Multiple sequence alignment - TraesCS7A01G482000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G482000 chr7A 100.000 3004 0 0 1 3004 674270284 674273287 0.000000e+00 5548
1 TraesCS7A01G482000 chr7B 90.125 2967 159 49 1 2892 650125023 650127930 0.000000e+00 3733
2 TraesCS7A01G482000 chr7B 93.694 111 7 0 2894 3004 650128047 650128157 1.850000e-37 167
3 TraesCS7A01G482000 chr7D 90.947 2419 155 29 1 2383 582298993 582301383 0.000000e+00 3195
4 TraesCS7A01G482000 chr7D 88.889 468 44 6 2426 2892 582301382 582301842 1.210000e-158 569


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G482000 chr7A 674270284 674273287 3003 False 5548 5548 100.0000 1 3004 1 chr7A.!!$F1 3003
1 TraesCS7A01G482000 chr7B 650125023 650128157 3134 False 1950 3733 91.9095 1 3004 2 chr7B.!!$F1 3003
2 TraesCS7A01G482000 chr7D 582298993 582301842 2849 False 1882 3195 89.9180 1 2892 2 chr7D.!!$F1 2891

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.527600 CGTCGCCGGATTGATTCAGA 60.528 55.000 5.05 0.0 0.00 3.27 F
151 152 1.067974 TCGTGTTCTTGCTCGGAAAGA 59.932 47.619 0.00 0.0 31.85 2.52 F
522 539 1.665169 CTTTGTTTTGTGGGCTGTTGC 59.335 47.619 0.00 0.0 38.76 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1218 1253 0.378257 CGCAAATCCTCCACCATTCG 59.622 55.0 0.00 0.0 0.00 3.34 R
1757 1792 0.392193 CAATGTGGAGCGCCTCTTCT 60.392 55.0 8.34 0.0 34.31 2.85 R
2347 2412 0.037447 AGAGCAACCAGAGGGCTTTC 59.963 55.0 0.00 0.0 38.15 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 0.527600 CGTCGCCGGATTGATTCAGA 60.528 55.000 5.05 0.00 0.00 3.27
107 108 6.380079 AGGTGGTATATCTGGATTGGATTC 57.620 41.667 0.00 0.00 0.00 2.52
143 144 1.940613 GGTTCTTGTCGTGTTCTTGCT 59.059 47.619 0.00 0.00 0.00 3.91
151 152 1.067974 TCGTGTTCTTGCTCGGAAAGA 59.932 47.619 0.00 0.00 31.85 2.52
168 169 2.029844 GATAGGATCTTGCCGCCGC 61.030 63.158 0.00 0.00 0.00 6.53
331 333 9.490379 ACTATAAATACAGTATAAAGGCACAGC 57.510 33.333 0.00 0.00 0.00 4.40
355 357 3.503748 GCTCTGGCTTTGTGTTATCTTGT 59.496 43.478 0.00 0.00 35.22 3.16
356 358 4.378874 GCTCTGGCTTTGTGTTATCTTGTC 60.379 45.833 0.00 0.00 35.22 3.18
358 360 6.109156 TCTGGCTTTGTGTTATCTTGTCTA 57.891 37.500 0.00 0.00 0.00 2.59
379 396 9.998106 TGTCTAGCTTATTTTAACTGAGAAAGT 57.002 29.630 0.00 0.00 42.60 2.66
