 0.00 0.00 44.19 3.60
371 372 6.330004 TGCTTTTTCATGCATGAACTTAGA 57.670 33.333 35.75 21.42 45.63 2.10
409 410 2.373540 TATAGCCTTGCGAAACACGT 57.626 45.000 0.00 0.00 44.60 4.49
411 412 1.225376 TAGCCTTGCGAAACACGTGG 61.225 55.000 21.57 2.48 44.60 4.94
457 458 3.114606 TCTGGCTTGGTCATCCTTATGA 58.885 45.455 0.00 0.00 39.87 2.15
479 480 8.732746 ATGACCATATTTCTGTACCTGTAAAC 57.267 34.615 0.00 0.00 0.00 2.01
508 782 5.927030 TGAGCAATAAAGTTTCGTGTGATC 58.073 37.500 0.00 0.00 0.00 2.92
518 792 1.428448 TCGTGTGATCGCCTCAAAAG 58.572 50.000 3.31 0.00 35.07 2.27
533 807 1.592543 CAAAAGAAAAAGCACCCACGC 59.407 47.619 0.00 0.00 0.00 5.34
541 815 3.047877 GCACCCACGCTGGTACAC 61.048 66.667 0.00 0.00 36.67 2.90
543 817 3.998672 ACCCACGCTGGTACACCG 61.999 66.667 0.00 0.00 43.85 4.94
550 824 2.317609 GCTGGTACACCGTGTGCTG 61.318 63.158 17.77 12.43 36.98 4.41
558 832 2.186826 ACCGTGTGCTGTTTGAGGC 61.187 57.895 0.00 0.00 0.00 4.70
564 838 0.882927 GTGCTGTTTGAGGCGTGGTA 60.883 55.000 0.00 0.00 0.00 3.25
575 849 2.774439 GGCGTGGTAAATTGCCTATG 57.226 50.000 1.13 0.00 44.16 2.23
613 2277 5.466819 GTGTAAATTTCCCCTAAAGCACAC 58.533 41.667 0.00 0.00 33.52 3.82
620 2284 1.356527 CCCTAAAGCACACGCCGTAC 61.357 60.000 0.00 0.00 39.83 3.67
647 2311 0.609131 ACACTCCATTTCCCTTGCGG 60.609 55.000 0.00 0.00 0.00 5.69
651 2315 2.241176 ACTCCATTTCCCTTGCGGATAA 59.759 45.455 0.00 0.00 41.63 1.75
659 2323 3.050089 TCCCTTGCGGATAAATCCCTTA 58.950 45.455 3.39 0.00 44.24 2.69
677 2341 5.057149 CCCTTATCAAATACCAAGTCTCCG 58.943 45.833 0.00 0.00 0.00 4.63
679 2343 3.627395 ATCAAATACCAAGTCTCCGCA 57.373 42.857 0.00 0.00 0.00 5.69
680 2344 2.972625 TCAAATACCAAGTCTCCGCAG 58.027 47.619 0.00 0.00 0.00 5.18
755 2695 4.401525 ACTAACGAACTGACTACACTCG 57.598 45.455 0.00 0.00 34.48 4.18
774 2714 2.055838 CGCGCACTAACTAAACTGACA 58.944 47.619 8.75 0.00 0.00 3.58
775 2715 2.666508 CGCGCACTAACTAAACTGACAT 59.333 45.455 8.75 0.00 0.00 3.06
776 2716 3.855379 CGCGCACTAACTAAACTGACATA 59.145 43.478 8.75 0.00 0.00 2.29
777 2717 4.325204 CGCGCACTAACTAAACTGACATAA 59.675 41.667 8.75 0.00 0.00 1.90
778 2718 5.005394 CGCGCACTAACTAAACTGACATAAT 59.995 40.000 8.75 0.00 0.00 1.28
779 2719 6.411652 GCGCACTAACTAAACTGACATAATC 58.588 40.000 0.30 0.00 0.00 1.75
780 2720 6.035650 GCGCACTAACTAAACTGACATAATCA 59.964 38.462 0.30 0.00 35.45 2.57
781 2721 7.254455 GCGCACTAACTAAACTGACATAATCAT 60.254 37.037 0.30 0.00 36.48 2.45
782 2722 8.058328 CGCACTAACTAAACTGACATAATCATG 58.942 37.037 0.00 0.00 36.48 3.07
783 2723 7.852945 GCACTAACTAAACTGACATAATCATGC 59.147 37.037 0.00 0.00 36.48 4.06
784 2724 8.882736 CACTAACTAAACTGACATAATCATGCA 58.117 33.333 0.00 0.00 36.48 3.96
785 2725 9.618890 ACTAACTAAACTGACATAATCATGCAT 57.381 29.630 0.00 0.00 36.48 3.96
786 2726 9.874215 CTAACTAAACTGACATAATCATGCATG 57.126 33.333 21.07 21.07 36.48 4.06
787 2727 7.268199 ACTAAACTGACATAATCATGCATGG 57.732 36.000 25.97 12.19 36.48 3.66
827 2767 4.637276 TCGCCTAACAAATTGTCAGAAGA 58.363 39.130 0.00 0.00 0.00 2.87
845 2785 4.709397 AGAAGATTCGTGAGGAGAGAACAT 59.291 41.667 0.00 0.00 0.00 2.71
1257 3199 3.737172 CCTTTCAAGCCGCACCCG 61.737 66.667 0.00 0.00 0.00 5.28
1275 3217 1.592400 CGAAGGAGTGCCTACCGTCA 61.592 60.000 0.00 0.00 46.28 4.35
1284 3226 1.327690 GCCTACCGTCACTGATGGGA 61.328 60.000 19.65 11.68 42.60 4.37
1350 3292 4.347453 CCACGCCAAGGCAAGTGC 62.347 66.667 12.19 0.00 42.06 4.40
1422 3364 4.612412 TTCAACGGCGGCGACCTT 62.612 61.111 38.93 19.42 0.00 3.50
1446 3388 0.392998 AACTCATGTCGGCACCCATC 60.393 55.000 0.00 0.00 0.00 3.51
1522 3468 0.819582 TGTACCCTGCTACGGTAAGC 59.180 55.000 0.00 0.23 43.08 3.09
1550 3503 9.899661 ATTGCTCTTGTGTGGTACTATAAATTA 57.100 29.630 0.00 0.00 0.00 1.40
1573 3526 9.716507 ATTATTTTGTGTATTATTGTGCTCGTC 57.283 29.630 0.00 0.00 0.00 4.20
1712 3693 8.741101 TGTTTGTTTCTGGATAAATTGAATCG 57.259 30.769 0.00 0.00 0.00 3.34
1747 3729 3.395941 GTGGGGGATAGATTCATTCTGGT 59.604 47.826 0.00 0.00 35.79 4.00
1765 3747 3.156293 TGGTTGCATGCATGAACTAGTT 58.844 40.909 30.64 8.13 0.00 2.24
1778 3760 8.318412 TGCATGAACTAGTTTACCTATTTCTGA 58.682 33.333 10.02 0.00 36.67 3.27
1822 3804 1.580942 GCGTTTTGCAGAGCCATCA 59.419 52.632 0.00 0.00 45.45 3.07
1825 3807 1.469703 CGTTTTGCAGAGCCATCATCA 59.530 47.619 0.00 0.00 0.00 3.07
1831 3813 5.494390 TTGCAGAGCCATCATCATAGTAT 57.506 39.130 0.00 0.00 0.00 2.12
1865 3847 2.511218 AGGATGGAAGCTAAAGATGCCA 59.489 45.455 0.00 0.00 0.00 4.92
1866 3848 3.053395 AGGATGGAAGCTAAAGATGCCAA 60.053 43.478 0.00 0.00 0.00 4.52
