Multiple sequence alignment - TraesCS7A01G481200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G481200 chr7A 100.000 3575 0 0 1 3575 673242579 673246153 0.000000e+00 6602.0
1 TraesCS7A01G481200 chr7A 85.868 2420 234 54 1246 3575 673126403 673128804 0.000000e+00 2475.0
2 TraesCS7A01G481200 chr7A 85.857 601 29 24 1903 2466 673133197 673133778 3.980000e-164 588.0
3 TraesCS7A01G481200 chr7A 91.765 85 7 0 3491 3575 673315536 673315620 6.270000e-23 119.0
4 TraesCS7A01G481200 chr7D 96.979 2516 45 5 1061 3575 581452042 581454527 0.000000e+00 4196.0
5 TraesCS7A01G481200 chr7D 85.596 2423 224 50 1247 3575 581289565 581291956 0.000000e+00 2425.0
6 TraesCS7A01G481200 chr7D 94.114 1478 50 11 1139 2586 581384391 581385861 0.000000e+00 2213.0
7 TraesCS7A01G481200 chr7D 82.507 1109 141 27 2179 3257 581431517 581432602 0.000000e+00 924.0
8 TraesCS7A01G481200 chr7D 95.167 538 25 1 3039 3575 581389610 581390147 0.000000e+00 848.0
9 TraesCS7A01G481200 chr7D 92.027 602 44 2 1 598 188544904 188544303 0.000000e+00 843.0
10 TraesCS7A01G481200 chr7D 82.261 964 133 24 2314 3257 581297667 581298612 0.000000e+00 798.0
11 TraesCS7A01G481200 chr7D 85.570 596 51 13 1874 2445 581297090 581297674 3.070000e-165 592.0
12 TraesCS7A01G481200 chr7D 95.211 355 15 1 3093 3447 581386447 581386799 8.670000e-156 560.0
13 TraesCS7A01G481200 chr7D 85.526 304 41 2 599 899 581383642 581383945 7.450000e-82 315.0
14 TraesCS7A01G481200 chr7D 89.200 250 26 1 869 1118 581384159 581384407 9.640000e-81 311.0
15 TraesCS7A01G481200 chr7D 93.600 125 8 0 951 1075 581451628 581451752 1.690000e-43 187.0
16 TraesCS7A01G481200 chr7D 94.495 109 6 0 610 718 581451521 581451629 6.140000e-38 169.0
17 TraesCS7A01G481200 chr7D 95.294 85 4 0 3491 3575 581690342 581690426 6.230000e-28 135.0
18 TraesCS7A01G481200 chr7B 84.867 2445 261 61 1217 3575 648916485 648918906 0.000000e+00 2364.0
19 TraesCS7A01G481200 chr7B 94.170 1458 50 12 1158 2586 649013322 649014773 0.000000e+00 2189.0
20 TraesCS7A01G481200 chr7B 94.164 1131 54 3 2453 3575 649014765 649015891 0.000000e+00 1712.0
21 TraesCS7A01G481200 chr7B 93.822 1133 56 6 2453 3575 649212603 649213731 0.000000e+00 1692.0
22 TraesCS7A01G481200 chr7B 92.416 923 55 6 2454 3367 649098348 649099264 0.000000e+00 1303.0
23 TraesCS7A01G481200 chr7B 86.387 1146 111 23 1408 2523 648783030 648784160 0.000000e+00 1210.0
24 TraesCS7A01G481200 chr7B 76.596 2115 319 97 1300 3292 649247349 649249409 0.000000e+00 1002.0