403 420 9.628500 AGTAAAGGGGATCTAAATCAATGTTAC 57.372 33.333 0.00 0.00 33.21 2.50
456 473 7.596248 AGCATATTTTGTTTCAGTACAGCAAAG 59.404 33.333 0.00 0.00 31.87 2.77
522 539 1.665169 CTTTGTTTTGTGGGCTGTTGC 59.335 47.619 0.00 0.00 38.76 4.17
566 584 8.853345 GTGAATAATGTGATTGTTTAGCAGTTG 58.147 33.333 0.00 0.00 0.00 3.16
644 662 5.725325 TTTCAACTGATTGATTCCATGCA 57.275 34.783 0.00 0.00 44.36 3.96
654 672 5.417754 TTGATTCCATGCAAGCCATTTAA 57.582 34.783 0.00 0.00 29.71 1.52
658 676 4.888326 TCCATGCAAGCCATTTAACTTT 57.112 36.364 0.00 0.00 29.71 2.66
670 688 5.466393 GCCATTTAACTTTGCACTGTGAATT 59.534 36.000 12.86 0.00 0.00 2.17
698 717 7.953158 AGCTTGCTTCTTCCTTTAAAATTTC 57.047 32.000 0.00 0.00 0.00 2.17
702 721 9.533253 CTTGCTTCTTCCTTTAAAATTTCTCAA 57.467 29.630 0.00 0.00 0.00 3.02
737 759 4.621034 CCGTTGCAATGAGGAAAAACATAC 59.379 41.667 20.36 0.00 0.00 2.39
739 761 5.343058 CGTTGCAATGAGGAAAAACATACTG 59.657 40.000 13.63 0.00 0.00 2.74
754 776 9.799106 AAAAACATACTGGATATCTATTGGGAG 57.201 33.333 2.05 0.00 0.00 4.30
759 781 4.361367 ACTGGATATCTATTGGGAGGGAGA 59.639 45.833 2.05 0.00 0.00 3.71
774 796 2.031870 GGGAGAGGTTGTTGCTTGTTT 58.968 47.619 0.00 0.00 0.00 2.83
807 829 8.977505 GTTTGATTTCTGCTGTAAAATGCTTAA 58.022 29.630 0.00 0.00 0.00 1.85
872 899 7.798596 AAAATCTCAGTTATATGCAGGAGTG 57.201 36.000 0.00 0.00 0.00 3.51
887 914 6.817184 TGCAGGAGTGGTTAATTAGATACTC 58.183 40.000 12.81 12.81 35.13 2.59
888 915 6.382859 TGCAGGAGTGGTTAATTAGATACTCA 59.617 38.462 18.56 4.84 37.01 3.41
915 944 3.947196 ACATGCCATATGTGTGAATCGTT 59.053 39.130 1.24 0.00 0.00 3.85
922 951 6.203915 GCCATATGTGTGAATCGTTGGTTATA 59.796 38.462 1.24 0.00 0.00 0.98
923 952 7.094805 GCCATATGTGTGAATCGTTGGTTATAT 60.095 37.037 1.24 0.00 0.00 0.86
927 956 7.184800 TGTGTGAATCGTTGGTTATATATGC 57.815 36.000 0.00 0.00 0.00 3.14
931 960 8.931775 TGTGAATCGTTGGTTATATATGCATAC 58.068 33.333 8.99 0.00 0.00 2.39
934 963 6.961359 TCGTTGGTTATATATGCATACTGC 57.039 37.500 8.99 0.00 45.29 4.40
938 967 7.335627 GTTGGTTATATATGCATACTGCCCTA 58.664 38.462 8.99 0.00 44.23 3.53
954 983 6.252995 ACTGCCCTAATTCTTGTTATTTGGA 58.747 36.000 0.00 0.00 31.99 3.53
981 1016 9.719355 TTTGCTGACAGAAGAATATAACTGTTA 57.281 29.630 6.65 2.26 42.45 2.41
