Multiple sequence alignment - TraesCS7A01G483700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G483700 chr7A 100.000 5192 0 0 954 6145 675227916 675233107 0.000000e+00 9588.0
1 TraesCS7A01G483700 chr7A 88.984 935 61 22 3373 4294 630247595 630246690 0.000000e+00 1118.0
2 TraesCS7A01G483700 chr7A 87.580 934 76 22 3373 4294 305700484 305699579 0.000000e+00 1046.0
3 TraesCS7A01G483700 chr7A 100.000 409 0 0 1 409 675226963 675227371 0.000000e+00 756.0
4 TraesCS7A01G483700 chr7D 91.223 2461 122 39 2735 5162 584855877 584853478 0.000000e+00 3262.0
5 TraesCS7A01G483700 chr7D 86.986 1944 113 52 2222 4093 92810801 92808926 0.000000e+00 2060.0
6 TraesCS7A01G483700 chr7D 91.561 948 50 8 5215 6145 584853405 584852471 0.000000e+00 1280.0
7 TraesCS7A01G483700 chr7D 85.643 1198 111 24 1534 2689 584857019 584855841 0.000000e+00 1203.0
8 TraesCS7A01G483700 chr7D 84.890 728 63 18 1113 1816 92811399 92810695 0.000000e+00 691.0
9 TraesCS7A01G483700 chr7D 89.083 458 33 9 1007 1452 584857467 584857015 2.500000e-153 553.0
10 TraesCS7A01G483700 chr7D 84.062 389 29 18 37 409 584858115 584857744 1.640000e-90 344.0
11 TraesCS7A01G483700 chr7D 88.780 205 9 5 205 409 92811664 92811474 7.960000e-59 239.0
12 TraesCS7A01G483700 chr7D 91.667 48 2 2 4118 4164 92808925 92808879 1.430000e-06 65.8
13 TraesCS7A01G483700 chr7B 89.625 2477 132 63 2738 5162 653019761 653017358 0.000000e+00 3035.0
14 TraesCS7A01G483700 chr7B 88.663 1032 91 17 1672 2689 653020747 653019728 0.000000e+00 1234.0
15 TraesCS7A01G483700 chr7B 88.330 934 68 24 3373 4294 660062062 660062966 0.000000e+00 1083.0
16 TraesCS7A01G483700 chr7B 93.548 434 20 4 5280 5705 653017206 653016773 1.870000e-179 640.0
17 TraesCS7A01G483700 chr7B 92.760 442 15 6 1004 1437 653021349 653020917 1.880000e-174 623.0
18 TraesCS7A01G483700 chr7B 92.023 351 20 5 5802 6145 653016771 653016422 2.570000e-133 486.0
19 TraesCS7A01G483700 chr6A 87.723 953 73 26 3373 4312 546621493 546620572 0.000000e+00 1072.0
20 TraesCS7A01G483700 chr6A 84.051 790 80 15 1057 1816 376682742 376681969 0.000000e+00 719.0
21 TraesCS7A01G483700 chr6A 93.165 395 25 2 3445 3838 376681312 376680919 4.130000e-161 579.0
22 TraesCS7A01G483700 chr6A 81.370 730 77 21 2222 2905 376682075 376681359 1.950000e-149 540.0
23 TraesCS7A01G483700 chr2D 91.713 724 31 13 3131 3838 87982323 87981613 0.000000e+00 977.0
24 TraesCS7A01G483700 chr2D 86.398 794 60 16 1053 1816 87983372 87982597 0.000000e+00 824.0
25 TraesCS7A01G483700 chr2D 79.430 491 85 12 2888 3370 536921734 536921252 3.550000e-87 333.0
26 TraesCS7A01G483700 chr6B 91.603 655 26 13 3053 3691 173904643 173905284 0.000000e+00 878.0
27 TraesCS7A01G483700 chr1B 86.434 715 57 17 1053 1742 621200615 621201314 0.000000e+00 747.0
28 TraesCS7A01G483700 chr1B 81.476 691 65 29 2222 2866 621201285 621201958 5.500000e-140 508.0
29 TraesCS7A01G483700 chr2B 79.381 485 87 9 2888 3364 638971189 638970710 4.590000e-86 329.0
30 TraesCS7A01G483700 chr2B 81.226 261 44 5 3119 3377 89555882 89556139 8.070000e-49 206.0
31 TraesCS7A01G483700 chr2A 78.819 491 88 13 2888 3370 679512407 679511925 3.570000e-82 316.0
32 TraesCS7A01G483700 chr2A 81.226 261 44 5 3119 3377 58003168 58003425 8.070000e-49 206.0
33 TraesCS7A01G483700 chr2A 89.474 114 9 2 212 325 97848607 97848497 2.310000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G483700 chr7A 675226963 675233107 6144 False 5172.000000 9588 100.000000 1 6145 2 chr7A.!!$F1 6144
1 TraesCS7A01G483700 chr7A 630246690 630247595 905 True 1118.000000 1118 88.984000 3373 4294 1 chr7A.!!$R2 921
2 TraesCS7A01G483700 chr7A 305699579 305700484 905 True 1046.000000 1046 87.580000 3373 4294 1 chr7A.!!$R1 921
3 TraesCS7A01G483700 chr7D 584852471 584858115 5644 True 1328.400000 3262 88.314400 37 6145 5 chr7D.!!$R2 6108
4 TraesCS7A01G483700 chr7D 92808879 92811664 2785 True 763.950000 2060 88.080750 205 4164 4 chr7D.!!$R1 3959
5 TraesCS7A01G483700 chr7B 653016422 653021349 4927 True 1203.600000 3035 91.323800 1004 6145 5 chr7B.!!$R1 5141
6 TraesCS7A01G483700 chr7B 660062062 660062966 904 False 1083.000000 1083 88.330000 3373 4294 1 chr7B.!!$F1 921
7 TraesCS7A01G483700 chr6A 546620572 546621493 921 True 1072.000000 1072 87.723000 3373 4312 1 chr6A.!!$R1 939
8 TraesCS7A01G483700 chr6A 376680919 376682742 1823 True 612.666667 719 86.195333 1057 3838 3 chr6A.!!$R2 2781
9 TraesCS7A01G483700 chr2D 87981613 87983372 1759 True 900.500000 977 89.055500 1053 3838 2 chr2D.!!$R2 2785
10 TraesCS7A01G483700 chr6B 173904643 173905284 641 False 878.000000 878 91.603000 3053 3691 1 chr6B.!!$F1 638
11 TraesCS7A01G483700 chr1B 621200615 621201958 1343 False 627.500000 747 83.955000 1053 2866 2 chr1B.!!$F1 1813

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
993 1012 0.031314 TCCATTGATCGAGCTCGCTC 59.969 55.0 30.97 29.49 39.60 5.03 F
1745 1995 0.313987 GGCGACTTTTCTTGGTTGGG 59.686 55.0 0.00 0.00 0.00 4.12 F
2413 2720 0.504384 CTTCACTGTCTGCGTCAACG 59.496 55.0 0.00 0.00 43.27 4.10 F
3900 4279 0.108585 AGGGTTTGACGTGATGCTGT 59.891 50.0 0.00 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2471 2778 0.033366 TGTACTGCGTGCATGTCTGT 59.967 50.0 7.93 11.79 0.00 3.41 R
3006 3337 1.174783 TGAGCTTGTCGAGGTACCTC 58.825 55.0 29.18 29.18 35.91 3.85 R
4031 4410 0.033504 TCTTGTCTGACCGGCAGTTC 59.966 55.0 20.54 16.03 45.14 3.01 R
5756 6229 0.254178 GGTGATGCTCCACTGTCCAT 59.746 55.0 8.51 0.00 37.24 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.896443 GGTGAGGCCGAGAAGAGG 59.104 66.667 0.00 0.00 0.00 3.69
24 25 4.900154 CCGAGAAGAGGCTCACAC 57.100 61.111 18.26 7.35 34.56 3.82
25 26 1.216710 CCGAGAAGAGGCTCACACC 59.783 63.158 18.26 2.40 34.56 4.16
26 27 1.216710 CGAGAAGAGGCTCACACCC 59.783 63.158 18.26 0.76 34.56 4.61
27 28 1.536073 CGAGAAGAGGCTCACACCCA 61.536 60.000 18.26 0.00 34.56 4.51