25 TraesCS7A01G481200 chr7B 95.745 611 26 0 1279 1889 649211320 649211930 0.000000e+00 985.0
26 TraesCS7A01G481200 chr7B 90.579 743 39 11 1862 2586 649097626 649098355 0.000000e+00 955.0
27 TraesCS7A01G481200 chr7B 94.042 621 30 2 1966 2586 649211998 649212611 0.000000e+00 935.0
28 TraesCS7A01G481200 chr7B 81.510 384 45 11 599 959 649012718 649013098 3.490000e-75 292.0
29 TraesCS7A01G481200 chr7B 95.732 164 7 0 3412 3575 649099260 649099423 7.610000e-67 265.0
30 TraesCS7A01G481200 chr7B 90.055 181 18 0 869 1049 649210925 649211105 5.970000e-58 235.0
31 TraesCS7A01G481200 chr7B 97.647 85 2 0 3491 3575 649319789 649319873 2.880000e-31 147.0
32 TraesCS7A01G481200 chr7B 91.489 47 4 0 1920 1966 649211934 649211980 8.280000e-07 65.8
33 TraesCS7A01G481200 chr4D 92.270 608 45 2 1 607 486777079 486776473 0.000000e+00 861.0
34 TraesCS7A01G481200 chr1D 92.537 603 42 3 1 601 272538914 272538313 0.000000e+00 861.0
35 TraesCS7A01G481200 chr6D 91.736 605 49 1 1 604 296684779 296685383 0.000000e+00 839.0
36 TraesCS7A01G481200 chr6D 91.833 600 46 3 1 598 460272962 460273560 0.000000e+00 833.0
37 TraesCS7A01G481200 chr6D 91.694 602 46 2 1 598 303614630 303614029 0.000000e+00 832.0
38 TraesCS7A01G481200 chr6D 91.528 602 47 2 1 598 131933996 131933395 0.000000e+00 826.0
39 TraesCS7A01G481200 chr2D 91.874 603 42 5 1 598 314366807 314367407 0.000000e+00 835.0
40 TraesCS7A01G481200 chr5D 91.694 602 46 2 1 598 482814457 482815058 0.000000e+00 832.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G481200 chr7A 673242579 673246153 3574 False 6602.000000 6602 100.000000 1 3575 1 chr7A.!!$F3 3574
1 TraesCS7A01G481200 chr7A 673126403 673128804 2401 False 2475.000000 2475 85.868000 1246 3575 1 chr7A.!!$F1 2329
2 TraesCS7A01G481200 chr7A 673133197 673133778 581 False 588.000000 588 85.857000 1903 2466 1 chr7A.!!$F2 563
3 TraesCS7A01G481200 chr7D 581289565 581291956 2391 False 2425.000000 2425 85.596000 1247 3575 1 chr7D.!!$F1 2328
4 TraesCS7A01G481200 chr7D 581451521 581454527 3006 False 1517.333333 4196 95.024667 610 3575 3 chr7D.!!$F6 2965
5 TraesCS7A01G481200 chr7D 581431517 581432602 1085 False 924.000000 924 82.507000 2179 3257 1 chr7D.!!$F2 1078
6 TraesCS7A01G481200 chr7D 581383642 581390147 6505 False 849.400000 2213 91.843600 599 3575 5 chr7D.!!$F5 2976
7 TraesCS7A01G481200 chr7D 188544303 188544904 601 True 843.000000 843 92.027000 1 598 1 chr7D.!!$R1 597
8 TraesCS7A01G481200 chr7D 581297090 581298612 1522 False 695.000000 798 83.915500 1874 3257 2 chr7D.!!$F4 1383
