Multiple sequence alignment - TraesCS7A01G481500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G481500 chr7A 100.000 6313 0 0 1 6313 674014828 674021140 0.000000e+00 11659
1 TraesCS7A01G481500 chr7B 82.190 2813 269 95 235 2889 649844275 649847013 0.000000e+00 2206
2 TraesCS7A01G481500 chr7B 94.296 561 23 8 4302 4858 649848421 649848976 0.000000e+00 850
3 TraesCS7A01G481500 chr7B 90.523 612 45 5 3375 3984 649847476 649848076 0.000000e+00 797
4 TraesCS7A01G481500 chr7B 88.992 645 30 19 4966 5589 649849044 649849668 0.000000e+00 760
5 TraesCS7A01G481500 chr7B 91.915 470 27 8 5850 6313 649850205 649850669 0.000000e+00 647
6 TraesCS7A01G481500 chr7B 89.972 359 29 7 2891 3246 649847050 649847404 2.070000e-124 457
7 TraesCS7A01G481500 chr7B 90.566 106 9 1 5623 5727 649850066 649850171 8.530000e-29 139
8 TraesCS7A01G481500 chr7D 89.589 1460 79 32 4051 5477 582118941 582120360 0.000000e+00 1786
9 TraesCS7A01G481500 chr7D 91.727 1233 61 19 1699 2892 582116232 582117462 0.000000e+00 1674
10 TraesCS7A01G481500 chr7D 81.066 1257 91 68 259 1464 582115004 582116164 0.000000e+00 867
11 TraesCS7A01G481500 chr7D 91.190 647 37 11 3374 4019 582117920 582118547 0.000000e+00 861
12 TraesCS7A01G481500 chr7D 81.649 861 69 40 5492 6313 582124643 582125453 3.210000e-177 632
13 TraesCS7A01G481500 chr7D 91.117 349 25 5 2891 3236 582117495 582117840 9.580000e-128 468
14 TraesCS7A01G481500 chr7D 88.189 127 6 8 6 126 582114651 582114774 6.600000e-30 143
15 TraesCS7A01G481500 chr6A 93.357 286 19 0 3375 3660 422286024 422285739 2.100000e-114 424
16 TraesCS7A01G481500 chr6A 86.486 333 20 11 2891 3220 422286420 422286110 6.060000e-90 342
17 TraesCS7A01G481500 chr6A 94.231 156 9 0 2735 2890 422286611 422286456 8.180000e-59 239


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G481500 chr7A 674014828 674021140 6312 False 11659.000000 11659 100.000000 1 6313 1 chr7A.!!$F1 6312
1 TraesCS7A01G481500 chr7B 649844275 649850669 6394 False 836.571429 2206 89.779143 235 6313 7 chr7B.!!$F1 6078
2 TraesCS7A01G481500 chr7D 582114651 582120360 5709 False 966.500000 1786 88.813000 6 5477 6 chr7D.!!$F2 5471
3 TraesCS7A01G481500 chr7D 582124643 582125453 810 False 632.000000 632 81.649000 5492 6313 1 chr7D.!!$F1 821
4 TraesCS7A01G481500 chr6A 422285739 422286611 872 True 335.000000 424 91.358000 2735 3660 3 chr6A.!!$R1 925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
762 901 0.179089 TTCCCGTTTCGTTTCGTGGA 60.179 50.0 0.00 0.00 0.00 4.02 F
763 902 0.179089 TCCCGTTTCGTTTCGTGGAA 60.179 50.0 0.00 0.00 0.00 3.53 F
764 903 0.233848 CCCGTTTCGTTTCGTGGAAG 59.766 55.0 0.00 0.00 0.00 3.46 F
766 905 0.302288 CGTTTCGTTTCGTGGAAGCA 59.698 50.0 0.00 0.00 0.00 3.91 F
1113 1304 0.302890 GATCCATTTCGCTGCTGTCG 59.697 55.0 0.00 0.00 0.00 4.35 F
1876 2086 0.319297 GTTAGGTGTTGACGCGACCT 60.319 55.0 15.93 17.85 42.87 3.85 F
3112 3472 0.179215 CGAGGACGTGTACGGTGTAC 60.179 60.0 9.40 0.22 44.95 2.90 F
3320 3682 0.322816 TGCTCACTGAAATCCCTGCC 60.323 55.0 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2742 3030 0.737715 GAGTCGTCATCCACCTGTGC 60.738 60.000 0.00 0.0 0.00 4.57 R
2751 3039 3.036026 ACGCATGTGAGTCGTCATC 57.964 52.632 14.43 0.0 34.36 2.92 R
2771 3059 3.747193 CAGATTGGTGTCGTATTTGTGC 58.253 45.455 0.00 0.0 0.00 4.57 R
2948 3307 4.454678 CCTGCTTATCTTAATCAGCACCA 58.545 43.478 0.00 0.0 37.24 4.17 R
3096 3456 0.109597 CCAGTACACCGTACACGTCC 60.110 60.000 7.02 0.0 37.74 4.79 R
3312 3674 0.103930 TAGGGCTAATGGGCAGGGAT 60.104 55.000 0.00 0.0 42.84 3.85 R
4198 4946 0.599558 TCAAGCAGAGCAACATTGGC 59.400 50.000 0.00 0.0 0.00 4.52 R
5321 6120 0.245539 ACGAACCGACCGATTCACAT 59.754 50.000 0.00 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.752829 GCATGGGCCCATTAAAGCTCTA 60.753 50.000 35.69 2.89 33.90 2.43
26 27 3.352648 GGCCCATTAAAGCTCTAACACA 58.647 45.455 0.00 0.00 0.00 3.72
31 32 4.142902 CCATTAAAGCTCTAACACACACCG 60.143 45.833 0.00 0.00 0.00 4.94
32 33 2.902705 AAAGCTCTAACACACACCGA 57.097 45.000 0.00 0.00 0.00 4.69
33 34 2.440539 AAGCTCTAACACACACCGAG 57.559 50.000 0.00 0.00 0.00 4.63
34 35 1.329256 AGCTCTAACACACACCGAGT 58.671 50.000 0.00 0.00 0.00 4.18
68 69 0.394565 GTGGGGATCCAGGAAGATCG 59.605 60.000 15.23 0.00 45.05 3.69
77 78 1.021202 CAGGAAGATCGCTCTCTCGT 58.979 55.000 0.00 0.00 0.00 4.18
90 91 2.422479 CTCTCTCGTAAACCCGTGATCA 59.578 50.000 0.00 0.00 30.97 2.92
94 95 0.999406 CGTAAACCCGTGATCAGCTG 59.001 55.000 7.63 7.63 0.00 4.24
130 131 2.673976 CGTAACCCGTTTCCAACTTG 57.326 50.000 0.00 0.00 0.00 3.16
131 132 1.941975 CGTAACCCGTTTCCAACTTGT 59.058 47.619 0.00 0.00 0.00 3.16
132 133 2.032636 CGTAACCCGTTTCCAACTTGTC 60.033 50.000 0.00 0.00 0.00 3.18
145 165 3.243201 CCAACTTGTCTGCTTTTCTCCAC 60.243 47.826 0.00 0.00 0.00 4.02
146 166 2.213499 ACTTGTCTGCTTTTCTCCACG 58.787 47.619 0.00 0.00 0.00 4.94
148 168 2.839486 TGTCTGCTTTTCTCCACGAT 57.161 45.000 0.00 0.00 0.00 3.73
153 173 2.813754 CTGCTTTTCTCCACGATCCAAA 59.186 45.455 0.00 0.00 0.00 3.28
163 183 5.008613 TCTCCACGATCCAAAAGAAAAACAG 59.991 40.000 0.00 0.00 0.00 3.16
169 189 5.506317 CGATCCAAAAGAAAAACAGTGCTCT 60.506 40.000 0.00 0.00 0.00 4.09
172 192 5.039333 CCAAAAGAAAAACAGTGCTCTCTG 58.961 41.667 0.00 0.00 40.80 3.35
174 194 4.889832 AAGAAAAACAGTGCTCTCTGTG 57.110 40.909 5.50 0.00 46.25 3.66
186 249 4.193334 TCTGTGGATCGCGCGAGG 62.193 66.667 36.99 20.71 0.00 4.63
223 290 4.980805 GCACCCACGAGCCAACGA 62.981 66.667 0.00 0.00 37.03 3.85
225 292 4.003788 ACCCACGAGCCAACGAGG 62.004 66.667 0.00 0.00 42.01 4.63
286 384 3.012722 CGGGGCCTTGGGTTCCTA 61.013 66.667 0.84 0.00 0.00 2.94
287 385 3.007542 GGGGCCTTGGGTTCCTAG 58.992 66.667 0.84 0.00 0.00 3.02
289 387 1.506907 GGGGCCTTGGGTTCCTAGTT 61.507 60.000 0.84 0.00 0.00 2.24
291 389 0.323451 GGCCTTGGGTTCCTAGTTGG 60.323 60.000 0.00 0.00 37.10 3.77
292 390 0.696501 GCCTTGGGTTCCTAGTTGGA 59.303 55.000 0.00 0.00 44.51 3.53
300 400 3.376082 TCCTAGTTGGAAGGCTCGT 57.624 52.632 0.00 0.00 42.94 4.18
330 430 1.663135 GATTCTTTCAGCTCGCCACTC 59.337 52.381 0.00 0.00 0.00 3.51
333 433 3.226429 TTTCAGCTCGCCACTCGCT 62.226 57.895 0.00 0.00 38.27 4.93
384 503 4.340617 TGGACCACAACTTTTATCCATCC 58.659 43.478 0.00 0.00 31.30 3.51
398 519 2.944129 TCCATCCCGGATCATTTTTCC 58.056 47.619 0.73 0.00 39.64 3.13
400 521 2.424812 CCATCCCGGATCATTTTTCCCT 60.425 50.000 0.73 0.00 36.56 4.20
418 540 4.464008 TCCCTGCCAAAAGATTAGCTATG 58.536 43.478 0.00 0.00 0.00 2.23
525 647 1.987807 GCCTGCCCTGAATCTGCCTA 61.988 60.000 0.00 0.00 0.00 3.93
533 655 0.598419 TGAATCTGCCTATGCGAGCG 60.598 55.000 0.00 0.00 41.78 5.03
539 661 2.281070 CCTATGCGAGCGGCCAAT 60.281 61.111 2.24 0.00 42.61 3.16
566 688 0.960861 TCTGACGACGCAGAGATGGT 60.961 55.000 15.04 0.00 39.84 3.55
632 768 4.436998 CCGTGGTCCGCTGGAGTC 62.437 72.222 7.33 0.00 34.38 3.36
652 788 2.665185 GTTGCGAGACGGCAGGTT 60.665 61.111 0.00 0.00 44.94 3.50
698 834 0.620556 TGGTTCATTCCAGCCTCCTC 59.379 55.000 0.00 0.00 33.19 3.71
712 848 0.742635 CTCCTCCGCTCTGCTTTTCC 60.743 60.000 0.00 0.00 0.00 3.13
726 865 1.067974 CTTTTCCCCGGAAACCAACAC 59.932 52.381 0.73 0.00 42.88 3.32
731 870 0.387565 CCCGGAAACCAACACAAAGG 59.612 55.000 0.73 0.00 0.00 3.11
732 871 1.107945 CCGGAAACCAACACAAAGGT 58.892 50.000 0.00 0.00 40.61 3.50
752 891 4.097863 CGCCCGCTTTCCCGTTTC 62.098 66.667 0.00 0.00 0.00 2.78
753 892 4.097863 GCCCGCTTTCCCGTTTCG 62.098 66.667 0.00 0.00 0.00 3.46
754 893 2.667199 CCCGCTTTCCCGTTTCGT 60.667 61.111 0.00 0.00 0.00 3.85
755 894 2.255881 CCCGCTTTCCCGTTTCGTT 61.256 57.895 0.00 0.00 0.00 3.85
756 895 1.650363 CCGCTTTCCCGTTTCGTTT 59.350 52.632 0.00 0.00 0.00 3.60
757 896 0.385098 CCGCTTTCCCGTTTCGTTTC 60.385 55.000 0.00 0.00 0.00 2.78
758 897 0.720173 CGCTTTCCCGTTTCGTTTCG 60.720 55.000 0.00 0.00 0.00 3.46
759 898 0.305617 GCTTTCCCGTTTCGTTTCGT 59.694 50.000 0.00 0.00 0.00 3.85
760 899 1.918543 GCTTTCCCGTTTCGTTTCGTG 60.919 52.381 0.00 0.00 0.00 4.35
761 900 0.656785 TTTCCCGTTTCGTTTCGTGG 59.343 50.000 0.00 0.00 0.00 4.94
762 901 0.179089 TTCCCGTTTCGTTTCGTGGA 60.179 50.000 0.00 0.00 0.00 4.02
763 902 0.179089 TCCCGTTTCGTTTCGTGGAA 60.179 50.000 0.00 0.00 0.00 3.53
764 903 0.233848 CCCGTTTCGTTTCGTGGAAG 59.766 55.000 0.00 0.00 0.00 3.46
765 904 0.383860 CCGTTTCGTTTCGTGGAAGC 60.384 55.000 0.00 0.00 0.00 3.86
766 905 0.302288 CGTTTCGTTTCGTGGAAGCA 59.698 50.000 0.00 0.00 0.00 3.91
825 966 4.741239 AGACCCCACGGCCTGGAT 62.741 66.667 19.43 9.41 43.95 3.41
834 975 1.445066 CGGCCTGGATCGATCGATG 60.445 63.158 33.86 20.19 34.60 3.84
835 976 1.739562 GGCCTGGATCGATCGATGC 60.740 63.158 34.46 34.46 42.24 3.91
1015 1185 0.767446 CATCATGGCTCCCTCCTCCT 60.767 60.000 0.00 0.00 0.00 3.69
1096 1287 4.129737 CGGTCTCCGGTGCGTGAT 62.130 66.667 0.00 0.00 44.15 3.06