28 29 0.248843 GAGAAGAGGCTCACACCCAG 59.751 60.000 18.26 0.00 35.01 4.45
29 30 1.197430 AGAAGAGGCTCACACCCAGG 61.197 60.000 18.26 0.00 0.00 4.45
30 31 2.811542 GAAGAGGCTCACACCCAGGC 62.812 65.000 18.26 0.00 36.69 4.85
31 32 4.416738 GAGGCTCACACCCAGGCC 62.417 72.222 10.25 0.00 44.38 5.19
33 34 4.729918 GGCTCACACCCAGGCCAG 62.730 72.222 5.01 0.00 43.59 4.85
34 35 3.958860 GCTCACACCCAGGCCAGT 61.959 66.667 5.01 0.00 0.00 4.00
35 36 2.033141 CTCACACCCAGGCCAGTG 59.967 66.667 16.49 16.49 39.93 3.66
87 88 0.031585 TGGGTTCTCGAGACAACACG 59.968 55.000 16.36 0.00 0.00 4.49
92 93 0.110509 TCTCGAGACAACACGTACGC 60.111 55.000 16.72 0.00 0.00 4.42
154 158 1.667830 TCGCGCTCTGTTTTCCTGG 60.668 57.895 5.56 0.00 0.00 4.45
171 175 0.102481 TGGCTCGGCTTAACTCGATC 59.898 55.000 0.00 0.00 34.77 3.69
174 185 0.744874 CTCGGCTTAACTCGATCCCA 59.255 55.000 0.00 0.00 34.77 4.37
180 191 3.385577 GCTTAACTCGATCCCATCTCAC 58.614 50.000 0.00 0.00 0.00 3.51
184 195 6.573289 GCTTAACTCGATCCCATCTCACATAT 60.573 42.308 0.00 0.00 0.00 1.78
189 200 6.484643 ACTCGATCCCATCTCACATATTTTTG 59.515 38.462 0.00 0.00 0.00 2.44
190 201 5.239306 TCGATCCCATCTCACATATTTTTGC 59.761 40.000 0.00 0.00 0.00 3.68
191 202 5.240183 CGATCCCATCTCACATATTTTTGCT 59.760 40.000 0.00 0.00 0.00 3.91
196 207 5.745294 CCATCTCACATATTTTTGCTTTCCG 59.255 40.000 0.00 0.00 0.00 4.30
198 209 5.007034 TCTCACATATTTTTGCTTTCCGGA 58.993 37.500 0.00 0.00 0.00 5.14
199 210 5.123820 TCTCACATATTTTTGCTTTCCGGAG 59.876 40.000 3.34 0.00 0.00 4.63
248 259 2.203070 CCTACCCCGAGCATGCAC 60.203 66.667 21.98 13.43 0.00 4.57
354 373 3.680920 TTCCCGCCTCTCTCCCCTC 62.681 68.421 0.00 0.00 0.00 4.30
365 384 1.694525 CTCCCCTCCCCTTCCCTTC 60.695 68.421 0.00 0.00 0.00 3.46
366 385 2.696504 CCCCTCCCCTTCCCTTCC 60.697 72.222 0.00 0.00 0.00 3.46
367 386 2.696504 CCCTCCCCTTCCCTTCCC 60.697 72.222 0.00 0.00 0.00 3.97
368 387 2.461637 CCTCCCCTTCCCTTCCCT 59.538 66.667 0.00 0.00 0.00 4.20
369 388 1.230314 CCTCCCCTTCCCTTCCCTT 60.230 63.158 0.00 0.00 0.00 3.95
370 389 1.575447 CCTCCCCTTCCCTTCCCTTG 61.575 65.000 0.00 0.00 0.00 3.61
371 390 2.216782 CTCCCCTTCCCTTCCCTTGC 62.217 65.000 0.00 0.00 0.00 4.01
372 391 2.360585 CCCTTCCCTTCCCTTGCC 59.639 66.667 0.00 0.00 0.00 4.52
373 392 2.241659 CCCTTCCCTTCCCTTGCCT 61.242 63.158 0.00 0.00 0.00 4.75
374 393 1.776969 CCTTCCCTTCCCTTGCCTT 59.223 57.895 0.00 0.00 0.00 4.35
392 411 2.731976 CCTTGCACGTCACTTAAGACTC 59.268 50.000 10.09 0.00 36.38 3.36
394 413 3.446310 TGCACGTCACTTAAGACTCAA 57.554 42.857 10.09 0.00 36.38 3.02
970 989 2.029073 CCGGCGGTGCTATTCGAT 59.971 61.111 19.97 0.00 0.00 3.59
971 990 2.022129 CCGGCGGTGCTATTCGATC 61.022 63.158 19.97 0.00 0.00 3.69
972 991 2.365068 CGGCGGTGCTATTCGATCG 61.365 63.158 9.36 9.36 0.00 3.69
973 992 2.022129 GGCGGTGCTATTCGATCGG 61.022 63.158 16.41 0.00 0.00 4.18
974 993 1.299926 GCGGTGCTATTCGATCGGT 60.300 57.895 16.41 7.22 0.00 4.69
975 994 1.276145 GCGGTGCTATTCGATCGGTC 61.276 60.000 16.41 0.95 0.00 4.79
976 995 0.663568 CGGTGCTATTCGATCGGTCC 60.664 60.000 16.41 6.64 0.00 4.46
977 996 0.387929 GGTGCTATTCGATCGGTCCA 59.612 55.000 16.41 3.18 0.00 4.02
978 997 1.000955 GGTGCTATTCGATCGGTCCAT 59.999 52.381 16.41 5.36 0.00 3.41
979 998 2.548067 GGTGCTATTCGATCGGTCCATT 60.548 50.000 16.41 0.00 0.00 3.16
980 999 2.476619 GTGCTATTCGATCGGTCCATTG 59.523 50.000 16.41 5.16 0.00 2.82
981 1000 2.364002 TGCTATTCGATCGGTCCATTGA 59.636 45.455 16.41 0.00 0.00 2.57
982 1001 3.006859 TGCTATTCGATCGGTCCATTGAT 59.993 43.478 16.41 0.24 0.00 2.57
983 1002 3.614616 GCTATTCGATCGGTCCATTGATC 59.385 47.826 16.41 0.00 38.08 2.92
990 1009 2.892305 GGTCCATTGATCGAGCTCG 58.108 57.895 30.03 30.03 41.45 5.03
991 1010 1.218230 GGTCCATTGATCGAGCTCGC 61.218 60.000 30.97 18.37 39.60 5.03
992 1011 0.249238 GTCCATTGATCGAGCTCGCT 60.249 55.000 30.97 22.71 39.60 4.93
993 1012 0.031314 TCCATTGATCGAGCTCGCTC 59.969 55.000 30.97 29.49 39.60 5.03
1001 1020 2.583593 GAGCTCGCTCGCGGAAAT 60.584 61.111 6.13 0.00 40.25 2.17
1002 1021 2.864931 GAGCTCGCTCGCGGAAATG 61.865 63.158 6.13 0.00 40.25 2.32
1312 1343 1.760479 CGGAGGTACACCCACCACAA 61.760 60.000 11.18 0.00 41.40 3.33
1317 1354 0.949105 GTACACCCACCACAAGCTCG 60.949 60.000 0.00 0.00 0.00 5.03
1318 1355 2.725203 TACACCCACCACAAGCTCGC 62.725 60.000 0.00 0.00 0.00 5.03
1319 1356 3.560251 ACCCACCACAAGCTCGCT 61.560 61.111 0.00 0.00 0.00 4.93
1320 1357 2.743928 CCCACCACAAGCTCGCTC 60.744 66.667 0.00 0.00 0.00 5.03
1335 1372 4.712191 CTCGCTCAGCAATTATCTTCAG 57.288 45.455 0.00 0.00 0.00 3.02
1336 1373 2.868583 TCGCTCAGCAATTATCTTCAGC 59.131 45.455 0.00 0.00 0.00 4.26
1337 1374 2.871022 CGCTCAGCAATTATCTTCAGCT 59.129 45.455 0.00 0.00 35.63 4.24
1377 1423 5.237996 TGATTTGATCGATTGATTCTGGCTC 59.762 40.000 0.00 0.00 34.09 4.70
1406 1461 1.002624 TCACGGGGAAGACATTGCC 60.003 57.895 0.00 0.00 45.80 4.52
1419 1474 4.733371 TTGCCGATGCGCGACTGA 62.733 61.111 12.10 0.00 44.57 3.41
1422 1477 2.407616 CCGATGCGCGACTGACTA 59.592 61.111 12.10 0.00 44.57 2.59
1439 1621 4.002982 TGACTATGCGAGCTTGAATTGTT 58.997 39.130 10.06 0.00 0.00 2.83
1502 1684 2.488153 GGTGATGTGTTAACTGGGAAGC 59.512 50.000 7.22 0.00 0.00 3.86
1503 1685 3.412386 GTGATGTGTTAACTGGGAAGCT 58.588 45.455 7.22 0.00 0.00 3.74
1505 1687 4.392138 GTGATGTGTTAACTGGGAAGCTAC 59.608 45.833 7.22 0.00 0.00 3.58
1506 1688 4.286032 TGATGTGTTAACTGGGAAGCTACT 59.714 41.667 7.22 0.00 0.00 2.57
1507 1689 4.002906 TGTGTTAACTGGGAAGCTACTG 57.997 45.455 7.22 0.00 0.00 2.74
1508 1690 3.244422 TGTGTTAACTGGGAAGCTACTGG 60.244 47.826 7.22 0.00 0.00 4.00
1509 1691 2.304761 TGTTAACTGGGAAGCTACTGGG 59.695 50.000 7.22 0.00 0.00 4.45
1532 1725 7.450634 TGGGAGTAGTACTAATACATTAGCCTG 59.549 40.741 14.26 0.00 42.66 4.85
1546 1739 4.524316 TTAGCCTGTTACGTACACATGT 57.476 40.909 0.00 0.00 32.10 3.21
1566 1759 9.075519 CACATGTTAATTAATTTAGTGCTGGTG 57.924 33.333 5.91 2.60 0.00 4.17
1570 1763 8.952278 TGTTAATTAATTTAGTGCTGGTGGTAG 58.048 33.333 5.91 0.00 0.00 3.18