9 TraesCS7A01G481200 chr7B 648916485 648918906 2421 False 2364.000000 2364 84.867000 1217 3575 1 chr7B.!!$F2 2358
10 TraesCS7A01G481200 chr7B 649012718 649015891 3173 False 1397.666667 2189 89.948000 599 3575 3 chr7B.!!$F5 2976
11 TraesCS7A01G481200 chr7B 648783030 648784160 1130 False 1210.000000 1210 86.387000 1408 2523 1 chr7B.!!$F1 1115
12 TraesCS7A01G481200 chr7B 649247349 649249409 2060 False 1002.000000 1002 76.596000 1300 3292 1 chr7B.!!$F3 1992
13 TraesCS7A01G481200 chr7B 649097626 649099423 1797 False 841.000000 1303 92.909000 1862 3575 3 chr7B.!!$F6 1713
14 TraesCS7A01G481200 chr7B 649210925 649213731 2806 False 782.560000 1692 93.030600 869 3575 5 chr7B.!!$F7 2706
15 TraesCS7A01G481200 chr4D 486776473 486777079 606 True 861.000000 861 92.270000 1 607 1 chr4D.!!$R1 606
16 TraesCS7A01G481200 chr1D 272538313 272538914 601 True 861.000000 861 92.537000 1 601 1 chr1D.!!$R1 600
17 TraesCS7A01G481200 chr6D 296684779 296685383 604 False 839.000000 839 91.736000 1 604 1 chr6D.!!$F1 603
18 TraesCS7A01G481200 chr6D 460272962 460273560 598 False 833.000000 833 91.833000 1 598 1 chr6D.!!$F2 597
19 TraesCS7A01G481200 chr6D 303614029 303614630 601 True 832.000000 832 91.694000 1 598 1 chr6D.!!$R2 597
20 TraesCS7A01G481200 chr6D 131933395 131933996 601 True 826.000000 826 91.528000 1 598 1 chr6D.!!$R1 597
21 TraesCS7A01G481200 chr2D 314366807 314367407 600 False 835.000000 835 91.874000 1 598 1 chr2D.!!$F1 597
22 TraesCS7A01G481200 chr5D 482814457 482815058 601 False 832.000000 832 91.694000 1 598 1 chr5D.!!$F1 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
781 786 0.034896 TCTTCTTCCTTGGGACGCAC 59.965 55.0 0.00 0.0 0.00 5.34 F
815 820 0.251077 AAACTCCAGCTGGCCAGAAG 60.251 55.0 37.21 25.8 34.44 2.85 F
972 1241 0.388134 TGCTCTAACGTTGACCGCTC 60.388 55.0 11.99 0.0 41.42 5.03 F
2346 3116 0.883833 ACTTCGCATTTGCTTGGAGG 59.116 50.0 0.51 0.0 39.32 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2346 3116 0.032952 TATTCTATGTGTCGCCCGCC 59.967 55.000 0.0 0.0 0.00 6.13 R
2347 3117 1.137513 GTATTCTATGTGTCGCCCGC 58.862 55.000 0.0 0.0 0.00 6.13 R
2348 3118 1.340248 AGGTATTCTATGTGTCGCCCG 59.660 52.381 0.0 0.0 0.00 6.13 R
3226 7593 3.119245 TCTGCTCGAAAAACTAGCCGTAT 60.119 43.478 0.0 0.0 36.63 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 2.451490 TGTTGTTGCTTCCAGTCCAAA 58.549 42.857 0.00 0.00 0.00 3.28
74 75 6.418101 TCCAGTCCAAAGGATTCTATGAAAG 58.582 40.000 0.00 0.00 32.73 2.62
90 91 1.357761 GAAAGGAGGGGGTTGGATTCA 59.642 52.381 0.00 0.00 0.00 2.57