1103 1294 0.742990 TCCGGTGCGTGATCCATTTC 60.743 55.000 0.00 0.00 0.00 2.17
1104 1295 1.348250 CGGTGCGTGATCCATTTCG 59.652 57.895 0.00 0.00 0.00 3.46
1107 1298 4.983090 GCGTGATCCATTTCGCTG 57.017 55.556 0.00 0.00 44.28 5.18
1108 1299 1.297893 GCGTGATCCATTTCGCTGC 60.298 57.895 0.00 0.00 44.28 5.25
1109 1300 1.709147 GCGTGATCCATTTCGCTGCT 61.709 55.000 0.00 0.00 44.28 4.24
1111 1302 1.089920 GTGATCCATTTCGCTGCTGT 58.910 50.000 0.00 0.00 0.00 4.40
1112 1303 1.063174 GTGATCCATTTCGCTGCTGTC 59.937 52.381 0.00 0.00 0.00 3.51
1113 1304 0.302890 GATCCATTTCGCTGCTGTCG 59.697 55.000 0.00 0.00 0.00 4.35
1114 1305 1.091771 ATCCATTTCGCTGCTGTCGG 61.092 55.000 0.00 0.00 0.00 4.79
1116 1307 3.127533 ATTTCGCTGCTGTCGGGC 61.128 61.111 0.00 0.00 0.00 6.13
1117 1308 3.612247 ATTTCGCTGCTGTCGGGCT 62.612 57.895 0.00 0.00 0.00 5.19
1125 1316 3.114616 CTGTCGGGCTGCTTCGTG 61.115 66.667 13.39 4.77 0.00 4.35
1127 1318 3.112709 GTCGGGCTGCTTCGTGTC 61.113 66.667 13.39 5.07 0.00 3.67
1131 1322 2.811317 GGCTGCTTCGTGTCTCCG 60.811 66.667 0.00 0.00 0.00 4.63
1132 1323 2.811317 GCTGCTTCGTGTCTCCGG 60.811 66.667 0.00 0.00 0.00 5.14
1133 1324 2.651361 CTGCTTCGTGTCTCCGGT 59.349 61.111 0.00 0.00 0.00 5.28
1134 1325 1.880894 CTGCTTCGTGTCTCCGGTA 59.119 57.895 0.00 0.00 0.00 4.02
1136 1327 1.153881 GCTTCGTGTCTCCGGTACC 60.154 63.158 0.16 0.16 0.00 3.34
1137 1328 1.136147 CTTCGTGTCTCCGGTACCG 59.864 63.158 27.68 27.68 39.44 4.02
1139 1330 0.677731 TTCGTGTCTCCGGTACCGAT 60.678 55.000 35.41 0.00 42.83 4.18
1140 1331 1.091771 TCGTGTCTCCGGTACCGATC 61.092 60.000 35.41 20.38 42.83 3.69
1141 1332 1.354506 GTGTCTCCGGTACCGATCG 59.645 63.158 35.41 21.20 42.83 3.69
1144 1335 0.453390 GTCTCCGGTACCGATCGTTT 59.547 55.000 35.41 2.86 42.83 3.60
1145 1336 0.452987 TCTCCGGTACCGATCGTTTG 59.547 55.000 35.41 16.55 42.83 2.93
1158 1349 2.804697 TCGTTTGTTCTCACCGATGA 57.195 45.000 0.00 0.00 0.00 2.92
1160 1351 2.993220 TCGTTTGTTCTCACCGATGATG 59.007 45.455 0.00 0.00 33.22 3.07
1164 1355 2.698803 TGTTCTCACCGATGATGGTTG 58.301 47.619 0.00 0.00 41.38 3.77
1168 1359 2.301583 TCTCACCGATGATGGTTGTTGA 59.698 45.455 0.00 0.00 41.38 3.18
1174 1365 3.126858 CCGATGATGGTTGTTGACGAATT 59.873 43.478 0.00 0.00 0.00 2.17
1176 1367 3.913548 TGATGGTTGTTGACGAATTGG 57.086 42.857 0.00 0.00 0.00 3.16
1193 1385 2.373707 GGTCAGATGGGCTGGAGCT 61.374 63.158 0.00 0.00 44.98 4.09
1195 1387 2.192443 CAGATGGGCTGGAGCTGG 59.808 66.667 0.00 0.00 41.07 4.85
1196 1388 2.041762 AGATGGGCTGGAGCTGGA 59.958 61.111 0.00 0.00 41.70 3.86
1198 1390 3.771110 GATGGGCTGGAGCTGGAGC 62.771 68.421 0.00 0.00 41.70 4.70
1291 1483 3.130340 GGTCAGATTCTCTCTCTGTCCAC 59.870 52.174 10.41 0.00 43.86 4.02
1334 1526 3.699538 GGTCTTGGGTTGGGAATATTCAC 59.300 47.826 17.07 14.20 0.00 3.18
1342 1538 4.640647 GGTTGGGAATATTCACAGTTCCTC 59.359 45.833 19.36 8.06 42.38 3.71
1352 1548 1.466167 CACAGTTCCTCATCCGCTTTG 59.534 52.381 0.00 0.00 0.00 2.77
1373 1569 2.368221 GCCAGCTCCAGATATTCAGAGT 59.632 50.000 0.00 0.00 0.00 3.24
1375 1571 4.685575 GCCAGCTCCAGATATTCAGAGTTT 60.686 45.833 0.00 0.00 0.00 2.66
1393 1589 8.378565 TCAGAGTTTCTTGATCCACTTTTCTAT 58.621 33.333 0.00 0.00 0.00 1.98
1402 1598 6.824553 TGATCCACTTTTCTATCTCCAGATG 58.175 40.000 0.00 0.00 36.05 2.90
1403 1599 6.385176 TGATCCACTTTTCTATCTCCAGATGT 59.615 38.462 0.00 0.00 36.05 3.06
1439 1635 8.668353 GTTTGATTGATTATTACTGCACTCTGA 58.332 33.333 0.00 0.00 0.00 3.27
1440 1636 7.776933 TGATTGATTATTACTGCACTCTGAC 57.223 36.000 0.00 0.00 0.00 3.51
1441 1637 7.559486 TGATTGATTATTACTGCACTCTGACT 58.441 34.615 0.00 0.00 0.00 3.41
1442 1638 7.493645 TGATTGATTATTACTGCACTCTGACTG 59.506 37.037 0.00 0.00 0.00 3.51
1443 1639 6.286240 TGATTATTACTGCACTCTGACTGT 57.714 37.500 0.00 0.00 0.00 3.55
1444 1640 6.701340 TGATTATTACTGCACTCTGACTGTT 58.299 36.000 0.00 0.00 0.00 3.16
1445 1641 6.813649 TGATTATTACTGCACTCTGACTGTTC 59.186 38.462 0.00 0.00 0.00 3.18
1446 1642 4.881019 ATTACTGCACTCTGACTGTTCT 57.119 40.909 0.00 0.00 0.00 3.01
1447 1643 5.984695 ATTACTGCACTCTGACTGTTCTA 57.015 39.130 0.00 0.00 0.00 2.10
1448 1644 5.984695 TTACTGCACTCTGACTGTTCTAT 57.015 39.130 0.00 0.00 0.00 1.98
1449 1645 4.185467 ACTGCACTCTGACTGTTCTATG 57.815 45.455 0.00 0.00 0.00 2.23
1450 1646 3.829026 ACTGCACTCTGACTGTTCTATGA 59.171 43.478 0.00 0.00 0.00 2.15
1451 1647 4.465660 ACTGCACTCTGACTGTTCTATGAT 59.534 41.667 0.00 0.00 0.00 2.45
1452 1648 5.003692 TGCACTCTGACTGTTCTATGATC 57.996 43.478 0.00 0.00 0.00 2.92
1453 1649 4.708909 TGCACTCTGACTGTTCTATGATCT 59.291 41.667 0.00 0.00 0.00 2.75
1454 1650 5.186603 TGCACTCTGACTGTTCTATGATCTT 59.813 40.000 0.00 0.00 0.00 2.40
1455 1651 5.748152 GCACTCTGACTGTTCTATGATCTTC 59.252 44.000 0.00 0.00 0.00 2.87
1456 1652 6.626844 GCACTCTGACTGTTCTATGATCTTCA 60.627 42.308 0.00 0.00 0.00 3.02
1457 1653 7.318893 CACTCTGACTGTTCTATGATCTTCAA 58.681 38.462 0.00 0.00 0.00 2.69
1458 1654 7.275341 CACTCTGACTGTTCTATGATCTTCAAC 59.725 40.741 0.00 0.00 0.00 3.18
1459 1655 6.634805 TCTGACTGTTCTATGATCTTCAACC 58.365 40.000 0.00 0.00 0.00 3.77
1460 1656 6.211384 TCTGACTGTTCTATGATCTTCAACCA 59.789 38.462 0.00 0.00 0.00 3.67
1461 1657 6.166279 TGACTGTTCTATGATCTTCAACCAC 58.834 40.000 0.00 0.00 0.00 4.16
1462 1658 6.014242 TGACTGTTCTATGATCTTCAACCACT 60.014 38.462 0.00 0.00 0.00 4.00
1471 1667 6.525578 TGATCTTCAACCACTACTCGTTAT 57.474 37.500 0.00 0.00 0.00 1.89
1493 1689 8.525316 GTTATCTCCTCCTAATTAAGCTCCTAC 58.475 40.741 0.00 0.00 0.00 3.18
1525 1721 0.813821 GAACATCTGGGCTTCCTTGC 59.186 55.000 0.00 0.00 0.00 4.01
1540 1736 5.065988 GCTTCCTTGCTTTCGGTTATATCAA 59.934 40.000 0.00 0.00 0.00 2.57
1568 1764 4.019950 TCCTGAATTCAGAGATTGTGCAGA 60.020 41.667 32.49 16.10 46.59 4.26
1622 1826 5.957842 ATGCCATTTTCTAAGAAACACGA 57.042 34.783 0.00 0.00 0.00 4.35
1631 1835 9.760077 ATTTTCTAAGAAACACGACTTCTCTTA 57.240 29.630 0.00 0.00 31.85 2.10
1668 1872 5.631026 CAGTACACAACATCCATAAACTGC 58.369 41.667 0.00 0.00 0.00 4.40
1672 1876 2.754552 ACAACATCCATAAACTGCGCAT 59.245 40.909 12.24 0.00 0.00 4.73
1673 1877 3.110358 CAACATCCATAAACTGCGCATG 58.890 45.455 12.24 5.60 0.00 4.06
1679 1883 2.326664 CATAAACTGCGCATGTTGCAA 58.673 42.857 20.67 0.00 45.36 4.08
1687 1891 1.387756 GCGCATGTTGCAAATGACTTC 59.612 47.619 19.34 0.89 45.36 3.01
1689 1893 3.311106 CGCATGTTGCAAATGACTTCTT 58.689 40.909 19.34 0.00 45.36 2.52
1692 1896 5.401972 CGCATGTTGCAAATGACTTCTTTTA 59.598 36.000 19.34 0.00 45.36 1.52
1701 1905 6.142958 GCAAATGACTTCTTTTAGCACAAGAC 59.857 38.462 0.00 0.00 29.70 3.01
1703 1907 6.793492 ATGACTTCTTTTAGCACAAGACTC 57.207 37.500 0.00 0.00 29.70 3.36
1704 1908 5.918608 TGACTTCTTTTAGCACAAGACTCT 58.081 37.500 0.00 0.00 29.70 3.24
1777 1985 3.583806 CAAGATGACTTCTCTTCGCACT 58.416 45.455 0.00 0.00 33.70 4.40
1867 2077 9.906660 TTTTAGCAATCAATTAGTTAGGTGTTG 57.093 29.630 0.00 0.00 0.00 3.33
1868 2078 8.856153 TTAGCAATCAATTAGTTAGGTGTTGA 57.144 30.769 0.00 0.00 33.82 3.18
1872 2082 3.676172 TCAATTAGTTAGGTGTTGACGCG 59.324 43.478 3.53 3.53 0.00 6.01
1873 2083 3.581024 ATTAGTTAGGTGTTGACGCGA 57.419 42.857 15.93 0.00 0.00 5.87
1876 2086 0.319297 GTTAGGTGTTGACGCGACCT 60.319 55.000 15.93 17.85 42.87 3.85
1878 2088 0.390124 TAGGTGTTGACGCGACCTTT 59.610 50.000 19.97 1.81 40.67 3.11
1884 2109 2.540931 TGTTGACGCGACCTTTACTTTC 59.459 45.455 15.93 0.00 0.00 2.62
1894 2119 4.084693 CGACCTTTACTTTCTCACGTTTCC 60.085 45.833 0.00 0.00 0.00 3.13
1933 2158 5.614308 TGTGCTTCCTAGTCATTCCATATG 58.386 41.667 0.00 0.00 0.00 1.78
2027 2259 8.786826 TTTTGTAGCCGGATTATAATATCCAG 57.213 34.615 5.05 0.00 43.60 3.86
2053 2285 4.834496 TGAGCAATTTCTGGTTTCCAAGAT 59.166 37.500 0.00 0.00 35.35 2.40
2079 2326 3.058016 TGCTGTATCTTTTGTCTTGCTGC 60.058 43.478 0.00 0.00 0.00 5.25
2130 2381 1.336240 GGCACGTAACTCTAACACCGT 60.336 52.381 0.00 0.00 0.00 4.83
2166 2417 3.949842 CAGATATCTGATGGCGAAGGA 57.050 47.619 25.78 0.00 46.59 3.36
2297 2548 3.184379 TCATTTTCTCACGCTTTCGACTG 59.816 43.478 0.00 0.00 39.41 3.51
2305 2556 1.337817 CGCTTTCGACTGGACTGACG 61.338 60.000 0.00 0.00 38.10 4.35
2321 2572 6.755141 TGGACTGACGTATTTATGCTACTTTC 59.245 38.462 0.00 0.00 0.00 2.62
2369 2620 1.750193 TTCATGGTCGATTTGAGCCC 58.250 50.000 0.73 0.00 44.62 5.19
2428 2686 7.073208 TCCCATATGGTGAGAACTATCAACTA 58.927 38.462 20.46 0.00 37.79 2.24
2430 2688 6.863645 CCATATGGTGAGAACTATCAACTACG 59.136 42.308 14.09 0.00 37.79 3.51
2437 2695 6.089150 GTGAGAACTATCAACTACGTGTTTCC 59.911 42.308 0.00 0.00 36.63 3.13
2443 2701 2.101750 TCAACTACGTGTTTCCTGCTGA 59.898 45.455 0.00 0.00 36.63 4.26
2444 2702 2.869801 CAACTACGTGTTTCCTGCTGAA 59.130 45.455 0.00 0.00 36.63 3.02
2454 2712 6.863126 CGTGTTTCCTGCTGAAATTCTTTTAT 59.137 34.615 5.48 0.00 44.44 1.40
2455 2713 8.020819 CGTGTTTCCTGCTGAAATTCTTTTATA 58.979 33.333 5.48 0.00 44.44 0.98