1579 1772 8.921353 TTTAGTGCTGGTGGTAGTATTTTAAA 57.079 30.769 0.00 0.00 0.00 1.52
1744 1994 1.001378 CAGGCGACTTTTCTTGGTTGG 60.001 52.381 0.00 0.00 40.21 3.77
1745 1995 0.313987 GGCGACTTTTCTTGGTTGGG 59.686 55.000 0.00 0.00 0.00 4.12
1816 2068 3.636282 AGGTACCAAATTCAAACGCAC 57.364 42.857 15.94 0.00 0.00 5.34
1845 2097 1.592400 CTGCTCGACGGTGGAGGTAA 61.592 60.000 19.67 0.00 32.10 2.85
1872 2124 6.701340 ACACACTTTTGATGATGCTAGTCTA 58.299 36.000 0.00 0.00 0.00 2.59
1888 2140 9.664332 ATGCTAGTCTATGATTTGCCTTATTAG 57.336 33.333 0.00 0.00 0.00 1.73
1889 2144 8.651389 TGCTAGTCTATGATTTGCCTTATTAGT 58.349 33.333 0.00 0.00 0.00 2.24
1943 2198 7.198390 ACTGTTGAAGTTCATGTCAAAATGAG 58.802 34.615 6.36 0.00 37.83 2.90
1969 2236 4.997565 ACTCATGTTTAATTGATTGCCGG 58.002 39.130 0.00 0.00 0.00 6.13
1983 2250 1.941812 GCCGGTGATTTATGGCGAG 59.058 57.895 1.90 0.00 37.81 5.03
1987 2254 3.199677 CCGGTGATTTATGGCGAGTTTA 58.800 45.455 0.00 0.00 0.00 2.01
2001 2268 6.112734 TGGCGAGTTTATGTCAATATCTTGT 58.887 36.000 0.00 0.00 33.87 3.16
2016 2283 7.275779 TCAATATCTTGTTAAACGTCAGAGCTC 59.724 37.037 5.27 5.27 33.87 4.09
2037 2304 5.036117 TCTGCTATTGATGGGTTAAGTCC 57.964 43.478 0.00 0.00 0.00 3.85
2092 2359 3.572604 ACTTTAGTGCCACTAGTCGTC 57.427 47.619 4.51 0.00 31.47 4.20
2175 2446 6.533367 TGTGATCACAACTTTTTAAAACTGCC 59.467 34.615 26.02 0.00 38.56 4.85
2217 2488 3.876274 TTCTGATCTGCTAGTGGTCAC 57.124 47.619 0.00 0.00 0.00 3.67
2219 2490 2.757314 TCTGATCTGCTAGTGGTCACTG 59.243 50.000 13.32 5.32 42.52 3.66
2231 2502 3.325135 AGTGGTCACTGGAAAAGGTAGAG 59.675 47.826 2.46 0.00 40.75 2.43
2237 2508 2.303311 ACTGGAAAAGGTAGAGTCAGGC 59.697 50.000 0.00 0.00 0.00 4.85
2238 2509 2.303022 CTGGAAAAGGTAGAGTCAGGCA 59.697 50.000 0.00 0.00 0.00 4.75
2264 2537 8.425577 ACTTTTCTTGGTCGAATATCATGTAG 57.574 34.615 0.00 0.00 0.00 2.74
2266 2539 4.883083 TCTTGGTCGAATATCATGTAGCC 58.117 43.478 0.00 0.00 0.00 3.93
2275 2548 6.992123 TCGAATATCATGTAGCCAGTCAAAAT 59.008 34.615 0.00 0.00 0.00 1.82
2399 2706 9.525826 AATATTTCCCTGATGGATTATCTTCAC 57.474 33.333 0.00 0.00 44.66 3.18
2413 2720 0.504384 CTTCACTGTCTGCGTCAACG 59.496 55.000 0.00 0.00 43.27 4.10
2425 2732 3.132160 TGCGTCAACGGTTTCAGATAAA 58.868 40.909 4.54 0.00 40.23 1.40
2452 2759 1.476833 GCCTGACAGTTCTGAACCCAA 60.477 52.381 16.48 0.49 0.00 4.12
2471 2778 6.177610 ACCCAAAAAGCGAAATGAGTAGATA 58.822 36.000 0.00 0.00 0.00 1.98
2482 2789 6.074623 CGAAATGAGTAGATACAGACATGCAC 60.075 42.308 0.00 0.00 0.00 4.57
2507 2822 5.175126 GCAGTACACACTTATTATACAGCCG 59.825 44.000 0.00 0.00 30.46 5.52
2522 2837 1.000827 CAGCCGTTGCATTTGTTGGTA 60.001 47.619 0.00 0.00 41.13 3.25
2535 2850 6.206438 GCATTTGTTGGTACCCATTTCATTTT 59.794 34.615 10.07 0.00 31.53 1.82
2545 2860 4.183101 CCCATTTCATTTTGATCCAACCG 58.817 43.478 0.00 0.00 0.00 4.44
2626 2941 3.006217 GCAATTCCTTCAAGCCAAAGACT 59.994 43.478 0.00 0.00 0.00 3.24
2644 2959 1.696336 ACTGCATCAGACAGACCAACT 59.304 47.619 0.29 0.00 38.55 3.16
2660 2975 4.848357 ACCAACTATCTGTCCAATCCTTG 58.152 43.478 0.00 0.00 0.00 3.61
2671 2986 6.319658 TCTGTCCAATCCTTGCTTGATTAATC 59.680 38.462 8.60 8.60 31.42 1.75
2672 2987 5.360714 TGTCCAATCCTTGCTTGATTAATCC 59.639 40.000 12.90 0.00 31.42 3.01
2689 3004 6.933514 TTAATCCCCAAGCAAAGAAAGAAT 57.066 33.333 0.00 0.00 0.00 2.40
2691 3006 4.871933 TCCCCAAGCAAAGAAAGAATTC 57.128 40.909 0.00 0.00 35.70 2.17
2692 3007 3.255642 TCCCCAAGCAAAGAAAGAATTCG 59.744 43.478 0.00 0.00 40.63 3.34
2693 3008 3.255642 CCCCAAGCAAAGAAAGAATTCGA 59.744 43.478 0.00 0.00 40.63 3.71
2694 3009 4.229876 CCCAAGCAAAGAAAGAATTCGAC 58.770 43.478 0.00 0.00 40.63 4.20
2695 3010 4.261572 CCCAAGCAAAGAAAGAATTCGACA 60.262 41.667 0.00 0.00 40.63 4.35
2696 3011 5.464168 CCAAGCAAAGAAAGAATTCGACAT 58.536 37.500 0.00 0.00 40.63 3.06
2697 3012 5.922544 CCAAGCAAAGAAAGAATTCGACATT 59.077 36.000 0.00 0.00 40.63 2.71
2698 3013 6.421801 CCAAGCAAAGAAAGAATTCGACATTT 59.578 34.615 0.00 0.00 40.63 2.32
2722 3048 5.423015 TCCTTCAAGCATCAGATCAACTAC 58.577 41.667 0.00 0.00 0.00 2.73
2723 3049 5.188555 TCCTTCAAGCATCAGATCAACTACT 59.811 40.000 0.00 0.00 0.00 2.57
2724 3050 6.381133 TCCTTCAAGCATCAGATCAACTACTA 59.619 38.462 0.00 0.00 0.00 1.82
2800 3126 7.490962 TCCACACTTTCATTTTGTGTAGTAG 57.509 36.000 0.00 0.00 42.19 2.57
2804 3130 9.646336 CACACTTTCATTTTGTGTAGTAGTAAC 57.354 33.333 0.00 0.00 42.19 2.50
2805 3131 9.386010 ACACTTTCATTTTGTGTAGTAGTAACA 57.614 29.630 0.00 0.00 42.26 2.41
2829 3160 9.840427 ACAAATAAAAAGATGAATTCTGGTACG 57.160 29.630 7.05 0.00 33.93 3.67
2848 3179 3.606687 ACGGAACCCTAGCTGTAAATTG 58.393 45.455 0.00 0.00 0.00 2.32
2880 3211 1.289109 CTGGCGTTTGTACTGTCCCG 61.289 60.000 0.00 0.00 0.00 5.14
3129 3464 2.743928 GTGAAGCTGGACTGGCGG 60.744 66.667 0.00 0.00 34.52 6.13
3438 3789 2.950781 TGGCAAGGAACAATGTGGTTA 58.049 42.857 0.00 0.00 0.00 2.85
3439 3790 2.625790 TGGCAAGGAACAATGTGGTTAC 59.374 45.455 0.00 0.00 31.46 2.50
3440 3791 2.029380 GGCAAGGAACAATGTGGTTACC 60.029 50.000 0.00 0.00 31.68 2.85
3853 4222 4.175489 GCTGGCTGTCGCTGCATG 62.175 66.667 0.00 0.00 36.29 4.06
3854 4223 4.175489 CTGGCTGTCGCTGCATGC 62.175 66.667 11.82 11.82 36.09 4.06
3894 4273 0.391597 GAGGTGAGGGTTTGACGTGA 59.608 55.000 0.00 0.00 0.00 4.35
3897 4276 0.517316 GTGAGGGTTTGACGTGATGC 59.483 55.000 0.00 0.00 0.00 3.91
3898 4277 0.396435 TGAGGGTTTGACGTGATGCT 59.604 50.000 0.00 0.00 0.00 3.79
3900 4279 0.108585 AGGGTTTGACGTGATGCTGT 59.891 50.000 0.00 0.00 0.00 4.40
3901 4280 0.951558 GGGTTTGACGTGATGCTGTT 59.048 50.000 0.00 0.00 0.00 3.16
3902 4281 1.334960 GGGTTTGACGTGATGCTGTTG 60.335 52.381 0.00 0.00 0.00 3.33
4031 4410 2.159198 CCAAGGCCTTCATTTCCATTCG 60.159 50.000 17.29 0.00 0.00 3.34
4093 4474 1.074752 GACGAGCTTTTCTCTGCAGG 58.925 55.000 15.13 4.77 39.70 4.85
4298 4686 4.874970 TCGATAACGCTAGGGAAAATACC 58.125 43.478 14.59 0.00 39.58 2.73