1867 3849 3.067320 GGATGGAAGCTAAAGATGCCAAC 59.933 47.826 0.00 0.00 0.00 3.77
1868 3850 2.083774 TGGAAGCTAAAGATGCCAACG 58.916 47.619 0.00 0.00 0.00 4.10
1869 3851 1.202188 GGAAGCTAAAGATGCCAACGC 60.202 52.381 0.00 0.00 0.00 4.84
1871 3853 0.035056 AGCTAAAGATGCCAACGCCT 60.035 50.000 0.00 0.00 0.00 5.52
1872 3854 1.209504 AGCTAAAGATGCCAACGCCTA 59.790 47.619 0.00 0.00 0.00 3.93
1873 3855 2.158755 AGCTAAAGATGCCAACGCCTAT 60.159 45.455 0.00 0.00 0.00 2.57
1874 3856 3.071023 AGCTAAAGATGCCAACGCCTATA 59.929 43.478 0.00 0.00 0.00 1.31
1875 3857 4.003648 GCTAAAGATGCCAACGCCTATAT 58.996 43.478 0.00 0.00 0.00 0.86
1876 3858 4.093556 GCTAAAGATGCCAACGCCTATATC 59.906 45.833 0.00 0.00 0.00 1.63
1878 3860 3.325293 AGATGCCAACGCCTATATCTG 57.675 47.619 0.00 0.00 0.00 2.90
1879 3861 2.634940 AGATGCCAACGCCTATATCTGT 59.365 45.455 0.00 0.00 0.00 3.41
1884 3890 4.585581 TGCCAACGCCTATATCTGTTAGTA 59.414 41.667 0.00 0.00 0.00 1.82
1908 3914 8.992073 GTACGAGTTTTTAGTTCAATTAGGGAA 58.008 33.333 0.00 0.00 0.00 3.97
1936 3942 6.882610 TGTAGCTTCATTTGTGTCAATCTT 57.117 33.333 0.00 0.00 0.00 2.40
1937 3943 7.977789 TGTAGCTTCATTTGTGTCAATCTTA 57.022 32.000 0.00 0.00 0.00 2.10
1948 3954 5.700846 TGTGTCAATCTTAGAGTCGTCTTC 58.299 41.667 0.00 0.00 33.84 2.87
1970 3976 9.825972 TCTTCAGAAAATTTGTTCGTTATGATC 57.174 29.630 0.00 0.00 32.50 2.92
2027 4033 1.873591 GTCCGTGGTATGCAATCATCC 59.126 52.381 0.00 0.00 34.22 3.51
2071 4077 7.271223 CGAATTGTTTAATTACTTGGACTGCTG 59.729 37.037 0.00 0.00 36.66 4.41
2109 4115 7.506114 TGACTATCCAACGCTCCTAATTAATT 58.494 34.615 5.89 5.89 0.00 1.40
2220 4252 1.662629 CGTGTGCATCTCCAACTCATC 59.337 52.381 0.00 0.00 0.00 2.92
2254 4286 9.712305 TCTCTTAAGAAATGTCCAACTTAGAAG 57.288 33.333 6.63 0.00 0.00 2.85
2255 4287 8.324163 TCTTAAGAAATGTCCAACTTAGAAGC 57.676 34.615 1.68 0.00 0.00 3.86
2314 4348 2.171840 AGTCCTGCTATCTTGTGTCGT 58.828 47.619 0.00 0.00 0.00 4.34
2318 4352 1.923204 CTGCTATCTTGTGTCGTGCTC 59.077 52.381 0.00 0.00 0.00 4.26
2320 4354 1.732732 GCTATCTTGTGTCGTGCTCGT 60.733 52.381 8.17 0.00 38.33 4.18
2325 4359 2.427905 GTGTCGTGCTCGTGCGTA 60.428 61.111 8.17 0.00 43.34 4.42
2331 4386 3.755628 TGCTCGTGCGTACCTCCC 61.756 66.667 4.84 0.00 43.34 4.30
2332 4387 4.849329 GCTCGTGCGTACCTCCCG 62.849 72.222 0.00 0.00 0.00 5.14
2365 4420 3.780693 CCACGTACGAGCATGTGG 58.219 61.111 24.41 14.12 46.36 4.17
2381 4436 2.434359 GGTTTCGAGTGCTCCCGG 60.434 66.667 0.00 0.00 0.00 5.73
2469 4524 4.383602 AACGGTTCGCGTGCATGC 62.384 61.111 21.27 21.27 0.00 4.06
2485 4540 3.959975 GCCGGTCTGCGTGCAAAA 61.960 61.111 1.90 0.00 0.00 2.44
2505 4560 4.684484 AAAACTGACTAAACGGGACTCT 57.316 40.909 0.00 0.00 0.00 3.24
2506 4561 3.938289 AACTGACTAAACGGGACTCTC 57.062 47.619 0.00 0.00 0.00 3.20
2507 4562 1.811359 ACTGACTAAACGGGACTCTCG 59.189 52.381 0.00 0.00 0.00 4.04
2508 4563 1.132643 CTGACTAAACGGGACTCTCGG 59.867 57.143 2.78 0.00 0.00 4.63
2509 4564 1.271543 TGACTAAACGGGACTCTCGGA 60.272 52.381 2.78 0.00 0.00 4.55
2510 4565 1.132073 GACTAAACGGGACTCTCGGAC 59.868 57.143 2.78 0.00 0.00 4.79
2511 4566 1.271817 ACTAAACGGGACTCTCGGACT 60.272 52.381 2.78 0.00 0.00 3.85
2512 4567 2.026822 ACTAAACGGGACTCTCGGACTA 60.027 50.000 2.78 0.00 0.00 2.59
2513 4568 1.461559 AAACGGGACTCTCGGACTAG 58.538 55.000 2.78 0.00 0.00 2.57
2514 4569 0.617413 AACGGGACTCTCGGACTAGA 59.383 55.000 2.78 0.00 0.00 2.43
2516 4571 0.464870 CGGGACTCTCGGACTAGAGA 59.535 60.000 7.83 6.67 44.93 3.10
2517 4572 1.134461 CGGGACTCTCGGACTAGAGAA 60.134 57.143 7.83 0.00 45.52 2.87
2518 4573 2.680221 CGGGACTCTCGGACTAGAGAAA 60.680 54.545 7.83 0.00 45.52 2.52
2519 4574 2.684374 GGGACTCTCGGACTAGAGAAAC 59.316 54.545 7.83 4.98 45.52 2.78
2520 4575 3.613030 GGACTCTCGGACTAGAGAAACT 58.387 50.000 7.83 0.00 45.52 2.66
2521 4576 4.383989 GGGACTCTCGGACTAGAGAAACTA 60.384 50.000 7.83 0.00 45.52 2.24
2533 4588 4.612264 AGAGAAACTAGTAAAACGCCCA 57.388 40.909 0.00 0.00 0.00 5.36
2534 4589 5.161943 AGAGAAACTAGTAAAACGCCCAT 57.838 39.130 0.00 0.00 0.00 4.00
2535 4590 6.290294 AGAGAAACTAGTAAAACGCCCATA 57.710 37.500 0.00 0.00 0.00 2.74
2536 4591 6.104665 AGAGAAACTAGTAAAACGCCCATAC 58.895 40.000 0.00 0.00 0.00 2.39
2537 4592 4.866486 AGAAACTAGTAAAACGCCCATACG 59.134 41.667 0.00 0.00 39.50 3.06
2544 4599 4.507879 ACGCCCATACGTTGCTAC 57.492 55.556 0.00 0.00 45.75 3.58
2553 4608 4.582760 CGTTGCTACGGGCTACAA 57.417 55.556 13.04 0.00 44.60 2.41
2554 4609 3.059603 CGTTGCTACGGGCTACAAT 57.940 52.632 13.04 0.00 44.60 2.71
2555 4610 0.650512 CGTTGCTACGGGCTACAATG 59.349 55.000 13.04 2.25 44.60 2.82