2457 2715 9.077885 TGTTTCCTGCTGAAATTCTTTTATAGT 57.922 29.630 5.48 0.00 44.44 2.12
2480 2738 3.667497 TCAAAGAGCGATCACTGACTT 57.333 42.857 2.38 0.00 0.00 3.01
2484 2742 5.048013 TCAAAGAGCGATCACTGACTTAAGA 60.048 40.000 10.09 0.00 0.00 2.10
2487 2745 3.452474 AGCGATCACTGACTTAAGATGC 58.548 45.455 10.09 0.00 0.00 3.91
2537 2797 3.558033 TGTCATTGATGCTGGCATGTAT 58.442 40.909 13.04 3.41 36.70 2.29
2540 2800 4.217767 GTCATTGATGCTGGCATGTATGAT 59.782 41.667 21.22 6.34 36.32 2.45
2594 2854 2.894126 TCTGAAGGTCTTGAGAGTCACC 59.106 50.000 0.00 0.00 29.68 4.02
2606 2866 3.118555 TGAGAGTCACCGGAAAACTTCAA 60.119 43.478 9.46 0.00 0.00 2.69
2632 2892 5.134661 GCTCACTAGACCAGTAGAGGTTAT 58.865 45.833 0.00 0.00 43.38 1.89
2634 2894 6.771749 GCTCACTAGACCAGTAGAGGTTATAA 59.228 42.308 0.00 0.00 43.38 0.98
2675 2963 9.120538 CCCAGTTTAATATTGCTGTTACTATGT 57.879 33.333 0.00 0.00 0.00 2.29
2722 3010 2.224499 TGCAATCAGTGAGCTGGTTACA 60.224 45.455 0.00 0.00 43.67 2.41
2742 3030 3.494626 ACACGAGCCATTATCTTATTGCG 59.505 43.478 0.00 0.00 0.00 4.85
2751 3039 1.382522 ATCTTATTGCGCACAGGTGG 58.617 50.000 11.12 0.00 0.00 4.61
2756 3044 1.308069 ATTGCGCACAGGTGGATGAC 61.308 55.000 11.12 0.00 0.00 3.06
2814 3102 3.002759 GCACTGAACTTGTCCTTGTCTTC 59.997 47.826 0.00 0.00 0.00 2.87
2960 3319 7.665559 AGATCTAACTTTTGTGGTGCTGATTAA 59.334 33.333 0.00 0.00 0.00 1.40
2978 3337 1.978454 AAGATAAGCAGGCATGAGGC 58.022 50.000 0.62 0.00 43.74 4.70
2993 3352 3.582998 TGAGGCCTGCTGCTATTTTAT 57.417 42.857 12.00 0.00 40.92 1.40
2995 3354 3.885297 TGAGGCCTGCTGCTATTTTATTC 59.115 43.478 12.00 0.00 40.92 1.75
3020 3379 6.650807 CAGATAACCAGACAAGCTACAAAGAA 59.349 38.462 0.00 0.00 0.00 2.52
3090 3450 4.156455 TGTCCCTTTCCATGCTAATCTC 57.844 45.455 0.00 0.00 0.00 2.75
3096 3456 3.355626 TTCCATGCTAATCTCGACGAG 57.644 47.619 18.91 18.91 0.00 4.18
3100 3460 0.656259 TGCTAATCTCGACGAGGACG 59.344 55.000 23.92 11.48 45.75 4.79
3110 3470 2.949106 CGAGGACGTGTACGGTGT 59.051 61.111 9.40 0.00 44.95 4.16
3111 3471 2.161831 CGAGGACGTGTACGGTGTA 58.838 57.895 9.40 0.00 44.95 2.90
3112 3472 0.179215 CGAGGACGTGTACGGTGTAC 60.179 60.000 9.40 0.22 44.95 2.90
3114 3474 0.877071 AGGACGTGTACGGTGTACTG 59.123 55.000 9.40 4.13 44.95 2.74
3148 3508 1.185315 GGCTAATGGCTTGGCTTTCA 58.815 50.000 5.38 0.00 38.77 2.69
3152 3512 4.363138 GCTAATGGCTTGGCTTTCATTAC 58.637 43.478 0.00 0.00 36.06 1.89
3180 3541 6.054295 AGCTGTCTTGATATTCAGGATTCAC 58.946 40.000 0.00 0.00 34.94 3.18
3222 3584 9.230122 TGTGTTTTGACTTATCATGACATATGT 57.770 29.630 8.43 8.43 34.47 2.29
3236 3598 9.558396 TCATGACATATGTTATTGCATTGTCTA 57.442 29.630 10.30 8.08 37.54 2.59
3246 3608 9.612066 TGTTATTGCATTGTCTATAGATCACAA 57.388 29.630 5.57 6.82 34.61 3.33
3247 3609 9.869844 GTTATTGCATTGTCTATAGATCACAAC 57.130 33.333 5.57 0.00 32.96 3.32
3248 3610 6.925610 TTGCATTGTCTATAGATCACAACC 57.074 37.500 5.57 2.87 32.96 3.77
3249 3611 6.239217 TGCATTGTCTATAGATCACAACCT 57.761 37.500 5.57 0.00 32.96 3.50
3250 3612 6.051074 TGCATTGTCTATAGATCACAACCTG 58.949 40.000 5.57 4.32 32.96 4.00
3251 3613 5.049818 GCATTGTCTATAGATCACAACCTGC 60.050 44.000 5.57 9.88 32.96 4.85
3252 3614 5.675684 TTGTCTATAGATCACAACCTGCA 57.324 39.130 5.57 0.00 0.00 4.41
3253 3615 5.876651 TGTCTATAGATCACAACCTGCAT 57.123 39.130 5.57 0.00 0.00 3.96
3254 3616 6.239217 TGTCTATAGATCACAACCTGCATT 57.761 37.500 5.57 0.00 0.00 3.56
3255 3617 6.653020 TGTCTATAGATCACAACCTGCATTT 58.347 36.000 5.57 0.00 0.00 2.32
3256 3618 7.791029 TGTCTATAGATCACAACCTGCATTTA 58.209 34.615 5.57 0.00 0.00 1.40
3257 3619 8.264347 TGTCTATAGATCACAACCTGCATTTAA 58.736 33.333 5.57 0.00 0.00 1.52
3258 3620 8.552034 GTCTATAGATCACAACCTGCATTTAAC 58.448 37.037 5.57 0.00 0.00 2.01
3259 3621 8.486210 TCTATAGATCACAACCTGCATTTAACT 58.514 33.333 0.00 0.00 0.00 2.24
3260 3622 7.944729 ATAGATCACAACCTGCATTTAACTT 57.055 32.000 0.00 0.00 0.00 2.66
3261 3623 6.655078 AGATCACAACCTGCATTTAACTTT 57.345 33.333 0.00 0.00 0.00 2.66
3262 3624 6.681777 AGATCACAACCTGCATTTAACTTTC 58.318 36.000 0.00 0.00 0.00 2.62
3263 3625 4.854399 TCACAACCTGCATTTAACTTTCG 58.146 39.130 0.00 0.00 0.00 3.46
3264 3626 4.576873 TCACAACCTGCATTTAACTTTCGA 59.423 37.500 0.00 0.00 0.00 3.71
3265 3627 5.240623 TCACAACCTGCATTTAACTTTCGAT 59.759 36.000 0.00 0.00 0.00 3.59
3266 3628 6.428465 TCACAACCTGCATTTAACTTTCGATA 59.572 34.615 0.00 0.00 0.00 2.92
3267 3629 7.120579 TCACAACCTGCATTTAACTTTCGATAT 59.879 33.333 0.00 0.00 0.00 1.63
3268 3630 7.218773 CACAACCTGCATTTAACTTTCGATATG 59.781 37.037 0.00 0.00 0.00 1.78
3269 3631 5.821204 ACCTGCATTTAACTTTCGATATGC 58.179 37.500 0.00 0.00 38.97 3.14
3270 3632 5.356751 ACCTGCATTTAACTTTCGATATGCA 59.643 36.000 0.00 0.00 44.12 3.96
3271 3633 6.039717 ACCTGCATTTAACTTTCGATATGCAT 59.960 34.615 3.79 3.79 44.89 3.96
3272 3634 6.580041 CCTGCATTTAACTTTCGATATGCATC 59.420 38.462 0.19 0.00 44.89 3.91
3273 3635 7.025485 TGCATTTAACTTTCGATATGCATCA 57.975 32.000 0.19 0.00 42.21 3.07
3274 3636 6.912051 TGCATTTAACTTTCGATATGCATCAC 59.088 34.615 0.19 0.00 42.21 3.06
3275 3637 7.134815 GCATTTAACTTTCGATATGCATCACT 58.865 34.615 0.19 0.00 38.51 3.41
3276 3638 7.112565 GCATTTAACTTTCGATATGCATCACTG 59.887 37.037 0.19 0.00 38.51 3.66
3295 3657 5.473066 ACTGCTAAAGTGCCAATTGATTT 57.527 34.783 7.12 5.25 37.88 2.17
3296 3658 6.588719 ACTGCTAAAGTGCCAATTGATTTA 57.411 33.333 7.12 6.08 37.88 1.40
3297 3659 6.389906 ACTGCTAAAGTGCCAATTGATTTAC 58.610 36.000 7.12 0.39 37.88 2.01
3298 3660 6.209391 ACTGCTAAAGTGCCAATTGATTTACT 59.791 34.615 7.12 2.76 37.88 2.24
3299 3661 7.393234 ACTGCTAAAGTGCCAATTGATTTACTA 59.607 33.333 7.12 0.00 37.88 1.82
3300 3662 8.292444 TGCTAAAGTGCCAATTGATTTACTAT 57.708 30.769 7.12 0.00 0.00 2.12
3301 3663 8.748412 TGCTAAAGTGCCAATTGATTTACTATT 58.252 29.630 7.12 5.82 0.00 1.73
3302 3664 9.023967 GCTAAAGTGCCAATTGATTTACTATTG 57.976 33.333 7.12 0.00 39.88 1.90
3303 3665 7.832503 AAAGTGCCAATTGATTTACTATTGC 57.167 32.000 7.12 0.00 39.25 3.56
3304 3666 6.780457 AGTGCCAATTGATTTACTATTGCT 57.220 33.333 7.12 0.00 39.25 3.91
3305 3667 6.799512 AGTGCCAATTGATTTACTATTGCTC 58.200 36.000 7.12 0.00 39.25 4.26
3306 3668 6.377996 AGTGCCAATTGATTTACTATTGCTCA 59.622 34.615 7.12 0.00 39.25 4.26
3307 3669 6.473455 GTGCCAATTGATTTACTATTGCTCAC 59.527 38.462 7.12 0.00 39.25 3.51
3308 3670 6.377996 TGCCAATTGATTTACTATTGCTCACT 59.622 34.615 7.12 0.00 39.25 3.41
3309 3671 6.694411 GCCAATTGATTTACTATTGCTCACTG 59.306 38.462 7.12 0.00 39.25 3.66
3310 3672 7.415541 GCCAATTGATTTACTATTGCTCACTGA 60.416 37.037 7.12 0.00 39.25 3.41
3311 3673 8.461222 CCAATTGATTTACTATTGCTCACTGAA 58.539 33.333 7.12 0.00 39.25 3.02
3312 3674 9.844790 CAATTGATTTACTATTGCTCACTGAAA 57.155 29.630 0.00 0.00 35.70 2.69
3315 3677 8.213518 TGATTTACTATTGCTCACTGAAATCC 57.786 34.615 0.00 0.00 33.24 3.01
3316 3678 7.283127 TGATTTACTATTGCTCACTGAAATCCC 59.717 37.037 0.00 0.00 33.24 3.85
3317 3679 4.851639 ACTATTGCTCACTGAAATCCCT 57.148 40.909 0.00 0.00 0.00 4.20
3318 3680 4.521146 ACTATTGCTCACTGAAATCCCTG 58.479 43.478 0.00 0.00 0.00 4.45
3319 3681 1.538047 TTGCTCACTGAAATCCCTGC 58.462 50.000 0.00 0.00 0.00 4.85
3320 3682 0.322816 TGCTCACTGAAATCCCTGCC 60.323 55.000 0.00 0.00 0.00 4.85
3321 3683 1.034292 GCTCACTGAAATCCCTGCCC 61.034 60.000 0.00 0.00 0.00 5.36
3324 3686 1.358787 TCACTGAAATCCCTGCCCATT 59.641 47.619 0.00 0.00 0.00 3.16
3325 3687 2.580322 TCACTGAAATCCCTGCCCATTA 59.420 45.455 0.00 0.00 0.00 1.90
3328 3690 1.332195 GAAATCCCTGCCCATTAGCC 58.668 55.000 0.00 0.00 0.00 3.93
3332 3694 0.768221 TCCCTGCCCATTAGCCCTAG 60.768 60.000 0.00 0.00 0.00 3.02
3336 3698 1.072965 CTGCCCATTAGCCCTAGGAAG 59.927 57.143 11.48 0.00 0.00 3.46
3348 3710 5.337788 AGCCCTAGGAAGGTCTGAATATAG 58.662 45.833 11.48 0.00 41.89 1.31
3349 3711 5.076598 AGCCCTAGGAAGGTCTGAATATAGA 59.923 44.000 11.48 0.00 41.89 1.98
3404 3784 1.682684 ATTCAGCGACGAGGAGGGT 60.683 57.895 0.00 0.00 0.00 4.34
3520 3900 2.038689 TGCATAAACCAACCGGACTACA 59.961 45.455 9.46 0.00 35.59 2.74
3582 3965 1.717032 ACTTCTCCAGTGGCACTACA 58.283 50.000 21.59 8.69 32.83 2.74
3591 3974 3.466836 CAGTGGCACTACAGTTCAAGAA 58.533 45.455 21.59 0.00 0.00 2.52
3593 3976 3.134804 AGTGGCACTACAGTTCAAGAAGT 59.865 43.478 20.61 0.00 0.00 3.01
3654 4037 1.071699 GGTCAAGTCAAGTACAGCCCA 59.928 52.381 0.00 0.00 0.00 5.36
3660 4043 1.066787 GTCAAGTACAGCCCAGAGTCC 60.067 57.143 0.00 0.00 0.00 3.85
3684 4067 4.532521 GTGGGGAGCTATGTTGAGGTATAT 59.467 45.833 0.00 0.00 0.00 0.86
3699 4082 9.035607 GTTGAGGTATATAGGATTTGCATATCG 57.964 37.037 10.50 0.00 0.00 2.92
3704 4087 8.552034 GGTATATAGGATTTGCATATCGCTTTC 58.448 37.037 10.50 0.00 43.06 2.62
3705 4088 9.098355 GTATATAGGATTTGCATATCGCTTTCA 57.902 33.333 10.50 0.00 43.06 2.69
3712 4095 5.657470 TTGCATATCGCTTTCATGTAGTC 57.343 39.130 0.00 0.00 43.06 2.59