4318 4706 2.261671 CGGAGGTTCACGGTGAGG 59.738 66.667 11.14 0.00 0.00 3.86
4319 4707 2.571216 CGGAGGTTCACGGTGAGGT 61.571 63.158 11.14 0.00 0.00 3.85
4320 4708 1.752833 GGAGGTTCACGGTGAGGTT 59.247 57.895 11.14 0.73 0.00 3.50
4321 4709 0.971386 GGAGGTTCACGGTGAGGTTA 59.029 55.000 11.14 0.00 0.00 2.85
4323 4711 1.342174 GAGGTTCACGGTGAGGTTACA 59.658 52.381 11.14 0.00 0.00 2.41
4324 4712 1.975680 AGGTTCACGGTGAGGTTACAT 59.024 47.619 11.14 1.50 0.00 2.29
4325 4713 2.073816 GGTTCACGGTGAGGTTACATG 58.926 52.381 11.14 0.00 0.00 3.21
4327 4715 3.135994 GTTCACGGTGAGGTTACATGTT 58.864 45.455 11.14 0.00 0.00 2.71
4328 4716 3.478857 TCACGGTGAGGTTACATGTTT 57.521 42.857 6.76 0.00 0.00 2.83
4329 4717 3.135225 TCACGGTGAGGTTACATGTTTG 58.865 45.455 6.76 0.00 0.00 2.93
4330 4718 1.877443 ACGGTGAGGTTACATGTTTGC 59.123 47.619 2.30 0.00 0.00 3.68
4331 4719 2.151202 CGGTGAGGTTACATGTTTGCT 58.849 47.619 2.30 0.00 0.00 3.91
4332 4720 2.159627 CGGTGAGGTTACATGTTTGCTC 59.840 50.000 2.30 0.00 0.00 4.26
4333 4721 2.159627 GGTGAGGTTACATGTTTGCTCG 59.840 50.000 2.30 0.00 0.00 5.03
4334 4722 3.064207 GTGAGGTTACATGTTTGCTCGA 58.936 45.455 2.30 0.00 0.00 4.04
4335 4723 3.064207 TGAGGTTACATGTTTGCTCGAC 58.936 45.455 2.30 0.00 0.00 4.20
4340 4728 4.261031 GGTTACATGTTTGCTCGACTGTTT 60.261 41.667 2.30 0.00 0.00 2.83
4343 4731 3.128589 ACATGTTTGCTCGACTGTTTGTT 59.871 39.130 0.00 0.00 0.00 2.83
4437 4825 2.186903 CCGCCTGCTCGGTACAAT 59.813 61.111 0.00 0.00 44.18 2.71
4450 4838 2.764572 CGGTACAATACAACCTCCTCCT 59.235 50.000 0.00 0.00 33.34 3.69
4461 4849 1.273896 ACCTCCTCCTTCCCCTACTTG 60.274 57.143 0.00 0.00 0.00 3.16
4496 4891 6.301687 GTTTCACTTAGGAAACCTCTGAAC 57.698 41.667 12.24 0.00 46.88 3.18
4511 4906 4.452825 CTCTGAACCTCATCGTCTACCTA 58.547 47.826 0.00 0.00 0.00 3.08
4512 4907 5.050126 TCTGAACCTCATCGTCTACCTAT 57.950 43.478 0.00 0.00 0.00 2.57
4513 4908 4.822350 TCTGAACCTCATCGTCTACCTATG 59.178 45.833 0.00 0.00 0.00 2.23
4514 4909 4.788679 TGAACCTCATCGTCTACCTATGA 58.211 43.478 0.00 0.00 0.00 2.15
4539 4934 4.081198 CCTATCCATGATCTCTGCTAACCC 60.081 50.000 0.00 0.00 0.00 4.11
4541 4936 3.321039 TCCATGATCTCTGCTAACCCAT 58.679 45.455 0.00 0.00 0.00 4.00
4545 4940 5.314529 CATGATCTCTGCTAACCCATGAAT 58.685 41.667 0.00 0.00 33.72 2.57
4546 4941 4.711399 TGATCTCTGCTAACCCATGAATG 58.289 43.478 0.00 0.00 0.00 2.67
4550 4945 2.026641 CTGCTAACCCATGAATGGTGG 58.973 52.381 8.49 0.00 46.65 4.61
4551 4946 1.357420 TGCTAACCCATGAATGGTGGT 59.643 47.619 8.49 1.74 46.65 4.16
4552 4947 1.750778 GCTAACCCATGAATGGTGGTG 59.249 52.381 8.49 0.00 46.65 4.17
4636 5031 1.334239 CGAAGGTAAGATCTCGCTCCG 60.334 57.143 0.00 0.00 0.00 4.63
4639 5034 1.734137 GTAAGATCTCGCTCCGCCA 59.266 57.895 0.00 0.00 0.00 5.69
4649 5045 2.187946 CTCCGCCAATTCCTCGCT 59.812 61.111 0.00 0.00 0.00 4.93
4659 5055 0.453793 ATTCCTCGCTGAGACTGACG 59.546 55.000 7.07 0.00 0.00 4.35
5004 5404 3.951775 AGAAGACCTCTAGTGCAACAG 57.048 47.619 0.00 0.00 41.43 3.16
5005 5405 2.564947 AGAAGACCTCTAGTGCAACAGG 59.435 50.000 0.00 0.00 41.43 4.00
5006 5406 1.270907 AGACCTCTAGTGCAACAGGG 58.729 55.000 0.00 0.00 41.43 4.45
5007 5407 0.391793 GACCTCTAGTGCAACAGGGC 60.392 60.000 0.00 0.00 41.43 5.19
5008 5408 1.127567 ACCTCTAGTGCAACAGGGCA 61.128 55.000 0.00 0.00 41.43 5.36
5145 5548 1.156645 GCATGCTCCAGACGCCTAAG 61.157 60.000 11.37 0.00 0.00 2.18
5147 5550 0.978146 ATGCTCCAGACGCCTAAGGT 60.978 55.000 0.00 0.00 0.00 3.50
5148 5551 0.323999 TGCTCCAGACGCCTAAGGTA 60.324 55.000 0.00 0.00 0.00 3.08
5150 5553 1.413077 GCTCCAGACGCCTAAGGTAAT 59.587 52.381 0.00 0.00 0.00 1.89
5151 5554 2.546162 GCTCCAGACGCCTAAGGTAATC 60.546 54.545 0.00 0.00 0.00 1.75
5154 5557 3.516300 TCCAGACGCCTAAGGTAATCAAA 59.484 43.478 0.00 0.00 0.00 2.69
5155 5558 4.163458 TCCAGACGCCTAAGGTAATCAAAT 59.837 41.667 0.00 0.00 0.00 2.32
5156 5559 4.511826 CCAGACGCCTAAGGTAATCAAATC 59.488 45.833 0.00 0.00 0.00 2.17
5157 5560 5.116180 CAGACGCCTAAGGTAATCAAATCA 58.884 41.667 0.00 0.00 0.00 2.57
5158 5561 5.760253 CAGACGCCTAAGGTAATCAAATCAT 59.240 40.000 0.00 0.00 0.00 2.45
5159 5562 6.260936 CAGACGCCTAAGGTAATCAAATCATT 59.739 38.462 0.00 0.00 0.00 2.57
5160 5563 6.483640 AGACGCCTAAGGTAATCAAATCATTC 59.516 38.462 0.00 0.00 0.00 2.67
5161 5564 6.119536 ACGCCTAAGGTAATCAAATCATTCA 58.880 36.000 0.00 0.00 0.00 2.57
5162 5565 6.601613 ACGCCTAAGGTAATCAAATCATTCAA 59.398 34.615 0.00 0.00 0.00 2.69
5163 5566 6.912591 CGCCTAAGGTAATCAAATCATTCAAC 59.087 38.462 0.00 0.00 0.00 3.18
5164 5567 7.415095 CGCCTAAGGTAATCAAATCATTCAACA 60.415 37.037 0.00 0.00 0.00 3.33
5165 5568 7.917505 GCCTAAGGTAATCAAATCATTCAACAG 59.082 37.037 0.00 0.00 0.00 3.16
5166 5569 9.177608 CCTAAGGTAATCAAATCATTCAACAGA 57.822 33.333 0.00 0.00 0.00 3.41
5189 5625 7.226325 CAGATGAATTGTTTTTGGGCACTAAAA 59.774 33.333 4.11 4.11 46.65 1.52
5204 5640 5.047377 GGCACTAAAACATCCCTGAAAATGA 60.047 40.000 0.00 0.00 0.00 2.57
5205 5641 6.351286 GGCACTAAAACATCCCTGAAAATGAT 60.351 38.462 0.00 0.00 0.00 2.45
5206 5642 7.099120 GCACTAAAACATCCCTGAAAATGATT 58.901 34.615 0.00 0.00 0.00 2.57
5207 5643 7.276438 GCACTAAAACATCCCTGAAAATGATTC 59.724 37.037 0.00 0.00 0.00 2.52
5208 5644 8.306038 CACTAAAACATCCCTGAAAATGATTCA 58.694 33.333 0.00 0.00 0.00 2.57
5209 5645 8.526147 ACTAAAACATCCCTGAAAATGATTCAG 58.474 33.333 10.48 10.48 44.05 3.02
5232 5668 3.243002 GCTTCTGCATCTTATGAACAGGC 60.243 47.826 10.34 5.46 39.41 4.85
5234 5670 3.954200 TCTGCATCTTATGAACAGGCAA 58.046 40.909 10.34 0.00 33.72 4.52
5235 5671 4.529897 TCTGCATCTTATGAACAGGCAAT 58.470 39.130 10.34 0.00 33.72 3.56
5243 5679 6.899089 TCTTATGAACAGGCAATAGATGGAA 58.101 36.000 0.00 0.00 0.00 3.53
5244 5680 7.345691 TCTTATGAACAGGCAATAGATGGAAA 58.654 34.615 0.00 0.00 0.00 3.13
5249 5685 4.870636 ACAGGCAATAGATGGAAAATGGA 58.129 39.130 0.00 0.00 0.00 3.41
5251 5687 5.537674 ACAGGCAATAGATGGAAAATGGATC 59.462 40.000 0.00 0.00 0.00 3.36
5256 5692 6.309357 CAATAGATGGAAAATGGATCTGGGA 58.691 40.000 0.00 0.00 0.00 4.37
