Multiple sequence alignment - TraesCS7A01G483600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G483600 chr7A 100.000 4706 0 0 1 4706 675116896 675112191 0.000000e+00 8691.0
1 TraesCS7A01G483600 chr7A 88.571 140 11 2 4156 4290 246120390 246120251 1.050000e-36 165.0
2 TraesCS7A01G483600 chr7D 96.765 3679 63 20 1 3636 583480546 583476881 0.000000e+00 6083.0
3 TraesCS7A01G483600 chr7D 95.837 1081 23 7 3628 4706 583474537 583473477 0.000000e+00 1727.0
4 TraesCS7A01G483600 chr7D 89.081 925 91 10 2612 3532 583982285 583983203 0.000000e+00 1140.0
5 TraesCS7A01G483600 chr7D 83.379 734 99 11 1909 2625 583973400 583974127 0.000000e+00 658.0
6 TraesCS7A01G483600 chr7D 82.964 587 65 13 1876 2450 583989146 583988583 9.090000e-137 497.0
7 TraesCS7A01G483600 chr7D 76.049 739 161 10 2616 3349 583986470 583985743 2.070000e-98 370.0
8 TraesCS7A01G483600 chr7D 75.000 764 160 22 2578 3329 583965477 583964733 1.630000e-84 324.0
9 TraesCS7A01G483600 chr7D 88.889 243 19 6 3807 4046 583983351 583983588 4.610000e-75 292.0
10 TraesCS7A01G483600 chr7D 90.385 208 20 0 1362 1569 583972790 583972997 1.670000e-69 274.0
11 TraesCS7A01G483600 chr7D 93.976 166 9 1 1410 1575 583989673 583989509 2.810000e-62 250.0
12 TraesCS7A01G483600 chr7D 81.923 260 24 17 4468 4706 583983623 583983880 1.030000e-46 198.0
13 TraesCS7A01G483600 chr7D 89.313 131 13 1 1578 1708 583989458 583989329 3.770000e-36 163.0
14 TraesCS7A01G483600 chr7D 85.526 152 22 0 2448 2599 583988389 583988238 4.870000e-35 159.0
15 TraesCS7A01G483600 chr7B 86.115 2067 255 12 1293 3349 472397084 472395040 0.000000e+00 2198.0
16 TraesCS7A01G483600 chr7B 85.990 2020 253 11 1340 3349 472330168 472328169 0.000000e+00 2135.0
17 TraesCS7A01G483600 chr7B 87.461 1611 162 13 1876 3462 651336460 651338054 0.000000e+00 1820.0
18 TraesCS7A01G483600 chr7B 86.191 1709 174 23 1876 3535 651454045 651452350 0.000000e+00 1792.0
19 TraesCS7A01G483600 chr7B 82.941 1530 222 19 1827 3349 651341432 651339935 0.000000e+00 1343.0
20 TraesCS7A01G483600 chr7B 92.063 504 28 6 1295 1798 651341920 651341429 0.000000e+00 699.0
21 TraesCS7A01G483600 chr7B 76.971 647 130 13 2487 3125 651443714 651444349 7.490000e-93 351.0
22 TraesCS7A01G483600 chr7B 87.285 291 29 5 3759 4046 651452248 651451963 4.540000e-85 326.0
23 TraesCS7A01G483600 chr7B 90.533 169 12 3 3881 4046 472392791 472392958 2.200000e-53 220.0
24 TraesCS7A01G483600 chr7B 89.941 169 13 3 3881 4046 472325919 472326086 1.030000e-51 215.0
25 TraesCS7A01G483600 chr7B 81.609 261 24 18 4468 4706 651451932 651451674 1.340000e-45 195.0
26 TraesCS7A01G483600 chr7B 80.682 264 24 21 4468 4706 472326121 472326382 3.740000e-41 180.0