3715 4098 2.293677 ATCGCTTTCATGTAGTCGCA 57.706 45.000 0.00 0.00 0.00 5.10
3716 4099 1.346365 TCGCTTTCATGTAGTCGCAC 58.654 50.000 0.00 0.00 0.00 5.34
3719 4102 2.069273 GCTTTCATGTAGTCGCACACT 58.931 47.619 0.00 0.00 39.41 3.55
3721 4104 3.317150 CTTTCATGTAGTCGCACACTCA 58.683 45.455 0.00 0.00 36.43 3.41
3722 4105 2.347697 TCATGTAGTCGCACACTCAC 57.652 50.000 0.00 0.00 36.43 3.51
3723 4106 1.611491 TCATGTAGTCGCACACTCACA 59.389 47.619 0.00 0.00 36.43 3.58
3724 4107 2.231235 TCATGTAGTCGCACACTCACAT 59.769 45.455 0.00 0.00 36.43 3.21
3725 4108 2.812358 TGTAGTCGCACACTCACATT 57.188 45.000 0.00 0.00 36.43 2.71
3743 4126 9.915629 ACTCACATTAAGAAGTTCAGTACTTAG 57.084 33.333 5.50 0.00 47.00 2.18
3746 4129 8.865001 CACATTAAGAAGTTCAGTACTTAGAGC 58.135 37.037 5.50 0.00 47.00 4.09
3749 4132 8.874744 TTAAGAAGTTCAGTACTTAGAGCCTA 57.125 34.615 5.50 0.00 47.00 3.93
3757 4140 9.465985 GTTCAGTACTTAGAGCCTATGTTTATC 57.534 37.037 0.00 0.00 0.00 1.75
3759 4142 8.851145 TCAGTACTTAGAGCCTATGTTTATCTG 58.149 37.037 0.00 0.00 0.00 2.90
3761 4144 9.203163 AGTACTTAGAGCCTATGTTTATCTGTT 57.797 33.333 0.00 0.00 0.00 3.16
3762 4145 9.819267 GTACTTAGAGCCTATGTTTATCTGTTT 57.181 33.333 6.22 0.00 0.00 2.83
3869 4252 0.447406 CGCGATTGAAGGTGCATTCA 59.553 50.000 0.00 0.00 37.41 2.57
3895 4278 5.283060 TCTCTGCTATTTTTGTTTCGCTC 57.717 39.130 0.00 0.00 0.00 5.03
3941 4324 9.927668 ATCTTAAGACCAAAACATAACCAAATG 57.072 29.630 7.48 0.00 0.00 2.32
3946 4329 7.791029 AGACCAAAACATAACCAAATGAAACT 58.209 30.769 0.00 0.00 0.00 2.66
3983 4366 5.962433 ACGAAGTAGTATTGCACACTATGT 58.038 37.500 9.88 5.36 41.94 2.29
3996 4379 6.042777 TGCACACTATGTCACTATCTAAAGC 58.957 40.000 0.00 0.00 0.00 3.51
4025 4408 8.021955 GCTTTTGCAAAATAATCAACTAAGCT 57.978 30.769 24.06 0.00 46.58 3.74
4026 4409 9.139174 GCTTTTGCAAAATAATCAACTAAGCTA 57.861 29.630 24.06 0.00 46.58 3.32
4028 4411 8.980143 TTTGCAAAATAATCAACTAAGCTACC 57.020 30.769 10.02 0.00 0.00 3.18
4030 4413 6.183360 TGCAAAATAATCAACTAAGCTACCGG 60.183 38.462 0.00 0.00 0.00 5.28
4031 4414 6.725246 CAAAATAATCAACTAAGCTACCGGG 58.275 40.000 6.32 0.00 0.00 5.73
4041 4770 3.066190 CTACCGGGTCAGCGGTCA 61.066 66.667 6.32 0.00 39.45 4.02
4055 4802 5.795441 GTCAGCGGTCATTCTTTTATGTTTC 59.205 40.000 0.00 0.00 0.00 2.78
4069 4816 9.897744 TCTTTTATGTTTCAGCAAAGAATGTAG 57.102 29.630 0.00 0.00 31.94 2.74
4171 4919 9.239002 CAGATTAAGAATTACTCCTAGTGAACG 57.761 37.037 0.00 0.00 31.30 3.95
4173 4921 5.997384 AAGAATTACTCCTAGTGAACGGT 57.003 39.130 0.00 0.00 0.00 4.83
4174 4922 8.579850 TTAAGAATTACTCCTAGTGAACGGTA 57.420 34.615 0.00 0.00 0.00 4.02
4175 4923 6.448207 AGAATTACTCCTAGTGAACGGTAC 57.552 41.667 0.00 0.00 0.00 3.34
4176 4924 6.186234 AGAATTACTCCTAGTGAACGGTACT 58.814 40.000 0.00 0.00 0.00 2.73
4178 4926 2.444421 ACTCCTAGTGAACGGTACTGG 58.556 52.381 6.65 0.00 0.00 4.00
4179 4927 2.040813 ACTCCTAGTGAACGGTACTGGA 59.959 50.000 6.65 0.90 0.00 3.86
4181 4929 1.749634 CCTAGTGAACGGTACTGGAGG 59.250 57.143 6.65 0.00 0.00 4.30
4186 4934 2.830704 GAACGGTACTGGAGGCACGG 62.831 65.000 6.65 0.00 0.00 4.94
4198 4946 3.036084 GCACGGGTATCGCCATCG 61.036 66.667 0.00 0.00 43.89 3.84
4203 4951 1.302511 GGGTATCGCCATCGCCAAT 60.303 57.895 0.00 0.00 39.65 3.16
4213 4961 0.524816 CATCGCCAATGTTGCTCTGC 60.525 55.000 0.00 0.00 0.00 4.26
4218 4966 1.668047 GCCAATGTTGCTCTGCTTGAC 60.668 52.381 0.00 0.00 0.00 3.18
4220 4968 2.230508 CCAATGTTGCTCTGCTTGACAT 59.769 45.455 0.00 0.00 32.31 3.06
4221 4969 3.305813 CCAATGTTGCTCTGCTTGACATT 60.306 43.478 10.90 10.90 37.55 2.71
4222 4970 3.570926 ATGTTGCTCTGCTTGACATTG 57.429 42.857 0.00 0.00 28.95 2.82
4223 4971 2.574450 TGTTGCTCTGCTTGACATTGA 58.426 42.857 0.00 0.00 0.00 2.57
4224 4972 3.151554 TGTTGCTCTGCTTGACATTGAT 58.848 40.909 0.00 0.00 0.00 2.57
4225 4973 4.325972 TGTTGCTCTGCTTGACATTGATA 58.674 39.130 0.00 0.00 0.00 2.15
4226 4974 4.154737 TGTTGCTCTGCTTGACATTGATAC 59.845 41.667 0.00 0.00 0.00 2.24
4227 4975 4.212143 TGCTCTGCTTGACATTGATACT 57.788 40.909 0.00 0.00 0.00 2.12
4228 4976 3.937079 TGCTCTGCTTGACATTGATACTG 59.063 43.478 0.00 0.00 0.00 2.74
4251 5001 1.582389 ATTCAGGCCTTCTGCTCTCT 58.418 50.000 0.00 0.00 43.06 3.10
4253 5003 1.449956 CAGGCCTTCTGCTCTCTGC 60.450 63.158 0.00 0.00 40.92 4.26
4254 5004 1.613035 AGGCCTTCTGCTCTCTGCT 60.613 57.895 0.00 0.00 43.37 4.24
4262 5012 4.217983 CCTTCTGCTCTCTGCTTGATTTTT 59.782 41.667 0.00 0.00 43.37 1.94
4264 5014 4.139786 TCTGCTCTCTGCTTGATTTTTGT 58.860 39.130 0.00 0.00 43.37 2.83
4265 5015 5.308014 TCTGCTCTCTGCTTGATTTTTGTA 58.692 37.500 0.00 0.00 43.37 2.41
4280 5030 1.549243 TTGTATGGCCGGTGCTCTGA 61.549 55.000 1.90 0.00 37.74 3.27
4288 5038 1.151668 CCGGTGCTCTGAACTGAAAG 58.848 55.000 0.00 0.00 42.29 2.62
4352 5103 1.486726 CCAAATCGACCCCTAGCTCTT 59.513 52.381 0.00 0.00 0.00 2.85
4401 5152 5.288804 TGCTTAGAATTTGTTGGCTGTTTC 58.711 37.500 0.00 0.00 0.00 2.78
4643 5394 1.108776 CCAGCAATGTCATTCCAGGG 58.891 55.000 0.00 0.00 0.00 4.45
4654 5405 0.929244 ATTCCAGGGCAGGTAAGCAT 59.071 50.000 0.00 0.00 35.83 3.79
4655 5406 0.704076 TTCCAGGGCAGGTAAGCATT 59.296 50.000 0.00 0.00 35.83 3.56
4657 5408 1.919654 TCCAGGGCAGGTAAGCATTTA 59.080 47.619 0.00 0.00 35.83 1.40
4665 5434 4.035675 GGCAGGTAAGCATTTATCACTGTC 59.964 45.833 0.00 0.00 35.83 3.51
4668 5437 6.722301 CAGGTAAGCATTTATCACTGTCATG 58.278 40.000 0.00 0.00 0.00 3.07
4674 5443 5.124457 AGCATTTATCACTGTCATGACCAAC 59.876 40.000 22.85 0.00 0.00 3.77
4688 5457 3.625853 TGACCAACTTGTCATTGTCCAA 58.374 40.909 0.00 0.00 40.22 3.53
4709 5478 2.351322 CGATCGAGTCGCCTCACG 60.351 66.667 10.26 5.11 44.33 4.35
4751 5527 2.018542 ATTTCACGGTGGACATACGG 57.981 50.000 8.50 0.00 0.00 4.02
4873 5649 1.482954 GTAGGGGGACTGTACCTGAC 58.517 60.000 9.36 1.03 35.84 3.51
4943 5740 1.268743 GCTGCACGCTTTCTTTTGAGT 60.269 47.619 0.00 0.00 35.14 3.41
4969 5766 3.428999 GCTGAGCAGAACTGAACCGTATA 60.429 47.826 0.00 0.00 0.00 1.47
4972 5769 5.109210 TGAGCAGAACTGAACCGTATATTG 58.891 41.667 5.97 0.00 0.00 1.90
5285 6082 4.430423 GCGCTGCTCCGTTTCGTG 62.430 66.667 0.00 0.00 0.00 4.35
5321 6120 1.266718 GCCGAGCTGTGAAATGTGAAA 59.733 47.619 0.00 0.00 0.00 2.69
5322 6121 2.095059 GCCGAGCTGTGAAATGTGAAAT 60.095 45.455 0.00 0.00 0.00 2.17
5323 6122 3.495193 CCGAGCTGTGAAATGTGAAATG 58.505 45.455 0.00 0.00 0.00 2.32
5324 6123 3.058016 CCGAGCTGTGAAATGTGAAATGT 60.058 43.478 0.00 0.00 0.00 2.71
5325 6124 3.910170 CGAGCTGTGAAATGTGAAATGTG 59.090 43.478 0.00 0.00 0.00 3.21
5326 6125 4.319694 CGAGCTGTGAAATGTGAAATGTGA 60.320 41.667 0.00 0.00 0.00 3.58
5329 6128 6.154445 AGCTGTGAAATGTGAAATGTGAATC 58.846 36.000 0.00 0.00 0.00 2.52
5437 6238 6.274157 TCTCTTCGCTGAGACTCTTTATTT 57.726 37.500 3.68 0.00 38.08 1.40
5455 6258 3.902162 TACGAACGGTGTGAGCGGC 62.902 63.158 0.00 0.00 44.33 6.53
5477 6280 2.990479 GGGTTGGATGGAGAGCGT 59.010 61.111 0.00 0.00 0.00 5.07
5478 6281 1.450312 GGGTTGGATGGAGAGCGTG 60.450 63.158 0.00 0.00 0.00 5.34
5480 6283 2.109126 GTTGGATGGAGAGCGTGCC 61.109 63.158 0.00 0.00 0.00 5.01
5538 6357 4.380973 CGGCTTCAATAGAGTCTCAGAACA 60.381 45.833 0.00 0.00 0.00 3.18
5589 6409 4.452733 GGAGAACCGGTCCTGCGG 62.453 72.222 8.04 0.00 0.00 5.69
5591 6411 3.934391 GAGAACCGGTCCTGCGGTG 62.934 68.421 8.04 0.00 38.64 4.94
5599 6419 1.664965 GTCCTGCGGTGTGTCTCAC 60.665 63.158 0.00 0.00 45.47 3.51
5611 6431 5.381164 GTGTGTCTCACGTATGATTCATG 57.619 43.478 9.46 0.00 37.14 3.07
5612 6432 4.864806 GTGTGTCTCACGTATGATTCATGT 59.135 41.667 9.46 0.00 37.14 3.21
5613 6433 6.033966 GTGTGTCTCACGTATGATTCATGTA 58.966 40.000 9.46 0.00 37.14 2.29
5614 6434 6.020599 GTGTGTCTCACGTATGATTCATGTAC 60.021 42.308 9.46 0.00 37.14 2.90
5615 6435 5.171516 GTGTCTCACGTATGATTCATGTACG 59.828 44.000 16.57 16.57 44.78 3.67
5618 6438 7.041644 TGTCTCACGTATGATTCATGTACGATA 60.042 37.037 22.36 12.03 42.65 2.92
5619 6439 7.963465 GTCTCACGTATGATTCATGTACGATAT 59.037 37.037 22.36 4.14 42.65 1.63
5620 6440 7.962918 TCTCACGTATGATTCATGTACGATATG 59.037 37.037 22.36 13.47 42.65 1.78
5621 6441 7.590279 TCACGTATGATTCATGTACGATATGT 58.410 34.615 22.36 5.87 42.65 2.29
5622 6442 7.749126 TCACGTATGATTCATGTACGATATGTC 59.251 37.037 22.36 0.00 42.65 3.06
5623 6443 7.750903 CACGTATGATTCATGTACGATATGTCT 59.249 37.037 22.36 2.42 42.65 3.41
5624 6444 7.963465 ACGTATGATTCATGTACGATATGTCTC 59.037 37.037 22.36 0.00 42.65 3.36
5636 6820 6.313744 ACGATATGTCTCACGTATGATTCA 57.686 37.500 0.00 0.00 37.22 2.57
5705 6889 9.197306 AGAGTTTATTTAATTACATGGAACCCC 57.803 33.333 0.00 0.00 0.00 4.95
5723 6908 4.680407 ACCCCCATAAAAAGTCCCTAAAC 58.320 43.478 0.00 0.00 0.00 2.01
5727 6912 6.605995 CCCCCATAAAAAGTCCCTAAACTTAG 59.394 42.308 0.00 0.00 38.52 2.18
5747 6932 4.028993 AGAAAATATTGGTCCCACACGT 57.971 40.909 0.00 0.00 0.00 4.49
5754 6940 0.759959 TGGTCCCACACGTTGTATGT 59.240 50.000 0.00 0.00 0.00 2.29
