Multiple sequence alignment - TraesCS7A01G484800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G484800 chr7A 100.000 5265 0 0 1 5265 675586101 675591365 0.000000e+00 9723.0
1 TraesCS7A01G484800 chr7D 93.786 4313 191 35 1 4282 585555532 585559798 0.000000e+00 6408.0
2 TraesCS7A01G484800 chr7D 83.434 332 27 15 4958 5265 575152655 575152982 3.100000e-72 283.0
3 TraesCS7A01G484800 chr7D 96.471 85 3 0 4828 4912 585559788 585559872 1.980000e-29 141.0
4 TraesCS7A01G484800 chr7B 94.311 2496 111 17 924 3391 654915877 654918369 0.000000e+00 3794.0
5 TraesCS7A01G484800 chr7B 89.867 1500 112 20 3365 4839 654921665 654923149 0.000000e+00 1892.0
6 TraesCS7A01G484800 chr7B 86.553 937 73 25 1 917 654914862 654915765 0.000000e+00 983.0
7 TraesCS7A01G484800 chr7B 100.000 81 0 0 4828 4908 654923165 654923245 3.280000e-32 150.0
8 TraesCS7A01G484800 chr7B 100.000 51 0 0 4789 4839 654923158 654923208 1.560000e-15 95.3
9 TraesCS7A01G484800 chr7B 100.000 34 0 0 4859 4892 654923137 654923170 4.400000e-06 63.9
10 TraesCS7A01G484800 chr7B 100.000 31 0 0 1027 1057 654915930 654915960 2.050000e-04 58.4
11 TraesCS7A01G484800 chr7B 100.000 28 0 0 513 540 681769301 681769328 1.000000e-02 52.8
12 TraesCS7A01G484800 chr2A 76.466 1364 250 54 2839 4172 720060899 720059577 0.000000e+00 675.0
13 TraesCS7A01G484800 chr2A 74.829 1466 298 45 2830 4268 720315317 720313896 9.760000e-167 597.0
14 TraesCS7A01G484800 chr2A 75.000 1316 249 59 2867 4165 721009381 721008129 7.760000e-148 534.0
15 TraesCS7A01G484800 chr2A 94.667 300 12 4 4968 5265 430605897 430606194 3.710000e-126 462.0
16 TraesCS7A01G484800 chr2A 90.536 317 10 3 4969 5265 689755477 689755793 8.210000e-108 401.0
17 TraesCS7A01G484800 chr2A 93.033 244 13 4 5025 5265 570187324 570187566 2.330000e-93 353.0
18 TraesCS7A01G484800 chr2A 76.401 589 129 8 1007 1593 720062674 720062094 5.120000e-80 309.0
19 TraesCS7A01G484800 chr2A 77.128 188 38 5 2786 2970 750556506 750556691 2.590000e-18 104.0
20 TraesCS7A01G484800 chr2A 78.431 102 19 3 2867 2966 52762962 52762862 4.400000e-06 63.9
21 TraesCS7A01G484800 chr2A 100.000 28 0 0 519 546 380045083 380045110 1.000000e-02 52.8
22 TraesCS7A01G484800 chr2A 100.000 28 0 0 513 540 473978570 473978597 1.000000e-02 52.8
23 TraesCS7A01G484800 chr2B 75.884 1385 259 56 2830 4181 707415689 707414347 5.750000e-179 638.0
24 TraesCS7A01G484800 chr2B 75.707 1379 266 50 2830 4181 707671816 707670480 1.240000e-175 627.0
25 TraesCS7A01G484800 chr2B 75.715 1223 253 34 3054 4268 707462899 707461713 1.640000e-159 573.0
26 TraesCS7A01G484800 chr2B 74.544 1096 228 37 3057 4132 756622305 756623369 1.050000e-116 431.0
27 TraesCS7A01G484800 chr2B 74.359 1092 216 50 3059 4132 707240290 707239245 1.770000e-109 407.0
28 TraesCS7A01G484800 chr2B 82.018 228 38 2 3059 3283 706731267 706731040 1.940000e-44 191.0
29 TraesCS7A01G484800 chr2B 75.779 289 61 8 1020 1303 707956666 707956382 2.560000e-28 137.0
30 TraesCS7A01G484800 chr2B 78.075 187 38 3 2786 2970 758800445 758800260 1.200000e-21 115.0
31 TraesCS7A01G484800 chr2D 77.506 818 153 17 2830 3623 585894548 585893738 3.710000e-126 462.0
32 TraesCS7A01G484800 chr2D 90.881 318 9 3 4968 5265 10751664 10751981 4.910000e-110 409.0
33 TraesCS7A01G484800 chr2D 78.535 587 106 17 3057 3626 619568323 619568906 8.330000e-98 368.0
34 TraesCS7A01G484800 chr2D 75.030 829 166 31 3058 3879 619702977 619703771 3.900000e-91 346.0
35 TraesCS7A01G484800 chr2D 76.068 585 129 9 1016 1597 586151542 586152118 1.430000e-75 294.0
36 TraesCS7A01G484800 chr2D 76.731 520 96 17 3364 3880 585687028 585686531 3.130000e-67 267.0
37 TraesCS7A01G484800 chr2D 78.022 182 36 3 2786 2965 619404572 619404751 1.550000e-20 111.0
38 TraesCS7A01G484800 chr5A 94.000 300 14 4 4968 5265 29639788 29639491 8.040000e-123 451.0
39 TraesCS7A01G484800 chr5A 88.679 318 15 4 4968 5265 601396189 601396505 8.330000e-98 368.0
40 TraesCS7A01G484800 chrUn 88.365 318 16 5 4968 5265 17421945 17421629 3.880000e-96 363.0
41 TraesCS7A01G484800 chrUn 88.050 318 17 4 4968 5265 435807640 435807324 1.800000e-94 357.0
42 TraesCS7A01G484800 chr4D 88.158 304 22 12 4967 5265 82736553 82736847 3.020000e-92 350.0
43 TraesCS7A01G484800 chr6A 75.814 430 93 9 1033 1455 593442506 593442081 1.920000e-49 207.0
44 TraesCS7A01G484800 chr3B 100.000 69 0 0 5197 5265 795069940 795070008 1.540000e-25 128.0
45 TraesCS7A01G484800 chr3B 100.000 28 0 0 519 546 732737132 732737159 1.000000e-02 52.8
46 TraesCS7A01G484800 chr6D 98.551 69 1 0 5197 5265 181695990 181695922 7.160000e-24 122.0
47 TraesCS7A01G484800 chr5B 88.119 101 8 4 5167 5265 277264024 277264122 3.330000e-22 117.0
48 TraesCS7A01G484800 chr1A 97.101 69 2 0 5197 5265 570195013 570194945 3.330000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G484800 chr7A 675586101 675591365 5264 False 9723.0 9723 100.000000 1 5265 1 chr7A.!!$F1 5264
1 TraesCS7A01G484800 chr7D 585555532 585559872 4340 False 3274.5 6408 95.128500 1 4912 2 chr7D.!!$F2 4911
2 TraesCS7A01G484800 chr7B 654914862 654918369 3507 False 1611.8 3794 93.621333 1 3391 3 chr7B.!!$F2 3390
3 TraesCS7A01G484800 chr7B 654921665 654923245 1580 False 550.3 1892 97.466750 3365 4908 4 chr7B.!!$F3 1543
4 TraesCS7A01G484800 chr2A 720313896 720315317 1421 True 597.0 597 74.829000 2830 4268 1 chr2A.!!$R2 1438
5 TraesCS7A01G484800 chr2A 721008129 721009381 1252 True 534.0 534 75.000000 2867 4165 1 chr2A.!!$R3 1298
6 TraesCS7A01G484800 chr2A 720059577 720062674 3097 True 492.0 675 76.433500 1007 4172 2 chr2A.!!$R4 3165
7 TraesCS7A01G484800 chr2B 707414347 707415689 1342 True 638.0 638 75.884000 2830 4181 1 chr2B.!!$R3 1351
8 TraesCS7A01G484800 chr2B 707670480 707671816 1336 True 627.0 627 75.707000 2830 4181 1 chr2B.!!$R5 1351
9 TraesCS7A01G484800 chr2B 707461713 707462899 1186 True 573.0 573 75.715000 3054 4268 1 chr2B.!!$R4 1214
10 TraesCS7A01G484800 chr2B 756622305 756623369 1064 False 431.0 431 74.544000 3057 4132 1 chr2B.!!$F1 1075