27 TraesCS7A01G483600 chr7B 80.682 264 24 21 4468 4706 472392994 472393255 3.740000e-41 180.0
28 TraesCS7A01G483600 chr7B 87.582 153 12 6 4142 4287 23653108 23653260 2.250000e-38 171.0
29 TraesCS7A01G483600 chr6A 87.013 1463 156 12 2016 3462 146502003 146500559 0.000000e+00 1618.0
30 TraesCS7A01G483600 chr6A 85.386 609 58 17 1394 1980 146502605 146502006 1.870000e-168 603.0
31 TraesCS7A01G483600 chr6A 80.381 525 59 18 2082 2599 146496315 146496802 4.480000e-95 359.0
32 TraesCS7A01G483600 chr6A 80.217 369 39 19 4369 4704 146499287 146498920 3.640000e-61 246.0
33 TraesCS7A01G483600 chr6A 84.211 209 18 4 3756 3964 146500361 146500168 6.220000e-44 189.0
34 TraesCS7A01G483600 chr4D 81.979 283 45 6 99 378 469325266 469324987 7.870000e-58 235.0
35 TraesCS7A01G483600 chr4D 90.000 80 8 0 4290 4369 21890424 21890503 2.320000e-18 104.0
36 TraesCS7A01G483600 chr4D 88.235 68 7 1 3682 3748 257407693 257407760 3.900000e-11 80.5
37 TraesCS7A01G483600 chr5D 84.513 226 25 3 4154 4369 505987309 505987534 1.030000e-51 215.0
38 TraesCS7A01G483600 chr5D 88.571 140 13 2 4154 4290 65198667 65198528 2.910000e-37 167.0
39 TraesCS7A01G483600 chr5D 83.146 89 12 3 3682 3769 125898343 125898429 1.400000e-10 78.7
40 TraesCS7A01G483600 chr5D 85.714 70 8 2 3682 3750 125912622 125912690 6.530000e-09 73.1
41 TraesCS7A01G483600 chr4B 81.328 241 29 4 4142 4368 12052400 12052162 1.040000e-41 182.0
42 TraesCS7A01G483600 chr5B 88.889 135 14 1 4154 4287 608221258 608221392 1.050000e-36 165.0
43 TraesCS7A01G483600 chr1B 84.663 163 21 4 4132 4290 655062020 655061858 4.870000e-35 159.0
44 TraesCS7A01G483600 chr1B 90.000 80 8 0 4290 4369 661438774 661438695 2.320000e-18 104.0
45 TraesCS7A01G483600 chr3B 84.431 167 14 5 4133 4287 115348496 115348330 2.270000e-33 154.0
46 TraesCS7A01G483600 chr2B 79.654 231 29 9 4154 4367 593159 593388 2.930000e-32 150.0
47 TraesCS7A01G483600 chr2A 91.250 80 7 0 4290 4369 752015084 752015163 4.980000e-20 110.0
48 TraesCS7A01G483600 chr2A 84.375 64 9 1 3686 3748 331572449 331572386 1.410000e-05 62.1
49 TraesCS7A01G483600 chr5A 90.244 82 8 0 3670 3751 475596095 475596014 1.790000e-19 108.0
50 TraesCS7A01G483600 chr2D 91.139 79 7 0 4290 4368 576863247 576863169 1.790000e-19 108.0
51 TraesCS7A01G483600 chr2D 84.337 83 13 0 3668 3750 624252771 624252689 1.090000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G483600 chr7A 675112191 675116896 4705 True 8691.000000 8691 100.000000 1 4706 1 chr7A.!!$R2 4705
1 TraesCS7A01G483600 chr7D 583473477 583480546 7069 True 3905.000000 6083 96.301000 1 4706 2 chr7D.!!$R2 4705
2 TraesCS7A01G483600 chr7D 583982285 583983880 1595 False 543.333333 1140 86.631000 2612 4706 3 chr7D.!!$F2 2094