5756 6942 1.435577 GTCCCACACGTTGTATGTCC 58.564 55.000 0.00 0.00 0.00 4.02
5757 6943 1.049402 TCCCACACGTTGTATGTCCA 58.951 50.000 0.00 0.00 0.00 4.02
5769 6955 7.062371 CACGTTGTATGTCCAAGAAAAACAAAA 59.938 33.333 0.00 0.00 0.00 2.44
5770 6956 7.599245 ACGTTGTATGTCCAAGAAAAACAAAAA 59.401 29.630 0.00 0.00 0.00 1.94
5771 6957 8.599774 CGTTGTATGTCCAAGAAAAACAAAAAT 58.400 29.630 0.00 0.00 0.00 1.82
5772 6958 9.701355 GTTGTATGTCCAAGAAAAACAAAAATG 57.299 29.630 0.00 0.00 0.00 2.32
5773 6959 8.430801 TGTATGTCCAAGAAAAACAAAAATGG 57.569 30.769 0.00 0.00 0.00 3.16
5775 6961 7.790823 ATGTCCAAGAAAAACAAAAATGGAG 57.209 32.000 0.00 0.00 36.25 3.86
5776 6962 6.112058 TGTCCAAGAAAAACAAAAATGGAGG 58.888 36.000 0.00 0.00 36.25 4.30
5778 6964 6.257849 GTCCAAGAAAAACAAAAATGGAGGAC 59.742 38.462 0.00 0.00 36.25 3.85
5784 6975 6.729690 AAAACAAAAATGGAGGACTGATCA 57.270 33.333 0.00 0.00 0.00 2.92
5785 6976 5.712152 AACAAAAATGGAGGACTGATCAC 57.288 39.130 0.00 0.00 0.00 3.06
5791 6982 4.498520 AGGACTGATCACGCGCGG 62.499 66.667 35.22 22.52 0.00 6.46
5818 7009 3.198489 GCTAACTGCGAGGCCTGC 61.198 66.667 12.00 15.54 0.00 4.85
5820 7011 3.315142 CTAACTGCGAGGCCTGCCA 62.315 63.158 12.00 5.77 38.92 4.92
5822 7013 2.593468 TAACTGCGAGGCCTGCCATC 62.593 60.000 12.00 0.00 38.92 3.51
5834 7039 4.884257 GCCATCGCGCGGTAGGAA 62.884 66.667 31.69 9.99 0.00 3.36
5838 7043 2.846652 ATCGCGCGGTAGGAAGAGG 61.847 63.158 31.69 0.00 0.00 3.69
6244 7468 9.235537 GCGTAGGTTGAACAAAAAGTTATTTAA 57.764 29.630 0.00 0.00 41.51 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.077687 AGAGCTTTAATGGGCCCATG 57.922 50.000 38.06 25.25 36.68 3.66
2 3 3.052944 TGTTAGAGCTTTAATGGGCCCAT 60.053 43.478 32.75 32.75 38.46 4.00
3 4 2.310349 TGTTAGAGCTTTAATGGGCCCA 59.690 45.455 30.92 30.92 0.00 5.36
4 5 2.688446 GTGTTAGAGCTTTAATGGGCCC 59.312 50.000 17.59 17.59 0.00 5.80
5 6 3.128764 GTGTGTTAGAGCTTTAATGGGCC 59.871 47.826 0.00 0.00 0.00 5.80
6 7 3.756434 TGTGTGTTAGAGCTTTAATGGGC 59.244 43.478 0.00 0.00 0.00 5.36
7 8 4.156008 GGTGTGTGTTAGAGCTTTAATGGG 59.844 45.833 0.00 0.00 0.00 4.00
8 9 4.142902 CGGTGTGTGTTAGAGCTTTAATGG 60.143 45.833 0.00 0.00 0.00 3.16
9 10 4.688879 TCGGTGTGTGTTAGAGCTTTAATG 59.311 41.667 0.00 0.00 0.00 1.90
11 12 4.202182 ACTCGGTGTGTGTTAGAGCTTTAA 60.202 41.667 0.00 0.00 32.60 1.52
13 14 2.102588 ACTCGGTGTGTGTTAGAGCTTT 59.897 45.455 0.00 0.00 32.60 3.51
14 15 1.687123 ACTCGGTGTGTGTTAGAGCTT 59.313 47.619 0.00 0.00 32.60 3.74
15 16 1.000163 CACTCGGTGTGTGTTAGAGCT 60.000 52.381 2.15 0.00 41.53 4.09
39 40 3.280968 ATCCCCACCCAAACCCCC 61.281 66.667 0.00 0.00 0.00 5.40
44 45 0.778078 TTCCTGGATCCCCACCCAAA 60.778 55.000 9.90 0.00 37.58 3.28
68 69 0.524862 TCACGGGTTTACGAGAGAGC 59.475 55.000 0.00 0.00 37.61 4.09
77 78 1.207089 CTCCAGCTGATCACGGGTTTA 59.793 52.381 17.39 0.00 0.00 2.01
90 91 0.320247 CTCGCAACAGAACTCCAGCT 60.320 55.000 0.00 0.00 0.00 4.24
94 95 0.318784 ACGTCTCGCAACAGAACTCC 60.319 55.000 0.00 0.00 0.00 3.85
126 127 2.158957 TCGTGGAGAAAAGCAGACAAGT 60.159 45.455 0.00 0.00 0.00 3.16
127 128 2.483876 TCGTGGAGAAAAGCAGACAAG 58.516 47.619 0.00 0.00 0.00 3.16
130 131 2.003301 GGATCGTGGAGAAAAGCAGAC 58.997 52.381 0.00 0.00 0.00 3.51
131 132 1.623311 TGGATCGTGGAGAAAAGCAGA 59.377 47.619 0.00 0.00 0.00 4.26
132 133 2.099141 TGGATCGTGGAGAAAAGCAG 57.901 50.000 0.00 0.00 0.00 4.24
145 165 4.610945 AGCACTGTTTTTCTTTTGGATCG 58.389 39.130 0.00 0.00 0.00 3.69
146 166 5.836347 AGAGCACTGTTTTTCTTTTGGATC 58.164 37.500 0.00 0.00 0.00 3.36
148 168 4.949856 AGAGAGCACTGTTTTTCTTTTGGA 59.050 37.500 0.00 0.00 0.00 3.53
163 183 1.875813 CGCGATCCACAGAGAGCAC 60.876 63.158 0.00 0.00 0.00 4.40
169 189 4.193334 CCTCGCGCGATCCACAGA 62.193 66.667 34.86 8.36 0.00 3.41
286 384 0.693049 ATCCAACGAGCCTTCCAACT 59.307 50.000 0.00 0.00 0.00 3.16
287 385 1.468914 GAATCCAACGAGCCTTCCAAC 59.531 52.381 0.00 0.00 0.00 3.77
289 387 0.035439 GGAATCCAACGAGCCTTCCA 60.035 55.000 0.00 0.00 36.28 3.53
291 389 1.066143 TCTGGAATCCAACGAGCCTTC 60.066 52.381 2.61 0.00 30.80 3.46
292 390 0.984230 TCTGGAATCCAACGAGCCTT 59.016 50.000 2.61 0.00 30.80 4.35
300 400 4.927049 AGCTGAAAGAATCTGGAATCCAA 58.073 39.130 2.61 0.00 34.07 3.53
330 430 2.294791 TGGTTAAAAATGTGGTCCAGCG 59.705 45.455 0.00 0.00 0.00 5.18
333 433 3.552875 TCGTGGTTAAAAATGTGGTCCA 58.447 40.909 0.00 0.00 0.00 4.02
334 434 3.816523 TCTCGTGGTTAAAAATGTGGTCC 59.183 43.478 0.00 0.00 0.00 4.46
336 436 5.768164 AGAATCTCGTGGTTAAAAATGTGGT 59.232 36.000 0.00 0.00 0.00 4.16
384 503 0.746659 GGCAGGGAAAAATGATCCGG 59.253 55.000 0.00 0.00 37.87 5.14
391 510 5.249163 AGCTAATCTTTTGGCAGGGAAAAAT 59.751 36.000 0.00 0.00 41.45 1.82
398 519 3.005155 GCCATAGCTAATCTTTTGGCAGG 59.995 47.826 22.98 3.27 45.17 4.85
484 606 3.552478 CGCATCTGATCTACAGCATGACT 60.552 47.826 0.00 0.00 45.38 3.41
485 607 2.730404 CGCATCTGATCTACAGCATGAC 59.270 50.000 0.00 0.00 45.38 3.06
487 609 1.459975 GCGCATCTGATCTACAGCATG 59.540 52.381 0.30 0.00 45.38 4.06
488 610 1.607509 GGCGCATCTGATCTACAGCAT 60.608 52.381 10.83 0.00 45.38 3.79
489 611 0.249615 GGCGCATCTGATCTACAGCA 60.250 55.000 10.83 0.00 45.38 4.41
490 612 0.033228 AGGCGCATCTGATCTACAGC 59.967 55.000 10.83 0.00 45.38 4.40
491 613 1.780806 CAGGCGCATCTGATCTACAG 58.219 55.000 10.83 0.00 46.97 2.74
492 614 0.249615 GCAGGCGCATCTGATCTACA 60.250 55.000 16.59 0.00 36.93 2.74
493 615 0.948141 GGCAGGCGCATCTGATCTAC 60.948 60.000 16.59 0.00 41.24 2.59
494 616 1.368950 GGCAGGCGCATCTGATCTA 59.631 57.895 16.59 0.00 41.24 1.98
495 617 2.110627 GGCAGGCGCATCTGATCT 59.889 61.111 16.59 0.00 41.24 2.75
496 618 2.976903 GGGCAGGCGCATCTGATC 60.977 66.667 16.59 8.01 41.24 2.92
497 619 3.486685 AGGGCAGGCGCATCTGAT 61.487 61.111 16.59 0.23 41.24 2.90
498 620 4.478371 CAGGGCAGGCGCATCTGA 62.478 66.667 16.59 0.00 40.95 3.27
539 661 3.872728 CGTCGTCAGATCGGGCGA 61.873 66.667 18.57 18.57 34.12 5.54
619 755 3.222354 AACACGACTCCAGCGGACC 62.222 63.158 0.00 0.00 0.00 4.46
632 768 3.767230 CTGCCGTCTCGCAACACG 61.767 66.667 0.00 0.00 45.62 4.49
652 788 2.904866 GGAACGTGGCAGGCAACA 60.905 61.111 7.17 0.00 41.41 3.33
681 817 0.462759 CGGAGGAGGCTGGAATGAAC 60.463 60.000 0.00 0.00 0.00 3.18
698 834 3.127533 CGGGGAAAAGCAGAGCGG 61.128 66.667 0.00 0.00 0.00 5.52
712 848 0.387565 CCTTTGTGTTGGTTTCCGGG 59.612 55.000 0.00 0.00 0.00 5.73
726 865 3.498401 AAAGCGGGCGCAACCTTTG 62.498 57.895 10.83 0.00 44.88 2.77
747 886 0.302288 TGCTTCCACGAAACGAAACG 59.698 50.000 0.00 0.00 0.00 3.60
748 887 1.333791 CCTGCTTCCACGAAACGAAAC 60.334 52.381 0.00 0.00 0.00 2.78
751 890 0.105224 TTCCTGCTTCCACGAAACGA 59.895 50.000 0.00 0.00 0.00 3.85
752 891 0.512952 CTTCCTGCTTCCACGAAACG 59.487 55.000 0.00 0.00 0.00 3.60
753 892 0.238553 GCTTCCTGCTTCCACGAAAC 59.761 55.000 0.00 0.00 38.95 2.78
754 893 0.179032 TGCTTCCTGCTTCCACGAAA 60.179 50.000 0.00 0.00 43.37 3.46
755 894 0.603707 CTGCTTCCTGCTTCCACGAA 60.604 55.000 0.00 0.00 43.37 3.85
756 895 1.004560 CTGCTTCCTGCTTCCACGA 60.005 57.895 0.00 0.00 43.37 4.35
757 896 1.004560 TCTGCTTCCTGCTTCCACG 60.005 57.895 0.00 0.00 43.37 4.94
758 897 1.304509 GCTCTGCTTCCTGCTTCCAC 61.305 60.000 0.00 0.00 43.37 4.02
759 898 1.002868 GCTCTGCTTCCTGCTTCCA 60.003 57.895 0.00 0.00 43.37 3.53
760 899 2.105466 CGCTCTGCTTCCTGCTTCC 61.105 63.158 0.00 0.00 43.37 3.46
761 900 1.375268 ACGCTCTGCTTCCTGCTTC 60.375 57.895 0.00 0.00 43.37 3.86
762 901 1.670406 CACGCTCTGCTTCCTGCTT 60.670 57.895 0.00 0.00 43.37 3.91
763 902 2.047465 CACGCTCTGCTTCCTGCT 60.047 61.111 0.00 0.00 43.37 4.24
764 903 3.797546 GCACGCTCTGCTTCCTGC 61.798 66.667 0.00 0.00 43.33 4.85
814 955 2.147315 ATCGATCGATCCAGGCCGTG 62.147 60.000 24.60 3.23 0.00 4.94
815 956 1.903890 ATCGATCGATCCAGGCCGT 60.904 57.895 24.60 0.00 0.00 5.68
825 966 2.721859 CCTCGTGGCATCGATCGA 59.278 61.111 21.86 21.86 39.12 3.59
835 976 2.811317 GCTCTCGTTGCCTCGTGG 60.811 66.667 0.00 0.00 0.00 4.94
1015 1185 2.680352 GAGCACGGAGGTGGAGGA 60.680 66.667 0.00 0.00 44.54 3.71
1080 1271 2.202756 GATCACGCACCGGAGACC 60.203 66.667 9.46 0.00 0.00 3.85
1096 1287 1.741401 CCGACAGCAGCGAAATGGA 60.741 57.895 0.00 0.00 0.00 3.41
1108 1299 3.114616 CACGAAGCAGCCCGACAG 61.115 66.667 11.28 0.00 0.00 3.51
1109 1300 3.858868 GACACGAAGCAGCCCGACA 62.859 63.158 11.28 0.00 0.00 4.35
1111 1302 3.282745 GAGACACGAAGCAGCCCGA 62.283 63.158 11.28 0.00 0.00 5.14
1112 1303 2.811317 GAGACACGAAGCAGCCCG 60.811 66.667 3.50 3.50 0.00 6.13
1113 1304 2.435059 GGAGACACGAAGCAGCCC 60.435 66.667 0.00 0.00 0.00 5.19
1114 1305 2.811317 CGGAGACACGAAGCAGCC 60.811 66.667 0.00 0.00 35.47 4.85
1116 1307 0.456312 GTACCGGAGACACGAAGCAG 60.456 60.000 9.46 0.00 35.47 4.24
1117 1308 1.582968 GTACCGGAGACACGAAGCA 59.417 57.895 9.46 0.00 35.47 3.91
1118 1309 1.153881 GGTACCGGAGACACGAAGC 60.154 63.158 9.46 0.00 35.47 3.86
