Multiple sequence alignment - TraesCS7A01G482800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G482800 chr7A 100.000 2399 0 0 1 2399 674753490 674751092 0.000000e+00 4431
1 TraesCS7A01G482800 chr7A 99.616 2083 6 2 319 2399 674738438 674736356 0.000000e+00 3801
2 TraesCS7A01G482800 chr7A 91.555 1338 91 10 313 1634 674506851 674505520 0.000000e+00 1825
3 TraesCS7A01G482800 chr7A 91.779 815 67 0 822 1636 674521286 674520472 0.000000e+00 1134
4 TraesCS7A01G482800 chr7A 90.802 511 29 10 321 819 674523091 674522587 0.000000e+00 667
5 TraesCS7A01G482800 chr7A 90.291 515 31 11 321 823 674527360 674526853 0.000000e+00 656
6 TraesCS7A01G482800 chr7A 98.113 318 6 0 1 318 678943261 678942944 2.690000e-154 555
7 TraesCS7A01G482800 chr7A 92.958 355 23 2 2047 2399 674796192 674795838 1.270000e-142 516
8 TraesCS7A01G482800 chr7A 90.028 351 26 6 2051 2399 674607836 674607493 1.690000e-121 446
9 TraesCS7A01G482800 chr7A 86.034 358 24 10 2047 2399 674520484 674520148 6.300000e-96 361
10 TraesCS7A01G482800 chr7D 93.697 1174 51 10 479 1636 582748408 582747242 0.000000e+00 1736
11 TraesCS7A01G482800 chr7D 90.512 1328 105 13 319 1636 582651465 582650149 0.000000e+00 1735
12 TraesCS7A01G482800 chr7D 89.458 1328 102 19 319 1636 582545992 582544693 0.000000e+00 1642
13 TraesCS7A01G482800 chr7D 87.377 1220 109 19 432 1636 582662729 582661540 0.000000e+00 1358
14 TraesCS7A01G482800 chr7D 95.763 354 14 1 2047 2399 582747254 582746901 9.620000e-159 569
15 TraesCS7A01G482800 chr7D 89.944 358 30 4 2047 2399 583037774 583037418 7.820000e-125 457
16 TraesCS7A01G482800 chr7D 89.888 356 30 4 2047 2399 582661552 582661200 1.010000e-123 453
17 TraesCS7A01G482800 chr7D 89.326 356 32 4 2047 2399 582556377 582556025 2.190000e-120 442
18 TraesCS7A01G482800 chr7D 91.803 244 17 2 321 564 582745311 582745071 1.060000e-88 337
19 TraesCS7A01G482800 chr7D 90.574 244 18 3 321 564 583035900 583035662 3.850000e-83 318
20 TraesCS7A01G482800 chr7D 90.265 113 11 0 321 433 582756137 582756025 5.340000e-32 148
21 TraesCS7A01G482800 chr7D 83.333 144 13 11 2128 2265 268318701 268318839 3.240000e-24 122
22 TraesCS7A01G482800 chr7B 89.461 1224 100 15 437 1636 650362466 650361248 0.000000e+00 1519
23 TraesCS7A01G482800 chr7B 89.609 1203 99 20 448 1636 650456178 650454988 0.000000e+00 1506
24 TraesCS7A01G482800 chr7B 89.216 1224 102 16 437 1636 650409449 650408232 0.000000e+00 1502
25 TraesCS7A01G482800 chr7B 88.889 1224 107 15 437 1636 650318194 650316976 0.000000e+00 1480
26 TraesCS7A01G482800 chr3A 96.897 419 12 1 1632 2050 638745038 638744621 0.000000e+00 701
27 TraesCS7A01G482800 chr3A 94.988 419 19 2 1633 2051 687416243 687416659 0.000000e+00 656
28 TraesCS7A01G482800 chr3A 94.712 416 20 2 1631 2046 26214091 26213678 0.000000e+00 645
29 TraesCS7A01G482800 chr3A 94.231 416 23 1 1631 2046 670822773 670822359 3.360000e-178 634
30 TraesCS7A01G482800 chr3A 97.523 323 8 0 1 323 337390031 337389709 9.690000e-154 553
31 TraesCS7A01G482800 chr1A 95.652 414 18 0 1633 2046 4043129 4043542 0.000000e+00 665
32 TraesCS7A01G482800 chr1A 95.411 414 18 1 1633 2046 4035143 4035555 0.000000e+00 658
33 TraesCS7A01G482800 chr1A 97.826 322 6 1 1 322 12179546 12179866 2.690000e-154 555
34 TraesCS7A01G482800 chr1A 96.667 330 9 2 1 328 19700778 19701107 4.510000e-152 547
35 TraesCS7A01G482800 chr2A 95.411 414 18 1 1633 2046 62699563 62699151 0.000000e+00 658
36 TraesCS7A01G482800 chr2A 97.819 321 7 0 1 321 773484049 773484369 2.690000e-154 555
37 TraesCS7A01G482800 chr2B 94.928 414 20 1 1633 2046 579996365 579995953 0.000000e+00 647
38 TraesCS7A01G482800 chr2B 85.714 133 13 6 2136 2265 419872009 419872138 4.160000e-28 135
39 TraesCS7A01G482800 chr5A 98.119 319 6 0 1 319 85026061 85026379 7.490000e-155 556