3 TraesCS7A01G483600 chr7D 583972790 583974127 1337 False 466.000000 658 86.882000 1362 2625 2 chr7D.!!$F1 1263
4 TraesCS7A01G483600 chr7D 583964733 583965477 744 True 324.000000 324 75.000000 2578 3329 1 chr7D.!!$R1 751
5 TraesCS7A01G483600 chr7D 583985743 583989673 3930 True 287.800000 497 85.565600 1410 3349 5 chr7D.!!$R3 1939
6 TraesCS7A01G483600 chr7B 472395040 472397084 2044 True 2198.000000 2198 86.115000 1293 3349 1 chr7B.!!$R2 2056
7 TraesCS7A01G483600 chr7B 472328169 472330168 1999 True 2135.000000 2135 85.990000 1340 3349 1 chr7B.!!$R1 2009
8 TraesCS7A01G483600 chr7B 651336460 651338054 1594 False 1820.000000 1820 87.461000 1876 3462 1 chr7B.!!$F2 1586
9 TraesCS7A01G483600 chr7B 651339935 651341920 1985 True 1021.000000 1343 87.502000 1295 3349 2 chr7B.!!$R3 2054
10 TraesCS7A01G483600 chr7B 651451674 651454045 2371 True 771.000000 1792 85.028333 1876 4706 3 chr7B.!!$R4 2830
11 TraesCS7A01G483600 chr7B 651443714 651444349 635 False 351.000000 351 76.971000 2487 3125 1 chr7B.!!$F3 638
12 TraesCS7A01G483600 chr6A 146498920 146502605 3685 True 664.000000 1618 84.206750 1394 4704 4 chr6A.!!$R1 3310

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.032615 AAAACTTGTGGGTGCCTCCA 60.033 50.000 0.00 0.00 38.11 3.86 F
435 453 0.465460 GCCGGCCCATGTTCTTGATA 60.465 55.000 18.11 0.00 0.00 2.15 F
1319 1339 1.307866 GTCTCCCCCAATCCCCAGA 60.308 63.158 0.00 0.00 0.00 3.86 F
2034 2277 1.300311 CGAGTGGGCAACGTACACA 60.300 57.895 12.88 2.82 37.58 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1715 1787 0.523072 ATCGCATCTTTGCCACACAC 59.477 50.0 0.00 0.0 46.57 3.82 R
1717 1789 2.352503 AAATCGCATCTTTGCCACAC 57.647 45.0 0.00 0.0 46.57 3.82 R
2502 2966 1.570857 TTGGTGGGAGCGGGATCAAT 61.571 55.0 0.00 0.0 0.00 2.57 R
3728 8357 0.177836 TAGTGCGGATGACATGTGGG 59.822 55.0 1.15 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.032615 AAAACTTGTGGGTGCCTCCA 60.033 50.000 0.00 0.00 38.11 3.86
32 33 4.087892 CCTCCAGGCACCCAGACG 62.088 72.222 0.00 0.00 0.00 4.18
45 46 1.608283 CCCAGACGAAAAGAGGTCCAC 60.608 57.143 0.00 0.00 33.66 4.02
68 69 1.639628 ACCCGGACTCCTAAGAGAAGA 59.360 52.381 0.73 0.00 43.39 2.87
69 70 2.245287 ACCCGGACTCCTAAGAGAAGAT 59.755 50.000 0.73 0.00 43.39 2.40
70 71 3.301274 CCCGGACTCCTAAGAGAAGATT 58.699 50.000 0.73 0.00 43.39 2.40
71 72 3.707102 CCCGGACTCCTAAGAGAAGATTT 59.293 47.826 0.73 0.00 43.39 2.17
100 117 1.524008 GAGGCCCAACACGAAAAGGG 61.524 60.000 0.00 0.00 44.37 3.95
168 185 8.301252 TCATAGCAACCACTCTTAATAGTACA 57.699 34.615 0.00 0.00 0.00 2.90
196 213 6.320418 TGTTCCTAGGACTCAAAAAGAAAACC 59.680 38.462 12.22 0.00 0.00 3.27
229 246 2.829120 TGAGTCACCGATGAACACCATA 59.171 45.455 0.00 0.00 36.31 2.74
247 265 8.429237 ACACCATATTTTCCCTTTTTGTATGA 57.571 30.769 0.00 0.00 0.00 2.15