101 102 0.916845 TTGGATTCATCCCCCGGTGA 60.917 55.000 0.00 0.00 46.59 4.02
109 110 1.003812 CATCCCCCGGTGAGTTTTGTA 59.996 52.381 0.00 0.00 0.00 2.41
159 160 8.044309 TGATCATGATTTTCTTAAAGGTACGGA 58.956 33.333 10.14 0.00 0.00 4.69
206 208 2.621147 GGGAAGTTTATTGCGGGGGTAA 60.621 50.000 0.00 0.00 0.00 2.85
217 219 3.709587 TGCGGGGGTAATTGGAAAATTA 58.290 40.909 0.00 0.00 0.00 1.40
225 227 8.271458 GGGGGTAATTGGAAAATTAATCATTGT 58.729 33.333 0.00 0.00 0.00 2.71
273 275 2.194271 GCTATCAGGTTCGGTCTTTCG 58.806 52.381 0.00 0.00 0.00 3.46
288 290 1.298157 TTTCGCTAGCGCAACATGCT 61.298 50.000 31.82 0.00 42.25 3.79
290 292 2.455291 CGCTAGCGCAACATGCTGA 61.455 57.895 26.07 0.00 43.85 4.26
319 321 7.113965 GCAATCGCCTTGTTATTAATTCTGATG 59.886 37.037 0.00 0.00 37.18 3.07
350 352 8.836413 GGAGGTTATTGAAACGATGAATAATGA 58.164 33.333 0.00 0.00 0.00 2.57
356 358 4.569162 TGAAACGATGAATAATGACGGACC 59.431 41.667 0.00 0.00 0.00 4.46
462 464 2.300956 TGGAAGCCAATAAGGTTGCA 57.699 45.000 0.00 0.00 40.61 4.08
497 499 7.048512 GCTAGGTTGGCTAGATTTTCTTCTAA 58.951 38.462 0.00 0.00 0.00 2.10
551 553 3.547054 TGTACCTTTCCTCACAAACGT 57.453 42.857 0.00 0.00 0.00 3.99
725 727 0.460311 AGAGCAGATCCCGTAAACCG 59.540 55.000 0.00 0.00 0.00 4.44
759 764 5.324832 AATTCCTCCTTTTTCTCCTCACA 57.675 39.130 0.00 0.00 0.00 3.58
781 786 0.034896 TCTTCTTCCTTGGGACGCAC 59.965 55.000 0.00 0.00 0.00 5.34
791 796 3.490759 GGACGCACGCATGGTCAG 61.491 66.667 0.00 0.00 31.32 3.51
806 811 1.346068 GGTCAGACTCAAACTCCAGCT 59.654 52.381 0.00 0.00 0.00 4.24
815 820 0.251077 AAACTCCAGCTGGCCAGAAG 60.251 55.000 37.21 25.80 34.44 2.85
849 854 2.112297 GTTGCCTGGTTCGGTCCA 59.888 61.111 0.00 0.20 36.00 4.02
850 855 1.303317 GTTGCCTGGTTCGGTCCAT 60.303 57.895 0.00 0.00 36.84 3.41
922 1191 2.835431 GAGCTCCTCCGCCTGCTA 60.835 66.667 0.87 0.00 35.76 3.49
926 1195 2.364317 TCCTCCGCCTGCTAGCTT 60.364 61.111 17.23 0.00 0.00 3.74
931 1200 2.959071 CGCCTGCTAGCTTCTCGC 60.959 66.667 17.23 8.87 39.57 5.03
972 1241 0.388134 TGCTCTAACGTTGACCGCTC 60.388 55.000 11.99 0.00 41.42 5.03
978 1247 4.445453 TCTAACGTTGACCGCTCTATAGA 58.555 43.478 11.99 1.69 41.42 1.98
986 1255 2.420722 GACCGCTCTATAGATTCCCTCG 59.579 54.545 2.11 1.21 0.00 4.63
1062 1679 4.215399 TCTGTAAAAACAAAGGATCTGCCG 59.785 41.667 0.00 0.00 43.43 5.69
1105 1722 5.276631 CGCGTTTTCTGCAAATTTAAAGGTT 60.277 36.000 0.00 0.00 0.00 3.50
1106 1723 6.482835 GCGTTTTCTGCAAATTTAAAGGTTT 58.517 32.000 0.00 0.00 0.00 3.27
1107 1724 6.410625 GCGTTTTCTGCAAATTTAAAGGTTTG 59.589 34.615 9.09 9.09 38.13 2.93