5260 5696 4.606476 TGGAAAATGGATCTGGGAATGA 57.394 40.909 0.00 0.00 0.00 2.57
5274 5710 2.560105 GGGAATGAAAGCTTGCAGAGTT 59.440 45.455 13.80 2.05 0.00 3.01
5308 5759 2.224305 ACCCGGCAGATACTTTGCTATC 60.224 50.000 0.00 0.00 41.27 2.08
5396 5850 2.880963 GGTTTGTACAAAGCAAGGCA 57.119 45.000 34.28 6.92 45.25 4.75
5518 5972 6.899393 ACAAAGTGTGATGTACAATGGATT 57.101 33.333 0.00 0.00 41.89 3.01
5569 6023 9.621629 TCTGTCATTTTTAAGGTCTGTTTTCTA 57.378 29.630 0.00 0.00 0.00 2.10
5622 6080 7.203218 TCTACTGTGACATGTATCAATACTGC 58.797 38.462 0.00 0.00 34.41 4.40
5659 6125 5.359009 AGTTTCAGAATCAATGGTAGGCATG 59.641 40.000 0.00 0.00 0.00 4.06
5663 6129 2.742428 ATCAATGGTAGGCATGCAGT 57.258 45.000 21.36 8.63 0.00 4.40
5674 6140 2.756760 AGGCATGCAGTTGATAACTTGG 59.243 45.455 21.36 0.00 40.46 3.61
5738 6211 3.693245 CGTGAGCTACCATGCGTC 58.307 61.111 0.00 0.00 38.13 5.19
5747 6220 1.133598 CTACCATGCGTCGTCCTACAA 59.866 52.381 0.00 0.00 0.00 2.41
5756 6229 2.159156 CGTCGTCCTACAATCCATTCCA 60.159 50.000 0.00 0.00 0.00 3.53
5829 6302 3.624861 GTCCATGATGTGATTCTGGTGAC 59.375 47.826 0.00 0.00 0.00 3.67
5839 6312 2.507407 TTCTGGTGACCCTATTTGGC 57.493 50.000 0.00 0.00 0.00 4.52
5905 6385 7.037658 ACTCCCTTGCCAAATAAATACCATTTT 60.038 33.333 0.00 0.00 0.00 1.82
5951 6431 8.682936 ATGTGATCCATATTACAAGAGGAAAC 57.317 34.615 0.00 0.00 35.47 2.78
5963 6443 1.227853 AGGAAACAGACCACGCCAC 60.228 57.895 0.00 0.00 0.00 5.01
6027 6507 4.202326 GGTAAGAGAGTTTCAGGGTTGTCA 60.202 45.833 0.00 0.00 0.00 3.58
6044 6524 2.160615 TGTCATAAACAAATGGCGACGG 59.839 45.455 0.00 0.00 34.08 4.79
6065 6545 5.882557 ACGGCACTTCTAGAATCAAAATGAT 59.117 36.000 5.44 0.00 39.09 2.45
6131 6611 8.107095 TGATTTTATTTGTCTAACTACCAGCCT 58.893 33.333 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.896443 CCTCTTCTCGGCCTCACC 59.104 66.667 0.00 0.00 0.00 4.02
1 2 2.185608 GCCTCTTCTCGGCCTCAC 59.814 66.667 0.00 0.00 41.73 3.51
7 8 1.216710 GGTGTGAGCCTCTTCTCGG 59.783 63.158 0.00 0.00 35.90 4.63
8 9 1.216710 GGGTGTGAGCCTCTTCTCG 59.783 63.158 0.00 0.00 35.90 4.04
9 10 0.248843 CTGGGTGTGAGCCTCTTCTC 59.751 60.000 0.00 0.00 36.53 2.87
10 11 1.197430 CCTGGGTGTGAGCCTCTTCT 61.197 60.000 0.00 0.00 36.53 2.85
11 12 1.298014 CCTGGGTGTGAGCCTCTTC 59.702 63.158 0.00 0.00 36.53 2.87
12 13 2.900106 GCCTGGGTGTGAGCCTCTT 61.900 63.158 0.00 0.00 36.53 2.85
13 14 3.325753 GCCTGGGTGTGAGCCTCT 61.326 66.667 0.00 0.00 36.53 3.69
14 15 4.416738 GGCCTGGGTGTGAGCCTC 62.417 72.222 0.00 0.00 42.34 4.70
16 17 4.729918 CTGGCCTGGGTGTGAGCC 62.730 72.222 3.32 0.00 45.96 4.70
17 18 3.958860 ACTGGCCTGGGTGTGAGC 61.959 66.667 14.82 0.00 0.00 4.26
18 19 2.033141 CACTGGCCTGGGTGTGAG 59.967 66.667 14.82 0.00 32.72 3.51
19 20 2.447572 TCACTGGCCTGGGTGTGA 60.448 61.111 12.15 11.08 37.14 3.58
20 21 2.281761 GTCACTGGCCTGGGTGTG 60.282 66.667 12.15 9.03 35.26 3.82
21 22 3.941188 CGTCACTGGCCTGGGTGT 61.941 66.667 12.15 0.00 35.26 4.16
22 23 3.596066 CTCGTCACTGGCCTGGGTG 62.596 68.421 12.15 13.70 35.06 4.61
23 24 3.314331 CTCGTCACTGGCCTGGGT 61.314 66.667 12.15 1.13 0.00 4.51
24 25 4.767255 GCTCGTCACTGGCCTGGG 62.767 72.222 14.82 10.46 0.00 4.45
25 26 4.007644 TGCTCGTCACTGGCCTGG 62.008 66.667 14.82 4.64 0.00 4.45
26 27 2.740055 GTGCTCGTCACTGGCCTG 60.740 66.667 8.29 8.29 42.38 4.85
27 28 4.008933 GGTGCTCGTCACTGGCCT 62.009 66.667 3.32 0.00 44.98 5.19
30 31 4.742201 CGGGGTGCTCGTCACTGG 62.742 72.222 9.61 0.00 44.98 4.00
31 32 4.742201 CCGGGGTGCTCGTCACTG 62.742 72.222 0.00 2.52 44.98 3.66
46 47 1.372499 TCGAGTCTTGTTTCGGCCG 60.372 57.895 22.12 22.12 37.42 6.13
87 88 1.624323 GTGAGATTCGCGTGCGTAC 59.376 57.895 14.47 7.00 40.74 3.67
154 158 0.597898 GGGATCGAGTTAAGCCGAGC 60.598 60.000 6.23 6.23 40.05 5.03
171 175 6.044682 GGAAAGCAAAAATATGTGAGATGGG 58.955 40.000 0.00 0.00 0.00 4.00
174 185 5.652014 TCCGGAAAGCAAAAATATGTGAGAT 59.348 36.000 0.00 0.00 0.00 2.75
180 191 4.202050 CCTCCTCCGGAAAGCAAAAATATG 60.202 45.833 5.23 0.00 0.00 1.78
184 195 1.144093 TCCTCCTCCGGAAAGCAAAAA 59.856 47.619 5.23 0.00 0.00 1.94
196 207 1.587043 GCGCACCTTTTTCCTCCTCC 61.587 60.000 0.30 0.00 0.00 4.30
198 209 1.603739 GGCGCACCTTTTTCCTCCT 60.604 57.895 10.83 0.00 0.00 3.69
199 210 2.962569 GGCGCACCTTTTTCCTCC 59.037 61.111 10.83 0.00 0.00 4.30
284 296 1.067669 TGTGTCTGTCTCTCTGTGTGC 59.932 52.381 0.00 0.00 0.00 4.57
354 373 2.360585 GCAAGGGAAGGGAAGGGG 59.639 66.667 0.00 0.00 0.00 4.79
365 384 2.594303 TGACGTGCAAGGCAAGGG 60.594 61.111 5.42 0.00 41.94 3.95
366 385 1.447317 AAGTGACGTGCAAGGCAAGG 61.447 55.000 10.63 0.00 41.94 3.61
367 386 1.225855 TAAGTGACGTGCAAGGCAAG 58.774 50.000 10.63 2.65 41.47 4.01
368 387 1.601903 CTTAAGTGACGTGCAAGGCAA 59.398 47.619 10.63 0.00 41.47 4.52
369 388 1.202592 TCTTAAGTGACGTGCAAGGCA 60.203 47.619 3.22 3.22 35.60 4.75
370 389 1.194772 GTCTTAAGTGACGTGCAAGGC 59.805 52.381 4.26 0.23 0.00 4.35
371 390 2.731976 GAGTCTTAAGTGACGTGCAAGG 59.268 50.000 4.26 0.00 41.47 3.61
372 391 3.381045 TGAGTCTTAAGTGACGTGCAAG 58.619 45.455 0.00 0.00 41.47 4.01
373 392 3.446310 TGAGTCTTAAGTGACGTGCAA 57.554 42.857 0.00 0.00 41.47 4.08
374 393 3.120792 GTTGAGTCTTAAGTGACGTGCA 58.879 45.455 0.00 0.00 41.47 4.57
953 972 2.022129 GATCGAATAGCACCGCCGG 61.022 63.158 0.00 0.00 0.00 6.13
954 973 2.365068 CGATCGAATAGCACCGCCG 61.365 63.158 10.26 0.00 0.00 6.46
955 974 2.022129 CCGATCGAATAGCACCGCC 61.022 63.158 18.66 0.00 0.00 6.13
956 975 1.276145 GACCGATCGAATAGCACCGC 61.276 60.000 18.66 0.00 0.00 5.68
957 976 0.663568 GGACCGATCGAATAGCACCG 60.664 60.000 18.66 0.00 0.00 4.94
958 977 0.387929 TGGACCGATCGAATAGCACC 59.612 55.000 18.66 9.06 0.00 5.01
959 978 2.440539 ATGGACCGATCGAATAGCAC 57.559 50.000 18.66 0.00 0.00 4.40
960 979 2.364002 TCAATGGACCGATCGAATAGCA 59.636 45.455 18.66 0.00 0.00 3.49
961 980 3.026630 TCAATGGACCGATCGAATAGC 57.973 47.619 18.66 0.36 0.00 2.97