254 272 3.103742 TCCCTTTTTGTATGAATGGGGC 58.896 45.455 7.65 0.00 40.25 5.80
258 276 4.956075 CCTTTTTGTATGAATGGGGCTACT 59.044 41.667 0.00 0.00 0.00 2.57
273 291 1.202009 GCTACTGACGTCCGTAGACAC 60.202 57.143 36.49 22.16 43.73 3.67
287 305 4.081862 CCGTAGACACAATAGAGGAACCAA 60.082 45.833 0.00 0.00 0.00 3.67
313 331 5.930569 GTCCTCAGATAAACTTACCAAACGT 59.069 40.000 0.00 0.00 0.00 3.99
314 332 6.090493 GTCCTCAGATAAACTTACCAAACGTC 59.910 42.308 0.00 0.00 0.00 4.34
435 453 0.465460 GCCGGCCCATGTTCTTGATA 60.465 55.000 18.11 0.00 0.00 2.15
571 589 7.596248 CGTTGATTGGAAAAGAAGTTCATGAAT 59.404 33.333 12.12 0.00 0.00 2.57
628 646 7.659390 AGTTCACCAATTTGAAAAACTTCAACA 59.341 29.630 0.00 0.00 40.29 3.33
1180 1200 1.805428 AAAATGCCTTCAACGCGCCT 61.805 50.000 5.73 0.00 0.00 5.52
1319 1339 1.307866 GTCTCCCCCAATCCCCAGA 60.308 63.158 0.00 0.00 0.00 3.86
1466 1490 2.286425 ATAGTGGCAGCACCCCCT 60.286 61.111 0.00 0.00 37.83 4.79
2034 2277 1.300311 CGAGTGGGCAACGTACACA 60.300 57.895 12.88 2.82 37.58 3.72
3141 5373 1.288932 AGCCCAGGCATTTTATCCACT 59.711 47.619 12.03 0.00 44.88 4.00
3387 5633 7.149192 CGCTGTAACTTGTAAGTGTTATTTTGC 60.149 37.037 0.00 0.00 39.66 3.68
3413 5659 5.413833 CCATAATTTAGTAGCATCAGGCCTG 59.586 44.000 27.87 27.87 46.50 4.85
3462 5708 3.008594 TGTCGTATCATTTTCAGGGTGGT 59.991 43.478 0.00 0.00 0.00 4.16
3636 5912 7.554835 TCGCTCTTGGTGTTGGTTTTATTATAT 59.445 33.333 0.00 0.00 0.00 0.86
3637 5913 8.832521 CGCTCTTGGTGTTGGTTTTATTATATA 58.167 33.333 0.00 0.00 0.00 0.86
3670 8299 6.923508 GTGTTCAATTGTTTAGAGAAAAGGGG 59.076 38.462 5.13 0.00 0.00 4.79
3728 8357 1.377725 CTGACATGTGGACCTGGCC 60.378 63.158 1.15 0.00 0.00 5.36
3739 8368 2.215451 GACCTGGCCCCACATGTCAT 62.215 60.000 0.00 0.00 36.44 3.06
3740 8369 1.454479 CCTGGCCCCACATGTCATC 60.454 63.158 0.00 0.00 0.00 2.92
3741 8370 1.454479 CTGGCCCCACATGTCATCC 60.454 63.158 0.00 0.00 0.00 3.51
3868 8497 5.713861 GGAGACCCAAGAGTTTGTACTAGTA 59.286 44.000 0.00 0.00 33.84 1.82
3870 8499 6.313324 AGACCCAAGAGTTTGTACTAGTACT 58.687 40.000 28.56 14.27 37.00 2.73
3901 8530 3.326588 TGTAGTTGTTGCACAGGTCCTAT 59.673 43.478 0.00 0.00 0.00 2.57
3946 8575 2.364970 CCTGAATAGAGACCTGGCTCAG 59.635 54.545 16.74 8.32 37.37 3.35
3994 9378 2.560896 CTCTGAAACGCAACGCTTTAC 58.439 47.619 0.00 0.00 0.00 2.01
4112 9505 4.494350 AACAATCATGCGGATTATGCTC 57.506 40.909 3.42 0.00 44.41 4.26
4137 9530 1.858458 GTTGAACGCCCTTGCTTTTTC 59.142 47.619 0.00 0.00 34.43 2.29
4141 9534 2.979814 ACGCCCTTGCTTTTTCTTTT 57.020 40.000 0.00 0.00 34.43 2.27
4142 9535 3.260475 ACGCCCTTGCTTTTTCTTTTT 57.740 38.095 0.00 0.00 34.43 1.94
4166 9559 0.808060 TTGAACACAGACGCAAGCGA 60.808 50.000 22.30 0.00 42.83 4.93