1119 1310 1.136147 CGGTACCGGAGACACGAAG 59.864 63.158 27.00 0.00 35.47 3.79
1120 1311 0.677731 ATCGGTACCGGAGACACGAA 60.678 55.000 32.80 11.72 40.25 3.85
1121 1312 1.078214 ATCGGTACCGGAGACACGA 60.078 57.895 32.80 12.49 40.25 4.35
1124 1315 0.677731 AACGATCGGTACCGGAGACA 60.678 55.000 32.80 14.85 40.25 3.41
1125 1316 0.453390 AAACGATCGGTACCGGAGAC 59.547 55.000 32.80 19.42 40.25 3.36
1127 1318 0.171903 ACAAACGATCGGTACCGGAG 59.828 55.000 32.80 24.51 40.25 4.63
1131 1322 2.665052 GTGAGAACAAACGATCGGTACC 59.335 50.000 20.98 0.16 0.00 3.34
1132 1323 2.665052 GGTGAGAACAAACGATCGGTAC 59.335 50.000 20.98 5.70 0.00 3.34
1133 1324 2.669113 CGGTGAGAACAAACGATCGGTA 60.669 50.000 20.98 0.00 32.88 4.02
1134 1325 1.792006 GGTGAGAACAAACGATCGGT 58.208 50.000 20.98 10.86 0.00 4.69
1136 1327 1.693467 TCGGTGAGAACAAACGATCG 58.307 50.000 14.88 14.88 34.49 3.69
1137 1328 3.250744 TCATCGGTGAGAACAAACGATC 58.749 45.455 0.00 0.00 42.24 3.69
1139 1330 2.804697 TCATCGGTGAGAACAAACGA 57.195 45.000 0.00 0.00 40.15 3.85
1140 1331 2.094258 CCATCATCGGTGAGAACAAACG 59.906 50.000 3.97 0.00 37.87 3.60
1141 1332 3.074412 ACCATCATCGGTGAGAACAAAC 58.926 45.455 3.97 0.00 38.07 2.93
1144 1335 2.038426 ACAACCATCATCGGTGAGAACA 59.962 45.455 3.97 0.00 39.95 3.18
1145 1336 2.699954 ACAACCATCATCGGTGAGAAC 58.300 47.619 3.97 0.00 39.95 3.01
1158 1349 3.218453 TGACCAATTCGTCAACAACCAT 58.782 40.909 3.17 0.00 39.78 3.55
1160 1351 2.875933 TCTGACCAATTCGTCAACAACC 59.124 45.455 7.33 0.00 42.06 3.77
1164 1355 2.420022 CCCATCTGACCAATTCGTCAAC 59.580 50.000 7.33 0.00 42.06 3.18
1168 1359 0.620556 AGCCCATCTGACCAATTCGT 59.379 50.000 0.00 0.00 0.00 3.85
1174 1365 2.673200 GCTCCAGCCCATCTGACCA 61.673 63.158 0.00 0.00 45.72 4.02
1176 1367 1.153208 CAGCTCCAGCCCATCTGAC 60.153 63.158 0.00 0.00 45.72 3.51
1193 1385 1.984570 CCGTCTCCTCCAAGCTCCA 60.985 63.158 0.00 0.00 0.00 3.86
1195 1387 2.185608 GCCGTCTCCTCCAAGCTC 59.814 66.667 0.00 0.00 0.00 4.09
1196 1388 3.394836 GGCCGTCTCCTCCAAGCT 61.395 66.667 0.00 0.00 0.00 3.74
1198 1390 0.970937 TACAGGCCGTCTCCTCCAAG 60.971 60.000 0.00 0.00 33.25 3.61
1199 1391 1.077805 TACAGGCCGTCTCCTCCAA 59.922 57.895 0.00 0.00 33.25 3.53
1200 1392 1.681327 GTACAGGCCGTCTCCTCCA 60.681 63.158 0.00 0.00 33.25 3.86
1334 1526 0.449388 GCAAAGCGGATGAGGAACTG 59.551 55.000 0.00 0.00 41.55 3.16
1352 1548 2.368221 ACTCTGAATATCTGGAGCTGGC 59.632 50.000 0.00 0.00 0.00 4.85
1373 1569 7.689299 TGGAGATAGAAAAGTGGATCAAGAAA 58.311 34.615 0.00 0.00 0.00 2.52
1375 1571 6.669591 TCTGGAGATAGAAAAGTGGATCAAGA 59.330 38.462 0.00 0.00 0.00 3.02
1393 1589 3.184628 ACAAGATTCCCACATCTGGAGA 58.815 45.455 0.00 0.00 40.55 3.71
1439 1635 6.365970 AGTGGTTGAAGATCATAGAACAGT 57.634 37.500 0.00 0.00 0.00 3.55
1440 1636 7.551585 AGTAGTGGTTGAAGATCATAGAACAG 58.448 38.462 0.00 0.00 0.00 3.16
1441 1637 7.482169 AGTAGTGGTTGAAGATCATAGAACA 57.518 36.000 0.00 0.00 0.00 3.18
1442 1638 6.693545 CGAGTAGTGGTTGAAGATCATAGAAC 59.306 42.308 0.00 0.00 0.00 3.01
1443 1639 6.377429 ACGAGTAGTGGTTGAAGATCATAGAA 59.623 38.462 0.00 0.00 0.00 2.10
1444 1640 5.886474 ACGAGTAGTGGTTGAAGATCATAGA 59.114 40.000 0.00 0.00 0.00 1.98
1445 1641 6.137794 ACGAGTAGTGGTTGAAGATCATAG 57.862 41.667 0.00 0.00 0.00 2.23
1446 1642 6.525578 AACGAGTAGTGGTTGAAGATCATA 57.474 37.500 0.00 0.00 0.00 2.15
1447 1643 5.407407 AACGAGTAGTGGTTGAAGATCAT 57.593 39.130 0.00 0.00 0.00 2.45
1448 1644 4.866508 AACGAGTAGTGGTTGAAGATCA 57.133 40.909 0.00 0.00 0.00 2.92
1449 1645 6.797454 AGATAACGAGTAGTGGTTGAAGATC 58.203 40.000 8.10 3.66 0.00 2.75
1450 1646 6.183360 GGAGATAACGAGTAGTGGTTGAAGAT 60.183 42.308 8.10 0.00 0.00 2.40
1451 1647 5.125097 GGAGATAACGAGTAGTGGTTGAAGA 59.875 44.000 8.10 0.00 0.00 2.87
1452 1648 5.125739 AGGAGATAACGAGTAGTGGTTGAAG 59.874 44.000 8.10 0.00 0.00 3.02
1453 1649 5.014858 AGGAGATAACGAGTAGTGGTTGAA 58.985 41.667 8.10 0.00 0.00 2.69
1454 1650 4.597004 AGGAGATAACGAGTAGTGGTTGA 58.403 43.478 8.10 0.00 0.00 3.18
1455 1651 4.202030 GGAGGAGATAACGAGTAGTGGTTG 60.202 50.000 8.10 0.00 0.00 3.77
1456 1652 3.952967 GGAGGAGATAACGAGTAGTGGTT 59.047 47.826 3.33 3.33 0.00 3.67
1457 1653 3.202595 AGGAGGAGATAACGAGTAGTGGT 59.797 47.826 0.00 0.00 0.00 4.16
1458 1654 3.822940 AGGAGGAGATAACGAGTAGTGG 58.177 50.000 0.00 0.00 0.00 4.00
1459 1655 7.513371 AATTAGGAGGAGATAACGAGTAGTG 57.487 40.000 0.00 0.00 0.00 2.74
1460 1656 9.287373 CTTAATTAGGAGGAGATAACGAGTAGT 57.713 37.037 0.00 0.00 0.00 2.73
1461 1657 8.238631 GCTTAATTAGGAGGAGATAACGAGTAG 58.761 40.741 0.00 0.00 0.00 2.57
1462 1658 7.943447 AGCTTAATTAGGAGGAGATAACGAGTA 59.057 37.037 0.00 0.00 0.00 2.59
1471 1667 6.027025 TGTAGGAGCTTAATTAGGAGGAGA 57.973 41.667 0.00 0.00 0.00 3.71
1493 1689 5.114780 CCCAGATGTTCTTCTGTGTATCTG 58.885 45.833 12.43 0.00 41.30 2.90
1540 1736 4.256920 CAATCTCTGAATTCAGGAACGGT 58.743 43.478 30.33 13.39 43.91 4.83
1598 1802 7.336931 AGTCGTGTTTCTTAGAAAATGGCATAT 59.663 33.333 9.14 0.00 0.00 1.78
1603 1807 7.171678 AGAGAAGTCGTGTTTCTTAGAAAATGG 59.828 37.037 9.14 1.93 35.14 3.16
1615 1819 4.585955 TCTGCTAAGAGAAGTCGTGTTT 57.414 40.909 0.00 0.00 0.00 2.83
1622 1826 4.934602 GCACAATCTTCTGCTAAGAGAAGT 59.065 41.667 10.38 5.38 46.27 3.01
1631 1835 3.070018 GTGTACTGCACAATCTTCTGCT 58.930 45.455 0.00 0.00 46.91 4.24
1648 1852 3.126171 GCGCAGTTTATGGATGTTGTGTA 59.874 43.478 0.30 0.00 0.00 2.90
1657 1861 1.135431 GCAACATGCGCAGTTTATGGA 60.135 47.619 18.32 0.00 31.71 3.41
1672 1876 5.748152 GTGCTAAAAGAAGTCATTTGCAACA 59.252 36.000 0.00 0.00 29.76 3.33
1673 1877 5.748152 TGTGCTAAAAGAAGTCATTTGCAAC 59.252 36.000 0.00 0.00 29.76 4.17
1679 1883 6.995091 AGAGTCTTGTGCTAAAAGAAGTCATT 59.005 34.615 0.00 0.00 35.50 2.57
1687 1891 3.812053 ACTGCAGAGTCTTGTGCTAAAAG 59.188 43.478 23.35 2.22 43.58 2.27
1689 1893 3.475566 ACTGCAGAGTCTTGTGCTAAA 57.524 42.857 23.35 0.00 43.58 1.85
1692 1896 1.336332 CGTACTGCAGAGTCTTGTGCT 60.336 52.381 23.35 0.00 43.58 4.40
1777 1985 5.013079 AGTTTTGTGTATGAGATGGTCTCCA 59.987 40.000 4.65 0.00 42.73 3.86
1867 2077 2.407696 GTGAGAAAGTAAAGGTCGCGTC 59.592 50.000 5.77 0.00 0.00 5.19
1868 2078 2.401351 GTGAGAAAGTAAAGGTCGCGT 58.599 47.619 5.77 0.00 0.00 6.01
1872 2082 4.812626 TGGAAACGTGAGAAAGTAAAGGTC 59.187 41.667 0.00 0.00 0.00 3.85
1873 2083 4.773013 TGGAAACGTGAGAAAGTAAAGGT 58.227 39.130 0.00 0.00 0.00 3.50
1876 2086 7.562454 AAAGATGGAAACGTGAGAAAGTAAA 57.438 32.000 0.00 0.00 0.00 2.01
1878 2088 7.066525 ACAAAAAGATGGAAACGTGAGAAAGTA 59.933 33.333 0.00 0.00 0.00 2.24
1884 2109 4.670621 CGAACAAAAAGATGGAAACGTGAG 59.329 41.667 0.00 0.00 0.00 3.51
1894 2119 5.117592 GGAAGCACAATCGAACAAAAAGATG 59.882 40.000 0.00 0.00 0.00 2.90
1933 2158 7.041098 CCAAAACAGGGCATGTAGTATAAGATC 60.041 40.741 4.75 0.00 43.00 2.75
1941 2166 1.923356 CCCAAAACAGGGCATGTAGT 58.077 50.000 4.75 0.00 43.00 2.73
1994 2221 3.149005 TCCGGCTACAAAAGGTGAAAT 57.851 42.857 0.00 0.00 0.00 2.17
2027 2259 3.256558 GGAAACCAGAAATTGCTCATGC 58.743 45.455 0.00 0.00 40.20 4.06
2053 2285 4.261155 GCAAGACAAAAGATACAGCACACA 60.261 41.667 0.00 0.00 0.00 3.72
2079 2326 1.741706 CTGAACTGCTATGGTGCCAAG 59.258 52.381 0.00 0.00 0.00 3.61
2130 2381 7.871853 CAGATATCTGAATCATGCAATCAACA 58.128 34.615 25.78 0.00 46.59 3.33
2166 2417 3.519510 TCAGGAATGTCCTTTCGAGGAAT 59.480 43.478 0.00 0.00 46.91 3.01
2297 2548 6.979238 AGAAAGTAGCATAAATACGTCAGTCC 59.021 38.462 0.00 0.00 0.00 3.85
2305 2556 8.837389 CCCACCTTTAGAAAGTAGCATAAATAC 58.163 37.037 1.56 0.00 34.20 1.89
2321 2572 4.160252 CCCATTTGATCAACCCACCTTTAG 59.840 45.833 7.89 0.00 0.00 1.85
2369 2620 4.054671 GAGCCTTATCTGTCGAATTGGAG 58.945 47.826 0.00 0.00 0.00 3.86
2454 2712 6.095580 AGTCAGTGATCGCTCTTTGATTACTA 59.904 38.462 5.62 0.00 39.73 1.82
2455 2713 5.105554 AGTCAGTGATCGCTCTTTGATTACT 60.106 40.000 5.62 0.00 41.66 2.24
2457 2715 5.330455 AGTCAGTGATCGCTCTTTGATTA 57.670 39.130 5.62 0.00 0.00 1.75
2469 2727 5.181748 ACAAGGCATCTTAAGTCAGTGATC 58.818 41.667 1.63 0.00 0.00 2.92
2537 2797 5.945784 GCATATAATACCCAAAGCTCCATCA 59.054 40.000 0.00 0.00 0.00 3.07
2540 2800 4.323417 CGCATATAATACCCAAAGCTCCA 58.677 43.478 0.00 0.00 0.00 3.86
2594 2854 2.618709 AGTGAGCCTTTGAAGTTTTCCG 59.381 45.455 0.00 0.00 0.00 4.30
2606 2866 3.626222 CCTCTACTGGTCTAGTGAGCCTT 60.626 52.174 0.00 0.00 40.65 4.35
2643 2903 5.772672 ACAGCAATATTAAACTGGGAACACA 59.227 36.000 13.74 0.00 34.40 3.72
2649 2909 9.120538 ACATAGTAACAGCAATATTAAACTGGG 57.879 33.333 13.74 0.00 34.40 4.45
2722 3010 2.480419 GCGCAATAAGATAATGGCTCGT 59.520 45.455 0.30 0.00 0.00 4.18
2742 3030 0.737715 GAGTCGTCATCCACCTGTGC 60.738 60.000 0.00 0.00 0.00 4.57
2751 3039 3.036026 ACGCATGTGAGTCGTCATC 57.964 52.632 14.43 0.00 34.36 2.92
2771 3059 3.747193 CAGATTGGTGTCGTATTTGTGC 58.253 45.455 0.00 0.00 0.00 4.57