40 TraesCS7A01G482800 chr5A 98.113 318 6 0 1 318 74689284 74689601 2.690000e-154 555
41 TraesCS7A01G482800 chr6A 98.113 318 6 0 1 318 52170699 52170382 2.690000e-154 555
42 TraesCS7A01G482800 chr3B 98.113 318 6 0 1 318 771506094 771505777 2.690000e-154 555


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G482800 chr7A 674751092 674753490 2398 True 4431.000000 4431 100.000000 1 2399 1 chr7A.!!$R4 2398
1 TraesCS7A01G482800 chr7A 674736356 674738438 2082 True 3801.000000 3801 99.616000 319 2399 1 chr7A.!!$R3 2080
2 TraesCS7A01G482800 chr7A 674505520 674506851 1331 True 1825.000000 1825 91.555000 313 1634 1 chr7A.!!$R1 1321
3 TraesCS7A01G482800 chr7A 674520148 674527360 7212 True 704.500000 1134 89.726500 321 2399 4 chr7A.!!$R7 2078
4 TraesCS7A01G482800 chr7D 582650149 582651465 1316 True 1735.000000 1735 90.512000 319 1636 1 chr7D.!!$R3 1317
5 TraesCS7A01G482800 chr7D 582544693 582545992 1299 True 1642.000000 1642 89.458000 319 1636 1 chr7D.!!$R1 1317
6 TraesCS7A01G482800 chr7D 582661200 582662729 1529 True 905.500000 1358 88.632500 432 2399 2 chr7D.!!$R5 1967
7 TraesCS7A01G482800 chr7D 582745071 582748408 3337 True 880.666667 1736 93.754333 321 2399 3 chr7D.!!$R6 2078
8 TraesCS7A01G482800 chr7D 583035662 583037774 2112 True 387.500000 457 90.259000 321 2399 2 chr7D.!!$R7 2078
9 TraesCS7A01G482800 chr7B 650361248 650362466 1218 True 1519.000000 1519 89.461000 437 1636 1 chr7B.!!$R2 1199
10 TraesCS7A01G482800 chr7B 650454988 650456178 1190 True 1506.000000 1506 89.609000 448 1636 1 chr7B.!!$R4 1188
11 TraesCS7A01G482800 chr7B 650408232 650409449 1217 True 1502.000000 1502 89.216000 437 1636 1 chr7B.!!$R3 1199
12 TraesCS7A01G482800 chr7B 650316976 650318194 1218 True 1480.000000 1480 88.889000 437 1636 1 chr7B.!!$R1 1199

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
158 159 0.035056 AGGCTTGTAGGCGCAATCTT 60.035 50.0 10.83 0.0 46.58 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1781 8956 1.899814 TGTAGGGCACTTCTCGAATGT 59.1 47.619 0.0 0.0 0.0 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.086161 GCCCGAACGAAACACATTG 57.914 52.632 0.00 0.00 0.00 2.82
21 22 2.916111 CCCGAACGAAACACATTGAAG 58.084 47.619 0.00 0.00 0.00 3.02
25 26 4.495019 CCGAACGAAACACATTGAAGTTGA 60.495 41.667 0.00 0.00 0.00 3.18
28 29 6.508880 CGAACGAAACACATTGAAGTTGACTA 60.509 38.462 0.00 0.00 0.00 2.59
29 30 6.861065 ACGAAACACATTGAAGTTGACTAT 57.139 33.333 0.00 0.00 0.00 2.12
30 31 6.888430 ACGAAACACATTGAAGTTGACTATC 58.112 36.000 0.00 0.00 0.00 2.08
31 32 6.481976 ACGAAACACATTGAAGTTGACTATCA 59.518 34.615 0.00 0.00 0.00 2.15
32 33 6.792250 CGAAACACATTGAAGTTGACTATCAC 59.208 38.462 0.00 0.00 0.00 3.06
33 34 7.307396 CGAAACACATTGAAGTTGACTATCACT 60.307 37.037 0.00 0.00 0.00 3.41
35 36 7.807977 ACACATTGAAGTTGACTATCACTTT 57.192 32.000 0.00 0.00 0.00 2.66
36 37 7.642669 ACACATTGAAGTTGACTATCACTTTG 58.357 34.615 0.00 0.00 0.00 2.77
37 38 7.283127 ACACATTGAAGTTGACTATCACTTTGT 59.717 33.333 0.00 0.00 0.00 2.83
38 39 8.773645 CACATTGAAGTTGACTATCACTTTGTA 58.226 33.333 0.00 0.00 0.00 2.41
39 40 8.774586 ACATTGAAGTTGACTATCACTTTGTAC 58.225 33.333 0.00 0.00 0.00 2.90
40 41 7.402811 TTGAAGTTGACTATCACTTTGTACG 57.597 36.000 0.00 0.00 0.00 3.67
41 42 5.924254 TGAAGTTGACTATCACTTTGTACGG 59.076 40.000 0.00 0.00 0.00 4.02
43 44 4.525487 AGTTGACTATCACTTTGTACGGGA 59.475 41.667 0.00 0.00 0.00 5.14
44 45 5.011329 AGTTGACTATCACTTTGTACGGGAA 59.989 40.000 0.00 0.00 0.00 3.97
45 46 4.813027 TGACTATCACTTTGTACGGGAAC 58.187 43.478 0.00 0.00 0.00 3.62
61 62 4.054780 GGGAACGTATATCACAGAAGCA 57.945 45.455 0.00 0.00 0.00 3.91
63 64 4.270325 GGGAACGTATATCACAGAAGCAAC 59.730 45.833 0.00 0.00 0.00 4.17
65 66 5.232414 GGAACGTATATCACAGAAGCAACTC 59.768 44.000 0.00 0.00 0.00 3.01
66 67 4.683832 ACGTATATCACAGAAGCAACTCC 58.316 43.478 0.00 0.00 0.00 3.85