4173 9566 3.243401 ACACAGACGCAAGCGATCATATA 60.243 43.478 22.30 0.00 42.83 0.86
4192 9585 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
4200 9593 3.244215 CGCATACACTCACCCCTATGAAT 60.244 47.826 0.00 0.00 0.00 2.57
4226 9619 3.008049 CACACTACCCTTAGAGCACCTTT 59.992 47.826 0.00 0.00 0.00 3.11
4265 9658 7.855409 CGGCATATCATCTTGAAATTTACGAAA 59.145 33.333 0.00 0.00 0.00 3.46
4304 9697 1.661341 GTTGATGCGAGCTCTTGGAT 58.339 50.000 12.85 3.55 0.00 3.41
4314 9707 2.751806 GAGCTCTTGGATTTGAACCCTG 59.248 50.000 6.43 0.00 0.00 4.45
4329 9722 2.316586 CCTGGTGGGCTGGGGTTAT 61.317 63.158 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.035458 CTCTTTTCGTCTGGGTGCCT 59.965 55.000 0.00 0.00 0.00 4.75
32 33 1.235281 GGGTGCGTGGACCTCTTTTC 61.235 60.000 10.49 0.00 36.14 2.29
45 46 2.005960 CTCTTAGGAGTCCGGGTGCG 62.006 65.000 0.00 0.00 35.03 5.34
68 69 2.593026 TGGGCCTCGTTTGAAGAAAAT 58.407 42.857 4.53 0.00 0.00 1.82
69 70 2.060050 TGGGCCTCGTTTGAAGAAAA 57.940 45.000 4.53 0.00 0.00 2.29
70 71 1.679153 GTTGGGCCTCGTTTGAAGAAA 59.321 47.619 4.53 0.00 0.00 2.52
71 72 1.314730 GTTGGGCCTCGTTTGAAGAA 58.685 50.000 4.53 0.00 0.00 2.52
100 117 9.237846 CTCAAAACTTTTCCATACACTTTTCTC 57.762 33.333 0.00 0.00 0.00 2.87
138 155 9.330063 CTATTAAGAGTGGTTGCTATGATTTCA 57.670 33.333 0.00 0.00 0.00 2.69
168 185 6.688073 TCTTTTTGAGTCCTAGGAACATCT 57.312 37.500 14.65 6.14 0.00 2.90
196 213 3.554324 TCGGTGACTCAAGAAGTTTTTCG 59.446 43.478 0.00 0.00 38.74 3.46
229 246 6.720309 CCCCATTCATACAAAAAGGGAAAAT 58.280 36.000 0.00 0.00 36.96 1.82
247 265 1.905512 GGACGTCAGTAGCCCCATT 59.094 57.895 18.91 0.00 0.00 3.16
254 272 2.071540 TGTGTCTACGGACGTCAGTAG 58.928 52.381 35.63 35.63 44.83 2.57
258 276 3.337358 TCTATTGTGTCTACGGACGTCA 58.663 45.455 18.91 0.00 44.83 4.35
287 305 6.594159 CGTTTGGTAAGTTTATCTGAGGACAT 59.406 38.462 0.00 0.00 0.00 3.06
294 312 8.932791 ACTAATGACGTTTGGTAAGTTTATCTG 58.067 33.333 0.00 0.00 0.00 2.90
313 331 8.038351 TCACAATACGATTTTGAGGACTAATGA 58.962 33.333 0.00 0.00 0.00 2.57
314 332 8.196802 TCACAATACGATTTTGAGGACTAATG 57.803 34.615 0.00 0.00 0.00 1.90
421 439 5.840243 TCAAATGCTATCAAGAACATGGG 57.160 39.130 0.00 0.00 0.00 4.00
548 566 9.263538 CAAATTCATGAACTTCTTTTCCAATCA 57.736 29.630 11.07 0.00 0.00 2.57
742 761 6.871492 GGTACACCTTTTTACAAAATGGATGG 59.129 38.462 20.29 13.40 42.62 3.51
754 773 8.035984 CCTTTTGAACTTTGGTACACCTTTTTA 58.964 33.333 0.00 0.00 39.29 1.52
795 814 8.614346 CAATGATCATTTTCAACTTTGTGGTTT 58.386 29.630 18.41 0.00 0.00 3.27
1180 1200 2.423185 CACATTCCTATTTGGCGCTTCA 59.577 45.455 7.64 0.00 35.26 3.02
1319 1339 2.427506 GTTCCTTGGCTTCGATTGAGT 58.572 47.619 0.00 0.00 0.00 3.41
1466 1490 3.706373 GGTGAGGAGGAGCGGCAA 61.706 66.667 1.45 0.00 0.00 4.52