2556 4611 0.377203 GTTGCTACGGGCTACAATGC 59.623 55.000 10.86 0.00 43.99 3.56
2557 4612 0.035915 TTGCTACGGGCTACAATGCA 60.036 50.000 0.00 0.00 42.39 3.96
2558 4613 0.180171 TGCTACGGGCTACAATGCAT 59.820 50.000 0.00 0.00 42.39 3.96
2559 4614 0.588252 GCTACGGGCTACAATGCATG 59.412 55.000 0.00 0.00 38.06 4.06
2560 4615 0.588252 CTACGGGCTACAATGCATGC 59.412 55.000 11.82 11.82 34.04 4.06
2561 4616 0.107459 TACGGGCTACAATGCATGCA 60.107 50.000 25.04 25.04 34.04 3.96
2562 4617 0.752743 ACGGGCTACAATGCATGCAT 60.753 50.000 27.46 27.46 38.46 3.96
2563 4618 1.237533 CGGGCTACAATGCATGCATA 58.762 50.000 32.36 16.88 35.31 3.14
2564 4619 1.814394 CGGGCTACAATGCATGCATAT 59.186 47.619 32.36 24.52 35.31 1.78
2565 4620 3.009026 CGGGCTACAATGCATGCATATA 58.991 45.455 32.36 24.34 35.31 0.86
2566 4621 3.439825 CGGGCTACAATGCATGCATATAA 59.560 43.478 32.36 18.75 35.31 0.98
2567 4622 4.082841 CGGGCTACAATGCATGCATATAAA 60.083 41.667 32.36 17.09 35.31 1.40
2568 4623 5.393352 CGGGCTACAATGCATGCATATAAAT 60.393 40.000 32.36 14.71 35.31 1.40
2569 4624 5.808540 GGGCTACAATGCATGCATATAAATG 59.191 40.000 32.36 26.47 35.31 2.32
2570 4625 6.350361 GGGCTACAATGCATGCATATAAATGA 60.350 38.462 32.36 14.84 35.31 2.57
2571 4626 7.092079 GGCTACAATGCATGCATATAAATGAA 58.908 34.615 32.36 11.76 35.31 2.57
2572 4627 7.762615 GGCTACAATGCATGCATATAAATGAAT 59.237 33.333 32.36 11.64 35.31 2.57
2573 4628 8.804743 GCTACAATGCATGCATATAAATGAATC 58.195 33.333 32.36 15.49 35.31 2.52
2574 4629 9.849166 CTACAATGCATGCATATAAATGAATCA 57.151 29.630 32.36 13.21 35.31 2.57
2576 4631 9.549078 ACAATGCATGCATATAAATGAATCAAA 57.451 25.926 32.36 0.00 35.31 2.69
2577 4632 9.805966 CAATGCATGCATATAAATGAATCAAAC 57.194 29.630 32.36 0.00 35.31 2.93
2578 4633 9.549078 AATGCATGCATATAAATGAATCAAACA 57.451 25.926 32.36 0.00 35.31 2.83
2579 4634 8.943909 TGCATGCATATAAATGAATCAAACAA 57.056 26.923 18.46 0.00 34.84 2.83
2580 4635 9.379791 TGCATGCATATAAATGAATCAAACAAA 57.620 25.926 18.46 0.00 34.84 2.83
2597 4652 8.975410 TCAAACAAATGATAAGATCAAAGCTG 57.025 30.769 0.00 0.00 43.50 4.24
2598 4653 8.030692 TCAAACAAATGATAAGATCAAAGCTGG 58.969 33.333 0.00 0.00 43.50 4.85
2599 4654 7.707624 AACAAATGATAAGATCAAAGCTGGA 57.292 32.000 0.00 0.00 43.50 3.86
2600 4655 7.893124 ACAAATGATAAGATCAAAGCTGGAT 57.107 32.000 0.99 0.99 43.50 3.41
2601 4656 8.302515 ACAAATGATAAGATCAAAGCTGGATT 57.697 30.769 0.00 0.00 43.50 3.01
2602 4657 8.755977 ACAAATGATAAGATCAAAGCTGGATTT 58.244 29.630 0.00 0.00 43.50 2.17
2605 4660 9.638176 AATGATAAGATCAAAGCTGGATTTAGT 57.362 29.630 0.00 0.00 43.50 2.24
2610 4665 8.814038 AAGATCAAAGCTGGATTTAGTATGTT 57.186 30.769 0.00 0.00 0.00 2.71
2611 4666 9.905713 AAGATCAAAGCTGGATTTAGTATGTTA 57.094 29.630 0.00 0.00 0.00 2.41
2612 4667 9.553064 AGATCAAAGCTGGATTTAGTATGTTAG 57.447 33.333 0.00 0.00 0.00 2.34
2613 4668 8.682936 ATCAAAGCTGGATTTAGTATGTTAGG 57.317 34.615 0.00 0.00 0.00 2.69
2614 4669 7.630082 TCAAAGCTGGATTTAGTATGTTAGGT 58.370 34.615 0.00 0.00 0.00 3.08
2615 4670 7.552687 TCAAAGCTGGATTTAGTATGTTAGGTG 59.447 37.037 0.00 0.00 0.00 4.00
2616 4671 5.368989 AGCTGGATTTAGTATGTTAGGTGC 58.631 41.667 0.00 0.00 0.00 5.01
2617 4672 5.104527 AGCTGGATTTAGTATGTTAGGTGCA 60.105 40.000 0.00 0.00 0.00 4.57
2618 4673 5.007724 GCTGGATTTAGTATGTTAGGTGCAC 59.992 44.000 8.80 8.80 0.00 4.57
2619 4674 5.113383 TGGATTTAGTATGTTAGGTGCACG 58.887 41.667 11.45 0.00 0.00 5.34
2620 4675 5.114081 GGATTTAGTATGTTAGGTGCACGT 58.886 41.667 17.24 17.24 0.00 4.49
2621 4676 5.006358 GGATTTAGTATGTTAGGTGCACGTG 59.994 44.000 21.78 12.28 0.00 4.49
2622 4677 1.722011 AGTATGTTAGGTGCACGTGC 58.278 50.000 33.11 33.11 42.50 5.34
2633 4688 3.415237 GCACGTGCAATGCCATAAA 57.585 47.368 34.52 0.00 41.59 1.40
2634 4689 1.707632 GCACGTGCAATGCCATAAAA 58.292 45.000 34.52 0.00 41.59 1.52
2635 4690 1.655099 GCACGTGCAATGCCATAAAAG 59.345 47.619 34.52 0.00 41.59 2.27
2636 4691 2.670789 GCACGTGCAATGCCATAAAAGA 60.671 45.455 34.52 0.00 41.59 2.52
2637 4692 3.772932 CACGTGCAATGCCATAAAAGAT 58.227 40.909 0.82 0.00 0.00 2.40
2638 4693 3.792956 CACGTGCAATGCCATAAAAGATC 59.207 43.478 0.82 0.00 0.00 2.75
2639 4694 3.038017 CGTGCAATGCCATAAAAGATCG 58.962 45.455 1.53 0.00 0.00 3.69
2640 4695 2.791004 GTGCAATGCCATAAAAGATCGC 59.209 45.455 1.53 0.00 0.00 4.58
2641 4696 2.223782 TGCAATGCCATAAAAGATCGCC 60.224 45.455 1.53 0.00 0.00 5.54
2642 4697 2.863704 GCAATGCCATAAAAGATCGCCC 60.864 50.000 0.00 0.00 0.00 6.13
2643 4698 1.238439 ATGCCATAAAAGATCGCCCG 58.762 50.000 0.00 0.00 0.00 6.13