67 68 4.159693 ACGTATATCACAGAAGCAACTCCA 59.840 41.667 0.00 0.00 0.00 3.86
68 69 4.742167 CGTATATCACAGAAGCAACTCCAG 59.258 45.833 0.00 0.00 0.00 3.86
69 70 5.450550 CGTATATCACAGAAGCAACTCCAGA 60.451 44.000 0.00 0.00 0.00 3.86
71 72 3.325293 TCACAGAAGCAACTCCAGATC 57.675 47.619 0.00 0.00 0.00 2.75
72 73 2.634453 TCACAGAAGCAACTCCAGATCA 59.366 45.455 0.00 0.00 0.00 2.92
74 75 3.436015 CACAGAAGCAACTCCAGATCAAG 59.564 47.826 0.00 0.00 0.00 3.02
76 77 4.070716 CAGAAGCAACTCCAGATCAAGTT 58.929 43.478 0.00 0.00 36.16 2.66
77 78 4.518211 CAGAAGCAACTCCAGATCAAGTTT 59.482 41.667 0.00 0.00 33.53 2.66
79 80 6.373774 CAGAAGCAACTCCAGATCAAGTTTAT 59.626 38.462 0.00 0.00 33.53 1.40
80 81 6.597280 AGAAGCAACTCCAGATCAAGTTTATC 59.403 38.462 0.00 1.03 33.53 1.75
81 82 6.059787 AGCAACTCCAGATCAAGTTTATCT 57.940 37.500 0.00 0.00 33.53 1.98
82 83 6.112058 AGCAACTCCAGATCAAGTTTATCTC 58.888 40.000 0.00 0.00 33.53 2.75
83 84 5.877012 GCAACTCCAGATCAAGTTTATCTCA 59.123 40.000 0.00 0.00 33.53 3.27
85 86 7.254727 GCAACTCCAGATCAAGTTTATCTCATC 60.255 40.741 0.00 0.00 33.53 2.92
87 88 8.774546 ACTCCAGATCAAGTTTATCTCATCTA 57.225 34.615 0.00 0.00 31.22 1.98
89 90 9.695526 CTCCAGATCAAGTTTATCTCATCTAAG 57.304 37.037 0.00 0.00 31.22 2.18
91 92 8.646004 CCAGATCAAGTTTATCTCATCTAAGGA 58.354 37.037 0.00 0.00 31.22 3.36
96 97 9.823647 TCAAGTTTATCTCATCTAAGGATCAAC 57.176 33.333 0.00 0.00 0.00 3.18
97 98 9.829507 CAAGTTTATCTCATCTAAGGATCAACT 57.170 33.333 0.00 0.00 36.26 3.16
100 101 8.555361 GTTTATCTCATCTAAGGATCAACTTGC 58.445 37.037 0.00 0.00 32.02 4.01
102 103 5.668471 TCTCATCTAAGGATCAACTTGCAG 58.332 41.667 0.00 0.00 32.02 4.41
103 104 5.423290 TCTCATCTAAGGATCAACTTGCAGA 59.577 40.000 0.00 0.00 32.02 4.26
104 105 5.423015 TCATCTAAGGATCAACTTGCAGAC 58.577 41.667 0.00 0.00 32.02 3.51
106 107 5.426689 TCTAAGGATCAACTTGCAGACAT 57.573 39.130 0.00 0.00 32.02 3.06
107 108 5.423015 TCTAAGGATCAACTTGCAGACATC 58.577 41.667 0.00 0.00 32.02 3.06
110 111 4.260170 AGGATCAACTTGCAGACATCTTC 58.740 43.478 0.00 0.00 0.00 2.87
111 112 4.005650 GGATCAACTTGCAGACATCTTCA 58.994 43.478 0.00 0.00 0.00 3.02
112 113 4.142730 GGATCAACTTGCAGACATCTTCAC 60.143 45.833 0.00 0.00 0.00 3.18
113 114 4.077300 TCAACTTGCAGACATCTTCACT 57.923 40.909 0.00 0.00 0.00 3.41
114 115 5.213891 TCAACTTGCAGACATCTTCACTA 57.786 39.130 0.00 0.00 0.00 2.74
116 117 5.698089 TCAACTTGCAGACATCTTCACTAAG 59.302 40.000 0.00 0.00 0.00 2.18
118 119 2.977914 TGCAGACATCTTCACTAAGCC 58.022 47.619 0.00 0.00 32.36 4.35
119 120 2.568956 TGCAGACATCTTCACTAAGCCT 59.431 45.455 0.00 0.00 32.36 4.58
120 121 3.008375 TGCAGACATCTTCACTAAGCCTT 59.992 43.478 0.00 0.00 32.36 4.35
121 122 4.006319 GCAGACATCTTCACTAAGCCTTT 58.994 43.478 0.00 0.00 32.36 3.11
122 123 5.178797 GCAGACATCTTCACTAAGCCTTTA 58.821 41.667 0.00 0.00 32.36 1.85
123 124 5.064071 GCAGACATCTTCACTAAGCCTTTAC 59.936 44.000 0.00 0.00 32.36 2.01
124 125 5.582665 CAGACATCTTCACTAAGCCTTTACC 59.417 44.000 0.00 0.00 32.36 2.85
125 126 5.248477 AGACATCTTCACTAAGCCTTTACCA 59.752 40.000 0.00 0.00 32.36 3.25
126 127 5.246307 ACATCTTCACTAAGCCTTTACCAC 58.754 41.667 0.00 0.00 32.36 4.16
128 129 4.894784 TCTTCACTAAGCCTTTACCACTG 58.105 43.478 0.00 0.00 32.36 3.66
129 130 3.053831 TCACTAAGCCTTTACCACTGC 57.946 47.619 0.00 0.00 0.00 4.40
130 131 2.084546 CACTAAGCCTTTACCACTGCC 58.915 52.381 0.00 0.00 0.00 4.85
132 133 0.675522 TAAGCCTTTACCACTGCCGC 60.676 55.000 0.00 0.00 0.00 6.53
133 134 2.671619 GCCTTTACCACTGCCGCA 60.672 61.111 0.00 0.00 0.00 5.69
134 135 2.690778 GCCTTTACCACTGCCGCAG 61.691 63.158 19.08 19.08 37.52 5.18
136 137 0.889186 CCTTTACCACTGCCGCAGTT 60.889 55.000 23.59 12.83 42.59 3.16
141 142 2.620112 CCACTGCCGCAGTTTGAGG 61.620 63.158 23.59 17.09 42.59 3.86
148 149 0.798776 CCGCAGTTTGAGGCTTGTAG 59.201 55.000 0.00 0.00 28.70 2.74
150 151 0.523519 GCAGTTTGAGGCTTGTAGGC 59.476 55.000 0.00 0.00 41.73 3.93