11 TraesCS7A01G484800 chr2B 707239245 707240290 1045 True 407.0 407 74.359000 3059 4132 1 chr2B.!!$R2 1073
12 TraesCS7A01G484800 chr2D 585893738 585894548 810 True 462.0 462 77.506000 2830 3623 1 chr2D.!!$R2 793
13 TraesCS7A01G484800 chr2D 619568323 619568906 583 False 368.0 368 78.535000 3057 3626 1 chr2D.!!$F4 569
14 TraesCS7A01G484800 chr2D 619702977 619703771 794 False 346.0 346 75.030000 3058 3879 1 chr2D.!!$F5 821
15 TraesCS7A01G484800 chr2D 586151542 586152118 576 False 294.0 294 76.068000 1016 1597 1 chr2D.!!$F2 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
787 817 0.102120 TGCCGCTTGTTGAAACTTGG 59.898 50.000 0.00 0.00 0.00 3.61 F
1113 1260 0.112606 ACACTCTCGTCTCCAAGGGA 59.887 55.000 0.00 0.00 0.00 4.20 F
1377 1524 0.244721 CTGCAGTGATCCTCGACACA 59.755 55.000 5.25 0.00 39.18 3.72 F
1858 2005 0.244994 CACTGCCTGCGAGTTCTACT 59.755 55.000 0.00 0.00 0.00 2.57 F
2256 2403 1.415659 GCTGACTCTCCAGGTATGCAT 59.584 52.381 3.79 3.79 34.82 3.96 F
2802 2988 1.535462 AGTGGCGAAACAAGGAAATCG 59.465 47.619 0.00 0.00 38.28 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1851 1998 0.889306 AGCCACACGAGGAGTAGAAC 59.111 55.000 0.00 0.00 0.00 3.01 R
2256 2403 1.617322 ATAATGCTAGGGCTCGACGA 58.383 50.000 0.00 0.00 39.59 4.20 R
2297 2444 2.942376 CCTGTCAAGTGCAGTTACACAA 59.058 45.455 6.43 0.00 43.23 3.33 R
2827 3013 5.395682 TCCAATTTCATTTGAAGAGCTGG 57.604 39.130 0.00 0.87 35.21 4.85 R
3970 4239 1.287425 CGTTTCCGTCTTCCCATAGC 58.713 55.000 0.00 0.00 0.00 2.97 R
4411 4684 0.103937 GAGTTAGGATGCTGCTCGCT 59.896 55.000 0.00 0.00 40.11 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 63 9.950680 TTGAGATTTCTTTCATTGACTGTTTAC 57.049 29.630 0.00 0.00 0.00 2.01
102 104 5.181056 TCATTCACGCATGTGTTCACTTTAT 59.819 36.000 9.73 0.00 46.49 1.40
145 150 5.141182 TGAATTTGGTGGTTTAGTTGCCTA 58.859 37.500 0.00 0.00 0.00 3.93
226 238 9.881773 AATTAATTAAGGAGGCCATAATTCTCA 57.118 29.630 5.01 0.12 38.09 3.27
267 283 1.003331 CGCCTGAAACAGCAACGTAAA 60.003 47.619 0.00 0.00 0.00 2.01
284 300 7.380333 GCAACGTAAAAATAGCTAAAACAAGGT 59.620 33.333 0.00 0.00 0.00 3.50
341 359 6.723298 ATATGGATCGACTGAGAAAGAAGT 57.277 37.500 0.00 0.00 0.00 3.01
342 360 7.825331 ATATGGATCGACTGAGAAAGAAGTA 57.175 36.000 0.00 0.00 0.00 2.24
343 361 5.977489 TGGATCGACTGAGAAAGAAGTAA 57.023 39.130 0.00 0.00 0.00 2.24
344 362 5.955488 TGGATCGACTGAGAAAGAAGTAAG 58.045 41.667 0.00 0.00 0.00 2.34
346 364 6.015350 TGGATCGACTGAGAAAGAAGTAAGTT 60.015 38.462 0.00 0.00 0.00 2.66
347 365 6.528774 GGATCGACTGAGAAAGAAGTAAGTTC 59.471 42.308 0.00 0.00 35.08 3.01
349 367 7.741027 TCGACTGAGAAAGAAGTAAGTTCTA 57.259 36.000 0.00 0.00 45.44 2.10
350 368 8.338072 TCGACTGAGAAAGAAGTAAGTTCTAT 57.662 34.615 0.00 0.00 45.44 1.98
351 369 8.452534 TCGACTGAGAAAGAAGTAAGTTCTATC 58.547 37.037 0.00 0.00 45.44 2.08
352 370 7.427030 CGACTGAGAAAGAAGTAAGTTCTATCG 59.573 40.741 0.00 0.00 45.44 2.92
353 371 8.338072 ACTGAGAAAGAAGTAAGTTCTATCGA 57.662 34.615 0.00 0.00 45.44 3.59
354 372 8.238631 ACTGAGAAAGAAGTAAGTTCTATCGAC 58.761 37.037 0.00 0.00 45.44 4.20
355 373 8.338072 TGAGAAAGAAGTAAGTTCTATCGACT 57.662 34.615 0.00 0.00 45.44 4.18
356 374 8.237949 TGAGAAAGAAGTAAGTTCTATCGACTG 58.762 37.037 0.00 0.00 45.44 3.51
357 375 8.338072 AGAAAGAAGTAAGTTCTATCGACTGA 57.662 34.615 0.00 0.00 45.44 3.41
358 376 8.455682 AGAAAGAAGTAAGTTCTATCGACTGAG 58.544 37.037 0.00 0.00 45.44 3.35
359 377 7.925043 AAGAAGTAAGTTCTATCGACTGAGA 57.075 36.000 0.00 0.00 45.44 3.27
360 378 7.925043 AGAAGTAAGTTCTATCGACTGAGAA 57.075 36.000 0.00 0.00 44.26 2.87
361 379 8.338072 AGAAGTAAGTTCTATCGACTGAGAAA 57.662 34.615 7.60 0.00 44.26 2.52
362 380 8.455682 AGAAGTAAGTTCTATCGACTGAGAAAG 58.544 37.037 7.60 0.00 44.26 2.62
363 381 7.925043 AGTAAGTTCTATCGACTGAGAAAGA 57.075 36.000 7.60 0.00 33.59 2.52
364 382 8.338072 AGTAAGTTCTATCGACTGAGAAAGAA 57.662 34.615 7.60 0.00 33.59 2.52
365 383 8.455682 AGTAAGTTCTATCGACTGAGAAAGAAG 58.544 37.037 7.60 0.00 33.59 2.85
391 409 4.067896 GTTCTCAAGAAGCAGGATCAACA 58.932 43.478 0.00 0.00 34.27 3.33
398 416 8.442632 TCAAGAAGCAGGATCAACATTAATAG 57.557 34.615 0.00 0.00 0.00 1.73
413 431 9.061610 CAACATTAATAGAAAAACTAACGGCTG 57.938 33.333 0.00 0.00 34.56 4.85
519 548 1.679680 GGTCAGACCATCCATGCATTG 59.320 52.381 15.43 0.00 38.42 2.82
520 549 2.372264 GTCAGACCATCCATGCATTGT 58.628 47.619 0.00 0.00 0.00 2.71
521 550 3.544684 GTCAGACCATCCATGCATTGTA 58.455 45.455 0.00 0.00 0.00 2.41
522 551 3.313526 GTCAGACCATCCATGCATTGTAC 59.686 47.826 0.00 0.00 0.00 2.90
523 552 3.200605 TCAGACCATCCATGCATTGTACT 59.799 43.478 0.00 0.00 0.00 2.73
524 553 3.562973 CAGACCATCCATGCATTGTACTC 59.437 47.826 0.00 0.00 0.00 2.59
525 554 2.880890 GACCATCCATGCATTGTACTCC 59.119 50.000 0.00 0.00 0.00 3.85
526 555 2.233271 CCATCCATGCATTGTACTCCC 58.767 52.381 0.00 0.00 0.00 4.30
527 556 2.158564 CCATCCATGCATTGTACTCCCT 60.159 50.000 0.00 0.00 0.00 4.20
528 557 3.144506 CATCCATGCATTGTACTCCCTC 58.855 50.000 0.00 0.00 0.00 4.30
529 558 1.490490 TCCATGCATTGTACTCCCTCC 59.510 52.381 0.00 0.00 0.00 4.30
540 569 2.491675 ACTCCCTCCGTTCCAAAATC 57.508 50.000 0.00 0.00 0.00 2.17
551 580 7.094549 CCTCCGTTCCAAAATCAGTGTATTTAA 60.095 37.037 0.00 0.00 0.00 1.52
589 618 5.734311 GCTAAATCAGCGACGCTTATTTTA 58.266 37.500 34.15 26.24 38.72 1.52
729 759 0.319900 GACAGCGAGGACTTGAAGCA 60.320 55.000 0.00 0.00 0.00 3.91
736 766 2.543012 CGAGGACTTGAAGCATAGCATG 59.457 50.000 0.00 0.00 0.00 4.06
741 771 2.025981 ACTTGAAGCATAGCATGGACCA 60.026 45.455 0.00 0.00 0.00 4.02
748 778 2.547642 GCATAGCATGGACCAGAGACTC 60.548 54.545 0.00 0.00 0.00 3.36
753 783 1.905215 CATGGACCAGAGACTCCAAGT 59.095 52.381 0.00 0.00 40.05 3.16
770 800 3.304928 CCAAGTCATGACCAAGTTTCTGC 60.305 47.826 22.21 0.00 0.00 4.26
787 817 0.102120 TGCCGCTTGTTGAAACTTGG 59.898 50.000 0.00 0.00 0.00 3.61
802 832 9.643693 GTTGAAACTTGGAAATCATGTCATAAT 57.356 29.630 0.00 0.00 33.32 1.28