1108 1725 7.675170 GCGTTTTCTGCAAATTTAAAGGTTTGA 60.675 33.333 15.30 3.70 37.48 2.69
1109 1726 7.634432 CGTTTTCTGCAAATTTAAAGGTTTGAC 59.366 33.333 15.30 8.93 37.48 3.18
1110 1727 7.546778 TTTCTGCAAATTTAAAGGTTTGACC 57.453 32.000 15.30 3.08 37.48 4.02
1111 1728 5.285651 TCTGCAAATTTAAAGGTTTGACCG 58.714 37.500 15.30 6.29 44.90 4.79
1112 1729 4.372656 TGCAAATTTAAAGGTTTGACCGG 58.627 39.130 15.30 0.00 44.90 5.28
1113 1730 3.743911 GCAAATTTAAAGGTTTGACCGGG 59.256 43.478 15.30 0.00 44.90 5.73
1114 1731 4.501743 GCAAATTTAAAGGTTTGACCGGGA 60.502 41.667 15.30 0.00 44.90 5.14
1115 1732 5.789521 CAAATTTAAAGGTTTGACCGGGAT 58.210 37.500 6.32 0.00 44.90 3.85
1116 1733 6.572703 GCAAATTTAAAGGTTTGACCGGGATA 60.573 38.462 15.30 0.00 44.90 2.59
1117 1734 7.552459 CAAATTTAAAGGTTTGACCGGGATAT 58.448 34.615 6.32 0.00 44.90 1.63
1118 1735 7.727578 AATTTAAAGGTTTGACCGGGATATT 57.272 32.000 6.32 0.00 44.90 1.28
1119 1736 7.727578 ATTTAAAGGTTTGACCGGGATATTT 57.272 32.000 6.32 0.00 44.90 1.40
1120 1737 7.541916 TTTAAAGGTTTGACCGGGATATTTT 57.458 32.000 6.32 0.17 44.90 1.82
1121 1738 7.541916 TTAAAGGTTTGACCGGGATATTTTT 57.458 32.000 6.32 0.84 44.90 1.94
1187 1838 3.071479 CCCAGTGCACTACAAACGTATT 58.929 45.455 21.20 0.00 0.00 1.89
1257 1929 2.593468 ATTCGCCATCACTCACCCCG 62.593 60.000 0.00 0.00 0.00 5.73
1259 1931 2.125106 GCCATCACTCACCCCGTC 60.125 66.667 0.00 0.00 0.00 4.79
1355 2049 2.442272 CCCATCGGAGGACGGACT 60.442 66.667 0.00 0.00 44.45 3.85
1636 2331 2.285743 AAGCTCCCCCAGACCCTC 60.286 66.667 0.00 0.00 0.00 4.30
2298 3068 5.168569 TGTTCTTAAAGACTATGACCGCAG 58.831 41.667 0.00 0.00 0.00 5.18
2345 3115 2.712057 AACTTCGCATTTGCTTGGAG 57.288 45.000 0.51 0.00 39.32 3.86
2346 3116 0.883833 ACTTCGCATTTGCTTGGAGG 59.116 50.000 0.51 0.00 39.32 4.30
2347 3117 0.171903 CTTCGCATTTGCTTGGAGGG 59.828 55.000 0.51 0.00 39.32 4.30
2348 3118 1.876497 TTCGCATTTGCTTGGAGGGC 61.876 55.000 0.51 0.00 39.32 5.19
2691 3826 1.679944 GGGCACTGCAGCTGATTTCTA 60.680 52.381 20.43 0.00 34.17 2.10
3010 4174 6.402875 GGTTTTGTTCGCATAGGTAGGTTTAG 60.403 42.308 0.00 0.00 0.00 1.85
3226 7593 5.680594 TTTCTTTAGCCGGTCAACCTATA 57.319 39.130 1.90 0.00 0.00 1.31
3460 7833 0.108329 ACCTTGCCCACTTATCGACG 60.108 55.000 0.00 0.00 0.00 5.12
3528 7915 7.648142 TCGAAAGCTAATTTCAGACATTGTTT 58.352 30.769 0.00 0.00 46.50 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 6.266131 AGAGCTTGTATCCCCATTGAAATA 57.734 37.500 0.00 0.00 0.00 1.40
60 61 3.312459 ACCCCCTCCTTTCATAGAATCCT 60.312 47.826 0.00 0.00 0.00 3.24