2948 3307 4.454678 CCTGCTTATCTTAATCAGCACCA 58.545 43.478 0.00 0.00 37.24 4.17
2960 3319 3.721793 GCCTCATGCCTGCTTATCT 57.278 52.632 0.00 0.00 0.00 1.98
2971 3330 1.688772 AAATAGCAGCAGGCCTCATG 58.311 50.000 0.00 5.69 46.50 3.07
2978 3337 7.229306 TGGTTATCTGAATAAAATAGCAGCAGG 59.771 37.037 0.00 0.00 0.00 4.85
2993 3352 5.738619 TGTAGCTTGTCTGGTTATCTGAA 57.261 39.130 0.00 0.00 0.00 3.02
2995 3354 6.166279 TCTTTGTAGCTTGTCTGGTTATCTG 58.834 40.000 0.00 0.00 0.00 2.90
3020 3379 4.043596 AGATTCCTTCTGGCCTACATCTT 58.956 43.478 3.32 0.00 31.79 2.40
3096 3456 0.109597 CCAGTACACCGTACACGTCC 60.110 60.000 7.02 0.00 37.74 4.79
3148 3508 8.584157 CCTGAATATCAAGACAGCTAGAGTAAT 58.416 37.037 0.00 0.00 0.00 1.89
3152 3512 6.647334 TCCTGAATATCAAGACAGCTAGAG 57.353 41.667 0.00 0.00 0.00 2.43
3180 3541 9.988350 GTCAAAACACATACATCTAATAGGTTG 57.012 33.333 0.00 0.00 0.00 3.77
3222 3584 9.056005 GGTTGTGATCTATAGACAATGCAATAA 57.944 33.333 4.10 0.00 32.48 1.40
3236 3598 7.944729 AAGTTAAATGCAGGTTGTGATCTAT 57.055 32.000 0.00 0.00 0.00 1.98
3246 3608 5.356751 TGCATATCGAAAGTTAAATGCAGGT 59.643 36.000 3.83 0.00 38.64 4.00
3247 3609 5.820131 TGCATATCGAAAGTTAAATGCAGG 58.180 37.500 3.83 0.00 38.64 4.85
3248 3610 7.112565 GTGATGCATATCGAAAGTTAAATGCAG 59.887 37.037 12.61 0.00 45.19 4.41
3249 3611 6.912051 GTGATGCATATCGAAAGTTAAATGCA 59.088 34.615 9.89 9.89 45.88 3.96
3250 3612 7.112565 CAGTGATGCATATCGAAAGTTAAATGC 59.887 37.037 0.00 0.00 36.04 3.56
3251 3613 7.112565 GCAGTGATGCATATCGAAAGTTAAATG 59.887 37.037 0.00 0.00 36.04 2.32
3252 3614 7.012704 AGCAGTGATGCATATCGAAAGTTAAAT 59.987 33.333 0.00 0.00 36.04 1.40
3253 3615 6.316140 AGCAGTGATGCATATCGAAAGTTAAA 59.684 34.615 0.00 0.00 36.04 1.52
3254 3616 5.817296 AGCAGTGATGCATATCGAAAGTTAA 59.183 36.000 0.00 0.00 36.04 2.01
3255 3617 5.359756 AGCAGTGATGCATATCGAAAGTTA 58.640 37.500 0.00 0.00 36.04 2.24
3256 3618 4.194640 AGCAGTGATGCATATCGAAAGTT 58.805 39.130 0.00 0.00 36.04 2.66
3257 3619 3.801698 AGCAGTGATGCATATCGAAAGT 58.198 40.909 0.00 0.00 36.04 2.66
3258 3620 5.912360 TTAGCAGTGATGCATATCGAAAG 57.088 39.130 0.00 0.00 36.04 2.62
3259 3621 5.817296 ACTTTAGCAGTGATGCATATCGAAA 59.183 36.000 0.00 0.00 36.04 3.46
3260 3622 5.359756 ACTTTAGCAGTGATGCATATCGAA 58.640 37.500 0.00 0.00 36.04 3.71
3261 3623 4.948847 ACTTTAGCAGTGATGCATATCGA 58.051 39.130 0.00 0.00 36.04 3.59
3273 3635 5.473066 AAATCAATTGGCACTTTAGCAGT 57.527 34.783 5.42 0.00 35.35 4.40
3274 3636 6.624423 AGTAAATCAATTGGCACTTTAGCAG 58.376 36.000 5.42 0.00 35.83 4.24
3275 3637 6.588719 AGTAAATCAATTGGCACTTTAGCA 57.411 33.333 5.42 0.00 35.83 3.49
3276 3638 9.023967 CAATAGTAAATCAATTGGCACTTTAGC 57.976 33.333 5.42 0.00 0.00 3.09
3277 3639 9.023967 GCAATAGTAAATCAATTGGCACTTTAG 57.976 33.333 5.42 0.09 32.44 1.85
3278 3640 8.748412 AGCAATAGTAAATCAATTGGCACTTTA 58.252 29.630 5.42 3.08 32.44 1.85
3279 3641 7.614494 AGCAATAGTAAATCAATTGGCACTTT 58.386 30.769 5.42 3.96 32.44 2.66
3280 3642 7.093814 TGAGCAATAGTAAATCAATTGGCACTT 60.094 33.333 5.42 0.00 32.44 3.16
3281 3643 6.377996 TGAGCAATAGTAAATCAATTGGCACT 59.622 34.615 5.42 6.51 32.44 4.40
3282 3644 6.473455 GTGAGCAATAGTAAATCAATTGGCAC 59.527 38.462 5.42 0.00 32.44 5.01
3283 3645 6.377996 AGTGAGCAATAGTAAATCAATTGGCA 59.622 34.615 5.42 0.00 32.44 4.92
3284 3646 6.694411 CAGTGAGCAATAGTAAATCAATTGGC 59.306 38.462 5.42 0.00 32.44 4.52
3285 3647 7.988737 TCAGTGAGCAATAGTAAATCAATTGG 58.011 34.615 5.42 0.00 32.44 3.16
3286 3648 9.844790 TTTCAGTGAGCAATAGTAAATCAATTG 57.155 29.630 0.00 0.00 34.45 2.32
3289 3651 8.677300 GGATTTCAGTGAGCAATAGTAAATCAA 58.323 33.333 9.45 0.00 35.04 2.57
3290 3652 7.283127 GGGATTTCAGTGAGCAATAGTAAATCA 59.717 37.037 9.45 0.00 35.04 2.57
3291 3653 7.500559 AGGGATTTCAGTGAGCAATAGTAAATC 59.499 37.037 0.00 0.00 33.45 2.17
3292 3654 7.284034 CAGGGATTTCAGTGAGCAATAGTAAAT 59.716 37.037 0.00 0.00 0.00 1.40
3293 3655 6.599244 CAGGGATTTCAGTGAGCAATAGTAAA 59.401 38.462 0.00 0.00 0.00 2.01
3294 3656 6.115446 CAGGGATTTCAGTGAGCAATAGTAA 58.885 40.000 0.00 0.00 0.00 2.24
3295 3657 5.674525 CAGGGATTTCAGTGAGCAATAGTA 58.325 41.667 0.00 0.00 0.00 1.82
3296 3658 4.521146 CAGGGATTTCAGTGAGCAATAGT 58.479 43.478 0.00 0.00 0.00 2.12
3297 3659 3.314635 GCAGGGATTTCAGTGAGCAATAG 59.685 47.826 0.00 0.00 0.00 1.73
3298 3660 3.282021 GCAGGGATTTCAGTGAGCAATA 58.718 45.455 0.00 0.00 0.00 1.90
3299 3661 2.097825 GCAGGGATTTCAGTGAGCAAT 58.902 47.619 0.00 0.00 0.00 3.56
3300 3662 1.538047 GCAGGGATTTCAGTGAGCAA 58.462 50.000 0.00 0.00 0.00 3.91
3301 3663 0.322816 GGCAGGGATTTCAGTGAGCA 60.323 55.000 0.00 0.00 0.00 4.26
3302 3664 1.034292 GGGCAGGGATTTCAGTGAGC 61.034 60.000 0.00 0.00 0.00 4.26
3303 3665 0.329261 TGGGCAGGGATTTCAGTGAG 59.671 55.000 0.00 0.00 0.00 3.51
3304 3666 1.002069 ATGGGCAGGGATTTCAGTGA 58.998 50.000 0.00 0.00 0.00 3.41
3305 3667 1.856629 AATGGGCAGGGATTTCAGTG 58.143 50.000 0.00 0.00 0.00 3.66
3306 3668 2.687914 GCTAATGGGCAGGGATTTCAGT 60.688 50.000 0.00 0.00 0.00 3.41
3307 3669 1.959282 GCTAATGGGCAGGGATTTCAG 59.041 52.381 0.00 0.00 0.00 3.02
3308 3670 1.411501 GGCTAATGGGCAGGGATTTCA 60.412 52.381 0.00 0.00 40.53 2.69
3309 3671 1.332195 GGCTAATGGGCAGGGATTTC 58.668 55.000 0.00 0.00 40.53 2.17
3310 3672 0.105504 GGGCTAATGGGCAGGGATTT 60.106 55.000 0.00 0.00 42.84 2.17
3311 3673 1.001140 AGGGCTAATGGGCAGGGATT 61.001 55.000 0.00 0.00 42.84 3.01
3312 3674 0.103930 TAGGGCTAATGGGCAGGGAT 60.104 55.000 0.00 0.00 42.84 3.85
3313 3675 0.768221 CTAGGGCTAATGGGCAGGGA 60.768 60.000 0.00 0.00 42.84 4.20
3314 3676 1.763770 CTAGGGCTAATGGGCAGGG 59.236 63.158 0.00 0.00 42.84 4.45
3315 3677 0.768221 TCCTAGGGCTAATGGGCAGG 60.768 60.000 9.46 0.00 42.84 4.85
3316 3678 1.072965 CTTCCTAGGGCTAATGGGCAG 59.927 57.143 9.46 0.00 42.84 4.85
3317 3679 1.140312 CTTCCTAGGGCTAATGGGCA 58.860 55.000 9.46 0.00 42.84 5.36
3318 3680 0.402121 CCTTCCTAGGGCTAATGGGC 59.598 60.000 9.46 0.00 37.94 5.36
3319 3681 1.821088 ACCTTCCTAGGGCTAATGGG 58.179 55.000 9.46 3.80 46.58 4.00
3328 3690 7.671819 TCATGTCTATATTCAGACCTTCCTAGG 59.328 40.741 0.82 0.82 43.63 3.02
3332 3694 7.014711 TCTGTCATGTCTATATTCAGACCTTCC 59.985 40.741 3.68 0.00 43.63 3.46
3336 3698 6.155827 GCTCTGTCATGTCTATATTCAGACC 58.844 44.000 3.68 0.00 43.63 3.85
3348 3710 2.935201 GAGAACCATGCTCTGTCATGTC 59.065 50.000 0.59 0.00 41.60 3.06
3349 3711 2.303890 TGAGAACCATGCTCTGTCATGT 59.696 45.455 0.59 0.00 41.60 3.21
3366 3730 5.477637 TGAATGCAATCACCTGAAAATGAGA 59.522 36.000 0.00 0.00 0.00 3.27
3404 3784 7.040478 CCCAGAAATGTTGTCTGAAATCTAACA 60.040 37.037 3.02 0.00 44.44 2.41
3520 3900 4.024977 GCATCAGCAAACCGTTTTCAAAAT 60.025 37.500 0.00 0.00 41.58 1.82
3569 3952 2.146342 CTTGAACTGTAGTGCCACTGG 58.854 52.381 7.83 0.24 0.00 4.00
3582 3965 3.134458 CAGCCGAAGAACTTCTTGAACT 58.866 45.455 8.83 0.70 36.73 3.01
3593 3976 1.336887 CGAAGGAGTTCAGCCGAAGAA 60.337 52.381 0.00 0.00 32.36 2.52
3654 4037 0.757188 CATAGCTCCCCACGGACTCT 60.757 60.000 0.00 0.00 33.32 3.24
3660 4043 0.179073 CCTCAACATAGCTCCCCACG 60.179 60.000 0.00 0.00 0.00 4.94
3699 4082 2.069273 AGTGTGCGACTACATGAAAGC 58.931 47.619 0.00 0.00 30.86 3.51
3704 4087 2.064573 TGTGAGTGTGCGACTACATG 57.935 50.000 0.00 0.00 33.83 3.21
3705 4088 3.319137 AATGTGAGTGTGCGACTACAT 57.681 42.857 0.00 0.00 33.83 2.29
3712 4095 4.211164 TGAACTTCTTAATGTGAGTGTGCG 59.789 41.667 0.00 0.00 0.00 5.34
3715 4098 7.727181 AGTACTGAACTTCTTAATGTGAGTGT 58.273 34.615 0.00 0.00 33.35 3.55
3716 4099 8.594881 AAGTACTGAACTTCTTAATGTGAGTG 57.405 34.615 0.00 0.00 45.64 3.51
3721 4104 8.035984 GGCTCTAAGTACTGAACTTCTTAATGT 58.964 37.037 0.00 0.00 45.64 2.71
3722 4105 8.254508 AGGCTCTAAGTACTGAACTTCTTAATG 58.745 37.037 0.00 0.00 45.64 1.90
3723 4106 8.368962 AGGCTCTAAGTACTGAACTTCTTAAT 57.631 34.615 0.00 0.00 45.64 1.40
3724 4107 7.778185 AGGCTCTAAGTACTGAACTTCTTAA 57.222 36.000 0.00 0.00 45.64 1.85
3725 4108 8.904834 CATAGGCTCTAAGTACTGAACTTCTTA 58.095 37.037 0.00 0.00 45.64 2.10
3746 4129 9.283768 TGCCATACATAAACAGATAAACATAGG 57.716 33.333 0.00 0.00 0.00 2.57
3749 4132 7.779798 ACCTGCCATACATAAACAGATAAACAT 59.220 33.333 0.00 0.00 0.00 2.71
3757 4140 4.943705 AGTGAACCTGCCATACATAAACAG 59.056 41.667 0.00 0.00 0.00 3.16
3759 4142 5.393027 CCAAGTGAACCTGCCATACATAAAC 60.393 44.000 0.00 0.00 0.00 2.01
3761 4144 4.018870 TCCAAGTGAACCTGCCATACATAA 60.019 41.667 0.00 0.00 0.00 1.90
3762 4145 3.521531 TCCAAGTGAACCTGCCATACATA 59.478 43.478 0.00 0.00 0.00 2.29
3763 4146 2.308570 TCCAAGTGAACCTGCCATACAT 59.691 45.455 0.00 0.00 0.00 2.29
3764 4147 1.702401 TCCAAGTGAACCTGCCATACA 59.298 47.619 0.00 0.00 0.00 2.29
3765 4148 2.488153 GTTCCAAGTGAACCTGCCATAC 59.512 50.000 0.00 0.00 46.35 2.39
3766 4149 2.790433 GTTCCAAGTGAACCTGCCATA 58.210 47.619 0.00 0.00 46.35 2.74
3767 4150 1.620822 GTTCCAAGTGAACCTGCCAT 58.379 50.000 0.00 0.00 46.35 4.40