1140 1175 3.693085 GCCCTGATTATGATCGAATGCAT 59.307 43.478 0.00 0.00 34.91 3.96
1236 1271 1.750193 TCGAATGGTGGAGGATTTGC 58.250 50.000 0.00 0.00 0.00 3.68
1239 1274 1.818674 GAATGGTGGAGGATTTGCGTT 59.181 47.619 0.00 0.00 0.00 4.84
1266 1301 6.033966 GGATTCATTTGTTAAGGTAAAGCCG 58.966 40.000 0.00 0.00 43.70 5.52
1277 1312 3.681593 AGGTAAAGCCGTTTTGCAGATA 58.318 40.909 0.00 0.00 43.70 1.98
1278 1313 4.270008 AGGTAAAGCCGTTTTGCAGATAT 58.730 39.130 0.00 0.00 43.70 1.63
1279 1314 4.096382 AGGTAAAGCCGTTTTGCAGATATG 59.904 41.667 0.00 0.00 43.70 1.78
1280 1315 3.508744 AAAGCCGTTTTGCAGATATGG 57.491 42.857 0.00 0.00 0.00 2.74
1281 1316 2.418368 AGCCGTTTTGCAGATATGGA 57.582 45.000 7.10 0.00 0.00 3.41
1282 1317 2.722094 AGCCGTTTTGCAGATATGGAA 58.278 42.857 7.10 0.00 0.00 3.53
1324 1359 7.342026 AGTGTTGACCTTTTCATTTTCCTAGTT 59.658 33.333 0.00 0.00 32.84 2.24
1383 1418 7.704789 TGATTACGATGATGAGACATTTGAG 57.295 36.000 0.00 0.00 0.00 3.02
1407 1442 8.324163 AGAAAGTGTTCAAGCGTATTTATTCT 57.676 30.769 0.00 0.00 36.09 2.40
1434 1469 2.021068 GCTCCTCTGCGCCATACTCA 62.021 60.000 4.18 0.00 0.00 3.41
1572 1607 7.420800 GGCTGAATCAGGTTTGATAACATTAG 58.579 38.462 12.66 0.00 43.20 1.73
1574 1609 8.341173 GCTGAATCAGGTTTGATAACATTAGAG 58.659 37.037 12.66 0.00 43.20 2.43
1641 1676 2.611292 GTCACCTGATGCATGTCTTAGC 59.389 50.000 2.46 0.00 0.00 3.09
1703 1738 1.934956 CATCGTCGGCGTCGAGAAG 60.935 63.158 29.72 19.59 46.91 2.85
1714 1749 2.434359 CGAGAAGCCCGACCCAAC 60.434 66.667 0.00 0.00 0.00 3.77
1715 1750 2.434359 GAGAAGCCCGACCCAACG 60.434 66.667 0.00 0.00 0.00 4.10
1811 1846 2.420568 GGACTATGTCCCCGCACGA 61.421 63.158 5.49 0.00 46.19 4.35
1880 1915 0.682855 CCGAGAGCTGGAGGAAGTCT 60.683 60.000 0.00 0.00 0.00 3.24
1886 1921 2.922503 TGGAGGAAGTCTGGCGCA 60.923 61.111 10.83 0.00 0.00 6.09
1892 1927 4.681978 AAGTCTGGCGCACCGGTC 62.682 66.667 10.83 0.00 43.58 4.79
2044 2080 2.138656 CTGTTGTGCTCTTGCTGGGC 62.139 60.000 0.00 0.00 40.48 5.36
2137 2174 4.082679 ACTTGAACTCTGGTAGTAGCTTCG 60.083 45.833 0.00 0.00 37.50 3.79
2141 2178 2.240667 ACTCTGGTAGTAGCTTCGGGTA 59.759 50.000 0.00 0.00 36.36 3.69
2148 2185 1.356938 GTAGCTTCGGGTACTGTTGC 58.643 55.000 0.00 0.00 43.29 4.17
2177 2215 3.489355 TGAATGTGGCAAGTGATTCAGT 58.511 40.909 7.87 0.00 32.40 3.41