921 1058 3.097614 ACCGTGCCTAGTCAGTCTTATT 58.902 45.455 0.00 0.00 0.00 1.40
976 1115 2.945008 CACACAAGCAGACCAAGAAGAA 59.055 45.455 0.00 0.00 0.00 2.52
987 1126 6.234177 CAGACCAAGAAGAAACTATCCTTGT 58.766 40.000 0.00 0.00 34.14 3.16
1084 1231 3.011818 CTCACATATGCAAAGCCACTCA 58.988 45.455 1.58 0.00 0.00 3.41
1086 1233 2.488937 CACATATGCAAAGCCACTCACA 59.511 45.455 1.58 0.00 0.00 3.58
1113 1260 0.112606 ACACTCTCGTCTCCAAGGGA 59.887 55.000 0.00 0.00 0.00 4.20
1160 1307 0.953960 CCAACCAGCTCCAACCGTAC 60.954 60.000 0.00 0.00 0.00 3.67
1203 1350 1.753649 CACAACATCCCCAAACACACA 59.246 47.619 0.00 0.00 0.00 3.72
1281 1428 1.171308 CCATCAGCAACACTTCTGGG 58.829 55.000 0.00 0.00 0.00 4.45
1377 1524 0.244721 CTGCAGTGATCCTCGACACA 59.755 55.000 5.25 0.00 39.18 3.72
1380 1527 0.459237 CAGTGATCCTCGACACAGGC 60.459 60.000 6.66 0.00 39.18 4.85
1401 1548 1.141881 CTTGGTCCTCCGGTCATCG 59.858 63.158 0.00 0.00 36.30 3.84
1412 1559 1.080093 GGTCATCGAACGGCACAGA 60.080 57.895 0.00 0.00 0.00 3.41
1485 1632 6.810182 TGAGGTTCGTGCTAAGTTATAAAGAC 59.190 38.462 0.00 0.00 0.00 3.01
1572 1719 1.408969 GCCTTGACCCCAGTTCAAAA 58.591 50.000 0.00 0.00 0.00 2.44
1668 1815 1.209128 GACCATATCGGAGCAACACG 58.791 55.000 0.00 0.00 38.63 4.49
1680 1827 0.674895 GCAACACGAGCTCCATCCTT 60.675 55.000 8.47 0.00 0.00 3.36
1720 1867 4.038522 ACATAGGAGACGAGTACTACGCTA 59.961 45.833 12.63 7.84 0.00 4.26
1851 1998 4.767255 GTCCCCACTGCCTGCGAG 62.767 72.222 0.00 0.00 0.00 5.03
1858 2005 0.244994 CACTGCCTGCGAGTTCTACT 59.755 55.000 0.00 0.00 0.00 2.57
1940 2087 2.107366 TGATGGGTACGAGCTTGATGA 58.893 47.619 8.31 0.00 0.00 2.92
2221 2368 2.161855 TCAGCAACAATGGCGAGAATT 58.838 42.857 0.00 0.00 36.08 2.17
2256 2403 1.415659 GCTGACTCTCCAGGTATGCAT 59.584 52.381 3.79 3.79 34.82 3.96
2297 2444 4.411256 TTTCTTCGTGTCCTTAAGGTGT 57.589 40.909 21.04 0.00 36.34 4.16
2529 2706 5.498393 TCACTCGGTTAGTAGAGATCAGTT 58.502 41.667 0.00 0.00 35.76 3.16
2545 2722 9.290988 AGAGATCAGTTATGGTACTATGTAGTG 57.709 37.037 1.31 3.78 37.10 2.74
2732 2914 7.437713 AACATGAGTCCCTGATTACAGAATA 57.562 36.000 0.00 0.00 46.03 1.75
2802 2988 1.535462 AGTGGCGAAACAAGGAAATCG 59.465 47.619 0.00 0.00 38.28 3.34
2827 3013 7.848051 CGAACAAAGACAGATGTTAAGATATGC 59.152 37.037 7.11 1.35 39.73 3.14
3044 3250 8.186821 GCTCACTTTCAGCATCTTACATTTTAT 58.813 33.333 0.00 0.00 36.82 1.40
3517 3740 8.519492 TCTCAAAGCAAGTAACATTTTATTGC 57.481 30.769 0.11 0.11 45.05 3.56
3646 3895 4.881157 AAATGTCCTAGCCAACCCTTAT 57.119 40.909 0.00 0.00 0.00 1.73
3700 3950 3.213506 TGCTCACACTGTGCACTTATTT 58.786 40.909 19.41 0.00 41.27 1.40
3928 4196 9.013229 TCATTGGTCCAAGCAATATAATGATAC 57.987 33.333 10.72 0.00 43.63 2.24
3970 4239 1.751927 GCTGGTTCAGGCATGGAGG 60.752 63.158 0.00 0.00 31.21 4.30
3988 4257 1.209747 AGGCTATGGGAAGACGGAAAC 59.790 52.381 0.00 0.00 0.00 2.78
4009 4278 1.462616 CCGCAGAATTGGTGGAATCA 58.537 50.000 0.92 0.00 38.18 2.57
4012 4281 2.947652 CGCAGAATTGGTGGAATCATCT 59.052 45.455 0.00 0.00 0.00 2.90
4199 4468 5.320549 TCTAGGTAATTGTGAAGTCGGAC 57.679 43.478 0.00 0.00 0.00 4.79
4202 4471 4.315803 AGGTAATTGTGAAGTCGGACAAG 58.684 43.478 11.27 0.00 35.60 3.16
4203 4472 3.120304 GGTAATTGTGAAGTCGGACAAGC 60.120 47.826 11.27 0.00 35.60 4.01
4222 4494 3.476552 AGCGACAGAACAGATGGAAAAA 58.523 40.909 0.00 0.00 0.00 1.94
4320 4592 5.078411 ACTGTGATCTATTCTGTGTGGAC 57.922 43.478 0.00 0.00 0.00 4.02
4353 4626 6.882140 TGTCGGTTTGGACATCAGTATTATTT 59.118 34.615 0.00 0.00 41.76 1.40
4356 4629 7.066525 TCGGTTTGGACATCAGTATTATTTTCC 59.933 37.037 0.00 0.00 0.00 3.13
4357 4630 7.067008 CGGTTTGGACATCAGTATTATTTTCCT 59.933 37.037 0.00 0.00 0.00 3.36
4364 4637 9.884465 GACATCAGTATTATTTTCCTTATGTGC 57.116 33.333 0.00 0.00 0.00 4.57
4365 4638 8.850156 ACATCAGTATTATTTTCCTTATGTGCC 58.150 33.333 0.00 0.00 0.00 5.01
4371 4644 0.885196 TTTCCTTATGTGCCGGTTGC 59.115 50.000 1.90 0.00 41.77 4.17
4394 4667 8.229253 TGCTCTTATCTTTGATGTGCAAATAT 57.771 30.769 0.00 0.00 44.90 1.28
4411 4684 3.565764 ATATGCCTGCAAGAAGCTACA 57.434 42.857 0.00 0.00 45.94 2.74
4419 4692 0.997932 CAAGAAGCTACAGCGAGCAG 59.002 55.000 10.35 0.00 45.43 4.24
4433 4706 0.833287 GAGCAGCATCCTAACTCCCA 59.167 55.000 0.00 0.00 0.00 4.37
4448 4721 5.536497 AACTCCCAAGTCCTAAATCCAAT 57.464 39.130 0.00 0.00 33.48 3.16
4450 4723 4.292306 ACTCCCAAGTCCTAAATCCAATGT 59.708 41.667 0.00 0.00 0.00 2.71
4451 4724 5.222337 ACTCCCAAGTCCTAAATCCAATGTT 60.222 40.000 0.00 0.00 0.00 2.71
4467 4740 1.745232 TGTTGCTGGAGTTTGTCGTT 58.255 45.000 0.00 0.00 0.00 3.85
4472 4745 3.325870 TGCTGGAGTTTGTCGTTAGATG 58.674 45.455 0.00 0.00 0.00 2.90
4477 4750 3.185797 GGAGTTTGTCGTTAGATGCGTTT 59.814 43.478 0.00 0.00 0.00 3.60
4480 4753 5.224888 AGTTTGTCGTTAGATGCGTTTAGA 58.775 37.500 0.00 0.00 0.00 2.10
4495 4768 5.982516 TGCGTTTAGAAGCAAATCAAACAAT 59.017 32.000 0.00 0.00 40.78 2.71
4496 4769 6.478344 TGCGTTTAGAAGCAAATCAAACAATT 59.522 30.769 0.00 0.00 40.78 2.32
4497 4770 7.003648 GCGTTTAGAAGCAAATCAAACAATTC 58.996 34.615 0.00 0.00 0.00 2.17
4502 4790 1.731709 GCAAATCAAACAATTCGGGCC 59.268 47.619 0.00 0.00 0.00 5.80
4522 4810 1.524621 CTTCAGTAGGCGGCATGGG 60.525 63.158 13.08 0.00 0.00 4.00
4523 4811 2.257409 CTTCAGTAGGCGGCATGGGT 62.257 60.000 13.08 0.00 0.00 4.51
4527 4815 3.006133 TAGGCGGCATGGGTGACA 61.006 61.111 13.08 0.00 30.50 3.58
4532 4820 2.273449 GGCATGGGTGACAGGAGG 59.727 66.667 0.00 0.00 31.88 4.30
4533 4821 2.300967 GGCATGGGTGACAGGAGGA 61.301 63.158 0.00 0.00 31.88 3.71
4534 4822 1.222936 GCATGGGTGACAGGAGGAG 59.777 63.158 0.00 0.00 31.04 3.69
4535 4823 1.910722 CATGGGTGACAGGAGGAGG 59.089 63.158 0.00 0.00 31.04 4.30
4536 4824 1.997874 ATGGGTGACAGGAGGAGGC 60.998 63.158 0.00 0.00 0.00 4.70
4537 4825 3.403558 GGGTGACAGGAGGAGGCC 61.404 72.222 0.00 0.00 0.00 5.19
4538 4826 3.775654 GGTGACAGGAGGAGGCCG 61.776 72.222 0.00 0.00 0.00 6.13
4539 4827 2.997897 GTGACAGGAGGAGGCCGT 60.998 66.667 0.00 0.00 0.00 5.68
4540 4828 2.680352 TGACAGGAGGAGGCCGTC 60.680 66.667 0.00 0.00 34.38 4.79