968 987 1.000283 AGCTCGATCAATGGACCGATC 60.000 52.381 0.00 0.00 35.67 3.69
969 988 1.000283 GAGCTCGATCAATGGACCGAT 60.000 52.381 0.00 0.00 0.00 4.18
970 989 0.385751 GAGCTCGATCAATGGACCGA 59.614 55.000 0.00 0.00 0.00 4.69
971 990 0.936764 CGAGCTCGATCAATGGACCG 60.937 60.000 32.06 0.00 43.02 4.79
972 991 1.218230 GCGAGCTCGATCAATGGACC 61.218 60.000 38.74 13.56 43.02 4.46
973 992 0.249238 AGCGAGCTCGATCAATGGAC 60.249 55.000 38.74 17.58 43.02 4.02
974 993 2.119009 AGCGAGCTCGATCAATGGA 58.881 52.632 38.74 0.00 43.02 3.41
975 994 4.746361 AGCGAGCTCGATCAATGG 57.254 55.556 38.74 8.52 43.02 3.16
984 1003 2.583593 ATTTCCGCGAGCGAGCTC 60.584 61.111 19.72 14.61 42.83 4.09
985 1004 2.887568 CATTTCCGCGAGCGAGCT 60.888 61.111 19.72 0.00 42.83 4.09
986 1005 3.929948 CCATTTCCGCGAGCGAGC 61.930 66.667 19.72 0.00 42.83 5.03
987 1006 3.264897 CCCATTTCCGCGAGCGAG 61.265 66.667 19.72 9.17 42.83 5.03
988 1007 4.077184 ACCCATTTCCGCGAGCGA 62.077 61.111 19.72 0.00 42.83 4.93
989 1008 3.864686 CACCCATTTCCGCGAGCG 61.865 66.667 8.23 10.86 39.44 5.03
990 1009 3.508840 CCACCCATTTCCGCGAGC 61.509 66.667 8.23 0.00 0.00 5.03
991 1010 3.508840 GCCACCCATTTCCGCGAG 61.509 66.667 8.23 0.00 0.00 5.03
996 1015 3.508840 CTCGCGCCACCCATTTCC 61.509 66.667 0.00 0.00 0.00 3.13
997 1016 3.508840 CCTCGCGCCACCCATTTC 61.509 66.667 0.00 0.00 0.00 2.17
1304 1335 2.031012 TGAGCGAGCTTGTGGTGG 59.969 61.111 2.14 0.00 0.00 4.61
1317 1354 4.083908 GCTAGCTGAAGATAATTGCTGAGC 60.084 45.833 7.70 0.00 35.47 4.26
1318 1355 4.451774 GGCTAGCTGAAGATAATTGCTGAG 59.548 45.833 15.72 0.00 35.47 3.35
1319 1356 4.141642 TGGCTAGCTGAAGATAATTGCTGA 60.142 41.667 15.72 0.00 35.47 4.26
1320 1357 4.132336 TGGCTAGCTGAAGATAATTGCTG 58.868 43.478 15.72 0.00 35.47 4.41
1334 1371 1.133976 CAGCAGGGTTAATGGCTAGCT 60.134 52.381 15.72 0.00 34.25 3.32
1335 1372 1.134098 TCAGCAGGGTTAATGGCTAGC 60.134 52.381 6.04 6.04 34.25 3.42
1336 1373 3.498774 ATCAGCAGGGTTAATGGCTAG 57.501 47.619 0.00 0.00 34.25 3.42
1337 1374 3.951563 AATCAGCAGGGTTAATGGCTA 57.048 42.857 0.00 0.00 34.25 3.93
1377 1423 1.227556 CCCCGTGAGAATTAGCCGG 60.228 63.158 0.00 0.00 38.39 6.13
1406 1461 1.870268 GCATAGTCAGTCGCGCATCG 61.870 60.000 8.75 0.00 40.15 3.84
1419 1474 3.062639 CGAACAATTCAAGCTCGCATAGT 59.937 43.478 0.00 0.00 0.00 2.12
1420 1475 3.306973 TCGAACAATTCAAGCTCGCATAG 59.693 43.478 0.00 0.00 0.00 2.23
1421 1476 3.062099 GTCGAACAATTCAAGCTCGCATA 59.938 43.478 0.00 0.00 0.00 3.14
1422 1477 2.076100 TCGAACAATTCAAGCTCGCAT 58.924 42.857 0.00 0.00 0.00 4.73
1439 1621 1.514657 CGGCACCGTAAATCGTCGA 60.515 57.895 0.00 0.00 37.94 4.20
1457 1639 7.436970 ACCGATGGAAAAATAAATAAATTCGGC 59.563 33.333 0.00 0.00 37.04 5.54
1467 1649 6.582677 ACACATCACCGATGGAAAAATAAA 57.417 33.333 8.71 0.00 43.60 1.40
1468 1650 6.582677 AACACATCACCGATGGAAAAATAA 57.417 33.333 8.71 0.00 43.60 1.40
1469 1651 7.392113 AGTTAACACATCACCGATGGAAAAATA 59.608 33.333 8.61 0.00 43.60 1.40
1470 1652 6.208599 AGTTAACACATCACCGATGGAAAAAT 59.791 34.615 8.61 0.00 43.60 1.82
1503 1685 9.512588 GCTAATGTATTAGTACTACTCCCAGTA 57.487 37.037 0.91 1.88 41.34 2.74
1505 1687 7.670559 AGGCTAATGTATTAGTACTACTCCCAG 59.329 40.741 0.91 0.00 41.34 4.45
1506 1688 7.450634 CAGGCTAATGTATTAGTACTACTCCCA 59.549 40.741 0.91 0.00 41.34 4.37
1507 1689 7.450944 ACAGGCTAATGTATTAGTACTACTCCC 59.549 40.741 0.91 3.98 41.34 4.30
1508 1690 8.406730 ACAGGCTAATGTATTAGTACTACTCC 57.593 38.462 0.91 4.54 41.34 3.85
1514 1707 9.387123 GTACGTAACAGGCTAATGTATTAGTAC 57.613 37.037 11.95 6.84 41.34 2.73
1523 1716 4.868171 ACATGTGTACGTAACAGGCTAATG 59.132 41.667 16.75 11.09 39.29 1.90
1563 1756 7.748691 TCAACAGGTTTAAAATACTACCACC 57.251 36.000 0.00 0.00 33.02 4.61
1579 1772 8.589338 GTTGGAGATATATCTACATCAACAGGT 58.411 37.037 25.21 0.00 46.56 4.00
1635 1830 0.611896 CCTTTCCCCACCGCAGATTT 60.612 55.000 0.00 0.00 0.00 2.17
1663 1894 5.278604 ACACGGCAAAAGTTATCTTTGTTC 58.721 37.500 0.00 0.00 42.26 3.18
1665 1896 4.911514 ACACGGCAAAAGTTATCTTTGT 57.088 36.364 0.00 0.00 42.26 2.83
1666 1897 4.679654 GGAACACGGCAAAAGTTATCTTTG 59.320 41.667 0.00 0.00 42.26 2.77
1667 1898 4.339814 TGGAACACGGCAAAAGTTATCTTT 59.660 37.500 0.00 0.00 44.59 2.52
1668 1899 3.886505 TGGAACACGGCAAAAGTTATCTT 59.113 39.130 0.00 0.00 35.14 2.40
1744 1994 1.904287 TTGGCCACTTACATGACACC 58.096 50.000 3.88 0.00 0.00 4.16
1745 1995 4.314740 TTTTTGGCCACTTACATGACAC 57.685 40.909 3.88 0.00 0.00 3.67
1816 2068 3.535691 GTCGAGCAGTAGGACGATG 57.464 57.895 0.00 0.00 37.14 3.84
1835 2087 5.766174 TCAAAAGTGTGTATTTACCTCCACC 59.234 40.000 0.00 0.00 0.00 4.61
1845 2097 7.826252 AGACTAGCATCATCAAAAGTGTGTATT 59.174 33.333 0.00 0.00 0.00 1.89
1872 2124 7.330262 CCAAAACCACTAATAAGGCAAATCAT 58.670 34.615 0.00 0.00 0.00 2.45
1888 2140 5.393461 CCTCATGAGAATTAGCCAAAACCAC 60.393 44.000 24.62 0.00 0.00 4.16
1889 2144 4.706476 CCTCATGAGAATTAGCCAAAACCA 59.294 41.667 24.62 0.00 0.00 3.67
1943 2198 7.379529 CCGGCAATCAATTAAACATGAGTAATC 59.620 37.037 0.00 0.00 0.00 1.75
1952 2207 5.398603 AATCACCGGCAATCAATTAAACA 57.601 34.783 0.00 0.00 0.00 2.83
1957 2212 4.740334 GCCATAAATCACCGGCAATCAATT 60.740 41.667 0.00 0.00 44.25 2.32
1969 2236 6.358118 TGACATAAACTCGCCATAAATCAC 57.642 37.500 0.00 0.00 0.00 3.06
1987 2254 8.771920 TCTGACGTTTAACAAGATATTGACAT 57.228 30.769 7.16 0.00 0.00 3.06
2001 2268 4.720649 ATAGCAGAGCTCTGACGTTTAA 57.279 40.909 41.20 19.92 46.59 1.52
2016 2283 4.780815 TGGACTTAACCCATCAATAGCAG 58.219 43.478 0.00 0.00 0.00 4.24
2037 2304 8.190122 TGTTTGCCTATTTAAGATTAGCACATG 58.810 33.333 0.00 0.00 0.00 3.21
2109 2376 2.787473 TGGAGACCAATCCACATCAC 57.213 50.000 0.00 0.00 44.56 3.06
2175 2446 0.535797 GTGAACTCCCTTCCCCTACG 59.464 60.000 0.00 0.00 0.00 3.51
2217 2488 2.303022 TGCCTGACTCTACCTTTTCCAG 59.697 50.000 0.00 0.00 0.00 3.86
2219 2490 3.075148 GTTGCCTGACTCTACCTTTTCC 58.925 50.000 0.00 0.00 0.00 3.13
2231 2502 2.287009 CGACCAAGAAAAGTTGCCTGAC 60.287 50.000 0.00 0.00 0.00 3.51