2189 2237 0.438830 GATTCAGTCGTGCGACCAAC 59.561 55.000 19.35 5.47 45.59 3.77
2226 2274 9.358406 TCTAATCATGTTTTGCATAATGGAGAT 57.642 29.630 0.00 0.00 35.74 2.75
2270 2318 4.631131 CGTATGAGGTTGATAGGATTGCA 58.369 43.478 0.00 0.00 0.00 4.08
2281 2329 1.221566 GGATTGCAATGTTGGGGGC 59.778 57.895 18.59 0.00 0.00 5.80
2347 2412 1.302511 GTGTGGGCACAGTGGGTAG 60.303 63.158 1.84 0.00 44.64 3.18
2400 2465 2.351924 TTTGGGTCCCACTGTCAGCC 62.352 60.000 11.24 0.00 30.78 4.85
2508 2580 1.903404 AACTGGAAAGGCGCCTTGG 60.903 57.895 40.75 29.45 36.26 3.61
2561 2633 1.816863 TTCTCGCCAGGTGAGACCAC 61.817 60.000 29.35 0.00 46.79 4.16
2601 2673 5.479306 TCTGTCGAGTATTCCCTCAAAAAG 58.521 41.667 0.00 0.00 0.00 2.27
2602 2674 4.575885 TGTCGAGTATTCCCTCAAAAAGG 58.424 43.478 0.00 0.00 45.77 3.11
2612 2684 3.490439 CCTCAAAAAGGGGCAAAATGT 57.510 42.857 0.00 0.00 42.03 2.71
2613 2685 3.402110 CCTCAAAAAGGGGCAAAATGTC 58.598 45.455 0.00 0.00 42.03 3.06
2701 2774 6.755141 CAGAAAATCTATTGTGGCAAGATTGG 59.245 38.462 11.74 1.55 39.34 3.16
2733 2806 4.930963 TGTGTAGTGTGCATTCCTTTTTG 58.069 39.130 0.00 0.00 0.00 2.44
2760 2833 0.729116 CAGTGCTGCTAATTGTCCCG 59.271 55.000 0.00 0.00 0.00 5.14
2817 2896 5.796350 ACCACTACGACAAATATCAAAGC 57.204 39.130 0.00 0.00 0.00 3.51
2841 2921 0.114168 AACTTGCTGCCCCAATGGTA 59.886 50.000 0.00 0.00 36.04 3.25
2892 2972 7.982354 GCATATCCTTCTAGTTCTACACAACTT 59.018 37.037 0.00 0.00 37.75 2.66
2928 3123 0.544697 CGCCACAAGGTAATAGGGGT 59.455 55.000 0.00 0.00 37.19 4.95
2930 3125 2.484241 CGCCACAAGGTAATAGGGGTAC 60.484 54.545 0.00 0.00 37.19 3.34
2947 3142 3.056749 GGGTACGCTTCTCTCTTTCTTCA 60.057 47.826 2.05 0.00 0.00 3.02
2950 3145 2.894126 ACGCTTCTCTCTTTCTTCAGGA 59.106 45.455 0.00 0.00 0.00 3.86
2959 3154 6.325028 TCTCTCTTTCTTCAGGAAAACAGAGA 59.675 38.462 13.07 13.07 45.65 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.004394 GGGAGGATTTCGGTGGAAGTT 59.996 52.381 0.00 0.00 32.80 2.66
41 42 0.764752 CGGCTAGGAGGGGAGGATTT 60.765 60.000 0.00 0.00 0.00 2.17
83 84 6.564152 AGAATCCAATCCAGATATACCACCTT 59.436 38.462 0.00 0.00 0.00 3.50
107 108 8.905702 CGACAAGAACCAAGAAATAAATGAAAG 58.094 33.333 0.00 0.00 0.00 2.62
128 129 0.103390 TCCGAGCAAGAACACGACAA 59.897 50.000 0.00 0.00 0.00 3.18