74 75 0.186143 GGATGAATCCAACCCCCTCC 59.814 60.000 4.38 0.00 46.38 4.30
90 91 1.364269 TACAAAACTCACCGGGGGAT 58.636 50.000 2.42 0.00 0.00 3.85
122 123 9.720769 AAGAAAATCATGATCAAAAGAAGCATT 57.279 25.926 9.06 0.00 0.00 3.56
143 144 3.622953 GCCCCATCCGTACCTTTAAGAAA 60.623 47.826 0.00 0.00 0.00 2.52
159 160 1.229951 TTCCTCAGGACAGCCCCAT 60.230 57.895 0.00 0.00 34.66 4.00
206 208 9.304731 CATCGACACAATGATTAATTTTCCAAT 57.695 29.630 0.00 0.00 0.00 3.16
217 219 5.178061 TGTTAGAGCATCGACACAATGATT 58.822 37.500 0.00 0.00 42.67 2.57
256 258 0.608640 AGCGAAAGACCGAACCTGAT 59.391 50.000 0.00 0.00 0.00 2.90
261 263 1.989163 CGCTAGCGAAAGACCGAAC 59.011 57.895 32.98 0.00 42.83 3.95
288 290 4.717233 AATAACAAGGCGATTGCAATCA 57.283 36.364 32.72 15.51 43.15 2.57
290 292 7.436080 CAGAATTAATAACAAGGCGATTGCAAT 59.564 33.333 12.83 12.83 43.15 3.56
319 321 7.083875 TCATCGTTTCAATAACCTCCAAATC 57.916 36.000 0.00 0.00 0.00 2.17
350 352 3.374402 CTCCTGCTGACGGTCCGT 61.374 66.667 18.94 18.94 45.10 4.69
370 372 2.367030 TCATCAAAAATTGCCGCCAG 57.633 45.000 0.00 0.00 0.00 4.85
371 373 3.001414 CAATCATCAAAAATTGCCGCCA 58.999 40.909 0.00 0.00 0.00 5.69
443 445 1.892474 GTGCAACCTTATTGGCTTCCA 59.108 47.619 0.00 0.00 40.22 3.53
462 464 0.320771 CCAACCTAGCAAGCTCGTGT 60.321 55.000 0.00 0.00 0.00 4.49
497 499 2.827921 GGCTCCTCAAACCAATCAACAT 59.172 45.455 0.00 0.00 0.00 2.71
687 689 2.093711 TCTGCTTAGTGCCTCGCAATAA 60.094 45.455 6.39 6.39 44.72 1.40
737 739 5.073428 GTGTGAGGAGAAAAAGGAGGAATT 58.927 41.667 0.00 0.00 0.00 2.17
738 740 4.352298 AGTGTGAGGAGAAAAAGGAGGAAT 59.648 41.667 0.00 0.00 0.00 3.01
759 764 1.270893 GCGTCCCAAGGAAGAAGAAGT 60.271 52.381 0.43 0.00 33.09 3.01
781 786 1.728971 GAGTTTGAGTCTGACCATGCG 59.271 52.381 3.76 0.00 0.00 4.73
791 796 0.957888 GGCCAGCTGGAGTTTGAGTC 60.958 60.000 37.21 14.64 37.39 3.36
833 838 1.002624 GATGGACCGAACCAGGCAA 60.003 57.895 6.67 0.00 43.49 4.52
840 845 3.195698 GCCAGCGATGGACCGAAC 61.196 66.667 26.87 0.00 0.00 3.95
872 925 4.899239 GAGCATCCCCGGAGCACG 62.899 72.222 0.73 0.00 43.80 5.34
914 1183 2.959071 GCGAGAAGCTAGCAGGCG 60.959 66.667 18.83 15.20 44.04 5.52
949 1218 0.606604 GGTCAACGTTAGAGCAGGGA 59.393 55.000 18.55 1.83 33.87 4.20
972 1241 4.998672 AGTCGTTCTCGAGGGAATCTATAG 59.001 45.833 13.56 0.00 46.96 1.31
986 1255 3.009301 TGGAGTTTTCGAGTCGTTCTC 57.991 47.619 13.12 14.31 39.62 2.87
1062 1679 2.987821 GCGCCGAATAGATCCTCTAAAC 59.012 50.000 0.00 0.00 31.96 2.01
1081 1698 4.208253 ACCTTTAAATTTGCAGAAAACGCG 59.792 37.500 3.53 3.53 0.00 6.01