151 152 0.798776 CAGTTTGAGGCTTGTAGGCG 59.201 55.000 0.00 0.00 46.58 5.52
152 153 0.955919 AGTTTGAGGCTTGTAGGCGC 60.956 55.000 0.00 0.00 46.58 6.53
154 155 2.747022 TGAGGCTTGTAGGCGCAA 59.253 55.556 10.83 0.00 46.44 4.85
155 156 1.299648 TGAGGCTTGTAGGCGCAAT 59.700 52.632 10.83 0.00 46.44 3.56
157 158 0.462759 GAGGCTTGTAGGCGCAATCT 60.463 55.000 10.83 0.00 46.58 2.40
158 159 0.035056 AGGCTTGTAGGCGCAATCTT 60.035 50.000 10.83 0.00 46.58 2.40
160 161 1.330829 GGCTTGTAGGCGCAATCTTAC 59.669 52.381 10.83 4.10 0.00 2.34
161 162 1.330829 GCTTGTAGGCGCAATCTTACC 59.669 52.381 10.83 0.00 0.00 2.85
163 164 1.200519 TGTAGGCGCAATCTTACCCT 58.799 50.000 10.83 0.00 0.00 4.34
165 166 2.210961 GTAGGCGCAATCTTACCCTTC 58.789 52.381 10.83 0.00 0.00 3.46
166 167 0.912486 AGGCGCAATCTTACCCTTCT 59.088 50.000 10.83 0.00 0.00 2.85
167 168 1.134371 AGGCGCAATCTTACCCTTCTC 60.134 52.381 10.83 0.00 0.00 2.87
168 169 1.406887 GGCGCAATCTTACCCTTCTCA 60.407 52.381 10.83 0.00 0.00 3.27
169 170 1.936547 GCGCAATCTTACCCTTCTCAG 59.063 52.381 0.30 0.00 0.00 3.35
171 172 3.600388 CGCAATCTTACCCTTCTCAGTT 58.400 45.455 0.00 0.00 0.00 3.16
172 173 3.619038 CGCAATCTTACCCTTCTCAGTTC 59.381 47.826 0.00 0.00 0.00 3.01
173 174 4.621747 CGCAATCTTACCCTTCTCAGTTCT 60.622 45.833 0.00 0.00 0.00 3.01
174 175 5.249420 GCAATCTTACCCTTCTCAGTTCTT 58.751 41.667 0.00 0.00 0.00 2.52
175 176 5.707764 GCAATCTTACCCTTCTCAGTTCTTT 59.292 40.000 0.00 0.00 0.00 2.52
176 177 6.879458 GCAATCTTACCCTTCTCAGTTCTTTA 59.121 38.462 0.00 0.00 0.00 1.85
178 179 8.314751 CAATCTTACCCTTCTCAGTTCTTTAGA 58.685 37.037 0.00 0.00 0.00 2.10
179 180 7.850935 TCTTACCCTTCTCAGTTCTTTAGAA 57.149 36.000 0.00 0.00 0.00 2.10
182 183 9.508642 CTTACCCTTCTCAGTTCTTTAGAAAAT 57.491 33.333 0.00 0.00 35.58 1.82
184 185 6.717084 ACCCTTCTCAGTTCTTTAGAAAATGG 59.283 38.462 0.00 0.00 35.58 3.16
185 186 6.349694 CCCTTCTCAGTTCTTTAGAAAATGGC 60.350 42.308 0.00 0.00 35.58 4.40
187 188 7.607991 CCTTCTCAGTTCTTTAGAAAATGGCTA 59.392 37.037 0.00 0.00 35.58 3.93
188 189 8.918202 TTCTCAGTTCTTTAGAAAATGGCTAA 57.082 30.769 0.00 0.00 35.58 3.09
189 190 8.553459 TCTCAGTTCTTTAGAAAATGGCTAAG 57.447 34.615 0.00 0.00 35.58 2.18
191 192 9.171877 CTCAGTTCTTTAGAAAATGGCTAAGAT 57.828 33.333 0.00 0.00 35.58 2.40
192 193 9.520515 TCAGTTCTTTAGAAAATGGCTAAGATT 57.479 29.630 0.00 0.00 35.58 2.40
193 194 9.565213 CAGTTCTTTAGAAAATGGCTAAGATTG 57.435 33.333 0.00 0.00 35.58 2.67
195 196 9.780413 GTTCTTTAGAAAATGGCTAAGATTGAG 57.220 33.333 0.00 0.00 35.58 3.02
196 197 8.511604 TCTTTAGAAAATGGCTAAGATTGAGG 57.488 34.615 0.00 0.00 0.00 3.86
197 198 7.557719 TCTTTAGAAAATGGCTAAGATTGAGGG 59.442 37.037 0.00 0.00 0.00 4.30
198 199 5.456921 AGAAAATGGCTAAGATTGAGGGA 57.543 39.130 0.00 0.00 0.00 4.20
199 200 5.444176 AGAAAATGGCTAAGATTGAGGGAG 58.556 41.667 0.00 0.00 0.00 4.30
200 201 3.872459 AATGGCTAAGATTGAGGGAGG 57.128 47.619 0.00 0.00 0.00 4.30
201 202 1.511613 TGGCTAAGATTGAGGGAGGG 58.488 55.000 0.00 0.00 0.00 4.30
202 203 1.274416 TGGCTAAGATTGAGGGAGGGT 60.274 52.381 0.00 0.00 0.00 4.34
203 204 1.141858 GGCTAAGATTGAGGGAGGGTG 59.858 57.143 0.00 0.00 0.00 4.61
204 205 1.840635 GCTAAGATTGAGGGAGGGTGT 59.159 52.381 0.00 0.00 0.00 4.16
205 206 2.239907 GCTAAGATTGAGGGAGGGTGTT 59.760 50.000 0.00 0.00 0.00 3.32
208 209 3.491766 AGATTGAGGGAGGGTGTTAGA 57.508 47.619 0.00 0.00 0.00 2.10
211 212 3.839323 TTGAGGGAGGGTGTTAGACTA 57.161 47.619 0.00 0.00 0.00 2.59
212 213 4.348020 TTGAGGGAGGGTGTTAGACTAT 57.652 45.455 0.00 0.00 0.00 2.12
213 214 3.643237 TGAGGGAGGGTGTTAGACTATG 58.357 50.000 0.00 0.00 0.00 2.23
214 215 3.012502 TGAGGGAGGGTGTTAGACTATGT 59.987 47.826 0.00 0.00 0.00 2.29
215 216 4.231195 TGAGGGAGGGTGTTAGACTATGTA 59.769 45.833 0.00 0.00 0.00 2.29
216 217 5.103215 TGAGGGAGGGTGTTAGACTATGTAT 60.103 44.000 0.00 0.00 0.00 2.29