1713 1785 0.661187 CGCATCTTTGCCACACACAC 60.661 55.000 0.00 0.00 46.57 3.82
1714 1786 0.817229 TCGCATCTTTGCCACACACA 60.817 50.000 0.00 0.00 46.57 3.72
1715 1787 0.523072 ATCGCATCTTTGCCACACAC 59.477 50.000 0.00 0.00 46.57 3.82
1717 1789 2.352503 AAATCGCATCTTTGCCACAC 57.647 45.000 0.00 0.00 46.57 3.82
2034 2277 8.848474 ATGTATATAACGAAGCAAATAAGCCT 57.152 30.769 0.00 0.00 34.23 4.58
2502 2966 1.570857 TTGGTGGGAGCGGGATCAAT 61.571 55.000 0.00 0.00 0.00 2.57
3141 5373 5.941647 CGGTCTTAGTTTGGGGAATTCTTTA 59.058 40.000 5.23 0.00 0.00 1.85
3387 5633 5.645497 GGCCTGATGCTACTAAATTATGGAG 59.355 44.000 0.00 0.00 40.92 3.86
3462 5708 7.779754 TGATTCATTTTCTGAAGGGAATTCA 57.220 32.000 7.93 9.50 46.71 2.57
3637 5913 9.337396 TCTCTAAACAATTGAACACATACACTT 57.663 29.630 13.59 0.00 0.00 3.16
3662 8291 1.641192 AGAGGATCCCAACCCCTTTTC 59.359 52.381 8.55 0.00 33.66 2.29
3670 8299 1.834263 AGTACTGCAGAGGATCCCAAC 59.166 52.381 23.35 0.17 33.66 3.77
3728 8357 0.177836 TAGTGCGGATGACATGTGGG 59.822 55.000 1.15 0.00 0.00 4.61
3739 8368 0.616395 TTCTGGGGATGTAGTGCGGA 60.616 55.000 0.00 0.00 0.00 5.54
3740 8369 0.251916 TTTCTGGGGATGTAGTGCGG 59.748 55.000 0.00 0.00 0.00 5.69
3741 8370 2.009774 CTTTTCTGGGGATGTAGTGCG 58.990 52.381 0.00 0.00 0.00 5.34
3901 8530 4.517075 TCGCCTGATACATGTGTTTTGAAA 59.483 37.500 9.11 0.00 0.00 2.69
3946 8575 1.661112 GAAATACAGAGGCAGCGACAC 59.339 52.381 0.00 0.00 0.00 3.67
3994 9378 3.186119 ACGGCACACACAAAAATCAAAG 58.814 40.909 0.00 0.00 0.00 2.77
4112 9505 0.373716 GCAAGGGCGTTCAACTATCG 59.626 55.000 0.00 0.00 0.00 2.92
4144 9537 2.525055 GCTTGCGTCTGTGTTCAAAAA 58.475 42.857 0.00 0.00 0.00 1.94
4145 9538 1.530852 CGCTTGCGTCTGTGTTCAAAA 60.531 47.619 6.86 0.00 0.00 2.44
4146 9539 0.027455 CGCTTGCGTCTGTGTTCAAA 59.973 50.000 6.86 0.00 0.00 2.69
4147 9540 0.808060 TCGCTTGCGTCTGTGTTCAA 60.808 50.000 14.70 0.00 0.00 2.69
4148 9541 0.599991 ATCGCTTGCGTCTGTGTTCA 60.600 50.000 14.70 0.00 0.00 3.18
4149 9542 0.093705 GATCGCTTGCGTCTGTGTTC 59.906 55.000 14.70 0.00 0.00 3.18
4154 9547 3.120286 GTGTATATGATCGCTTGCGTCTG 59.880 47.826 14.70 0.00 0.00 3.51
4166 9559 4.166523 GAGTGTATGCGCGTGTATATGAT 58.833 43.478 13.61 0.00 0.00 2.45
4173 9566 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
4192 9585 3.118261 AGGGTAGTGTGTGCATTCATAGG 60.118 47.826 0.00 0.00 0.00 2.57
4200 9593 1.275291 GCTCTAAGGGTAGTGTGTGCA 59.725 52.381 0.00 0.00 0.00 4.57
4226 9619 3.133901 TGATATGCCGGCTCAGTCTTTTA 59.866 43.478 29.70 2.45 0.00 1.52
4265 9658 2.184322 CGTGGTGCCTACGCTGAT 59.816 61.111 0.00 0.00 34.56 2.90
4314 9707 1.076995 GTGATAACCCCAGCCCACC 60.077 63.158 0.00 0.00 0.00 4.61
4329 9722 2.225522 TGGATGGTTAGAGGGTCAGTGA 60.226 50.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.