151 152 2.031163 GCGGCGGCAAGATCCTAT 59.969 61.111 9.78 0.00 39.62 2.57
308 310 7.745620 GGCTGTGCCTTTATACTGTATTTAT 57.254 36.000 5.52 0.00 46.69 1.40
331 333 1.398390 GATAACACAAAGCCAGAGCGG 59.602 52.381 0.00 0.00 46.67 5.52
378 395 8.847196 GGTAACATTGATTTAGATCCCCTTTAC 58.153 37.037 0.00 0.00 0.00 2.01
379 396 8.561769 TGGTAACATTGATTTAGATCCCCTTTA 58.438 33.333 0.00 0.00 46.17 1.85
380 397 7.418378 TGGTAACATTGATTTAGATCCCCTTT 58.582 34.615 0.00 0.00 46.17 3.11
403 420 7.470702 ACTAGTAGTAGTTAATGCAGAGCATGG 60.471 40.741 5.12 0.00 41.62 3.66
456 473 2.484264 AGCAGTTCGCACTCCATTAAAC 59.516 45.455 0.00 0.00 46.13 2.01
543 560 9.577110 CATCAACTGCTAAACAATCACATTATT 57.423 29.630 0.00 0.00 0.00 1.40
599 617 9.859427 GAAATGGTGAGAAATCAAATCACATTA 57.141 29.630 6.86 0.00 44.08 1.90
644 662 4.099266 TCACAGTGCAAAGTTAAATGGCTT 59.901 37.500 0.00 0.00 0.00 4.35
654 672 4.339247 AGCTACAAATTCACAGTGCAAAGT 59.661 37.500 0.00 0.00 0.00 2.66
658 676 3.550639 GCAAGCTACAAATTCACAGTGCA 60.551 43.478 0.00 0.00 0.00 4.57
670 688 6.952773 TTTAAAGGAAGAAGCAAGCTACAA 57.047 33.333 0.00 0.00 0.00 2.41
698 717 4.165779 GCAACGGGTCAATGTAAATTGAG 58.834 43.478 8.66 0.58 40.77 3.02
702 721 4.219507 TCATTGCAACGGGTCAATGTAAAT 59.780 37.500 18.49 0.00 45.76 1.40
703 722 3.570125 TCATTGCAACGGGTCAATGTAAA 59.430 39.130 18.49 4.60 45.76 2.01
710 729 0.109532 TTCCTCATTGCAACGGGTCA 59.890 50.000 0.00 0.00 0.00 4.02
711 730 1.243902 TTTCCTCATTGCAACGGGTC 58.756 50.000 0.00 0.00 0.00 4.46
713 732 2.223923 TGTTTTTCCTCATTGCAACGGG 60.224 45.455 0.00 4.46 0.00 5.28
737 759 4.952845 TCTCCCTCCCAATAGATATCCAG 58.047 47.826 0.00 0.00 0.00 3.86
739 761 4.265078 ACCTCTCCCTCCCAATAGATATCC 60.265 50.000 0.00 0.00 0.00 2.59
747 769 1.355720 CAACAACCTCTCCCTCCCAAT 59.644 52.381 0.00 0.00 0.00 3.16
754 776 1.692411 AACAAGCAACAACCTCTCCC 58.308 50.000 0.00 0.00 0.00 4.30
759 781 1.274728 TGCACAAACAAGCAACAACCT 59.725 42.857 0.00 0.00 37.90 3.50
774 796 3.130869 ACAGCAGAAATCAAACTTGCACA 59.869 39.130 0.00 0.00 0.00 4.57
807 829 9.995003 TGCATGAAAGGAAATAACAGTTTAAAT 57.005 25.926 0.00 0.00 0.00 1.40
887 914 5.816449 TCACACATATGGCATGTACTTTG 57.184 39.130 10.98 1.88 0.00 2.77
888 915 6.238456 CGATTCACACATATGGCATGTACTTT 60.238 38.462 10.98 0.00 0.00 2.66