217 218 6.103649 TGAGGGAGGGTGTTAGACTATGTATA 59.896 42.308 0.00 0.00 0.00 1.47
218 219 6.930475 AGGGAGGGTGTTAGACTATGTATAA 58.070 40.000 0.00 0.00 0.00 0.98
219 220 6.781507 AGGGAGGGTGTTAGACTATGTATAAC 59.218 42.308 7.91 7.91 39.66 1.89
220 221 6.781507 GGGAGGGTGTTAGACTATGTATAACT 59.218 42.308 13.79 0.00 39.84 2.24
221 222 7.289549 GGGAGGGTGTTAGACTATGTATAACTT 59.710 40.741 13.79 1.58 39.84 2.66
222 223 8.358895 GGAGGGTGTTAGACTATGTATAACTTC 58.641 40.741 13.79 8.55 39.84 3.01
224 225 8.915036 AGGGTGTTAGACTATGTATAACTTCTG 58.085 37.037 13.79 0.00 39.84 3.02
250 251 7.816945 ACCTATGTACGTATTGTAACACAAC 57.183 36.000 0.00 0.00 41.40 3.32
251 252 6.813152 ACCTATGTACGTATTGTAACACAACC 59.187 38.462 0.00 0.00 41.40 3.77
252 253 6.812656 CCTATGTACGTATTGTAACACAACCA 59.187 38.462 0.00 0.00 41.40 3.67
255 256 8.774890 ATGTACGTATTGTAACACAACCATTA 57.225 30.769 0.00 0.00 41.40 1.90
256 257 8.774890 TGTACGTATTGTAACACAACCATTAT 57.225 30.769 0.00 0.00 41.40 1.28
279 280 9.744125 TTATATATAATGAGATAAGCCACCCCT 57.256 33.333 0.81 0.00 0.00 4.79
281 282 9.744125 ATATATAATGAGATAAGCCACCCCTAA 57.256 33.333 0.00 0.00 0.00 2.69
282 283 6.780198 ATAATGAGATAAGCCACCCCTAAA 57.220 37.500 0.00 0.00 0.00 1.85
283 284 4.713792 ATGAGATAAGCCACCCCTAAAG 57.286 45.455 0.00 0.00 0.00 1.85
298 299 3.344515 CCTAAAGGGTTGTGCTAGTTCC 58.655 50.000 0.00 0.00 0.00 3.62
299 300 2.287977 AAAGGGTTGTGCTAGTTCCC 57.712 50.000 0.00 0.00 38.50 3.97
300 301 1.145571 AAGGGTTGTGCTAGTTCCCA 58.854 50.000 0.00 0.00 40.48 4.37
303 304 2.091555 AGGGTTGTGCTAGTTCCCAAAA 60.092 45.455 0.00 0.00 40.48 2.44
305 306 2.956333 GGTTGTGCTAGTTCCCAAAACT 59.044 45.455 0.00 0.00 31.42 2.66
307 308 4.581409 GGTTGTGCTAGTTCCCAAAACTTA 59.419 41.667 0.00 0.00 31.42 2.24
308 309 5.243060 GGTTGTGCTAGTTCCCAAAACTTAT 59.757 40.000 0.00 0.00 31.42 1.73
310 311 6.325919 TGTGCTAGTTCCCAAAACTTATTG 57.674 37.500 0.00 0.00 0.00 1.90
313 314 6.206829 GTGCTAGTTCCCAAAACTTATTGTCT 59.793 38.462 0.00 0.00 0.00 3.41
316 317 8.235226 GCTAGTTCCCAAAACTTATTGTCTTAC 58.765 37.037 0.00 0.00 0.00 2.34
317 318 9.280174 CTAGTTCCCAAAACTTATTGTCTTACA 57.720 33.333 0.00 0.00 0.00 2.41
1781 8956 5.344743 TGCAAAGTTTGGTGGTCAAATAA 57.655 34.783 17.11 0.00 45.79 1.40
1796 8971 5.324697 GTCAAATAACATTCGAGAAGTGCC 58.675 41.667 0.00 0.00 0.00 5.01
1951 9126 9.037737 CCATAACATTTGTTGATGATCATTTCC 57.962 33.333 10.14 0.00 38.90 3.13
1961 9136 6.182039 TGATGATCATTTCCACGAAGTTTC 57.818 37.500 10.14 0.00 41.61 2.78
2004 9179 0.031994 ATGTTTTCTTGCGTGGGTGC 59.968 50.000 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.589223 TCAATGTGTTTCGTTCGGGC 59.411 50.000 0.00 0.00 0.00 6.13
1 2 2.289547 ACTTCAATGTGTTTCGTTCGGG 59.710 45.455 0.00 0.00 0.00 5.14
2 3 3.602390 ACTTCAATGTGTTTCGTTCGG 57.398 42.857 0.00 0.00 0.00 4.30
5 6 5.560966 AGTCAACTTCAATGTGTTTCGTT 57.439 34.783 0.00 0.00 0.00 3.85
7 8 6.792250 GTGATAGTCAACTTCAATGTGTTTCG 59.208 38.462 0.00 0.00 0.00 3.46
8 9 7.865707 AGTGATAGTCAACTTCAATGTGTTTC 58.134 34.615 0.00 0.00 0.00 2.78
10 11 7.807977 AAGTGATAGTCAACTTCAATGTGTT 57.192 32.000 0.00 0.00 0.00 3.32
11 12 7.283127 ACAAAGTGATAGTCAACTTCAATGTGT 59.717 33.333 10.23 10.23 32.66 3.72
12 13 7.642669 ACAAAGTGATAGTCAACTTCAATGTG 58.357 34.615 9.41 9.41 30.94 3.21
13 14 7.807977 ACAAAGTGATAGTCAACTTCAATGT 57.192 32.000 0.00 0.00 0.00 2.71
14 15 7.952101 CGTACAAAGTGATAGTCAACTTCAATG 59.048 37.037 0.00 0.00 0.00 2.82
15 16 7.117812 CCGTACAAAGTGATAGTCAACTTCAAT 59.882 37.037 0.00 0.00 0.00 2.57
16 17 6.422701 CCGTACAAAGTGATAGTCAACTTCAA 59.577 38.462 0.00 0.00 0.00 2.69
17 18 5.924254 CCGTACAAAGTGATAGTCAACTTCA 59.076 40.000 0.00 0.00 0.00 3.02
18 19 5.347907 CCCGTACAAAGTGATAGTCAACTTC 59.652 44.000 0.00 0.00 0.00 3.01
21 22 4.813027 TCCCGTACAAAGTGATAGTCAAC 58.187 43.478 0.00 0.00 0.00 3.18