2644 4699 0.179234 TGCCATAAAAGATCGCCCGA 59.821 50.000 0.00 0.00 0.00 5.14
2645 4700 1.305201 GCCATAAAAGATCGCCCGAA 58.695 50.000 0.00 0.00 0.00 4.30
2646 4701 1.264288 GCCATAAAAGATCGCCCGAAG 59.736 52.381 0.00 0.00 0.00 3.79
2647 4702 2.833794 CCATAAAAGATCGCCCGAAGA 58.166 47.619 0.00 0.00 0.00 2.87
2648 4703 2.544267 CCATAAAAGATCGCCCGAAGAC 59.456 50.000 0.00 0.00 0.00 3.01
2649 4704 2.304751 TAAAAGATCGCCCGAAGACC 57.695 50.000 0.00 0.00 0.00 3.85
2650 4705 0.392595 AAAAGATCGCCCGAAGACCC 60.393 55.000 0.00 0.00 0.00 4.46
2651 4706 1.265454 AAAGATCGCCCGAAGACCCT 61.265 55.000 0.00 0.00 0.00 4.34
2652 4707 1.265454 AAGATCGCCCGAAGACCCTT 61.265 55.000 0.00 0.00 0.00 3.95
2653 4708 1.521681 GATCGCCCGAAGACCCTTG 60.522 63.158 0.00 0.00 0.00 3.61
2654 4709 2.240162 GATCGCCCGAAGACCCTTGT 62.240 60.000 0.00 0.00 0.00 3.16
2655 4710 2.240162 ATCGCCCGAAGACCCTTGTC 62.240 60.000 0.00 0.00 42.09 3.18
2665 4720 2.658807 GACCCTTGTCTTTGGAAGGT 57.341 50.000 0.00 0.00 37.61 3.50
2666 4721 2.230660 GACCCTTGTCTTTGGAAGGTG 58.769 52.381 0.00 0.00 37.61 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.400568 CATGCCTTTAATGAAAGTTCATGGT 58.599 36.000 18.50 0.00 46.60 3.55
1 2 5.292589 GCATGCCTTTAATGAAAGTTCATGG 59.707 40.000 23.17 5.70 46.60 3.66
2 3 5.870433 TGCATGCCTTTAATGAAAGTTCATG 59.130 36.000 16.68 20.36 46.60 3.07
4 5 5.465532 TGCATGCCTTTAATGAAAGTTCA 57.534 34.783 16.68 0.00 40.53 3.18
5 6 7.260603 AGTATGCATGCCTTTAATGAAAGTTC 58.739 34.615 16.68 0.00 40.53 3.01
6 7 7.174107 AGTATGCATGCCTTTAATGAAAGTT 57.826 32.000 16.68 0.00 40.53 2.66
7 8 6.780457 AGTATGCATGCCTTTAATGAAAGT 57.220 33.333 16.68 0.00 40.53 2.66
8 9 8.483307 AAAAGTATGCATGCCTTTAATGAAAG 57.517 30.769 16.68 0.00 41.61 2.62
9 10 8.845413 AAAAAGTATGCATGCCTTTAATGAAA 57.155 26.923 16.68 0.00 0.00 2.69
42 43 9.780413 GTTGCAAATTTTGGAAAAATGTTTCTA 57.220 25.926 16.30 0.00 42.69 2.10
43 44 7.758980 GGTTGCAAATTTTGGAAAAATGTTTCT 59.241 29.630 16.30 0.00 42.69 2.52
44 45 7.543520 TGGTTGCAAATTTTGGAAAAATGTTTC 59.456 29.630 16.30 0.00 42.69 2.78
45 46 7.381323 TGGTTGCAAATTTTGGAAAAATGTTT 58.619 26.923 16.30 0.00 42.69 2.83
46 47 6.928520 TGGTTGCAAATTTTGGAAAAATGTT 58.071 28.000 16.30 0.00 42.69 2.71
47 48 6.521151 TGGTTGCAAATTTTGGAAAAATGT 57.479 29.167 16.30 0.00 42.69 2.71
48 49 9.694137 AATATGGTTGCAAATTTTGGAAAAATG 57.306 25.926 16.30 0.00 42.69 2.32
49 50 9.911138 GAATATGGTTGCAAATTTTGGAAAAAT 57.089 25.926 16.30 14.42 42.69 1.82
50 51 9.129532 AGAATATGGTTGCAAATTTTGGAAAAA 57.870 25.926 16.30 9.07 42.69 1.94
51 52 8.688747 AGAATATGGTTGCAAATTTTGGAAAA 57.311 26.923 16.30 9.38 42.69 2.29
52 53 9.784531 TTAGAATATGGTTGCAAATTTTGGAAA 57.215 25.926 16.30 4.25 42.69 3.13
53 54 9.784531 TTTAGAATATGGTTGCAAATTTTGGAA 57.215 25.926 11.48 11.48 38.73 3.53
54 55 9.784531 TTTTAGAATATGGTTGCAAATTTTGGA 57.215 25.926 0.00 5.24 0.00 3.53
82 83 9.903682 GCATGATATTTTATTAAGTGCTCACAT 57.096 29.630 0.00 0.00 0.00 3.21
83 84 8.069574 CGCATGATATTTTATTAAGTGCTCACA 58.930 33.333 0.00 0.00 0.00 3.58
84 85 7.059945 GCGCATGATATTTTATTAAGTGCTCAC 59.940 37.037 0.30 0.00 0.00 3.51
85 86 7.077605 GCGCATGATATTTTATTAAGTGCTCA 58.922 34.615 0.30 0.00 0.00 4.26
86 87 7.077605 TGCGCATGATATTTTATTAAGTGCTC 58.922 34.615 5.66 0.00 0.00 4.26
87 88 6.969366 TGCGCATGATATTTTATTAAGTGCT 58.031 32.000 5.66 0.00 0.00 4.40
88 89 7.801547 ATGCGCATGATATTTTATTAAGTGC 57.198 32.000 24.69 0.00 0.00 4.40
98 99 9.478768 TCATTTTGAAATATGCGCATGATATTT 57.521 25.926 32.48 27.09 38.25 1.40
99 100 9.647797 ATCATTTTGAAATATGCGCATGATATT 57.352 25.926 32.48 20.71 30.15 1.28
100 101 9.647797 AATCATTTTGAAATATGCGCATGATAT 57.352 25.926 32.48 15.71 31.40 1.63
102 103 7.956420 AATCATTTTGAAATATGCGCATGAT 57.044 28.000 32.48 19.91 32.66 2.45
103 104 9.478768 AATAATCATTTTGAAATATGCGCATGA 57.521 25.926 32.48 18.50 0.00 3.07
143 144 9.599322 CGGTGCTGCTATTTTAGAATATTTTAG 57.401 33.333 0.00 0.00 0.00 1.85
144 145 9.332502 TCGGTGCTGCTATTTTAGAATATTTTA 57.667 29.630 0.00 0.00 0.00 1.52
145 146 8.220755 TCGGTGCTGCTATTTTAGAATATTTT 57.779 30.769 0.00 0.00 0.00 1.82
146 147 7.801716 TCGGTGCTGCTATTTTAGAATATTT 57.198 32.000 0.00 0.00 0.00 1.40
147 148 7.810658 CATCGGTGCTGCTATTTTAGAATATT 58.189 34.615 0.00 0.00 0.00 1.28
148 149 7.369803 CATCGGTGCTGCTATTTTAGAATAT 57.630 36.000 0.00 0.00 0.00 1.28
149 150 6.785488 CATCGGTGCTGCTATTTTAGAATA 57.215 37.500 0.00 0.00 0.00 1.75
150 151 5.679734 CATCGGTGCTGCTATTTTAGAAT 57.320 39.130 0.00 0.00 0.00 2.40
165 166 2.484062 GGGCCTCAATGCATCGGTG 61.484 63.158 0.84 0.00 0.00 4.94