3768 4151 3.109847 GTTCCAAGTGAACCTGCCA 57.890 52.632 0.00 0.00 46.35 4.92
3824 4207 2.618053 CCTGCGATTCCTTTTACGACT 58.382 47.619 0.00 0.00 0.00 4.18
3869 4252 5.915196 GCGAAACAAAAATAGCAGAGAACTT 59.085 36.000 0.00 0.00 0.00 2.66
3962 4345 7.036220 AGTGACATAGTGTGCAATACTACTTC 58.964 38.462 12.72 12.02 43.47 3.01
3969 4352 9.750125 CTTTAGATAGTGACATAGTGTGCAATA 57.250 33.333 0.00 0.00 0.00 1.90
3976 4359 6.161855 TGGGCTTTAGATAGTGACATAGTG 57.838 41.667 0.00 0.00 0.00 2.74
3977 4360 5.221541 GCTGGGCTTTAGATAGTGACATAGT 60.222 44.000 0.00 0.00 0.00 2.12
3978 4361 5.011533 AGCTGGGCTTTAGATAGTGACATAG 59.988 44.000 0.00 0.00 33.89 2.23
3979 4362 4.901849 AGCTGGGCTTTAGATAGTGACATA 59.098 41.667 0.00 0.00 33.89 2.29
3980 4363 3.713764 AGCTGGGCTTTAGATAGTGACAT 59.286 43.478 0.00 0.00 33.89 3.06
3981 4364 3.107601 AGCTGGGCTTTAGATAGTGACA 58.892 45.455 0.00 0.00 33.89 3.58
3982 4365 3.828875 AGCTGGGCTTTAGATAGTGAC 57.171 47.619 0.00 0.00 33.89 3.67
3996 4379 5.702209 AGTTGATTATTTTGCAAAAGCTGGG 59.298 36.000 27.08 0.00 0.00 4.45
4012 4395 4.025360 TGACCCGGTAGCTTAGTTGATTA 58.975 43.478 0.00 0.00 0.00 1.75
4019 4402 1.065928 CGCTGACCCGGTAGCTTAG 59.934 63.158 17.14 2.07 37.78 2.18
4021 4404 3.771160 CCGCTGACCCGGTAGCTT 61.771 66.667 17.14 0.00 43.24 3.74
4028 4411 0.673644 AAAGAATGACCGCTGACCCG 60.674 55.000 0.00 0.00 0.00 5.28
4030 4413 3.689649 ACATAAAAGAATGACCGCTGACC 59.310 43.478 0.00 0.00 0.00 4.02
4031 4414 4.946784 ACATAAAAGAATGACCGCTGAC 57.053 40.909 0.00 0.00 0.00 3.51
4055 4802 3.076621 TGACTGCCTACATTCTTTGCTG 58.923 45.455 0.00 0.00 0.00 4.41
4068 4815 2.211250 ATGCTTCATGTTGACTGCCT 57.789 45.000 0.00 0.00 0.00 4.75
4069 4816 3.308438 AAATGCTTCATGTTGACTGCC 57.692 42.857 0.00 0.00 0.00 4.85
4157 4905 3.264193 TCCAGTACCGTTCACTAGGAGTA 59.736 47.826 0.00 0.00 0.00 2.59
4171 4919 1.047034 ATACCCGTGCCTCCAGTACC 61.047 60.000 0.00 0.00 0.00 3.34
4173 4921 1.105167 CGATACCCGTGCCTCCAGTA 61.105 60.000 0.00 0.00 0.00 2.74
4174 4922 2.423898 CGATACCCGTGCCTCCAGT 61.424 63.158 0.00 0.00 0.00 4.00
4175 4923 2.417516 CGATACCCGTGCCTCCAG 59.582 66.667 0.00 0.00 0.00 3.86
4176 4924 3.845259 GCGATACCCGTGCCTCCA 61.845 66.667 0.00 0.00 41.15 3.86
4181 4929 3.036084 CGATGGCGATACCCGTGC 61.036 66.667 0.00 0.00 40.82 5.34
4186 4934 0.884704 ACATTGGCGATGGCGATACC 60.885 55.000 18.70 0.00 40.21 2.73
4198 4946 0.599558 TCAAGCAGAGCAACATTGGC 59.400 50.000 0.00 0.00 0.00 4.52
4203 4951 2.574450 TCAATGTCAAGCAGAGCAACA 58.426 42.857 0.00 0.00 0.00 3.33
4227 4975 3.457380 AGAGCAGAAGGCCTGAATAATCA 59.543 43.478 5.69 0.00 45.78 2.57
4228 4976 4.064388 GAGAGCAGAAGGCCTGAATAATC 58.936 47.826 5.69 0.00 45.78 1.75
4251 5001 2.094286 CCGGCCATACAAAAATCAAGCA 60.094 45.455 2.24 0.00 0.00 3.91
4253 5003 3.510719 CACCGGCCATACAAAAATCAAG 58.489 45.455 0.00 0.00 0.00 3.02
4254 5004 2.353208 GCACCGGCCATACAAAAATCAA 60.353 45.455 0.00 0.00 0.00 2.57
4262 5012 1.549243 TTCAGAGCACCGGCCATACA 61.549 55.000 0.00 0.00 42.56 2.29
4264 5014 1.220749 GTTCAGAGCACCGGCCATA 59.779 57.895 0.00 0.00 42.56 2.74
4265 5015 2.045926 GTTCAGAGCACCGGCCAT 60.046 61.111 0.00 0.00 42.56 4.40
4300 5050 2.102252 GCTGTAGGAATCTGAGACTGGG 59.898 54.545 0.00 0.00 0.00 4.45
4352 5103 0.820871 ACTTTGGACGCAAAAGCCAA 59.179 45.000 6.62 0.00 38.03 4.52
4367 5118 8.829612 CAACAAATTCTAAGCATTTCCAACTTT 58.170 29.630 0.00 0.00 0.00 2.66
4390 5141 7.625828 ACTATTACCTAATGAAACAGCCAAC 57.374 36.000 0.00 0.00 0.00 3.77
4401 5152 6.685657 GGGAACCGTCTACTATTACCTAATG 58.314 44.000 0.00 0.00 40.86 1.90
4643 5394 4.635765 TGACAGTGATAAATGCTTACCTGC 59.364 41.667 0.00 0.00 0.00 4.85
4654 5405 6.061441 ACAAGTTGGTCATGACAGTGATAAA 58.939 36.000 26.47 6.77 0.00 1.40
4655 5406 5.620206 ACAAGTTGGTCATGACAGTGATAA 58.380 37.500 26.47 8.99 0.00 1.75
4657 5408 4.067896 GACAAGTTGGTCATGACAGTGAT 58.932 43.478 26.47 7.45 37.73 3.06
4668 5437 3.380004 TGTTGGACAATGACAAGTTGGTC 59.620 43.478 7.96 4.38 38.29 4.02
4674 5443 4.493057 CGATCGATGTTGGACAATGACAAG 60.493 45.833 10.26 0.00 0.00 3.16
4681 5450 2.876091 GACTCGATCGATGTTGGACAA 58.124 47.619 19.78 0.00 0.00 3.18
4709 5478 2.126618 TGGTGATCGCGTCGACAC 60.127 61.111 17.16 4.66 39.18 3.67
4751 5527 3.717294 ACCAGGTCGTCCATGGCC 61.717 66.667 6.96 1.83 36.30 5.36
4873 5649 4.697352 ACCACAGCTTAAATGCTTCAGTAG 59.303 41.667 0.00 0.00 41.98 2.57
4928 5725 2.945668 AGCTCAACTCAAAAGAAAGCGT 59.054 40.909 0.00 0.00 33.28 5.07
4943 5740 2.487934 GTTCAGTTCTGCTCAGCTCAA 58.512 47.619 0.00 0.00 0.00 3.02
4969 5766 1.286880 GCCGAGTGCTGCAAACAAT 59.713 52.632 2.77 0.00 36.87 2.71
4972 5769 4.389576 CCGCCGAGTGCTGCAAAC 62.390 66.667 2.77 0.13 38.05 2.93
5321 6120 0.245539 ACGAACCGACCGATTCACAT 59.754 50.000 0.00 0.00 0.00 3.21
5322 6121 0.665068 CACGAACCGACCGATTCACA 60.665 55.000 0.00 0.00 0.00 3.58
5323 6122 1.952266 GCACGAACCGACCGATTCAC 61.952 60.000 0.00 0.00 0.00 3.18
5324 6123 1.735198 GCACGAACCGACCGATTCA 60.735 57.895 0.00 0.00 0.00 2.57
5325 6124 2.450345 GGCACGAACCGACCGATTC 61.450 63.158 0.00 0.00 0.00 2.52
5326 6125 2.433664 GGCACGAACCGACCGATT 60.434 61.111 0.00 0.00 0.00 3.34
5344 6143 2.831685 TCCATATGTACACATCCGGC 57.168 50.000 0.00 0.00 37.76 6.13
5437 6238 2.256158 CCGCTCACACCGTTCGTA 59.744 61.111 0.00 0.00 0.00 3.43
5455 6258 2.186903 CTCCATCCAACCCGACGG 59.813 66.667 6.99 6.99 0.00 4.79
5483 6286 2.092429 TGGGAACACAGAAACTGCTTCT 60.092 45.455 0.00 0.00 39.51 2.85
5490 6309 3.872771 TCTACGTTTGGGAACACAGAAAC 59.127 43.478 0.00 0.00 42.67 2.78
5497 6316 2.211806 CCGTTTCTACGTTTGGGAACA 58.788 47.619 0.00 0.00 46.20 3.18
5589 6409 4.864806 ACATGAATCATACGTGAGACACAC 59.135 41.667 0.00 0.00 45.11 3.82
5591 6411 5.171516 CGTACATGAATCATACGTGAGACAC 59.828 44.000 9.64 0.00 37.87 3.67
5599 6419 7.962918 TGAGACATATCGTACATGAATCATACG 59.037 37.037 11.17 11.17 42.33 3.06
5609 6429 6.796705 TCATACGTGAGACATATCGTACAT 57.203 37.500 0.00 0.00 40.57 2.29
5610 6430 6.796705 ATCATACGTGAGACATATCGTACA 57.203 37.500 0.00 0.00 40.57 2.90
5611 6431 7.295930 TGAATCATACGTGAGACATATCGTAC 58.704 38.462 0.00 0.00 40.57 3.67
5612 6432 7.429636 TGAATCATACGTGAGACATATCGTA 57.570 36.000 0.00 0.00 41.64 3.43
5613 6433 6.313744 TGAATCATACGTGAGACATATCGT 57.686 37.500 0.00 0.00 37.87 3.73
5614 6434 6.803807 ACATGAATCATACGTGAGACATATCG 59.196 38.462 0.00 0.00 37.87 2.92
5615 6435 9.794685 ATACATGAATCATACGTGAGACATATC 57.205 33.333 0.00 0.00 37.87 1.63
5618 6438 6.367149 GCATACATGAATCATACGTGAGACAT 59.633 38.462 0.00 0.00 37.87 3.06
5619 6439 5.691754 GCATACATGAATCATACGTGAGACA 59.308 40.000 0.00 0.00 37.87 3.41
5620 6440 5.119279 GGCATACATGAATCATACGTGAGAC 59.881 44.000 0.00 0.00 37.87 3.36
5621 6441 5.230182 GGCATACATGAATCATACGTGAGA 58.770 41.667 0.00 0.00 37.87 3.27
5622 6442 4.090498 CGGCATACATGAATCATACGTGAG 59.910 45.833 0.00 0.00 37.87 3.51
5623 6443 3.987220 CGGCATACATGAATCATACGTGA 59.013 43.478 0.00 0.00 39.04 4.35
5624 6444 3.740832 ACGGCATACATGAATCATACGTG 59.259 43.478 0.00 0.00 0.00 4.49
5636 6820 2.113860 AACTCAAGCACGGCATACAT 57.886 45.000 0.00 0.00 0.00 2.29
5723 6908 5.646360 ACGTGTGGGACCAATATTTTCTAAG 59.354 40.000 0.00 0.00 0.00 2.18
5727 6912 4.022676 ACAACGTGTGGGACCAATATTTTC 60.023 41.667 0.00 0.00 0.00 2.29
5732 6917 3.008157 ACATACAACGTGTGGGACCAATA 59.992 43.478 0.00 0.00 0.00 1.90
5735 6920 0.759959 ACATACAACGTGTGGGACCA 59.240 50.000 0.00 0.00 0.00 4.02
5747 6932 8.887717 CCATTTTTGTTTTTCTTGGACATACAA 58.112 29.630 0.00 0.00 0.00 2.41
5754 6940 6.156083 AGTCCTCCATTTTTGTTTTTCTTGGA 59.844 34.615 0.00 0.00 0.00 3.53
5756 6942 7.041107 TCAGTCCTCCATTTTTGTTTTTCTTG 58.959 34.615 0.00 0.00 0.00 3.02
5757 6943 7.181569 TCAGTCCTCCATTTTTGTTTTTCTT 57.818 32.000 0.00 0.00 0.00 2.52
5769 6955 0.179100 CGCGTGATCAGTCCTCCATT 60.179 55.000 0.00 0.00 0.00 3.16
5770 6956 1.439228 CGCGTGATCAGTCCTCCAT 59.561 57.895 0.00 0.00 0.00 3.41
5771 6957 2.885113 CGCGTGATCAGTCCTCCA 59.115 61.111 0.00 0.00 0.00 3.86
5772 6958 2.583593 GCGCGTGATCAGTCCTCC 60.584 66.667 8.43 0.00 0.00 4.30
5773 6959 2.951745 CGCGCGTGATCAGTCCTC 60.952 66.667 24.19 0.00 0.00 3.71
5776 6962 3.751401 TAGCCGCGCGTGATCAGTC 62.751 63.158 29.95 8.25 0.00 3.51
5778 6964 2.355126 ATAGCCGCGCGTGATCAG 60.355 61.111 29.95 13.34 0.00 2.90
5791 6982 1.643832 GCAGTTAGCGGCACATAGC 59.356 57.895 1.45 0.00 44.65 2.97
5818 7009 2.658593 CTTCCTACCGCGCGATGG 60.659 66.667 34.63 27.47 0.00 3.51
5820 7011 2.722487 CTCTTCCTACCGCGCGAT 59.278 61.111 34.63 19.98 0.00 4.58
5826 7031 1.030488 TGACGAGCCTCTTCCTACCG 61.030 60.000 0.00 0.00 0.00 4.02
5834 7039 1.102154 CATCAGTCTGACGAGCCTCT 58.898 55.000 4.21 0.00 0.00 3.69
5838 7043 0.805322 CTGGCATCAGTCTGACGAGC 60.805 60.000 4.21 9.68 36.30 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.