25 26 3.841643 CGTTCCCGTACAAAGTGATAGT 58.158 45.455 0.00 0.00 0.00 2.12
39 40 3.050619 GCTTCTGTGATATACGTTCCCG 58.949 50.000 0.00 0.00 40.83 5.14
40 41 4.054780 TGCTTCTGTGATATACGTTCCC 57.945 45.455 0.00 0.00 0.00 3.97
41 42 5.109903 AGTTGCTTCTGTGATATACGTTCC 58.890 41.667 0.00 0.00 0.00 3.62
43 44 5.109903 GGAGTTGCTTCTGTGATATACGTT 58.890 41.667 0.00 0.00 0.00 3.99
44 45 4.159693 TGGAGTTGCTTCTGTGATATACGT 59.840 41.667 0.00 0.00 0.00 3.57
45 46 4.682787 TGGAGTTGCTTCTGTGATATACG 58.317 43.478 0.00 0.00 0.00 3.06
46 47 5.907207 TCTGGAGTTGCTTCTGTGATATAC 58.093 41.667 0.00 0.00 0.00 1.47
48 49 5.129980 TGATCTGGAGTTGCTTCTGTGATAT 59.870 40.000 0.00 0.00 0.00 1.63
50 51 3.262660 TGATCTGGAGTTGCTTCTGTGAT 59.737 43.478 0.00 0.00 0.00 3.06
52 53 3.049708 TGATCTGGAGTTGCTTCTGTG 57.950 47.619 0.00 0.00 0.00 3.66
53 54 3.072184 ACTTGATCTGGAGTTGCTTCTGT 59.928 43.478 0.00 0.00 0.00 3.41
54 55 3.672808 ACTTGATCTGGAGTTGCTTCTG 58.327 45.455 0.00 0.00 0.00 3.02
55 56 4.363991 AACTTGATCTGGAGTTGCTTCT 57.636 40.909 8.31 0.00 34.96 2.85
56 57 6.597280 AGATAAACTTGATCTGGAGTTGCTTC 59.403 38.462 9.43 7.66 36.31 3.86
57 58 6.479884 AGATAAACTTGATCTGGAGTTGCTT 58.520 36.000 9.43 0.39 36.31 3.91
59 60 5.877012 TGAGATAAACTTGATCTGGAGTTGC 59.123 40.000 9.43 4.71 36.31 4.17
60 61 7.986320 AGATGAGATAAACTTGATCTGGAGTTG 59.014 37.037 9.43 0.00 36.31 3.16
61 62 8.088463 AGATGAGATAAACTTGATCTGGAGTT 57.912 34.615 0.00 0.00 37.69 3.01
63 64 9.695526 CTTAGATGAGATAAACTTGATCTGGAG 57.304 37.037 0.00 0.00 33.71 3.86
65 66 8.646004 TCCTTAGATGAGATAAACTTGATCTGG 58.354 37.037 0.00 0.00 33.71 3.86
71 72 9.829507 AGTTGATCCTTAGATGAGATAAACTTG 57.170 33.333 0.00 0.00 38.14 3.16
74 75 8.555361 GCAAGTTGATCCTTAGATGAGATAAAC 58.445 37.037 7.16 0.00 33.27 2.01
76 77 7.795047 TGCAAGTTGATCCTTAGATGAGATAA 58.205 34.615 7.16 0.00 30.90 1.75
77 78 7.288621 TCTGCAAGTTGATCCTTAGATGAGATA 59.711 37.037 7.16 0.00 30.25 1.98
79 80 5.423290 TCTGCAAGTTGATCCTTAGATGAGA 59.577 40.000 7.16 0.00 30.25 3.27
80 81 5.523188 GTCTGCAAGTTGATCCTTAGATGAG 59.477 44.000 7.16 0.00 30.25 2.90
81 82 5.046376 TGTCTGCAAGTTGATCCTTAGATGA 60.046 40.000 7.16 0.00 30.25 2.92
82 83 5.181009 TGTCTGCAAGTTGATCCTTAGATG 58.819 41.667 7.16 0.00 30.25 2.90
83 84 5.426689 TGTCTGCAAGTTGATCCTTAGAT 57.573 39.130 7.16 0.00 32.21 1.98
85 86 5.426504 AGATGTCTGCAAGTTGATCCTTAG 58.573 41.667 7.16 0.00 33.76 2.18
87 88 4.298103 AGATGTCTGCAAGTTGATCCTT 57.702 40.909 7.16 0.00 33.76 3.36
89 90 4.005650 TGAAGATGTCTGCAAGTTGATCC 58.994 43.478 7.16 0.00 33.76 3.36
91 92 4.649692 AGTGAAGATGTCTGCAAGTTGAT 58.350 39.130 7.16 0.00 32.26 2.57
93 94 5.616424 GCTTAGTGAAGATGTCTGCAAGTTG 60.616 44.000 0.00 0.00 32.26 3.16
94 95 4.453819 GCTTAGTGAAGATGTCTGCAAGTT 59.546 41.667 0.00 0.00 32.26 2.66
95 96 3.999663 GCTTAGTGAAGATGTCTGCAAGT 59.000 43.478 0.00 0.00 32.26 3.16
96 97 3.373439 GGCTTAGTGAAGATGTCTGCAAG 59.627 47.826 0.00 0.00 32.26 4.01
97 98 3.008375 AGGCTTAGTGAAGATGTCTGCAA 59.992 43.478 0.00 0.00 32.26 4.08
100 101 5.582665 GGTAAAGGCTTAGTGAAGATGTCTG 59.417 44.000 0.00 0.00 34.25 3.51
102 103 5.351740 GTGGTAAAGGCTTAGTGAAGATGTC 59.648 44.000 0.00 0.00 34.25 3.06
103 104 5.013183 AGTGGTAAAGGCTTAGTGAAGATGT 59.987 40.000 0.00 0.00 34.25 3.06
104 105 5.352569 CAGTGGTAAAGGCTTAGTGAAGATG 59.647 44.000 0.00 0.00 34.25 2.90
106 107 4.802918 GCAGTGGTAAAGGCTTAGTGAAGA 60.803 45.833 0.00 0.00 34.25 2.87
107 108 3.437049 GCAGTGGTAAAGGCTTAGTGAAG 59.563 47.826 0.00 0.00 35.60 3.02
110 111 2.084546 GGCAGTGGTAAAGGCTTAGTG 58.915 52.381 0.00 0.00 0.00 2.74
111 112 1.338769 CGGCAGTGGTAAAGGCTTAGT 60.339 52.381 0.00 0.00 0.00 2.24
112 113 1.369625 CGGCAGTGGTAAAGGCTTAG 58.630 55.000 0.00 0.00 0.00 2.18
113 114 0.675522 GCGGCAGTGGTAAAGGCTTA 60.676 55.000 0.00 0.00 0.00 3.09
114 115 1.971695 GCGGCAGTGGTAAAGGCTT 60.972 57.895 0.00 0.00 0.00 4.35