166 167 1.344953 TAGGGCCTCAATGCATCGGT 61.345 55.000 10.74 0.00 0.00 4.69
167 168 0.604780 CTAGGGCCTCAATGCATCGG 60.605 60.000 10.74 2.21 0.00 4.18
168 169 1.233285 GCTAGGGCCTCAATGCATCG 61.233 60.000 10.74 0.00 0.00 3.84
169 170 0.110104 AGCTAGGGCCTCAATGCATC 59.890 55.000 10.74 0.00 39.73 3.91
170 171 0.554792 AAGCTAGGGCCTCAATGCAT 59.445 50.000 10.74 0.52 39.73 3.96
171 172 0.394762 CAAGCTAGGGCCTCAATGCA 60.395 55.000 10.74 0.00 39.73 3.96
172 173 1.732417 GCAAGCTAGGGCCTCAATGC 61.732 60.000 10.74 13.55 39.73 3.56
173 174 1.105759 GGCAAGCTAGGGCCTCAATG 61.106 60.000 10.74 6.76 46.74 2.82
174 175 1.228510 GGCAAGCTAGGGCCTCAAT 59.771 57.895 10.74 0.00 46.74 2.57
175 176 2.677228 GGCAAGCTAGGGCCTCAA 59.323 61.111 10.74 0.00 46.74 3.02
180 181 2.191641 CTCCTGGCAAGCTAGGGC 59.808 66.667 22.07 2.82 43.78 5.19
181 182 2.750657 CCCTCCTGGCAAGCTAGGG 61.751 68.421 22.07 11.39 43.78 3.53
182 183 2.914289 CCCTCCTGGCAAGCTAGG 59.086 66.667 17.37 17.37 44.80 3.02
193 194 3.665971 CCAAAGCCAGGCCCTCCT 61.666 66.667 8.22 0.00 45.66 3.69
200 201 1.246737 GGTCTTCTGCCAAAGCCAGG 61.247 60.000 0.00 0.00 38.69 4.45
201 202 0.251077 AGGTCTTCTGCCAAAGCCAG 60.251 55.000 9.59 0.00 38.69 4.85
202 203 1.064003 TAGGTCTTCTGCCAAAGCCA 58.936 50.000 9.59 0.00 38.69 4.75
203 204 1.271379 TGTAGGTCTTCTGCCAAAGCC 60.271 52.381 0.00 0.00 38.69 4.35
204 205 2.185004 TGTAGGTCTTCTGCCAAAGC 57.815 50.000 0.00 0.00 40.48 3.51
205 206 3.744660 AGTTGTAGGTCTTCTGCCAAAG 58.255 45.455 0.00 0.00 0.00 2.77
206 207 3.857157 AGTTGTAGGTCTTCTGCCAAA 57.143 42.857 0.00 0.00 0.00 3.28
207 208 3.857157 AAGTTGTAGGTCTTCTGCCAA 57.143 42.857 0.00 0.00 0.00 4.52
208 209 3.901844 ACTAAGTTGTAGGTCTTCTGCCA 59.098 43.478 0.00 0.00 0.00 4.92
209 210 4.538746 ACTAAGTTGTAGGTCTTCTGCC 57.461 45.455 0.00 0.00 0.00 4.85
210 211 6.094061 CACTACTAAGTTGTAGGTCTTCTGC 58.906 44.000 13.52 0.00 42.92 4.26
211 212 7.085116 CACACTACTAAGTTGTAGGTCTTCTG 58.915 42.308 13.52 6.97 42.92 3.02
212 213 6.208994 CCACACTACTAAGTTGTAGGTCTTCT 59.791 42.308 13.52 0.00 42.92 2.85
213 214 6.208204 TCCACACTACTAAGTTGTAGGTCTTC 59.792 42.308 13.52 0.00 42.92 2.87
214 215 6.073314 TCCACACTACTAAGTTGTAGGTCTT 58.927 40.000 13.52 0.00 42.92 3.01
215 216 5.638133 TCCACACTACTAAGTTGTAGGTCT 58.362 41.667 13.52 0.00 42.92 3.85
216 217 5.972107 TCCACACTACTAAGTTGTAGGTC 57.028 43.478 13.52 0.00 42.92 3.85
217 218 8.475639 CAATATCCACACTACTAAGTTGTAGGT 58.524 37.037 13.52 8.12 42.92 3.08
218 219 7.438459 GCAATATCCACACTACTAAGTTGTAGG 59.562 40.741 13.52 1.85 42.92 3.18
219 220 7.979537 TGCAATATCCACACTACTAAGTTGTAG 59.020 37.037 9.55 9.55 43.88 2.74
220 221 7.842982 TGCAATATCCACACTACTAAGTTGTA 58.157 34.615 0.00 0.00 31.97 2.41
221 222 6.707290 TGCAATATCCACACTACTAAGTTGT 58.293 36.000 0.00 0.00 31.97 3.32
222 223 7.041780 GGATGCAATATCCACACTACTAAGTTG 60.042 40.741 0.00 0.00 38.09 3.16
223 224 6.992715 GGATGCAATATCCACACTACTAAGTT 59.007 38.462 0.00 0.00 38.09 2.66
224 225 6.525629 GGATGCAATATCCACACTACTAAGT 58.474 40.000 0.00 0.00 38.09 2.24
233 234 3.261643 AGCTATCGGATGCAATATCCACA 59.738 43.478 5.70 0.00 38.08 4.17
235 236 3.515104 TGAGCTATCGGATGCAATATCCA 59.485 43.478 5.70 0.00 38.08 3.41
247 248 2.224042 TGCACTACCAATGAGCTATCGG 60.224 50.000 0.00 0.00 0.00 4.18
249 250 4.697514 TCTTGCACTACCAATGAGCTATC 58.302 43.478 0.00 0.00 0.00 2.08
251 252 4.760530 ATCTTGCACTACCAATGAGCTA 57.239 40.909 0.00 0.00 0.00 3.32
253 254 5.059161 TGATATCTTGCACTACCAATGAGC 58.941 41.667 3.98 0.00 0.00 4.26
258 259 5.172687 TGGTTGATATCTTGCACTACCAA 57.827 39.130 3.98 0.00 35.88 3.67
260 261 5.822519 TCATTGGTTGATATCTTGCACTACC 59.177 40.000 3.98 0.00 0.00 3.18
263 264 5.533903 GGATCATTGGTTGATATCTTGCACT 59.466 40.000 3.98 0.00 45.29 4.40
267 268 6.015688 CCTTGGGATCATTGGTTGATATCTTG 60.016 42.308 3.98 0.00 45.29 3.02
282 283 1.345422 ACCATAGGCTCCTTGGGATCA 60.345 52.381 13.63 0.00 34.72 2.92
295 296 5.624159 TCTCCTTGATAATTGCACCATAGG 58.376 41.667 0.00 0.00 0.00 2.57
341 342 4.865925 TCATGCATGAAAAAGCAACTATGC 59.134 37.500 26.87 0.00 44.88 3.14
396 397 1.063327 TTGCCACGTGTTTCGCAAG 59.937 52.632 21.10 3.25 44.19 4.01
404 405 1.624336 TACCTAGAGTTGCCACGTGT 58.376 50.000 15.65 0.00 0.00 4.49
409 410 3.220110 CGTCCTATACCTAGAGTTGCCA 58.780 50.000 0.00 0.00 0.00 4.92
411 412 2.621998 TGCGTCCTATACCTAGAGTTGC 59.378 50.000 0.00 0.00 0.00 4.17
457 458 9.174166 GAATGTTTACAGGTACAGAAATATGGT 57.826 33.333 0.00 0.00 0.00 3.55
464 465 6.426937 GCTCAAGAATGTTTACAGGTACAGAA 59.573 38.462 0.00 0.00 0.00 3.02