1126 1743 5.010213 CCCGGTCAAACCTAATTCTCAAAAA 59.990 40.000 0.00 0.00 35.66 1.94
1127 1744 4.521256 CCCGGTCAAACCTAATTCTCAAAA 59.479 41.667 0.00 0.00 35.66 2.44
1128 1745 4.076394 CCCGGTCAAACCTAATTCTCAAA 58.924 43.478 0.00 0.00 35.66 2.69
1129 1746 3.328343 TCCCGGTCAAACCTAATTCTCAA 59.672 43.478 0.00 0.00 35.66 3.02
1130 1747 2.907696 TCCCGGTCAAACCTAATTCTCA 59.092 45.455 0.00 0.00 35.66 3.27
1131 1748 3.622166 TCCCGGTCAAACCTAATTCTC 57.378 47.619 0.00 0.00 35.66 2.87
1132 1749 5.368523 TCATATCCCGGTCAAACCTAATTCT 59.631 40.000 0.00 0.00 35.66 2.40
1133 1750 5.617252 TCATATCCCGGTCAAACCTAATTC 58.383 41.667 0.00 0.00 35.66 2.17
1134 1751 5.640158 TCATATCCCGGTCAAACCTAATT 57.360 39.130 0.00 0.00 35.66 1.40
1135 1752 5.560724 CATCATATCCCGGTCAAACCTAAT 58.439 41.667 0.00 0.00 35.66 1.73
1136 1753 4.745478 GCATCATATCCCGGTCAAACCTAA 60.745 45.833 0.00 0.00 35.66 2.69
1137 1754 3.244422 GCATCATATCCCGGTCAAACCTA 60.244 47.826 0.00 0.00 35.66 3.08
1138 1755 2.487265 GCATCATATCCCGGTCAAACCT 60.487 50.000 0.00 0.00 35.66 3.50
1139 1756 1.880027 GCATCATATCCCGGTCAAACC 59.120 52.381 0.00 0.00 34.05 3.27
1140 1757 2.808543 GAGCATCATATCCCGGTCAAAC 59.191 50.000 0.00 0.00 33.17 2.93
1141 1758 2.705658 AGAGCATCATATCCCGGTCAAA 59.294 45.455 0.00 0.00 37.82 2.69
1355 2049 4.457466 TGCATACTCTACGTACCTGATGA 58.543 43.478 0.00 0.00 0.00 2.92
1636 2331 2.584608 CCCTGGTAGAAGCCGGTG 59.415 66.667 1.90 0.00 33.07 4.94
1751 2458 1.743772 GCCGTTACAGCAGTCCATGAT 60.744 52.381 0.00 0.00 0.00 2.45
2298 3068 4.624882 CGCTATGCTTCAGTATCCATTCTC 59.375 45.833 0.00 0.00 0.00 2.87
2345 3115 2.660258 ATTCTATGTGTCGCCCGCCC 62.660 60.000 0.00 0.00 0.00 6.13
2346 3116 0.032952 TATTCTATGTGTCGCCCGCC 59.967 55.000 0.00 0.00 0.00 6.13
2347 3117 1.137513 GTATTCTATGTGTCGCCCGC 58.862 55.000 0.00 0.00 0.00 6.13
2348 3118 1.340248 AGGTATTCTATGTGTCGCCCG 59.660 52.381 0.00 0.00 0.00 6.13
2691 3826 5.923733 ACTTTGAATCACTAGTCCGAGAT 57.076 39.130 0.00 0.00 0.00 2.75
2864 4008 4.284829 TCATTGTGGCTGTGATGTTCTA 57.715 40.909 0.00 0.00 0.00 2.10
3010 4174 5.445540 CCGGTGTCGCTTATTTTAAACTCTC 60.446 44.000 0.00 0.00 34.56 3.20
3226 7593 3.119245 TCTGCTCGAAAAACTAGCCGTAT 60.119 43.478 0.00 0.00 36.63 3.06
3449 7822 5.632347 AGAACCAAGTTAACGTCGATAAGTG 59.368 40.000 0.00 0.00 0.00 3.16
3460 7833 8.617290 TCCTCATTTTCTAGAACCAAGTTAAC 57.383 34.615 4.18 0.00 0.00 2.01
3528 7915 7.222611 GCTTTGATTTGCTCTAACTTTCAACAA 59.777 33.333 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.