4541 4829 2.680352 GACAGGAGGAGGCCGTCA 60.680 66.667 0.00 0.00 34.14 4.35
4542 4830 2.039624 ACAGGAGGAGGCCGTCAT 59.960 61.111 0.00 0.00 0.00 3.06
4543 4831 2.303549 GACAGGAGGAGGCCGTCATG 62.304 65.000 13.72 13.72 42.52 3.07
4544 4832 2.765807 AGGAGGAGGCCGTCATGG 60.766 66.667 0.00 0.00 42.50 3.66
4589 4877 2.979676 CGGAAGTGCAGCTTGCCA 60.980 61.111 12.43 0.00 44.23 4.92
4612 4900 1.671379 GTTTCCCTGTCGCCCTGTC 60.671 63.158 0.00 0.00 0.00 3.51
4623 4911 1.000506 TCGCCCTGTCAAGTCTTACAC 59.999 52.381 0.00 0.00 0.00 2.90
4641 4929 4.574674 ACACCAAGCTCCAATCTGAATA 57.425 40.909 0.00 0.00 0.00 1.75
4642 4930 5.121380 ACACCAAGCTCCAATCTGAATAT 57.879 39.130 0.00 0.00 0.00 1.28
4650 4938 8.768955 CAAGCTCCAATCTGAATATGTAGTAAC 58.231 37.037 0.00 0.00 0.00 2.50
4665 4955 5.468592 TGTAGTAACGTTTCCTTTATGCGA 58.531 37.500 5.91 0.00 0.00 5.10
4694 4984 2.497675 GCTTGGAGAGTCATGAGGTACA 59.502 50.000 0.00 0.00 0.00 2.90
4701 4991 5.127194 GGAGAGTCATGAGGTACACATTGTA 59.873 44.000 0.00 0.00 37.60 2.41
4754 5060 9.521503 GCTTCAGTTCAAGAAGTTTAAGAAATT 57.478 29.630 11.12 0.00 43.36 1.82
4764 5070 9.822185 AAGAAGTTTAAGAAATTTGTGCTTCAT 57.178 25.926 16.64 8.34 34.15 2.57
4784 5090 9.937175 GCTTCATACTTGAAATAATGTACTTCC 57.063 33.333 0.00 0.00 41.22 3.46
4787 5093 7.713507 TCATACTTGAAATAATGTACTTCCGGG 59.286 37.037 0.00 0.00 0.00 5.73
4838 5203 9.640963 ATTGAGTACTACTGATGTCTGTTTTAC 57.359 33.333 0.00 1.76 0.00 2.01
4839 5204 8.405418 TGAGTACTACTGATGTCTGTTTTACT 57.595 34.615 0.00 10.38 32.31 2.24
4840 5205 9.511272 TGAGTACTACTGATGTCTGTTTTACTA 57.489 33.333 0.00 2.76 31.09 1.82
4841 5206 9.771915 GAGTACTACTGATGTCTGTTTTACTAC 57.228 37.037 0.00 0.00 31.09 2.73
4842 5207 9.517868 AGTACTACTGATGTCTGTTTTACTACT 57.482 33.333 0.00 0.00 30.15 2.57
4843 5208 9.557338 GTACTACTGATGTCTGTTTTACTACTG 57.443 37.037 0.00 0.00 0.00 2.74
4844 5209 8.405418 ACTACTGATGTCTGTTTTACTACTGA 57.595 34.615 0.00 0.00 0.00 3.41
4845 5210 9.026121 ACTACTGATGTCTGTTTTACTACTGAT 57.974 33.333 0.00 0.00 0.00 2.90
4846 5211 9.862371 CTACTGATGTCTGTTTTACTACTGATT 57.138 33.333 0.00 0.00 0.00 2.57
4847 5212 8.539770 ACTGATGTCTGTTTTACTACTGATTG 57.460 34.615 0.00 0.00 0.00 2.67
4848 5213 8.367911 ACTGATGTCTGTTTTACTACTGATTGA 58.632 33.333 0.00 0.00 0.00 2.57
4849 5214 8.763049 TGATGTCTGTTTTACTACTGATTGAG 57.237 34.615 0.00 0.00 0.00 3.02
4850 5215 8.367911 TGATGTCTGTTTTACTACTGATTGAGT 58.632 33.333 0.00 0.00 38.88 3.41
4851 5216 9.856488 GATGTCTGTTTTACTACTGATTGAGTA 57.144 33.333 0.00 0.00 35.96 2.59
4852 5217 9.640963 ATGTCTGTTTTACTACTGATTGAGTAC 57.359 33.333 0.00 0.00 35.96 2.73
4853 5218 8.857098 TGTCTGTTTTACTACTGATTGAGTACT 58.143 33.333 0.00 0.00 35.96 2.73
4861 5226 9.682465 TTACTACTGATTGAGTACTACTGATGT 57.318 33.333 0.00 0.00 35.96 3.06
4862 5227 8.215926 ACTACTGATTGAGTACTACTGATGTC 57.784 38.462 0.00 0.00 35.96 3.06
4863 5228 8.050325 ACTACTGATTGAGTACTACTGATGTCT 58.950 37.037 0.00 0.00 35.96 3.41
4864 5229 7.094508 ACTGATTGAGTACTACTGATGTCTG 57.905 40.000 0.00 0.00 30.86 3.51
4865 5230 6.661377 ACTGATTGAGTACTACTGATGTCTGT 59.339 38.462 0.00 0.00 30.86 3.41
4866 5231 7.177568 ACTGATTGAGTACTACTGATGTCTGTT 59.822 37.037 0.00 0.00 30.86 3.16
4867 5232 7.896811 TGATTGAGTACTACTGATGTCTGTTT 58.103 34.615 0.00 0.00 0.00 2.83
4868 5233 8.367911 TGATTGAGTACTACTGATGTCTGTTTT 58.632 33.333 0.00 0.00 0.00 2.43
4869 5234 9.856488 GATTGAGTACTACTGATGTCTGTTTTA 57.144 33.333 0.00 0.00 0.00 1.52
4912 5277 5.427806 TCTGGAATCTGGATTGAGACTCATT 59.572 40.000 5.87 2.39 0.00 2.57
4913 5278 5.434408 TGGAATCTGGATTGAGACTCATTG 58.566 41.667 5.87 0.00 0.00 2.82
4914 5279 5.190330 TGGAATCTGGATTGAGACTCATTGA 59.810 40.000 5.87 1.49 0.00 2.57
4915 5280 5.759273 GGAATCTGGATTGAGACTCATTGAG 59.241 44.000 12.17 12.17 35.52 3.02
4916 5281 6.407865 GGAATCTGGATTGAGACTCATTGAGA 60.408 42.308 20.33 6.27 33.32 3.27
4917 5282 6.750660 ATCTGGATTGAGACTCATTGAGAT 57.249 37.500 20.33 8.14 33.32 2.75
4918 5283 6.556974 TCTGGATTGAGACTCATTGAGATT 57.443 37.500 20.33 7.45 33.32 2.40
4919 5284 6.346896 TCTGGATTGAGACTCATTGAGATTG 58.653 40.000 20.33 0.00 33.32 2.67
4920 5285 5.434408 TGGATTGAGACTCATTGAGATTGG 58.566 41.667 20.33 0.00 33.32 3.16
4921 5286 5.045359 TGGATTGAGACTCATTGAGATTGGT 60.045 40.000 20.33 0.00 33.32 3.67
4922 5287 5.296283 GGATTGAGACTCATTGAGATTGGTG 59.704 44.000 20.33 0.00 33.32 4.17
4923 5288 5.488262 TTGAGACTCATTGAGATTGGTGA 57.512 39.130 20.33 0.00 33.32 4.02
4924 5289 4.825422 TGAGACTCATTGAGATTGGTGAC 58.175 43.478 20.33 3.81 33.32 3.67
4925 5290 4.284234 TGAGACTCATTGAGATTGGTGACA 59.716 41.667 20.33 5.99 33.74 3.58
4926 5291 5.221702 TGAGACTCATTGAGATTGGTGACAA 60.222 40.000 20.33 0.00 43.29 3.18
4956 5321 9.667107 TCATTAGTTTTGTTAATAGACAGGAGG 57.333 33.333 0.00 0.00 0.00 4.30
4957 5322 9.449719 CATTAGTTTTGTTAATAGACAGGAGGT 57.550 33.333 0.00 0.00 0.00 3.85
4959 5324 9.856162 TTAGTTTTGTTAATAGACAGGAGGTTT 57.144 29.630 0.00 0.00 0.00 3.27
4960 5325 8.392372 AGTTTTGTTAATAGACAGGAGGTTTC 57.608 34.615 0.00 0.00 0.00 2.78
4961 5326 8.218488 AGTTTTGTTAATAGACAGGAGGTTTCT 58.782 33.333 0.00 0.00 0.00 2.52
4962 5327 7.979444 TTTGTTAATAGACAGGAGGTTTCTG 57.021 36.000 0.00 0.00 38.16 3.02
4963 5328 6.681729 TGTTAATAGACAGGAGGTTTCTGT 57.318 37.500 0.00 0.00 46.82 3.41
4968 5333 0.398318 ACAGGAGGTTTCTGTCAGCC 59.602 55.000 0.00 0.00 41.10 4.85
4969 5334 0.322008 CAGGAGGTTTCTGTCAGCCC 60.322 60.000 0.00 0.00 0.00 5.19
4970 5335 1.002011 GGAGGTTTCTGTCAGCCCC 60.002 63.158 0.00 0.00 0.00 5.80
4971 5336 1.002011 GAGGTTTCTGTCAGCCCCC 60.002 63.158 0.00 0.00 0.00 5.40
4972 5337 2.359975 GGTTTCTGTCAGCCCCCG 60.360 66.667 0.00 0.00 0.00 5.73
4973 5338 3.056328 GTTTCTGTCAGCCCCCGC 61.056 66.667 0.00 0.00 0.00 6.13
4974 5339 4.697756 TTTCTGTCAGCCCCCGCG 62.698 66.667 0.00 0.00 41.18 6.46
5004 5369 2.920912 AGGCGACTCGGGGACAAA 60.921 61.111 0.00 0.00 32.90 2.83
5005 5370 2.741211 GGCGACTCGGGGACAAAC 60.741 66.667 0.00 0.00 0.00 2.93