466 467 5.700832 TGCTCAAGAATGTTTACAGGTACAG 59.299 40.000 0.00 0.00 0.00 2.74
471 472 8.299570 ACTTTATTGCTCAAGAATGTTTACAGG 58.700 33.333 3.63 0.00 29.41 4.00
479 480 6.857964 ACACGAAACTTTATTGCTCAAGAATG 59.142 34.615 0.00 2.62 0.00 2.67
508 782 2.127251 GGTGCTTTTTCTTTTGAGGCG 58.873 47.619 0.00 0.00 0.00 5.52
518 792 1.007387 CCAGCGTGGGTGCTTTTTC 60.007 57.895 0.00 0.00 44.46 2.29
533 807 3.951332 CAGCACACGGTGTACCAG 58.049 61.111 14.30 2.59 35.75 4.00
541 815 2.639286 GCCTCAAACAGCACACGG 59.361 61.111 0.00 0.00 0.00 4.94
543 817 1.009675 CACGCCTCAAACAGCACAC 60.010 57.895 0.00 0.00 0.00 3.82
550 824 2.324860 GCAATTTACCACGCCTCAAAC 58.675 47.619 0.00 0.00 0.00 2.93
558 832 3.438781 ACACACATAGGCAATTTACCACG 59.561 43.478 0.00 0.00 0.00 4.94
564 838 4.502950 CCACCAAACACACATAGGCAATTT 60.503 41.667 0.00 0.00 0.00 1.82
575 849 1.654317 TACACGTCCACCAAACACAC 58.346 50.000 0.00 0.00 0.00 3.82
613 2277 3.111098 GGAGTGTTAGTTATGTACGGCG 58.889 50.000 4.80 4.80 0.00 6.46
620 2284 6.404734 GCAAGGGAAATGGAGTGTTAGTTATG 60.405 42.308 0.00 0.00 0.00 1.90
651 2315 7.290813 GGAGACTTGGTATTTGATAAGGGATT 58.709 38.462 0.00 0.00 0.00 3.01
659 2323 3.055094 ACTGCGGAGACTTGGTATTTGAT 60.055 43.478 12.26 0.00 0.00 2.57
677 2341 1.734163 ATAAGCCCGTGTAACACTGC 58.266 50.000 0.00 0.00 35.74 4.40
679 2343 4.748277 ATGTATAAGCCCGTGTAACACT 57.252 40.909 0.00 0.00 35.74 3.55
680 2344 4.446719 GCTATGTATAAGCCCGTGTAACAC 59.553 45.833 0.00 0.00 32.45 3.32
745 2685 1.135746 AGTTAGTGCGCGAGTGTAGTC 60.136 52.381 12.10 0.00 0.00 2.59
755 2695 5.773239 TTATGTCAGTTTAGTTAGTGCGC 57.227 39.130 0.00 0.00 0.00 6.09
783 2723 1.741055 GCATGTGGGTTGCAATCCATG 60.741 52.381 33.20 27.42 39.90 3.66
784 2724 0.538118 GCATGTGGGTTGCAATCCAT 59.462 50.000 33.20 16.86 39.90 3.41
785 2725 0.830866 TGCATGTGGGTTGCAATCCA 60.831 50.000 27.82 27.82 46.48 3.41
786 2726 1.973760 TGCATGTGGGTTGCAATCC 59.026 52.632 22.52 22.52 46.48 3.01
827 2767 6.723298 ATCTTATGTTCTCTCCTCACGAAT 57.277 37.500 0.00 0.00 0.00 3.34
845 2785 6.549242 TCTGTTAGGGTCGATCCATATCTTA 58.451 40.000 19.03 0.00 38.11 2.10
1230 3172 1.000896 CTTGAAAGGGGATGGCGGT 60.001 57.895 0.00 0.00 0.00 5.68
1257 3199 2.273908 TGACGGTAGGCACTCCTTC 58.726 57.895 0.00 0.00 40.66 3.46
1275 3217 1.133884 CATGGCATCAGTCCCATCAGT 60.134 52.381 0.00 0.00 39.76 3.41
1284 3226 4.079558 AGGAAATCCTTACATGGCATCAGT 60.080 41.667 0.00 0.00 46.09 3.41
1422 3364 1.225855 GTGCCGACATGAGTTTGTCA 58.774 50.000 0.00 0.00 45.08 3.58
1446 3388 1.089920 CAAAGAGTTGGCCTCCATCG 58.910 55.000 3.32 0.00 41.47 3.84
1522 3468 8.942338 TTTATAGTACCACACAAGAGCAATAG 57.058 34.615 0.00 0.00 0.00 1.73
1550 3503 7.377766 AGACGAGCACAATAATACACAAAAT 57.622 32.000 0.00 0.00 0.00 1.82
1553 3506 6.795098 AAAGACGAGCACAATAATACACAA 57.205 33.333 0.00 0.00 0.00 3.33
1603 3583 0.935898 CGTCTGCTCTCCAATGCATC 59.064 55.000 0.00 0.00 38.59 3.91
1607 3587 1.364626 GGCACGTCTGCTCTCCAATG 61.365 60.000 0.00 0.00 43.66 2.82
1642 3622 0.470341 GAGCAGCTTTAGGGGTAGGG 59.530 60.000 0.00 0.00 0.00 3.53
1721 3702 5.893255 CAGAATGAATCTATCCCCCACAAAA 59.107 40.000 0.00 0.00 39.69 2.44
1722 3703 5.448654 CAGAATGAATCTATCCCCCACAAA 58.551 41.667 0.00 0.00 39.69 2.83
1723 3704 4.141181 CCAGAATGAATCTATCCCCCACAA 60.141 45.833 0.00 0.00 39.69 3.33
1724 3705 3.395607 CCAGAATGAATCTATCCCCCACA 59.604 47.826 0.00 0.00 39.69 4.17
1730 3711 5.564259 GCATGCAACCAGAATGAATCTATCC 60.564 44.000 14.21 0.00 39.69 2.59
1747 3729 5.009631 AGGTAAACTAGTTCATGCATGCAA 58.990 37.500 26.68 13.69 0.00 4.08
1782 3764 9.575783 AACGCGGATAAACACAAATTAAATTAT 57.424 25.926 12.47 0.00 0.00 1.28
1791 3773 2.789893 GCAAAACGCGGATAAACACAAA 59.210 40.909 12.47 0.00 0.00 2.83
1822 3804 9.766754 ATCCTGTCTCTGTAATGATACTATGAT 57.233 33.333 0.00 0.00 32.98 2.45
1825 3807 8.173412 TCCATCCTGTCTCTGTAATGATACTAT 58.827 37.037 0.00 0.00 32.98 2.12
1831 3813 4.141846 GCTTCCATCCTGTCTCTGTAATGA 60.142 45.833 0.00 0.00 0.00 2.57
1845 3827 2.936202 TGGCATCTTTAGCTTCCATCC 58.064 47.619 0.00 0.00 0.00 3.51
1865 3847 5.762218 ACTCGTACTAACAGATATAGGCGTT 59.238 40.000 0.00 0.00 0.00 4.84
1866 3848 5.303971 ACTCGTACTAACAGATATAGGCGT 58.696 41.667 0.00 0.00 0.00 5.68
1867 3849 5.859521 ACTCGTACTAACAGATATAGGCG 57.140 43.478 0.00 0.00 0.00 5.52
1868 3850 8.868635 AAAAACTCGTACTAACAGATATAGGC 57.131 34.615 0.00 0.00 0.00 3.93
1874 3856 9.754382 TTGAACTAAAAACTCGTACTAACAGAT 57.246 29.630 0.00 0.00 0.00 2.90
1875 3857 9.754382 ATTGAACTAAAAACTCGTACTAACAGA 57.246 29.630 0.00 0.00 0.00 3.41