2237 2508 7.530010 ACATGATATTCGACCAAGAAAAGTTG 58.470 34.615 0.00 0.00 33.43 3.16
2238 2509 7.687941 ACATGATATTCGACCAAGAAAAGTT 57.312 32.000 0.00 0.00 33.43 2.66
2264 2537 6.088085 CGTCACTATTCAAAATTTTGACTGGC 59.912 38.462 28.78 20.85 45.99 4.85
2266 2539 8.781067 TTCGTCACTATTCAAAATTTTGACTG 57.219 30.769 28.78 22.46 45.99 3.51
2380 2674 5.071519 AGACAGTGAAGATAATCCATCAGGG 59.928 44.000 0.00 0.00 35.96 4.45
2399 2706 0.232303 GAAACCGTTGACGCAGACAG 59.768 55.000 0.00 0.00 38.18 3.51
2413 2720 2.101415 GGCCAGGCATTTATCTGAAACC 59.899 50.000 15.19 0.00 33.11 3.27
2425 2732 1.001641 GAACTGTCAGGCCAGGCAT 60.002 57.895 15.19 1.92 36.75 4.40
2452 2759 7.097192 TGTCTGTATCTACTCATTTCGCTTTT 58.903 34.615 0.00 0.00 0.00 2.27
2471 2778 0.033366 TGTACTGCGTGCATGTCTGT 59.967 50.000 7.93 11.79 0.00 3.41
2482 2789 5.175126 GGCTGTATAATAAGTGTGTACTGCG 59.825 44.000 0.00 0.00 39.55 5.18
2522 2837 4.322650 CGGTTGGATCAAAATGAAATGGGT 60.323 41.667 0.00 0.00 0.00 4.51
2535 2850 1.004320 CGTTGGGACGGTTGGATCA 60.004 57.895 0.00 0.00 45.32 2.92
2545 2860 1.003839 TGATCAGGTGCGTTGGGAC 60.004 57.895 0.00 0.00 0.00 4.46
2626 2941 3.771479 AGATAGTTGGTCTGTCTGATGCA 59.229 43.478 0.00 0.00 41.83 3.96
2653 2968 4.882559 TGGGGATTAATCAAGCAAGGATT 58.117 39.130 17.07 0.00 38.46 3.01
2671 2986 3.255642 TCGAATTCTTTCTTTGCTTGGGG 59.744 43.478 3.52 0.00 0.00 4.96
2672 2987 4.229876 GTCGAATTCTTTCTTTGCTTGGG 58.770 43.478 3.52 0.00 0.00 4.12
2689 3004 4.518590 TGATGCTTGAAGGAAAATGTCGAA 59.481 37.500 0.00 0.00 0.00 3.71
2691 3006 4.154737 TCTGATGCTTGAAGGAAAATGTCG 59.845 41.667 0.00 0.00 0.00 4.35
2692 3007 5.633830 TCTGATGCTTGAAGGAAAATGTC 57.366 39.130 0.00 0.00 0.00 3.06
2693 3008 5.713389 TGATCTGATGCTTGAAGGAAAATGT 59.287 36.000 0.00 0.00 0.00 2.71
2694 3009 6.203808 TGATCTGATGCTTGAAGGAAAATG 57.796 37.500 0.00 0.00 0.00 2.32
2695 3010 6.436532 AGTTGATCTGATGCTTGAAGGAAAAT 59.563 34.615 0.00 0.00 0.00 1.82
2696 3011 5.771666 AGTTGATCTGATGCTTGAAGGAAAA 59.228 36.000 0.00 0.00 0.00 2.29
2697 3012 5.319453 AGTTGATCTGATGCTTGAAGGAAA 58.681 37.500 0.00 0.00 0.00 3.13
2698 3013 4.914983 AGTTGATCTGATGCTTGAAGGAA 58.085 39.130 0.00 0.00 0.00 3.36
2722 3048 7.278135 TCAAGGAAGGATGATGAAACAGATAG 58.722 38.462 0.00 0.00 0.00 2.08
2723 3049 7.199167 TCAAGGAAGGATGATGAAACAGATA 57.801 36.000 0.00 0.00 0.00 1.98
2724 3050 6.070951 TCAAGGAAGGATGATGAAACAGAT 57.929 37.500 0.00 0.00 0.00 2.90
2804 3130 9.289303 CCGTACCAGAATTCATCTTTTTATTTG 57.711 33.333 8.44 0.00 35.73 2.32
2805 3131 9.238368 TCCGTACCAGAATTCATCTTTTTATTT 57.762 29.630 8.44 0.00 35.73 1.40
2806 3132 8.801882 TCCGTACCAGAATTCATCTTTTTATT 57.198 30.769 8.44 0.00 35.73 1.40
2829 3160 4.585879 TGTCAATTTACAGCTAGGGTTCC 58.414 43.478 0.00 0.00 0.00 3.62
2848 3179 2.774439 ACGCCAGTCAAATTGTTGTC 57.226 45.000 0.00 0.00 36.07 3.18
2880 3211 2.161486 CGCGAAGTAGCACTCTGGC 61.161 63.158 0.00 0.00 36.85 4.85
3006 3337 1.174783 TGAGCTTGTCGAGGTACCTC 58.825 55.000 29.18 29.18 35.91 3.85
3007 3338 1.272769 GTTGAGCTTGTCGAGGTACCT 59.727 52.381 16.26 16.26 35.91 3.08
3102 3433 1.669115 CAGCTTCACCACCACCTCG 60.669 63.158 0.00 0.00 0.00 4.63
3345 3681 2.981560 GCCGTGGTTGATGCACTGG 61.982 63.158 0.00 0.00 0.00 4.00
3438 3789 2.525877 AGTACCTGCACACCCGGT 60.526 61.111 0.00 0.00 34.86 5.28
3439 3790 2.047274 CAGTACCTGCACACCCGG 60.047 66.667 0.00 0.00 0.00 5.73
3850 4219 0.811219 TCGCCGGAGAAATCTGCATG 60.811 55.000 5.05 0.00 33.58 4.06
3852 4221 1.447838 GTCGCCGGAGAAATCTGCA 60.448 57.895 10.32 0.00 33.58 4.41
3853 4222 2.517450 CGTCGCCGGAGAAATCTGC 61.517 63.158 10.32 0.00 0.00 4.26
3854 4223 3.693245 CGTCGCCGGAGAAATCTG 58.307 61.111 10.32 0.00 0.00 2.90
3873 4252 0.680061 ACGTCAAACCCTCACCTCTC 59.320 55.000 0.00 0.00 0.00 3.20
3894 4273 1.363443 CACGCCCAAACAACAGCAT 59.637 52.632 0.00 0.00 0.00 3.79
3897 4276 1.299316 CTGCACGCCCAAACAACAG 60.299 57.895 0.00 0.00 0.00 3.16
3898 4277 2.780094 CCTGCACGCCCAAACAACA 61.780 57.895 0.00 0.00 0.00 3.33
3900 4279 3.222855 CCCTGCACGCCCAAACAA 61.223 61.111 0.00 0.00 0.00 2.83
3901 4280 3.723097 TTCCCTGCACGCCCAAACA 62.723 57.895 0.00 0.00 0.00 2.83
3902 4281 2.909965 TTCCCTGCACGCCCAAAC 60.910 61.111 0.00 0.00 0.00 2.93
4031 4410 0.033504 TCTTGTCTGACCGGCAGTTC 59.966 55.000 20.54 16.03 45.14 3.01
4093 4474 1.687494 GCACTCGTTCGTCTCCATGC 61.687 60.000 0.00 0.00 0.00 4.06
4312 4700 2.159627 CGAGCAAACATGTAACCTCACC 59.840 50.000 0.00 0.00 0.00 4.02
4315 4703 3.123621 CAGTCGAGCAAACATGTAACCTC 59.876 47.826 0.00 4.21 0.00 3.85
4316 4704 3.067106 CAGTCGAGCAAACATGTAACCT 58.933 45.455 0.00 0.00 0.00 3.50
4317 4705 2.806244 ACAGTCGAGCAAACATGTAACC 59.194 45.455 0.00 0.00 0.00 2.85
4318 4706 4.468095 AACAGTCGAGCAAACATGTAAC 57.532 40.909 0.00 0.00 0.00 2.50
4319 4707 4.334203 ACAAACAGTCGAGCAAACATGTAA 59.666 37.500 0.00 0.00 0.00 2.41
4320 4708 3.874543 ACAAACAGTCGAGCAAACATGTA 59.125 39.130 0.00 0.00 0.00 2.29
4321 4709 2.682856 ACAAACAGTCGAGCAAACATGT 59.317 40.909 0.00 0.00 0.00 3.21
4323 4711 4.142491 TGAAACAAACAGTCGAGCAAACAT 60.142 37.500 0.00 0.00 0.00 2.71
4324 4712 3.189495 TGAAACAAACAGTCGAGCAAACA 59.811 39.130 0.00 0.00 0.00 2.83
4325 4713 3.753842 TGAAACAAACAGTCGAGCAAAC 58.246 40.909 0.00 0.00 0.00 2.93
4327 4715 2.223249 GCTGAAACAAACAGTCGAGCAA 60.223 45.455 0.00 0.00 37.64 3.91
4328 4716 1.330521 GCTGAAACAAACAGTCGAGCA 59.669 47.619 0.00 0.00 37.64 4.26
4329 4717 1.599542 AGCTGAAACAAACAGTCGAGC 59.400 47.619 0.00 0.00 37.64 5.03
4330 4718 2.609459 ACAGCTGAAACAAACAGTCGAG 59.391 45.455 23.35 0.00 37.64 4.04
4331 4719 2.627945 ACAGCTGAAACAAACAGTCGA 58.372 42.857 23.35 0.00 37.64 4.20
4332 4720 3.100817 CAACAGCTGAAACAAACAGTCG 58.899 45.455 23.35 0.00 37.64 4.18
4333 4721 3.119495 ACCAACAGCTGAAACAAACAGTC 60.119 43.478 23.35 0.00 37.64 3.51
4334 4722 2.825532 ACCAACAGCTGAAACAAACAGT 59.174 40.909 23.35 1.37 37.64 3.55