5006 5371 2.741211 GCGACTCGGGGACAAACC 60.741 66.667 0.00 0.00 38.08 3.27
5016 5381 2.789842 GGACAAACCCTAATCGCCC 58.210 57.895 0.00 0.00 0.00 6.13
5017 5382 0.750546 GGACAAACCCTAATCGCCCC 60.751 60.000 0.00 0.00 0.00 5.80
5018 5383 1.078001 ACAAACCCTAATCGCCCCG 60.078 57.895 0.00 0.00 0.00 5.73
5019 5384 1.222387 CAAACCCTAATCGCCCCGA 59.778 57.895 0.00 0.00 41.13 5.14
5020 5385 1.093496 CAAACCCTAATCGCCCCGAC 61.093 60.000 0.00 0.00 39.18 4.79
5021 5386 2.261430 AAACCCTAATCGCCCCGACC 62.261 60.000 0.00 0.00 39.18 4.79
5022 5387 3.937447 CCCTAATCGCCCCGACCC 61.937 72.222 0.00 0.00 39.18 4.46
5023 5388 4.295119 CCTAATCGCCCCGACCCG 62.295 72.222 0.00 0.00 39.18 5.28
5024 5389 4.963428 CTAATCGCCCCGACCCGC 62.963 72.222 0.00 0.00 39.18 6.13
5035 5400 3.775654 GACCCGCTCCTCCCTGTG 61.776 72.222 0.00 0.00 0.00 3.66
5039 5404 4.803426 CGCTCCTCCCTGTGCGTC 62.803 72.222 0.00 0.00 42.93 5.19
5040 5405 4.459089 GCTCCTCCCTGTGCGTCC 62.459 72.222 0.00 0.00 0.00 4.79
5041 5406 3.775654 CTCCTCCCTGTGCGTCCC 61.776 72.222 0.00 0.00 0.00 4.46
5093 5458 3.998672 CCGCCACGTGGTACTGGT 61.999 66.667 33.92 0.00 37.57 4.00
5094 5459 2.736995 CGCCACGTGGTACTGGTG 60.737 66.667 33.92 11.52 37.57 4.17
5095 5460 2.738480 GCCACGTGGTACTGGTGA 59.262 61.111 33.92 0.00 35.00 4.02
5096 5461 1.070105 GCCACGTGGTACTGGTGAA 59.930 57.895 33.92 0.00 35.00 3.18
5097 5462 0.949105 GCCACGTGGTACTGGTGAAG 60.949 60.000 33.92 6.07 35.00 3.02
5098 5463 0.320421 CCACGTGGTACTGGTGAAGG 60.320 60.000 26.95 0.00 35.00 3.46
5099 5464 0.391597 CACGTGGTACTGGTGAAGGT 59.608 55.000 7.95 0.00 35.00 3.50
5100 5465 0.391597 ACGTGGTACTGGTGAAGGTG 59.608 55.000 0.00 0.00 0.00 4.00
5101 5466 0.320421 CGTGGTACTGGTGAAGGTGG 60.320 60.000 0.00 0.00 0.00 4.61
5102 5467 0.605589 GTGGTACTGGTGAAGGTGGC 60.606 60.000 0.00 0.00 0.00 5.01
5103 5468 1.375523 GGTACTGGTGAAGGTGGCG 60.376 63.158 0.00 0.00 0.00 5.69
5104 5469 1.375523 GTACTGGTGAAGGTGGCGG 60.376 63.158 0.00 0.00 0.00 6.13
5105 5470 3.248446 TACTGGTGAAGGTGGCGGC 62.248 63.158 0.00 0.00 0.00 6.53
5122 5487 3.917760 CGGGGATCCAGGCGTCTC 61.918 72.222 15.23 0.00 0.00 3.36
5123 5488 3.551407 GGGGATCCAGGCGTCTCC 61.551 72.222 15.23 0.00 0.00 3.71
5125 5490 2.503382 GGGATCCAGGCGTCTCCTC 61.503 68.421 15.23 0.00 45.52 3.71
5126 5491 2.503382 GGATCCAGGCGTCTCCTCC 61.503 68.421 6.95 0.00 45.52 4.30
5127 5492 1.456705 GATCCAGGCGTCTCCTCCT 60.457 63.158 0.00 0.00 45.52 3.69
5128 5493 1.002274 ATCCAGGCGTCTCCTCCTT 59.998 57.895 0.00 0.00 45.52 3.36
5129 5494 1.333636 ATCCAGGCGTCTCCTCCTTG 61.334 60.000 0.00 0.00 45.52 3.61
5130 5495 2.581354 CAGGCGTCTCCTCCTTGG 59.419 66.667 0.00 0.00 45.52 3.61
5131 5496 2.685380 AGGCGTCTCCTCCTTGGG 60.685 66.667 0.00 0.00 43.20 4.12
5132 5497 4.475135 GGCGTCTCCTCCTTGGGC 62.475 72.222 0.00 0.00 36.20 5.36
5133 5498 4.821589 GCGTCTCCTCCTTGGGCG 62.822 72.222 0.00 0.00 36.20 6.13
5134 5499 4.148825 CGTCTCCTCCTTGGGCGG 62.149 72.222 0.00 0.00 36.20 6.13
5135 5500 3.787001 GTCTCCTCCTTGGGCGGG 61.787 72.222 0.00 0.00 36.20 6.13
5153 5518 2.031768 GAGCCTCGGATCCATGGC 59.968 66.667 28.19 28.19 45.21 4.40
5155 5520 4.996434 GCCTCGGATCCATGGCGG 62.996 72.222 23.78 9.08 35.79 6.13
5156 5521 4.996434 CCTCGGATCCATGGCGGC 62.996 72.222 13.41 0.00 33.14 6.53
5216 5581 2.765969 CCACTTCCCTGGCCATGT 59.234 61.111 5.51 0.00 0.00 3.21
5217 5582 1.679977 CCACTTCCCTGGCCATGTG 60.680 63.158 5.51 10.62 0.00 3.21
5218 5583 1.679977 CACTTCCCTGGCCATGTGG 60.680 63.158 5.51 7.95 38.53 4.17
5219 5584 1.852157 ACTTCCCTGGCCATGTGGA 60.852 57.895 5.51 10.58 37.39 4.02
5220 5585 1.217057 ACTTCCCTGGCCATGTGGAT 61.217 55.000 16.93 3.65 37.39 3.41
5221 5586 0.754217 CTTCCCTGGCCATGTGGATG 60.754 60.000 16.93 15.31 37.39 3.51
5228 5593 3.807839 CCATGTGGATGGCGGGGA 61.808 66.667 0.00 0.00 43.00 4.81
5229 5594 2.203252 CATGTGGATGGCGGGGAG 60.203 66.667 0.00 0.00 0.00 4.30
5230 5595 3.492353 ATGTGGATGGCGGGGAGG 61.492 66.667 0.00 0.00 0.00 4.30
5232 5597 4.489771 GTGGATGGCGGGGAGGTG 62.490 72.222 0.00 0.00 0.00 4.00
5235 5600 4.489771 GATGGCGGGGAGGTGGTG 62.490 72.222 0.00 0.00 0.00 4.17
5241 5606 4.048470 GGGGAGGTGGTGGGCTTC 62.048 72.222 0.00 0.00 0.00 3.86
5242 5607 4.410400 GGGAGGTGGTGGGCTTCG 62.410 72.222 0.00 0.00 0.00 3.79
5243 5608 4.410400 GGAGGTGGTGGGCTTCGG 62.410 72.222 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 63 2.975410 TGATGAAAGCAGCAAGTTCG 57.025 45.000 0.00 0.00 37.51 3.95
145 150 3.638160 AGCTTTCAATGTCAACCACACAT 59.362 39.130 0.00 0.00 38.04 3.21
247 259 0.584396 TTACGTTGCTGTTTCAGGCG 59.416 50.000 0.00 0.00 31.21 5.52
267 283 8.248253 CGGGAATTTACCTTGTTTTAGCTATTT 58.752 33.333 0.00 0.00 0.00 1.40
315 333 7.493971 ACTTCTTTCTCAGTCGATCCATATTTG 59.506 37.037 0.00 0.00 0.00 2.32
321 339 5.477291 ACTTACTTCTTTCTCAGTCGATCCA 59.523 40.000 0.00 0.00 0.00 3.41
347 365 8.455682 AGAACTTACTTCTTTCTCAGTCGATAG 58.544 37.037 0.00 0.00 35.49 2.08
348 366 8.338072 AGAACTTACTTCTTTCTCAGTCGATA 57.662 34.615 0.00 0.00 35.49 2.92
349 367 7.040340 TGAGAACTTACTTCTTTCTCAGTCGAT 60.040 37.037 8.78 0.00 46.55 3.59
350 368 6.262496 TGAGAACTTACTTCTTTCTCAGTCGA 59.738 38.462 8.78 0.00 46.55 4.20
351 369 6.439599 TGAGAACTTACTTCTTTCTCAGTCG 58.560 40.000 8.78 0.00 46.55 4.18
356 374 7.439655 TGCTTCTTGAGAACTTACTTCTTTCTC 59.560 37.037 4.02 4.02 43.75 2.87
357 375 7.275920 TGCTTCTTGAGAACTTACTTCTTTCT 58.724 34.615 0.00 0.00 39.53 2.52
358 376 7.307692 CCTGCTTCTTGAGAACTTACTTCTTTC 60.308 40.741 0.00 0.00 39.53 2.62
359 377 6.484977 CCTGCTTCTTGAGAACTTACTTCTTT 59.515 38.462 0.00 0.00 39.53 2.52
360 378 5.994668 CCTGCTTCTTGAGAACTTACTTCTT 59.005 40.000 0.00 0.00 39.53 2.52
361 379 5.305644 TCCTGCTTCTTGAGAACTTACTTCT 59.694 40.000 0.00 0.00 42.40 2.85
362 380 5.542779 TCCTGCTTCTTGAGAACTTACTTC 58.457 41.667 0.00 0.00 0.00 3.01
363 381 5.552870 TCCTGCTTCTTGAGAACTTACTT 57.447 39.130 0.00 0.00 0.00 2.24
364 382 5.247110 TGATCCTGCTTCTTGAGAACTTACT 59.753 40.000 0.00 0.00 0.00 2.24