1884 3890 7.935210 TCTTCCCTAATTGAACTAAAAACTCGT 59.065 33.333 0.00 0.00 0.00 4.18
1908 3914 8.743085 ATTGACACAAATGAAGCTACATATCT 57.257 30.769 0.00 0.00 0.00 1.98
1936 3942 7.096189 CGAACAAATTTTCTGAAGACGACTCTA 60.096 37.037 0.00 0.00 0.00 2.43
1937 3943 6.292381 CGAACAAATTTTCTGAAGACGACTCT 60.292 38.462 0.00 0.00 0.00 3.24
1948 3954 7.744276 TGACGATCATAACGAACAAATTTTCTG 59.256 33.333 0.00 0.00 34.70 3.02
1984 3990 9.935241 GGACATTCATAGAGAACACACATATAT 57.065 33.333 0.00 0.00 39.49 0.86
1985 3991 8.082242 CGGACATTCATAGAGAACACACATATA 58.918 37.037 0.00 0.00 39.49 0.86
1986 3992 6.925718 CGGACATTCATAGAGAACACACATAT 59.074 38.462 0.00 0.00 39.49 1.78
1987 3993 6.127451 ACGGACATTCATAGAGAACACACATA 60.127 38.462 0.00 0.00 39.49 2.29
1988 3994 5.111989 CGGACATTCATAGAGAACACACAT 58.888 41.667 0.00 0.00 39.49 3.21
1999 4005 3.727726 TGCATACCACGGACATTCATAG 58.272 45.455 0.00 0.00 0.00 2.23
2027 4033 3.416119 TCGATAACTAGGTGCTCGTTG 57.584 47.619 12.53 0.00 0.00 4.10
2068 4074 1.078637 TCAGGAGAGCATGCACAGC 60.079 57.895 21.98 9.83 0.00 4.40
2071 4077 2.547642 GGATAGTCAGGAGAGCATGCAC 60.548 54.545 21.98 14.59 0.00 4.57
2241 4273 5.919272 AGTAAAACGCTTCTAAGTTGGAC 57.081 39.130 0.00 0.00 0.00 4.02
2254 4286 5.465724 TCCTCTCTCTCAAAAAGTAAAACGC 59.534 40.000 0.00 0.00 0.00 4.84
2255 4287 6.073711 GGTCCTCTCTCTCAAAAAGTAAAACG 60.074 42.308 0.00 0.00 0.00 3.60
2314 4348 3.755628 GGGAGGTACGCACGAGCA 61.756 66.667 5.50 0.00 42.27 4.26
2337 4392 4.409218 TACGTGGTCGCGTCAGGC 62.409 66.667 12.90 3.76 44.55 4.85
2338 4393 2.503375 GTACGTGGTCGCGTCAGG 60.503 66.667 12.90 13.89 44.55 3.86
2339 4394 2.868331 CGTACGTGGTCGCGTCAG 60.868 66.667 12.90 5.26 44.55 3.51
2340 4395 3.299304 CTCGTACGTGGTCGCGTCA 62.299 63.158 16.05 3.05 44.55 4.35
2341 4396 2.572647 CTCGTACGTGGTCGCGTC 60.573 66.667 16.05 0.00 44.55 5.19
2343 4398 4.746951 TGCTCGTACGTGGTCGCG 62.747 66.667 16.05 0.00 41.18 5.87
2344 4399 2.202570 ATGCTCGTACGTGGTCGC 60.203 61.111 16.05 11.37 41.18 5.19
2345 4400 1.154093 ACATGCTCGTACGTGGTCG 60.154 57.895 16.05 5.26 43.34 4.79
2346 4401 1.076533 CCACATGCTCGTACGTGGTC 61.077 60.000 16.05 1.63 43.23 4.02
2347 4402 1.080093 CCACATGCTCGTACGTGGT 60.080 57.895 16.05 3.60 43.23 4.16
2348 4403 3.780693 CCACATGCTCGTACGTGG 58.219 61.111 16.05 10.51 42.72 4.94
2351 4406 0.365523 CGAAACCACATGCTCGTACG 59.634 55.000 9.53 9.53 0.00 3.67
2365 4420 0.601841 TTTCCGGGAGCACTCGAAAC 60.602 55.000 4.50 0.00 43.41 2.78
2414 4469 2.053638 GCGCGATGATGCAAGACG 60.054 61.111 12.10 0.00 34.15 4.18
2416 4471 1.153588 TGAGCGCGATGATGCAAGA 60.154 52.632 12.10 0.00 34.15 3.02
2419 4474 2.891936 GGTGAGCGCGATGATGCA 60.892 61.111 12.10 0.00 34.15 3.96
2424 4479 3.945434 GGCATGGTGAGCGCGATG 61.945 66.667 12.10 4.25 0.00 3.84
2469 4524 2.718731 TTTTTGCACGCAGACCGG 59.281 55.556 0.00 0.00 42.52 5.28
2485 4540 3.305199 CGAGAGTCCCGTTTAGTCAGTTT 60.305 47.826 0.00 0.00 0.00 2.66
2511 4566 5.726980 TGGGCGTTTTACTAGTTTCTCTA 57.273 39.130 0.00 0.00 0.00 2.43
2512 4567 4.612264 TGGGCGTTTTACTAGTTTCTCT 57.388 40.909 0.00 0.00 0.00 3.10
2513 4568 5.005107 CGTATGGGCGTTTTACTAGTTTCTC 59.995 44.000 0.00 0.00 0.00 2.87
2514 4569 4.866486 CGTATGGGCGTTTTACTAGTTTCT 59.134 41.667 0.00 0.00 0.00 2.52
2515 4570 4.627035 ACGTATGGGCGTTTTACTAGTTTC 59.373 41.667 0.00 0.00 43.04 2.78
2516 4571 4.568956 ACGTATGGGCGTTTTACTAGTTT 58.431 39.130 0.00 0.00 43.04 2.66
2517 4572 4.192429 ACGTATGGGCGTTTTACTAGTT 57.808 40.909 0.00 0.00 43.04 2.24
2518 4573 3.874392 ACGTATGGGCGTTTTACTAGT 57.126 42.857 0.00 0.00 43.04 2.57
2528 4583 3.305623 CGTAGCAACGTATGGGCG 58.694 61.111 0.00 0.00 44.21 6.13
2540 4595 0.588252 CATGCATTGTAGCCCGTAGC 59.412 55.000 0.00 0.00 44.25 3.58
2541 4596 0.588252 GCATGCATTGTAGCCCGTAG 59.412 55.000 14.21 0.00 0.00 3.51
2542 4597 0.107459 TGCATGCATTGTAGCCCGTA 60.107 50.000 18.46 0.00 0.00 4.02
2543 4598 0.752743 ATGCATGCATTGTAGCCCGT 60.753 50.000 27.46 1.89 31.82 5.28
2544 4599 1.237533 TATGCATGCATTGTAGCCCG 58.762 50.000 36.23 0.00 37.82 6.13
2545 4600 5.389859 TTTATATGCATGCATTGTAGCCC 57.610 39.130 36.23 0.00 37.82 5.19
2546 4601 6.623486 TCATTTATATGCATGCATTGTAGCC 58.377 36.000 36.23 0.00 37.82 3.93
2547 4602 8.697846 ATTCATTTATATGCATGCATTGTAGC 57.302 30.769 36.23 0.00 37.82 3.58
2548 4603 9.849166 TGATTCATTTATATGCATGCATTGTAG 57.151 29.630 36.23 20.94 37.82 2.74
2550 4605 9.549078 TTTGATTCATTTATATGCATGCATTGT 57.451 25.926 36.23 26.14 37.82 2.71
2551 4606 9.805966 GTTTGATTCATTTATATGCATGCATTG 57.194 29.630 36.23 26.72 37.82 2.82