4335 4723 3.438360 GACCAACAGCTGAAACAAACAG 58.562 45.455 23.35 0.73 38.27 3.16
4340 4728 0.817634 CCGGACCAACAGCTGAAACA 60.818 55.000 23.35 0.00 0.00 2.83
4343 4731 2.429930 CCCGGACCAACAGCTGAA 59.570 61.111 23.35 0.00 0.00 3.02
4392 4780 3.787001 CTCCCCCTTGGTCTCCGC 61.787 72.222 0.00 0.00 34.77 5.54
4433 4821 2.576648 GGGAAGGAGGAGGTTGTATTGT 59.423 50.000 0.00 0.00 0.00 2.71
4434 4822 2.092375 GGGGAAGGAGGAGGTTGTATTG 60.092 54.545 0.00 0.00 0.00 1.90
4435 4823 2.206223 GGGGAAGGAGGAGGTTGTATT 58.794 52.381 0.00 0.00 0.00 1.89
4436 4824 1.369983 AGGGGAAGGAGGAGGTTGTAT 59.630 52.381 0.00 0.00 0.00 2.29
4437 4825 0.797579 AGGGGAAGGAGGAGGTTGTA 59.202 55.000 0.00 0.00 0.00 2.41
4450 4838 2.838202 CTGAAGGCTACAAGTAGGGGAA 59.162 50.000 9.12 0.00 33.87 3.97
4496 4891 4.145807 AGGTTCATAGGTAGACGATGAGG 58.854 47.826 0.00 0.00 41.32 3.86
4511 4906 4.845225 AGCAGAGATCATGGATAGGTTCAT 59.155 41.667 0.00 0.00 0.00 2.57
4512 4907 4.229639 AGCAGAGATCATGGATAGGTTCA 58.770 43.478 0.00 0.00 0.00 3.18
4513 4908 4.888326 AGCAGAGATCATGGATAGGTTC 57.112 45.455 0.00 0.00 0.00 3.62
4514 4909 5.012561 GGTTAGCAGAGATCATGGATAGGTT 59.987 44.000 0.00 0.00 0.00 3.50
4636 5031 0.107945 AGTCTCAGCGAGGAATTGGC 60.108 55.000 5.87 0.00 0.00 4.52
4639 5034 1.135257 CGTCAGTCTCAGCGAGGAATT 60.135 52.381 5.87 0.00 0.00 2.17
4649 5045 2.504367 TCATGTCTCACGTCAGTCTCA 58.496 47.619 0.00 0.00 0.00 3.27
4659 5055 2.293122 CCCTCTCTCGATCATGTCTCAC 59.707 54.545 0.00 0.00 0.00 3.51
4758 5154 1.675641 GTAGCTGCCCCAGGTGTTG 60.676 63.158 7.15 0.00 42.42 3.33
4912 5308 4.404073 CCTGAGCCTGTACTTGTAGAAGAT 59.596 45.833 6.63 0.00 32.98 2.40
5004 5404 1.476488 ACACACAGTCAGTTTTTGCCC 59.524 47.619 0.00 0.00 0.00 5.36
5005 5405 2.939460 ACACACAGTCAGTTTTTGCC 57.061 45.000 0.00 0.00 0.00 4.52
5006 5406 4.233789 TGAAACACACAGTCAGTTTTTGC 58.766 39.130 2.30 0.00 35.77 3.68
5007 5407 6.949578 AATGAAACACACAGTCAGTTTTTG 57.050 33.333 2.30 0.00 35.77 2.44
5008 5408 6.589907 GGAAATGAAACACACAGTCAGTTTTT 59.410 34.615 2.30 0.00 35.77 1.94
5159 5562 5.055812 GCCCAAAAACAATTCATCTGTTGA 58.944 37.500 0.00 0.00 37.10 3.18
5160 5563 4.815308 TGCCCAAAAACAATTCATCTGTTG 59.185 37.500 0.00 0.00 37.10 3.33
5161 5564 4.815846 GTGCCCAAAAACAATTCATCTGTT 59.184 37.500 0.00 0.00 38.65 3.16
5162 5565 4.101430 AGTGCCCAAAAACAATTCATCTGT 59.899 37.500 0.00 0.00 0.00 3.41
5163 5566 4.634199 AGTGCCCAAAAACAATTCATCTG 58.366 39.130 0.00 0.00 0.00 2.90
5164 5567 4.961438 AGTGCCCAAAAACAATTCATCT 57.039 36.364 0.00 0.00 0.00 2.90
5165 5568 7.011857 TGTTTTAGTGCCCAAAAACAATTCATC 59.988 33.333 14.33 0.00 46.82 2.92
5166 5569 6.825721 TGTTTTAGTGCCCAAAAACAATTCAT 59.174 30.769 14.33 0.00 46.82 2.57
5167 5570 6.173339 TGTTTTAGTGCCCAAAAACAATTCA 58.827 32.000 14.33 0.00 46.82 2.57
5168 5571 6.670077 TGTTTTAGTGCCCAAAAACAATTC 57.330 33.333 14.33 0.00 46.82 2.17
5174 5577 3.970640 AGGGATGTTTTAGTGCCCAAAAA 59.029 39.130 0.00 0.00 41.34 1.94
5179 5615 2.507407 TCAGGGATGTTTTAGTGCCC 57.493 50.000 0.00 0.00 39.12 5.36
5180 5616 4.864704 TTTTCAGGGATGTTTTAGTGCC 57.135 40.909 0.00 0.00 0.00 5.01
5204 5640 5.045012 TCATAAGATGCAGAAGCCTGAAT 57.955 39.130 0.00 0.00 41.41 2.57
5205 5641 4.492494 TCATAAGATGCAGAAGCCTGAA 57.508 40.909 0.00 0.00 43.02 3.02
5206 5642 4.194640 GTTCATAAGATGCAGAAGCCTGA 58.805 43.478 0.00 0.00 43.02 3.86
5207 5643 3.943381 TGTTCATAAGATGCAGAAGCCTG 59.057 43.478 0.00 0.00 43.22 4.85
5208 5644 4.197750 CTGTTCATAAGATGCAGAAGCCT 58.802 43.478 0.00 0.00 41.13 4.58
5209 5645 3.314635 CCTGTTCATAAGATGCAGAAGCC 59.685 47.826 0.00 0.00 41.13 4.35
5210 5646 3.243002 GCCTGTTCATAAGATGCAGAAGC 60.243 47.826 0.00 0.00 42.57 3.86
5211 5647 3.943381 TGCCTGTTCATAAGATGCAGAAG 59.057 43.478 0.00 0.00 32.34 2.85
5212 5648 3.954200 TGCCTGTTCATAAGATGCAGAA 58.046 40.909 0.00 0.00 32.34 3.02
5213 5649 3.632643 TGCCTGTTCATAAGATGCAGA 57.367 42.857 0.00 0.00 32.34 4.26
5232 5668 6.309357 TCCCAGATCCATTTTCCATCTATTG 58.691 40.000 0.00 0.00 0.00 1.90
5234 5670 6.535161 TTCCCAGATCCATTTTCCATCTAT 57.465 37.500 0.00 0.00 0.00 1.98
5235 5671 5.992564 TTCCCAGATCCATTTTCCATCTA 57.007 39.130 0.00 0.00 0.00 1.98
5243 5679 4.617593 AGCTTTCATTCCCAGATCCATTT 58.382 39.130 0.00 0.00 0.00 2.32
5244 5680 4.261411 AGCTTTCATTCCCAGATCCATT 57.739 40.909 0.00 0.00 0.00 3.16
5249 5685 2.758979 CTGCAAGCTTTCATTCCCAGAT 59.241 45.455 0.00 0.00 0.00 2.90
5251 5687 2.163815 CTCTGCAAGCTTTCATTCCCAG 59.836 50.000 0.00 0.00 0.00 4.45
5256 5692 5.266733 TGAAAACTCTGCAAGCTTTCATT 57.733 34.783 16.54 0.00 34.25 2.57
5260 5696 4.924305 TGATGAAAACTCTGCAAGCTTT 57.076 36.364 0.00 0.00 0.00 3.51
5274 5710 1.004862 TGCCGGGTATGGTTGATGAAA 59.995 47.619 2.18 0.00 0.00 2.69
5394 5848 1.078848 CTACAGCTCACCCCTGTGC 60.079 63.158 4.44 0.00 43.01 4.57
5396 5850 2.292257 TGTATCTACAGCTCACCCCTGT 60.292 50.000 0.00 0.00 44.99 4.00
5569 6023 0.911769 TGTTCCGATGAGGGCATTCT 59.088 50.000 0.00 0.00 41.52 2.40
5659 6125 7.097834 ACTAGAAGTACCAAGTTATCAACTGC 58.902 38.462 0.00 0.00 41.91 4.40
5663 6129 8.890410 ACCTACTAGAAGTACCAAGTTATCAA 57.110 34.615 0.00 0.00 0.00 2.57
5674 6140 4.883006 CCAGTGAGGACCTACTAGAAGTAC 59.117 50.000 0.00 0.00 41.22 2.73
5727 6200 0.736636 TGTAGGACGACGCATGGTAG 59.263 55.000 0.00 0.00 0.00 3.18
5756 6229 0.254178 GGTGATGCTCCACTGTCCAT 59.746 55.000 8.51 0.00 37.24 3.41
5829 6302 2.493278 CAAGTCTTGTGGCCAAATAGGG 59.507 50.000 7.24 0.00 38.09 3.53
5938 6418 3.724374 CGTGGTCTGTTTCCTCTTGTAA 58.276 45.455 0.00 0.00 0.00 2.41
5951 6431 0.740868 AATGATCGTGGCGTGGTCTG 60.741 55.000 0.00 0.00 0.00 3.51
5963 6443 6.370718 TGAGATAATGGATGCTTGAATGATCG 59.629 38.462 0.00 0.00 0.00 3.69
6010 6490 5.690865 TGTTTATGACAACCCTGAAACTCT 58.309 37.500 0.00 0.00 34.69 3.24
6027 6507 1.135517 GTGCCGTCGCCATTTGTTTAT 60.136 47.619 0.00 0.00 0.00 1.40
6065 6545 8.899887 ATTTCTTTTGGGAGATTTTCCTATCA 57.100 30.769 0.00 0.00 45.98 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.