893 922 3.544684 ACGATTCACACATATGGCATGT 58.455 40.909 10.98 0.00 0.00 3.21
927 956 8.137437 CCAAATAACAAGAATTAGGGCAGTATG 58.863 37.037 0.00 0.00 40.87 2.39
931 960 6.773976 TCCAAATAACAAGAATTAGGGCAG 57.226 37.500 0.00 0.00 0.00 4.85
934 963 8.260114 AGCAAATCCAAATAACAAGAATTAGGG 58.740 33.333 0.00 0.00 0.00 3.53
938 967 8.149647 TGTCAGCAAATCCAAATAACAAGAATT 58.850 29.630 0.00 0.00 0.00 2.17
944 973 6.489700 TCTTCTGTCAGCAAATCCAAATAACA 59.510 34.615 0.00 0.00 0.00 2.41
954 983 8.798859 ACAGTTATATTCTTCTGTCAGCAAAT 57.201 30.769 0.00 0.00 36.59 2.32
981 1016 6.512903 GCGACATGTTTGATGATGATCTGAAT 60.513 38.462 0.00 0.00 0.00 2.57
997 1032 2.196749 CTTCGATAGCAGCGACATGTT 58.803 47.619 0.00 0.00 37.52 2.71
1140 1175 1.624336 ATGCAAGCTTGAAGCCTTCA 58.376 45.000 30.39 16.04 43.77 3.02
1218 1253 0.378257 CGCAAATCCTCCACCATTCG 59.622 55.000 0.00 0.00 0.00 3.34
1239 1274 8.745590 GGCTTTACCTTAACAAATGAATCCTTA 58.254 33.333 0.00 0.00 34.51 2.69
1263 1298 3.715628 ATTCCATATCTGCAAAACGGC 57.284 42.857 0.00 0.00 0.00 5.68
1300 1335 7.654022 AACTAGGAAAATGAAAAGGTCAACA 57.346 32.000 0.00 0.00 40.50 3.33
1347 1382 2.039418 TCGTAATCATAGCCAGCCTGT 58.961 47.619 0.00 0.00 0.00 4.00
1383 1418 7.007456 GCAGAATAAATACGCTTGAACACTTTC 59.993 37.037 0.00 0.00 0.00 2.62
1434 1469 1.242076 GCTGTGCATCAGGAAACACT 58.758 50.000 15.16 0.00 43.78 3.55
1572 1607 2.510768 AAGGTTGTGACTGTCGTCTC 57.489 50.000 2.98 0.00 40.86 3.36
1574 1609 2.933906 TGAAAAGGTTGTGACTGTCGTC 59.066 45.455 2.98 0.00 40.64 4.20
1641 1676 1.068753 CCGAGCCCTAGATGCACAG 59.931 63.158 6.93 0.00 0.00 3.66
1703 1738 1.227176 GTAGATCGTTGGGTCGGGC 60.227 63.158 0.00 0.00 0.00 6.13
1706 1741 2.933495 TCTTGTAGATCGTTGGGTCG 57.067 50.000 0.00 0.00 0.00 4.79
1715 1750 3.433957 TCTCTAGCGCGATCTTGTAGATC 59.566 47.826 12.10 6.61 45.84 2.75
1733 1768 2.683933 ACGTTCCCCGCCATCTCT 60.684 61.111 0.00 0.00 41.42 3.10
1757 1792 0.392193 CAATGTGGAGCGCCTCTTCT 60.392 55.000 8.34 0.00 34.31 2.85
1799 1834 3.950794 GATGCTTCGTGCGGGGACA 62.951 63.158 0.00 0.00 46.63 4.02
2044 2080 0.906756 TCTCCTTGGCTCCCTCACTG 60.907 60.000 0.00 0.00 0.00 3.66
2137 2174 2.544726 GCAGTCAGCAACAGTACCC 58.455 57.895 0.00 0.00 44.79 3.69