2552 4607 9.549078 TGTTTGATTCATTTATATGCATGCATT 57.451 25.926 36.23 24.64 37.82 3.56
2553 4608 9.549078 TTGTTTGATTCATTTATATGCATGCAT 57.451 25.926 33.92 33.92 40.19 3.96
2554 4609 8.943909 TTGTTTGATTCATTTATATGCATGCA 57.056 26.923 25.04 25.04 0.00 3.96
2571 4626 9.582431 CAGCTTTGATCTTATCATTTGTTTGAT 57.418 29.630 0.00 0.00 39.39 2.57
2572 4627 8.030692 CCAGCTTTGATCTTATCATTTGTTTGA 58.969 33.333 0.00 0.00 39.39 2.69
2573 4628 8.030692 TCCAGCTTTGATCTTATCATTTGTTTG 58.969 33.333 0.00 0.00 39.39 2.93
2574 4629 8.125978 TCCAGCTTTGATCTTATCATTTGTTT 57.874 30.769 0.00 0.00 39.39 2.83
2575 4630 7.707624 TCCAGCTTTGATCTTATCATTTGTT 57.292 32.000 0.00 0.00 39.39 2.83
2576 4631 7.893124 ATCCAGCTTTGATCTTATCATTTGT 57.107 32.000 0.00 0.00 39.39 2.83
2579 4634 9.638176 ACTAAATCCAGCTTTGATCTTATCATT 57.362 29.630 0.00 0.00 39.39 2.57
2584 4639 9.905713 AACATACTAAATCCAGCTTTGATCTTA 57.094 29.630 0.00 0.00 0.00 2.10
2585 4640 8.814038 AACATACTAAATCCAGCTTTGATCTT 57.186 30.769 0.00 0.00 0.00 2.40
2586 4641 9.553064 CTAACATACTAAATCCAGCTTTGATCT 57.447 33.333 0.00 0.00 0.00 2.75
2587 4642 8.778358 CCTAACATACTAAATCCAGCTTTGATC 58.222 37.037 0.00 0.00 0.00 2.92
2588 4643 8.275040 ACCTAACATACTAAATCCAGCTTTGAT 58.725 33.333 0.00 0.00 0.00 2.57
2589 4644 7.552687 CACCTAACATACTAAATCCAGCTTTGA 59.447 37.037 0.00 0.00 0.00 2.69
2590 4645 7.679638 GCACCTAACATACTAAATCCAGCTTTG 60.680 40.741 0.00 0.00 0.00 2.77
2591 4646 6.318900 GCACCTAACATACTAAATCCAGCTTT 59.681 38.462 0.00 0.00 0.00 3.51
2592 4647 5.823045 GCACCTAACATACTAAATCCAGCTT 59.177 40.000 0.00 0.00 0.00 3.74
2593 4648 5.104527 TGCACCTAACATACTAAATCCAGCT 60.105 40.000 0.00 0.00 0.00 4.24
2594 4649 5.007724 GTGCACCTAACATACTAAATCCAGC 59.992 44.000 5.22 0.00 0.00 4.85
2595 4650 5.234329 CGTGCACCTAACATACTAAATCCAG 59.766 44.000 12.15 0.00 0.00 3.86
2596 4651 5.113383 CGTGCACCTAACATACTAAATCCA 58.887 41.667 12.15 0.00 0.00 3.41
2597 4652 5.006358 CACGTGCACCTAACATACTAAATCC 59.994 44.000 12.15 0.00 0.00 3.01
2598 4653 5.501897 GCACGTGCACCTAACATACTAAATC 60.502 44.000 34.52 0.00 41.59 2.17
2599 4654 4.331717 GCACGTGCACCTAACATACTAAAT 59.668 41.667 34.52 0.00 41.59 1.40
2600 4655 3.680937 GCACGTGCACCTAACATACTAAA 59.319 43.478 34.52 0.00 41.59 1.85
2601 4656 3.255725 GCACGTGCACCTAACATACTAA 58.744 45.455 34.52 0.00 41.59 2.24
2602 4657 2.883574 GCACGTGCACCTAACATACTA 58.116 47.619 34.52 0.00 41.59 1.82
2603 4658 1.722011 GCACGTGCACCTAACATACT 58.278 50.000 34.52 0.00 41.59 2.12
2615 4670 1.655099 CTTTTATGGCATTGCACGTGC 59.345 47.619 33.11 33.11 41.78 5.34
2616 4671 3.214697 TCTTTTATGGCATTGCACGTG 57.785 42.857 12.28 12.28 0.00 4.49
2617 4672 3.487376 CGATCTTTTATGGCATTGCACGT 60.487 43.478 4.78 4.22 0.00 4.49
2618 4673 3.038017 CGATCTTTTATGGCATTGCACG 58.962 45.455 4.78 0.00 0.00 5.34
2619 4674 2.791004 GCGATCTTTTATGGCATTGCAC 59.209 45.455 4.78 0.57 0.00 4.57
2620 4675 2.223782 GGCGATCTTTTATGGCATTGCA 60.224 45.455 4.78 0.00 0.00 4.08
2621 4676 2.397549 GGCGATCTTTTATGGCATTGC 58.602 47.619 4.78 0.00 0.00 3.56
2622 4677 2.605338 CGGGCGATCTTTTATGGCATTG 60.605 50.000 4.78 0.00 0.00 2.82
2623 4678 1.608590 CGGGCGATCTTTTATGGCATT 59.391 47.619 4.78 0.00 0.00 3.56
2624 4679 1.202758 TCGGGCGATCTTTTATGGCAT 60.203 47.619 4.88 4.88 0.00 4.40
2625 4680 0.179234 TCGGGCGATCTTTTATGGCA 59.821 50.000 0.00 0.00 0.00 4.92
2626 4681 1.264288 CTTCGGGCGATCTTTTATGGC 59.736 52.381 0.00 0.00 0.00 4.40
2627 4682 2.544267 GTCTTCGGGCGATCTTTTATGG 59.456 50.000 0.00 0.00 0.00 2.74
2628 4683 2.544267 GGTCTTCGGGCGATCTTTTATG 59.456 50.000 0.00 0.00 0.00 1.90
2629 4684 2.484947 GGGTCTTCGGGCGATCTTTTAT 60.485 50.000 0.00 0.00 0.00 1.40
2630 4685 1.134610 GGGTCTTCGGGCGATCTTTTA 60.135 52.381 0.00 0.00 0.00 1.52
2631 4686 0.392595 GGGTCTTCGGGCGATCTTTT 60.393 55.000 0.00 0.00 0.00 2.27
2632 4687 1.221021 GGGTCTTCGGGCGATCTTT 59.779 57.895 0.00 0.00 0.00 2.52
2633 4688 1.265454 AAGGGTCTTCGGGCGATCTT 61.265 55.000 0.00 0.00 0.00 2.40
2634 4689 1.686110 AAGGGTCTTCGGGCGATCT 60.686 57.895 0.00 0.00 0.00 2.75
2635 4690 1.521681 CAAGGGTCTTCGGGCGATC 60.522 63.158 0.00 0.00 0.00 3.69
2636 4691 2.240162 GACAAGGGTCTTCGGGCGAT 62.240 60.000 0.00 0.00 40.99 4.58
2637 4692 2.920912 ACAAGGGTCTTCGGGCGA 60.921 61.111 0.00 0.00 0.00 5.54
2638 4693 2.434359 GACAAGGGTCTTCGGGCG 60.434 66.667 0.00 0.00 40.99 6.13
2646 4701 2.230660 CACCTTCCAAAGACAAGGGTC 58.769 52.381 2.88 0.00 43.25 4.46
2647 4702 2.364972 CACCTTCCAAAGACAAGGGT 57.635 50.000 2.88 0.00 43.25 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.