365 383 5.482908 TGATCCTGCTTCTTGAGAACTTAC 58.517 41.667 0.00 0.00 0.00 2.34
398 416 6.089417 CCATTTCAATCAGCCGTTAGTTTTTC 59.911 38.462 0.00 0.00 0.00 2.29
413 431 5.964958 TTTCTCTGTCACCCATTTCAATC 57.035 39.130 0.00 0.00 0.00 2.67
511 529 1.134401 ACGGAGGGAGTACAATGCATG 60.134 52.381 0.00 0.00 0.00 4.06
519 548 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
520 549 2.907696 TGATTTTGGAACGGAGGGAGTA 59.092 45.455 0.00 0.00 0.00 2.59
521 550 1.702957 TGATTTTGGAACGGAGGGAGT 59.297 47.619 0.00 0.00 0.00 3.85
522 551 2.290323 ACTGATTTTGGAACGGAGGGAG 60.290 50.000 0.00 0.00 0.00 4.30
523 552 1.702957 ACTGATTTTGGAACGGAGGGA 59.297 47.619 0.00 0.00 0.00 4.20
524 553 1.812571 CACTGATTTTGGAACGGAGGG 59.187 52.381 0.00 0.00 0.00 4.30
525 554 2.504367 ACACTGATTTTGGAACGGAGG 58.496 47.619 0.00 0.00 0.00 4.30
526 555 5.880054 AATACACTGATTTTGGAACGGAG 57.120 39.130 0.00 0.00 0.00 4.63
527 556 7.747155 TTAAATACACTGATTTTGGAACGGA 57.253 32.000 0.00 0.00 31.51 4.69
528 557 9.498307 GTATTAAATACACTGATTTTGGAACGG 57.502 33.333 0.00 0.00 35.81 4.44
566 595 4.197107 AAATAAGCGTCGCTGATTTAGC 57.803 40.909 32.20 0.00 44.98 3.09
576 605 2.787680 CTCCGTCCTAAAATAAGCGTCG 59.212 50.000 0.00 0.00 0.00 5.12
580 609 5.899299 TGTACTCTCCGTCCTAAAATAAGC 58.101 41.667 0.00 0.00 0.00 3.09
589 618 5.104900 AGCAATATTTTGTACTCTCCGTCCT 60.105 40.000 0.00 0.00 35.17 3.85
729 759 2.324541 GGAGTCTCTGGTCCATGCTAT 58.675 52.381 0.00 0.00 32.55 2.97
736 766 1.633774 TGACTTGGAGTCTCTGGTCC 58.366 55.000 9.27 0.00 45.27 4.46
741 771 2.894731 TGGTCATGACTTGGAGTCTCT 58.105 47.619 24.50 0.00 45.27 3.10
748 778 3.304928 GCAGAAACTTGGTCATGACTTGG 60.305 47.826 24.50 15.97 0.00 3.61
753 783 1.522668 CGGCAGAAACTTGGTCATGA 58.477 50.000 0.00 0.00 0.00 3.07
759 789 0.385390 AACAAGCGGCAGAAACTTGG 59.615 50.000 1.45 0.00 44.01 3.61
770 800 2.861462 TTCCAAGTTTCAACAAGCGG 57.139 45.000 0.00 0.00 0.00 5.52
802 832 5.351233 ACGTGCTTGAATTATCAACGAAA 57.649 34.783 8.11 0.00 40.59 3.46
804 834 3.060230 CGACGTGCTTGAATTATCAACGA 59.940 43.478 0.00 0.00 40.59 3.85
815 845 0.101579 TGTGAAGTCGACGTGCTTGA 59.898 50.000 9.23 0.00 0.00 3.02
937 1076 3.979495 GTGTGTGAAGTCGACGAAATAGT 59.021 43.478 10.46 0.00 0.00 2.12
976 1115 4.331968 TCGGATTTGCAACAAGGATAGTT 58.668 39.130 0.00 0.00 0.00 2.24
987 1126 1.955778 CAGGCCATATCGGATTTGCAA 59.044 47.619 5.01 0.00 36.56 4.08
1084 1231 0.681733 ACGAGAGTGTTGCCTGATGT 59.318 50.000 0.00 0.00 46.97 3.06
1113 1260 2.282462 CCAAGCGCAAAGTCCCCT 60.282 61.111 11.47 0.00 0.00 4.79
1160 1307 2.057922 ACCATATGCCAAGGTAGAGGG 58.942 52.381 0.98 0.98 32.92 4.30
1281 1428 0.179097 GGGAGTCGGACAAGATCAGC 60.179 60.000 11.27 0.00 0.00 4.26
1357 1504 0.244994 GTGTCGAGGATCACTGCAGT 59.755 55.000 15.25 15.25 33.17 4.40
1377 1524 2.750350 CGGAGGACCAAGTTGCCT 59.250 61.111 1.98 1.98 35.59 4.75
1401 1548 0.657840 GCCATATGTCTGTGCCGTTC 59.342 55.000 1.24 0.00 0.00 3.95
1412 1559 4.142093 GGTGATCAAAGCTTTGCCATATGT 60.142 41.667 30.35 12.10 38.05 2.29
1447 1594 0.329596 AACCTCATGCCAGGAAGGAC 59.670 55.000 7.43 0.00 41.22 3.85
1485 1632 4.619227 AGACGCCCAACCACACGG 62.619 66.667 0.00 0.00 38.77 4.94
1572 1719 4.949856 CCATGCCAAATTACTACCTGAAGT 59.050 41.667 0.00 0.00 0.00 3.01
1668 1815 3.686016 TGTTTGGTAAAGGATGGAGCTC 58.314 45.455 4.71 4.71 0.00 4.09
1680 1827 2.719531 TGTCAGTGGCTGTTTGGTAA 57.280 45.000 0.00 0.00 32.61 2.85
1720 1867 3.501349 AGCCATCGGAGACTGTATACAT 58.499 45.455 5.91 0.00 42.51 2.29
1851 1998 0.889306 AGCCACACGAGGAGTAGAAC 59.111 55.000 0.00 0.00 0.00 3.01
1858 2005 1.215382 CGAATGAGCCACACGAGGA 59.785 57.895 0.00 0.00 0.00 3.71
1940 2087 4.360889 ACATCCTCTGGAGAAGTCAAGAT 58.639 43.478 0.00 0.00 31.83 2.40
2256 2403 1.617322 ATAATGCTAGGGCTCGACGA 58.383 50.000 0.00 0.00 39.59 4.20
2297 2444 2.942376 CCTGTCAAGTGCAGTTACACAA 59.058 45.455 6.43 0.00 43.23 3.33
2529 2706 5.591472 ACTTGCGACACTACATAGTACCATA 59.409 40.000 0.00 0.00 34.13 2.74
2732 2914 6.205853 TGTCAACAGTTAGACAACAAAGTTGT 59.794 34.615 14.68 14.68 41.42 3.32
2802 2988 8.125448 GGCATATCTTAACATCTGTCTTTGTTC 58.875 37.037 0.00 0.00 37.29 3.18
2827 3013 5.395682 TCCAATTTCATTTGAAGAGCTGG 57.604 39.130 0.00 0.87 35.21 4.85
2982 3180 7.147915 TGGGACAATTATCCTTAAAATGAGCAC 60.148 37.037 2.10 0.00 38.95 4.40
3044 3250 5.589855 CAGTCCCTACATGTTTGCATCATTA 59.410 40.000 2.30 0.00 31.99 1.90
3714 3971 5.626142 TGGTGACATGTAACCACTGTTTAT 58.374 37.500 28.63 0.00 39.18 1.40
3882 4142 8.602328 CCAATGAAATTTTGCGCTTCAAATATA 58.398 29.630 9.73 2.07 43.53 0.86
3886 4149 4.574013 ACCAATGAAATTTTGCGCTTCAAA 59.426 33.333 9.73 5.67 42.50 2.69
3889 4152 3.123453 GGACCAATGAAATTTTGCGCTTC 59.877 43.478 9.73 3.90 31.22 3.86
3928 4196 6.456988 GCAACCGACTTAAGTTATGATCAAGG 60.457 42.308 10.02 5.32 0.00 3.61
3945 4214 2.617274 GCCTGAACCAGCAACCGAC 61.617 63.158 0.00 0.00 0.00 4.79
3970 4239 1.287425 CGTTTCCGTCTTCCCATAGC 58.713 55.000 0.00 0.00 0.00 2.97
3988 4257 1.656818 ATTCCACCAATTCTGCGGCG 61.657 55.000 0.51 0.51 0.00 6.46
4009 4278 4.532834 GAGGACACCTCTCTAAGACAGAT 58.467 47.826 10.16 0.00 46.41 2.90
4199 4468 2.084610 TCCATCTGTTCTGTCGCTTG 57.915 50.000 0.00 0.00 0.00 4.01
4202 4471 3.896648 TTTTTCCATCTGTTCTGTCGC 57.103 42.857 0.00 0.00 0.00 5.19
4203 4472 5.869753 AGATTTTTCCATCTGTTCTGTCG 57.130 39.130 0.00 0.00 31.88 4.35
4222 4494 7.024345 TGTGATGCTTATCCCATTCATAGAT 57.976 36.000 0.00 0.00 0.00 1.98
4320 4592 3.142951 TGTCCAAACCGACACATTAAGG 58.857 45.455 0.00 0.00 37.85 2.69
4353 4626 2.562125 GCAACCGGCACATAAGGAA 58.438 52.632 0.00 0.00 43.97 3.36
4363 4636 2.356135 TCAAAGATAAGAGCAACCGGC 58.644 47.619 0.00 0.00 45.30 6.13
4364 4637 3.941483 ACATCAAAGATAAGAGCAACCGG 59.059 43.478 0.00 0.00 0.00 5.28
4365 4638 4.728882 GCACATCAAAGATAAGAGCAACCG 60.729 45.833 0.00 0.00 0.00 4.44
4371 4644 8.503486 GCATATTTGCACATCAAAGATAAGAG 57.497 34.615 3.00 0.00 46.68 2.85
4394 4667 0.957395 GCTGTAGCTTCTTGCAGGCA 60.957 55.000 0.00 0.00 45.94 4.75