116 117 2.671619 TGCGGCAGTGGTAAAGGC 60.672 61.111 0.00 0.00 0.00 4.35
118 119 0.951558 AAACTGCGGCAGTGGTAAAG 59.048 50.000 33.94 8.22 44.62 1.85
119 120 0.665835 CAAACTGCGGCAGTGGTAAA 59.334 50.000 33.94 0.00 44.62 2.01
120 121 0.179043 TCAAACTGCGGCAGTGGTAA 60.179 50.000 33.94 17.89 44.62 2.85
121 122 0.602638 CTCAAACTGCGGCAGTGGTA 60.603 55.000 33.94 20.61 44.62 3.25
122 123 1.893808 CTCAAACTGCGGCAGTGGT 60.894 57.895 33.94 22.54 44.62 4.16
123 124 2.620112 CCTCAAACTGCGGCAGTGG 61.620 63.158 33.94 27.26 44.62 4.00
124 125 2.949106 CCTCAAACTGCGGCAGTG 59.051 61.111 33.94 22.81 44.62 3.66
125 126 2.980233 GCCTCAAACTGCGGCAGT 60.980 61.111 28.90 28.90 46.88 4.40
129 130 0.798776 CTACAAGCCTCAAACTGCGG 59.201 55.000 0.00 0.00 0.00 5.69
130 131 0.798776 CCTACAAGCCTCAAACTGCG 59.201 55.000 0.00 0.00 0.00 5.18
132 133 0.798776 CGCCTACAAGCCTCAAACTG 59.201 55.000 0.00 0.00 0.00 3.16
133 134 0.955919 GCGCCTACAAGCCTCAAACT 60.956 55.000 0.00 0.00 0.00 2.66
134 135 1.234615 TGCGCCTACAAGCCTCAAAC 61.235 55.000 4.18 0.00 0.00 2.93
136 137 0.322456 ATTGCGCCTACAAGCCTCAA 60.322 50.000 4.18 0.00 31.96 3.02
141 142 1.330829 GGTAAGATTGCGCCTACAAGC 59.669 52.381 4.18 0.00 36.20 4.01
143 144 1.557832 AGGGTAAGATTGCGCCTACAA 59.442 47.619 4.18 0.00 0.00 2.41
144 145 1.200519 AGGGTAAGATTGCGCCTACA 58.799 50.000 4.18 0.00 0.00 2.74
145 146 2.158943 AGAAGGGTAAGATTGCGCCTAC 60.159 50.000 4.18 0.00 0.00 3.18
148 149 1.300481 GAGAAGGGTAAGATTGCGCC 58.700 55.000 4.18 0.00 0.00 6.53
150 151 3.252974 ACTGAGAAGGGTAAGATTGCG 57.747 47.619 0.00 0.00 0.00 4.85
151 152 4.837972 AGAACTGAGAAGGGTAAGATTGC 58.162 43.478 0.00 0.00 0.00 3.56
152 153 8.314751 TCTAAAGAACTGAGAAGGGTAAGATTG 58.685 37.037 0.00 0.00 0.00 2.67
154 155 8.437274 TTCTAAAGAACTGAGAAGGGTAAGAT 57.563 34.615 0.00 0.00 0.00 2.40
155 156 7.850935 TTCTAAAGAACTGAGAAGGGTAAGA 57.149 36.000 0.00 0.00 0.00 2.10
157 158 9.284968 CATTTTCTAAAGAACTGAGAAGGGTAA 57.715 33.333 0.00 0.00 33.13 2.85
158 159 7.883311 CCATTTTCTAAAGAACTGAGAAGGGTA 59.117 37.037 0.00 0.00 33.13 3.69
160 161 6.349694 GCCATTTTCTAAAGAACTGAGAAGGG 60.350 42.308 0.00 0.00 33.13 3.95
161 162 6.432472 AGCCATTTTCTAAAGAACTGAGAAGG 59.568 38.462 0.00 0.00 33.13 3.46
163 164 8.918202 TTAGCCATTTTCTAAAGAACTGAGAA 57.082 30.769 0.00 0.00 33.13 2.87
165 166 8.553459 TCTTAGCCATTTTCTAAAGAACTGAG 57.447 34.615 0.00 0.00 33.13 3.35
166 167 9.520515 AATCTTAGCCATTTTCTAAAGAACTGA 57.479 29.630 0.00 0.00 33.13 3.41
167 168 9.565213 CAATCTTAGCCATTTTCTAAAGAACTG 57.435 33.333 0.00 0.00 33.13 3.16
168 169 9.520515 TCAATCTTAGCCATTTTCTAAAGAACT 57.479 29.630 0.00 0.00 33.13 3.01
169 170 9.780413 CTCAATCTTAGCCATTTTCTAAAGAAC 57.220 33.333 0.00 0.00 33.13 3.01
171 172 7.557719 CCCTCAATCTTAGCCATTTTCTAAAGA 59.442 37.037 0.00 0.00 0.00 2.52
172 173 7.557719 TCCCTCAATCTTAGCCATTTTCTAAAG 59.442 37.037 0.00 0.00 0.00 1.85
173 174 7.410174 TCCCTCAATCTTAGCCATTTTCTAAA 58.590 34.615 0.00 0.00 0.00 1.85
174 175 6.969043 TCCCTCAATCTTAGCCATTTTCTAA 58.031 36.000 0.00 0.00 0.00 2.10
175 176 6.409695 CCTCCCTCAATCTTAGCCATTTTCTA 60.410 42.308 0.00 0.00 0.00 2.10
176 177 5.444176 CTCCCTCAATCTTAGCCATTTTCT 58.556 41.667 0.00 0.00 0.00 2.52
178 179 4.540715 CCTCCCTCAATCTTAGCCATTTT 58.459 43.478 0.00 0.00 0.00 1.82
179 180 3.117360 CCCTCCCTCAATCTTAGCCATTT 60.117 47.826 0.00 0.00 0.00 2.32
182 183 1.274416 ACCCTCCCTCAATCTTAGCCA 60.274 52.381 0.00 0.00 0.00 4.75
184 185 1.840635 ACACCCTCCCTCAATCTTAGC 59.159 52.381 0.00 0.00 0.00 3.09
185 186 4.962995 TCTAACACCCTCCCTCAATCTTAG 59.037 45.833 0.00 0.00 0.00 2.18
187 188 3.519913 GTCTAACACCCTCCCTCAATCTT 59.480 47.826 0.00 0.00 0.00 2.40
188 189 3.108376 GTCTAACACCCTCCCTCAATCT 58.892 50.000 0.00 0.00 0.00 2.40
189 190 3.108376 AGTCTAACACCCTCCCTCAATC 58.892 50.000 0.00 0.00 0.00 2.67
191 192 2.715763 AGTCTAACACCCTCCCTCAA 57.284 50.000 0.00 0.00 0.00 3.02