2148 2185 1.199327 CTTGCCACATTCAGCAGTCAG 59.801 52.381 0.00 0.00 40.73 3.51
2177 2215 2.736343 ATTCGTCGTTGGTCGCACGA 62.736 55.000 0.00 9.36 44.25 4.35
2189 2237 8.673275 GCAAAACATGATTAGAATTATTCGTCG 58.327 33.333 0.00 0.00 34.02 5.12
2213 2261 8.938801 ACCATGTTAAATATCTCCATTATGCA 57.061 30.769 0.00 0.00 0.00 3.96
2226 2274 4.260579 CGCGATGCAGAACCATGTTAAATA 60.261 41.667 0.00 0.00 0.00 1.40
2237 2285 0.855349 CCTCATACGCGATGCAGAAC 59.145 55.000 15.93 0.00 35.29 3.01
2270 2318 3.138098 AGTTTCAAAATGCCCCCAACATT 59.862 39.130 0.00 0.00 39.38 2.71
2281 2329 7.117236 CACATTCATCTTGGGAGTTTCAAAATG 59.883 37.037 0.00 0.00 30.85 2.32
2347 2412 0.037447 AGAGCAACCAGAGGGCTTTC 59.963 55.000 0.00 0.00 38.15 2.62
2418 2483 6.456988 GCCAATCTTTACTCACCAAACTATCG 60.457 42.308 0.00 0.00 0.00 2.92
2508 2580 3.118482 TCCCAGATGATCTCTTCACTTGC 60.118 47.826 0.00 0.00 37.11 4.01
2569 2641 4.100498 GGAATACTCGACAGAATTACCCCA 59.900 45.833 0.00 0.00 0.00 4.96
2601 2673 4.381932 CCAAATACTCAGACATTTTGCCCC 60.382 45.833 0.00 0.00 0.00 5.80
2602 2674 4.220602 ACCAAATACTCAGACATTTTGCCC 59.779 41.667 0.00 0.00 0.00 5.36
2605 2677 7.970061 CCACATACCAAATACTCAGACATTTTG 59.030 37.037 0.00 0.00 0.00 2.44
2609 2681 6.560003 TCCACATACCAAATACTCAGACAT 57.440 37.500 0.00 0.00 0.00 3.06
2610 2682 6.560003 ATCCACATACCAAATACTCAGACA 57.440 37.500 0.00 0.00 0.00 3.41
2701 2774 2.283298 CACACTACACATCCATCCAGC 58.717 52.381 0.00 0.00 0.00 4.85
2705 2778 3.313526 GGAATGCACACTACACATCCATC 59.686 47.826 0.00 0.00 0.00 3.51
2733 2806 5.473039 ACAATTAGCAGCACTGGAAATTTC 58.527 37.500 9.83 9.83 0.00 2.17
2760 2833 1.276622 TTCTCTCTACCCAGCAACCC 58.723 55.000 0.00 0.00 0.00 4.11
2841 2921 3.044305 GCTGCGCCGTTGTCTCTT 61.044 61.111 4.18 0.00 0.00 2.85
2865 2945 7.124298 AGTTGTGTAGAACTAGAAGGATATGCA 59.876 37.037 0.00 0.00 34.29 3.96
2870 2950 7.784470 AGAAGTTGTGTAGAACTAGAAGGAT 57.216 36.000 0.00 0.00 35.01 3.24
2892 2972 4.697828 TGTGGCGCTGATGTAAAATTTAGA 59.302 37.500 7.64 0.00 0.00 2.10
2928 3123 4.079970 TCCTGAAGAAAGAGAGAAGCGTA 58.920 43.478 0.00 0.00 0.00 4.42
2930 3125 3.584406 TCCTGAAGAAAGAGAGAAGCG 57.416 47.619 0.00 0.00 0.00 4.68
2966 3161 6.841229 TGGAGTAGAACTAGATCACCATGATT 59.159 38.462 0.00 0.00 37.20 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.