4401 4674 3.432517 CTGCTCGCTGTAGCTTCTT 57.567 52.632 0.00 0.00 43.19 2.52
4411 4684 0.103937 GAGTTAGGATGCTGCTCGCT 59.896 55.000 0.00 0.00 40.11 4.93
4419 4692 1.840635 AGGACTTGGGAGTTAGGATGC 59.159 52.381 0.00 0.00 35.88 3.91
4433 4706 4.463891 CCAGCAACATTGGATTTAGGACTT 59.536 41.667 0.00 0.00 37.96 3.01
4448 4721 1.745232 AACGACAAACTCCAGCAACA 58.255 45.000 0.00 0.00 0.00 3.33
4450 4723 3.462483 TCTAACGACAAACTCCAGCAA 57.538 42.857 0.00 0.00 0.00 3.91
4451 4724 3.325870 CATCTAACGACAAACTCCAGCA 58.674 45.455 0.00 0.00 0.00 4.41
4467 4740 6.735678 TTGATTTGCTTCTAAACGCATCTA 57.264 33.333 0.00 0.00 35.85 1.98
4472 4745 5.881637 TTGTTTGATTTGCTTCTAAACGC 57.118 34.783 0.00 0.00 34.80 4.84
4477 4750 5.708948 CCCGAATTGTTTGATTTGCTTCTA 58.291 37.500 0.00 0.00 0.00 2.10
4480 4753 3.066380 GCCCGAATTGTTTGATTTGCTT 58.934 40.909 0.00 0.00 0.00 3.91
4490 4763 1.586154 CTGAAGCGGCCCGAATTGTT 61.586 55.000 7.68 0.00 0.00 2.83
4491 4764 2.033448 TGAAGCGGCCCGAATTGT 59.967 55.556 7.68 0.00 0.00 2.71
4492 4765 0.742990 TACTGAAGCGGCCCGAATTG 60.743 55.000 7.68 0.00 0.00 2.32
4495 4768 2.577059 CTACTGAAGCGGCCCGAA 59.423 61.111 7.68 0.00 0.00 4.30
4496 4769 3.458163 CCTACTGAAGCGGCCCGA 61.458 66.667 7.68 0.00 0.00 5.14
4522 4810 2.997897 ACGGCCTCCTCCTGTCAC 60.998 66.667 0.00 0.00 0.00 3.67
4523 4811 2.680352 GACGGCCTCCTCCTGTCA 60.680 66.667 0.00 0.00 33.23 3.58
4527 4815 2.765807 CCATGACGGCCTCCTCCT 60.766 66.667 0.00 0.00 0.00 3.69
4536 4824 2.046023 TCAAGCTGGCCATGACGG 60.046 61.111 5.51 0.00 38.11 4.79
4537 4825 1.642037 CTGTCAAGCTGGCCATGACG 61.642 60.000 25.51 18.57 44.95 4.35
4538 4826 1.930908 GCTGTCAAGCTGGCCATGAC 61.931 60.000 24.92 24.92 46.60 3.06
4539 4827 1.676635 GCTGTCAAGCTGGCCATGA 60.677 57.895 5.51 4.19 46.60 3.07
4540 4828 2.882876 GCTGTCAAGCTGGCCATG 59.117 61.111 5.51 0.98 46.60 3.66
4559 4847 1.810030 CTTCCGCTAGTCGTTGGGC 60.810 63.158 5.97 0.00 36.19 5.36
4561 4849 1.352156 GCACTTCCGCTAGTCGTTGG 61.352 60.000 5.97 0.00 36.19 3.77
4612 4900 3.126001 TGGAGCTTGGTGTAAGACTTG 57.874 47.619 0.00 0.00 38.76 3.16
4623 4911 6.294473 ACTACATATTCAGATTGGAGCTTGG 58.706 40.000 0.00 0.00 0.00 3.61
4641 4929 6.101332 TCGCATAAAGGAAACGTTACTACAT 58.899 36.000 0.00 0.00 37.11 2.29
4642 4930 5.468592 TCGCATAAAGGAAACGTTACTACA 58.531 37.500 0.00 0.00 37.11 2.74
4650 4938 1.529826 GCTGCTCGCATAAAGGAAACG 60.530 52.381 0.00 0.00 38.92 3.60
4674 4964 3.511540 TGTGTACCTCATGACTCTCCAAG 59.488 47.826 0.00 0.00 0.00 3.61
4721 5011 7.674471 AACTTCTTGAACTGAAGCTTATACC 57.326 36.000 0.00 0.00 43.23 2.73
4764 5070 5.818857 GCCCGGAAGTACATTATTTCAAGTA 59.181 40.000 0.73 0.00 0.00 2.24
4765 5071 4.638865 GCCCGGAAGTACATTATTTCAAGT 59.361 41.667 0.73 0.00 0.00 3.16
4774 5080 5.876357 ACAATATATGCCCGGAAGTACATT 58.124 37.500 0.73 0.00 0.00 2.71
4782 5088 4.431416 AAACAGACAATATATGCCCGGA 57.569 40.909 0.73 0.00 0.00 5.14
4784 5090 6.861065 AGTAAAACAGACAATATATGCCCG 57.139 37.500 0.00 0.00 0.00 6.13
4838 5203 8.341903 CAGACATCAGTAGTACTCAATCAGTAG 58.658 40.741 0.00 0.00 38.35 2.57
4839 5204 7.829706 ACAGACATCAGTAGTACTCAATCAGTA 59.170 37.037 0.00 0.00 36.43 2.74
4840 5205 6.661377 ACAGACATCAGTAGTACTCAATCAGT 59.339 38.462 0.00 0.00 39.41 3.41
4841 5206 7.094508 ACAGACATCAGTAGTACTCAATCAG 57.905 40.000 0.00 0.00 0.00 2.90
4842 5207 7.468141 AACAGACATCAGTAGTACTCAATCA 57.532 36.000 0.00 0.00 0.00 2.57
4843 5208 8.764524 AAAACAGACATCAGTAGTACTCAATC 57.235 34.615 0.00 0.00 0.00 2.67
4844 5209 9.640963 GTAAAACAGACATCAGTAGTACTCAAT 57.359 33.333 0.00 0.00 0.00 2.57
4845 5210 8.086522 GGTAAAACAGACATCAGTAGTACTCAA 58.913 37.037 0.00 0.00 0.00 3.02
4846 5211 7.450634 AGGTAAAACAGACATCAGTAGTACTCA 59.549 37.037 0.00 0.00 0.00 3.41
4847 5212 7.755822 CAGGTAAAACAGACATCAGTAGTACTC 59.244 40.741 0.00 0.00 0.00 2.59
4848 5213 7.309867 CCAGGTAAAACAGACATCAGTAGTACT 60.310 40.741 0.00 0.00 0.00 2.73
4849 5214 6.812160 CCAGGTAAAACAGACATCAGTAGTAC 59.188 42.308 0.00 0.00 0.00 2.73
4850 5215 6.722590 TCCAGGTAAAACAGACATCAGTAGTA 59.277 38.462 0.00 0.00 0.00 1.82
4851 5216 5.542635 TCCAGGTAAAACAGACATCAGTAGT 59.457 40.000 0.00 0.00 0.00 2.73
4852 5217 6.037786 TCCAGGTAAAACAGACATCAGTAG 57.962 41.667 0.00 0.00 0.00 2.57
4853 5218 6.269077 TCTTCCAGGTAAAACAGACATCAGTA 59.731 38.462 0.00 0.00 0.00 2.74
4854 5219 4.974645 TCCAGGTAAAACAGACATCAGT 57.025 40.909 0.00 0.00 0.00 3.41
4855 5220 5.409826 GTCTTCCAGGTAAAACAGACATCAG 59.590 44.000 0.00 0.00 32.52 2.90
4856 5221 5.163248 TGTCTTCCAGGTAAAACAGACATCA 60.163 40.000 0.00 0.00 36.57 3.07
4857 5222 5.305585 TGTCTTCCAGGTAAAACAGACATC 58.694 41.667 0.00 0.00 36.57 3.06
4858 5223 5.304686 TGTCTTCCAGGTAAAACAGACAT 57.695 39.130 0.00 0.00 36.57 3.06
4859 5224 4.764050 TGTCTTCCAGGTAAAACAGACA 57.236 40.909 0.00 0.00 38.61 3.41
4860 5225 9.614792 AATATATGTCTTCCAGGTAAAACAGAC 57.385 33.333 0.00 0.00 32.81 3.51
4861 5226 9.613428 CAATATATGTCTTCCAGGTAAAACAGA 57.387 33.333 0.00 0.00 0.00 3.41
4862 5227 9.396022 ACAATATATGTCTTCCAGGTAAAACAG 57.604 33.333 0.00 0.00 37.96 3.16
4930 5295 9.667107 CCTCCTGTCTATTAACAAAACTAATGA 57.333 33.333 0.00 0.00 0.00 2.57
4931 5296 9.449719 ACCTCCTGTCTATTAACAAAACTAATG 57.550 33.333 0.00 0.00 0.00 1.90
4933 5298 9.856162 AAACCTCCTGTCTATTAACAAAACTAA 57.144 29.630 0.00 0.00 0.00 2.24
4934 5299 9.498176 GAAACCTCCTGTCTATTAACAAAACTA 57.502 33.333 0.00 0.00 0.00 2.24
4935 5300 8.218488 AGAAACCTCCTGTCTATTAACAAAACT 58.782 33.333 0.00 0.00 0.00 2.66
4936 5301 8.290325 CAGAAACCTCCTGTCTATTAACAAAAC 58.710 37.037 0.00 0.00 0.00 2.43
4937 5302 7.996644 ACAGAAACCTCCTGTCTATTAACAAAA 59.003 33.333 0.00 0.00 40.55 2.44
4938 5303 7.514721 ACAGAAACCTCCTGTCTATTAACAAA 58.485 34.615 0.00 0.00 40.55 2.83
4939 5304 7.074653 ACAGAAACCTCCTGTCTATTAACAA 57.925 36.000 0.00 0.00 40.55 2.83
4940 5305 6.681729 ACAGAAACCTCCTGTCTATTAACA 57.318 37.500 0.00 0.00 40.55 2.41
4949 5314 0.398318 GGCTGACAGAAACCTCCTGT 59.602 55.000 6.65 0.00 46.51 4.00
4950 5315 0.322008 GGGCTGACAGAAACCTCCTG 60.322 60.000 6.65 0.00 37.64 3.86