192 193 3.012502 ACATAGTCTAACACCCTCCCTCA 59.987 47.826 0.00 0.00 0.00 3.86
193 194 3.644335 ACATAGTCTAACACCCTCCCTC 58.356 50.000 0.00 0.00 0.00 4.30
195 196 6.781507 AGTTATACATAGTCTAACACCCTCCC 59.218 42.308 7.77 0.00 30.78 4.30
196 197 7.836479 AGTTATACATAGTCTAACACCCTCC 57.164 40.000 7.77 0.00 30.78 4.30
197 198 9.134055 AGAAGTTATACATAGTCTAACACCCTC 57.866 37.037 7.77 1.32 30.78 4.30
198 199 8.915036 CAGAAGTTATACATAGTCTAACACCCT 58.085 37.037 7.77 1.06 30.78 4.34
199 200 8.693625 ACAGAAGTTATACATAGTCTAACACCC 58.306 37.037 7.77 0.00 30.78 4.61
224 225 8.798153 GTTGTGTTACAATACGTACATAGGTAC 58.202 37.037 7.62 7.62 42.01 3.34
226 227 6.813152 GGTTGTGTTACAATACGTACATAGGT 59.187 38.462 0.00 0.00 40.59 3.08
227 228 6.812656 TGGTTGTGTTACAATACGTACATAGG 59.187 38.462 0.00 0.00 40.59 2.57
228 229 7.815398 TGGTTGTGTTACAATACGTACATAG 57.185 36.000 0.00 0.00 40.59 2.23
230 231 7.675962 AATGGTTGTGTTACAATACGTACAT 57.324 32.000 0.00 0.00 40.59 2.29
231 232 8.774890 ATAATGGTTGTGTTACAATACGTACA 57.225 30.769 0.00 0.00 40.59 2.90
255 256 9.744125 TTAGGGGTGGCTTATCTCATTATATAT 57.256 33.333 0.00 0.00 0.00 0.86
256 257 9.569074 TTTAGGGGTGGCTTATCTCATTATATA 57.431 33.333 0.00 0.00 0.00 0.86
258 259 7.037586 CCTTTAGGGGTGGCTTATCTCATTATA 60.038 40.741 0.00 0.00 0.00 0.98
259 260 6.240292 CCTTTAGGGGTGGCTTATCTCATTAT 60.240 42.308 0.00 0.00 0.00 1.28
260 261 5.073144 CCTTTAGGGGTGGCTTATCTCATTA 59.927 44.000 0.00 0.00 0.00 1.90
261 262 4.141158 CCTTTAGGGGTGGCTTATCTCATT 60.141 45.833 0.00 0.00 0.00 2.57
262 263 3.395941 CCTTTAGGGGTGGCTTATCTCAT 59.604 47.826 0.00 0.00 0.00 2.90
263 264 2.777692 CCTTTAGGGGTGGCTTATCTCA 59.222 50.000 0.00 0.00 0.00 3.27
264 265 3.493767 CCTTTAGGGGTGGCTTATCTC 57.506 52.381 0.00 0.00 0.00 2.75
277 278 3.344515 GGAACTAGCACAACCCTTTAGG 58.655 50.000 0.00 0.00 43.78 2.69
278 279 3.244770 TGGGAACTAGCACAACCCTTTAG 60.245 47.826 0.00 0.00 40.98 1.85
279 280 2.712087 TGGGAACTAGCACAACCCTTTA 59.288 45.455 0.00 0.00 40.98 1.85
280 281 1.497286 TGGGAACTAGCACAACCCTTT 59.503 47.619 0.00 0.00 40.98 3.11
281 282 1.145571 TGGGAACTAGCACAACCCTT 58.854 50.000 0.00 0.00 40.98 3.95
282 283 1.145571 TTGGGAACTAGCACAACCCT 58.854 50.000 0.00 0.00 40.98 4.34
283 284 1.989706 TTTGGGAACTAGCACAACCC 58.010 50.000 0.00 0.00 40.79 4.11
285 286 4.649088 AAGTTTTGGGAACTAGCACAAC 57.351 40.909 0.00 0.00 29.38 3.32
290 291 6.819397 AGACAATAAGTTTTGGGAACTAGC 57.181 37.500 0.00 0.00 0.00 3.42
291 292 9.280174 TGTAAGACAATAAGTTTTGGGAACTAG 57.720 33.333 0.00 0.00 0.00 2.57
292 293 9.280174 CTGTAAGACAATAAGTTTTGGGAACTA 57.720 33.333 0.00 0.00 34.07 2.24
293 294 7.778382 ACTGTAAGACAATAAGTTTTGGGAACT 59.222 33.333 0.00 0.00 37.43 3.01
294 295 7.937649 ACTGTAAGACAATAAGTTTTGGGAAC 58.062 34.615 0.00 0.00 37.43 3.62
297 298 6.715264 AGGACTGTAAGACAATAAGTTTTGGG 59.285 38.462 0.00 0.00 37.43 4.12
298 299 7.360101 CGAGGACTGTAAGACAATAAGTTTTGG 60.360 40.741 0.00 0.00 37.43 3.28
299 300 7.510630 CGAGGACTGTAAGACAATAAGTTTTG 58.489 38.462 0.00 0.00 37.43 2.44
300 301 6.147328 GCGAGGACTGTAAGACAATAAGTTTT 59.853 38.462 0.00 0.00 37.43 2.43
303 304 4.219944 TGCGAGGACTGTAAGACAATAAGT 59.780 41.667 0.00 0.00 37.43 2.24
305 306 4.021807 TGTGCGAGGACTGTAAGACAATAA 60.022 41.667 0.00 0.00 37.43 1.40
307 308 2.299013 TGTGCGAGGACTGTAAGACAAT 59.701 45.455 0.00 0.00 37.43 2.71
308 309 1.684450 TGTGCGAGGACTGTAAGACAA 59.316 47.619 0.00 0.00 37.43 3.18
310 311 2.433868 TTGTGCGAGGACTGTAAGAC 57.566 50.000 0.00 0.00 37.43 3.01
313 314 2.869801 CTGTTTTGTGCGAGGACTGTAA 59.130 45.455 0.00 0.00 0.00 2.41
316 317 1.261619 GTCTGTTTTGTGCGAGGACTG 59.738 52.381 0.00 0.00 0.00 3.51
317 318 1.139058 AGTCTGTTTTGTGCGAGGACT 59.861 47.619 0.00 0.00 0.00 3.85
1781 8956 1.899814 TGTAGGGCACTTCTCGAATGT 59.100 47.619 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.