4951 5316 1.492993 GGGGCTGACAGAAACCTCCT 61.493 60.000 6.65 0.00 0.00 3.69
4952 5317 1.002011 GGGGCTGACAGAAACCTCC 60.002 63.158 6.65 0.00 0.00 4.30
4953 5318 1.002011 GGGGGCTGACAGAAACCTC 60.002 63.158 6.65 0.76 0.00 3.85
4954 5319 2.895424 CGGGGGCTGACAGAAACCT 61.895 63.158 6.65 0.00 0.00 3.50
4955 5320 2.359975 CGGGGGCTGACAGAAACC 60.360 66.667 6.65 4.70 0.00 3.27
4956 5321 3.056328 GCGGGGGCTGACAGAAAC 61.056 66.667 6.65 0.00 0.00 2.78
4957 5322 4.697756 CGCGGGGGCTGACAGAAA 62.698 66.667 6.65 0.00 0.00 2.52
4979 5344 2.477176 CCGAGTCGCCTCAGAGGAG 61.477 68.421 21.89 17.79 37.67 3.69
4980 5345 2.438614 CCGAGTCGCCTCAGAGGA 60.439 66.667 21.89 0.00 37.67 3.71
4981 5346 3.522731 CCCGAGTCGCCTCAGAGG 61.523 72.222 12.81 12.81 37.59 3.69
4982 5347 3.522731 CCCCGAGTCGCCTCAGAG 61.523 72.222 7.12 0.00 37.59 3.35
4983 5348 4.043100 TCCCCGAGTCGCCTCAGA 62.043 66.667 7.12 0.00 37.59 3.27
4984 5349 3.827898 GTCCCCGAGTCGCCTCAG 61.828 72.222 7.12 0.00 37.59 3.35
4985 5350 4.671590 TGTCCCCGAGTCGCCTCA 62.672 66.667 7.12 0.54 37.59 3.86
4986 5351 2.939261 TTTGTCCCCGAGTCGCCTC 61.939 63.158 7.12 0.00 0.00 4.70
4987 5352 2.920912 TTTGTCCCCGAGTCGCCT 60.921 61.111 7.12 0.00 0.00 5.52
4988 5353 2.741211 GTTTGTCCCCGAGTCGCC 60.741 66.667 7.12 0.00 0.00 5.54
4989 5354 2.741211 GGTTTGTCCCCGAGTCGC 60.741 66.667 7.12 0.00 0.00 5.19
4998 5363 0.750546 GGGGCGATTAGGGTTTGTCC 60.751 60.000 0.00 0.00 0.00 4.02
4999 5364 1.093496 CGGGGCGATTAGGGTTTGTC 61.093 60.000 0.00 0.00 0.00 3.18
5000 5365 1.078001 CGGGGCGATTAGGGTTTGT 60.078 57.895 0.00 0.00 0.00 2.83
5001 5366 1.093496 GTCGGGGCGATTAGGGTTTG 61.093 60.000 0.00 0.00 38.42 2.93
5002 5367 1.222661 GTCGGGGCGATTAGGGTTT 59.777 57.895 0.00 0.00 38.42 3.27
5003 5368 2.738938 GGTCGGGGCGATTAGGGTT 61.739 63.158 0.00 0.00 38.42 4.11
5004 5369 3.159347 GGTCGGGGCGATTAGGGT 61.159 66.667 0.00 0.00 38.42 4.34
5005 5370 3.937447 GGGTCGGGGCGATTAGGG 61.937 72.222 0.00 0.00 38.42 3.53
5006 5371 4.295119 CGGGTCGGGGCGATTAGG 62.295 72.222 0.00 0.00 38.42 2.69
5007 5372 4.963428 GCGGGTCGGGGCGATTAG 62.963 72.222 0.00 0.00 38.42 1.73
5018 5383 3.775654 CACAGGGAGGAGCGGGTC 61.776 72.222 0.00 0.00 0.00 4.46
5023 5388 4.459089 GGACGCACAGGGAGGAGC 62.459 72.222 0.00 0.00 0.00 4.70
5024 5389 3.775654 GGGACGCACAGGGAGGAG 61.776 72.222 0.00 0.00 0.00 3.69
5053 5418 4.509737 GTGAGTACCTCGGGCGGC 62.510 72.222 0.00 0.00 32.35 6.53
5054 5419 3.834799 GGTGAGTACCTCGGGCGG 61.835 72.222 0.00 0.00 43.97 6.13
5055 5420 4.189188 CGGTGAGTACCTCGGGCG 62.189 72.222 0.00 0.00 45.22 6.13
5056 5421 3.834799 CCGGTGAGTACCTCGGGC 61.835 72.222 0.00 0.00 45.22 6.13
5057 5422 3.834799 GCCGGTGAGTACCTCGGG 61.835 72.222 1.90 9.45 45.22 5.14
5058 5423 4.189188 CGCCGGTGAGTACCTCGG 62.189 72.222 10.20 8.74 45.22 4.63
5059 5424 4.849329 GCGCCGGTGAGTACCTCG 62.849 72.222 21.76 3.19 45.22 4.63
5060 5425 4.509737 GGCGCCGGTGAGTACCTC 62.510 72.222 21.76 0.00 45.22 3.85
5076 5441 3.998672 ACCAGTACCACGTGGCGG 61.999 66.667 34.26 28.19 37.34 6.13
5077 5442 2.702751 TTCACCAGTACCACGTGGCG 62.703 60.000 34.26 19.27 37.34 5.69
5078 5443 0.949105 CTTCACCAGTACCACGTGGC 60.949 60.000 34.26 19.04 37.34 5.01
5079 5444 0.320421 CCTTCACCAGTACCACGTGG 60.320 60.000 32.83 32.83 39.98 4.94
5080 5445 0.391597 ACCTTCACCAGTACCACGTG 59.608 55.000 9.08 9.08 0.00 4.49
5081 5446 0.391597 CACCTTCACCAGTACCACGT 59.608 55.000 0.00 0.00 0.00 4.49
5082 5447 0.320421 CCACCTTCACCAGTACCACG 60.320 60.000 0.00 0.00 0.00 4.94
5083 5448 0.605589 GCCACCTTCACCAGTACCAC 60.606 60.000 0.00 0.00 0.00 4.16
5084 5449 1.758592 GCCACCTTCACCAGTACCA 59.241 57.895 0.00 0.00 0.00 3.25
5085 5450 1.375523 CGCCACCTTCACCAGTACC 60.376 63.158 0.00 0.00 0.00 3.34
5086 5451 1.375523 CCGCCACCTTCACCAGTAC 60.376 63.158 0.00 0.00 0.00 2.73
5087 5452 3.065306 CCGCCACCTTCACCAGTA 58.935 61.111 0.00 0.00 0.00 2.74
5088 5453 4.643387 GCCGCCACCTTCACCAGT 62.643 66.667 0.00 0.00 0.00 4.00
5105 5470 3.917760 GAGACGCCTGGATCCCCG 61.918 72.222 9.90 11.87 34.29 5.73
5106 5471 3.551407 GGAGACGCCTGGATCCCC 61.551 72.222 9.90 0.00 0.00 4.81
5116 5481 4.821589 CGCCCAAGGAGGAGACGC 62.822 72.222 0.00 0.00 41.22 5.19
5117 5482 4.148825 CCGCCCAAGGAGGAGACG 62.149 72.222 0.00 0.00 45.77 4.18
5118 5483 3.787001 CCCGCCCAAGGAGGAGAC 61.787 72.222 4.81 0.00 45.77 3.36
5133 5498 2.527875 ATGGATCCGAGGCTCCCC 60.528 66.667 9.32 5.98 29.93 4.81
5134 5499 2.746359 CATGGATCCGAGGCTCCC 59.254 66.667 9.32 4.69 29.93 4.30
5135 5500 2.746359 CCATGGATCCGAGGCTCC 59.254 66.667 5.56 5.11 0.00 4.70
5136 5501 2.031768 GCCATGGATCCGAGGCTC 59.968 66.667 30.15 3.87 43.70 4.70
5137 5502 3.933722 CGCCATGGATCCGAGGCT 61.934 66.667 32.33 5.45 44.85 4.58
5138 5503 4.996434 CCGCCATGGATCCGAGGC 62.996 72.222 28.57 28.57 42.00 4.70
5139 5504 4.996434 GCCGCCATGGATCCGAGG 62.996 72.222 18.40 16.05 42.00 4.63
5199 5564 1.679977 CACATGGCCAGGGAAGTGG 60.680 63.158 23.35 0.00 41.01 4.00
5200 5565 1.679977 CCACATGGCCAGGGAAGTG 60.680 63.158 23.35 17.97 0.00 3.16
5201 5566 1.217057 ATCCACATGGCCAGGGAAGT 61.217 55.000 23.35 6.75 32.25 3.01
5202 5567 0.754217 CATCCACATGGCCAGGGAAG 60.754 60.000 23.35 15.91 32.25 3.46
5203 5568 1.307309 CATCCACATGGCCAGGGAA 59.693 57.895 23.35 6.72 32.25 3.97
5204 5569 2.692824 CCATCCACATGGCCAGGGA 61.693 63.158 23.35 22.44 43.55 4.20
5205 5570 2.123597 CCATCCACATGGCCAGGG 60.124 66.667 23.35 17.81 43.55 4.45
5212 5577 2.203252 CTCCCCGCCATCCACATG 60.203 66.667 0.00 0.00 0.00 3.21
5213 5578 3.492353 CCTCCCCGCCATCCACAT 61.492 66.667 0.00 0.00 0.00 3.21
5215 5580 4.489771 CACCTCCCCGCCATCCAC 62.490 72.222 0.00 0.00 0.00 4.02
5218 5583 4.489771 CACCACCTCCCCGCCATC 62.490 72.222 0.00 0.00 0.00 3.51
5224 5589 4.048470 GAAGCCCACCACCTCCCC 62.048 72.222 0.00 0.00 0.00 4.81
5225 5590 4.410400 CGAAGCCCACCACCTCCC 62.410 72.222 0.00 0.00 0.00 4.30
5226 5591 4.410400 CCGAAGCCCACCACCTCC 62.410 72.222 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.