Multiple sequence alignment - TraesCS7A01G480000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G480000 chr7A 100.000 2345 0 0 1 2345 672049506 672047162 0.000000e+00 4331.0
1 TraesCS7A01G480000 chr7A 87.596 1298 106 30 640 1897 107955981 107957263 0.000000e+00 1454.0
2 TraesCS7A01G480000 chr7A 85.714 1302 112 33 640 1897 108004943 108006214 0.000000e+00 1306.0
3 TraesCS7A01G480000 chr7A 97.793 589 13 0 1 589 672056337 672055749 0.000000e+00 1016.0
4 TraesCS7A01G480000 chr7A 90.909 242 21 1 640 881 374233589 374233349 8.080000e-85 324.0
5 TraesCS7A01G480000 chr7A 86.111 108 11 3 903 1006 106325196 106325089 1.900000e-21 113.0
6 TraesCS7A01G480000 chr7A 95.000 40 2 0 588 627 311636043 311636004 1.950000e-06 63.9
7 TraesCS7A01G480000 chr3A 88.099 1378 105 26 649 1991 95577856 95579209 0.000000e+00 1581.0
8 TraesCS7A01G480000 chr3A 97.793 589 12 1 1 589 106272652 106273239 0.000000e+00 1014.0
9 TraesCS7A01G480000 chr3A 87.164 818 76 26 1188 1991 95567627 95568429 0.000000e+00 902.0
10 TraesCS7A01G480000 chr3A 90.227 573 39 13 1423 1991 422489350 422488791 0.000000e+00 732.0
11 TraesCS7A01G480000 chr3A 88.073 545 55 9 1450 1989 460354503 460355042 2.540000e-179 638.0
12 TraesCS7A01G480000 chr3A 89.792 480 25 2 640 1096 95567144 95567622 5.580000e-166 593.0
13 TraesCS7A01G480000 chr3A 97.861 187 4 0 1991 2177 495720549 495720363 8.080000e-85 324.0
14 TraesCS7A01G480000 chr3A 93.151 146 10 0 2198 2343 165632170 165632315 5.080000e-52 215.0
15 TraesCS7A01G480000 chr3A 92.466 146 11 0 2200 2345 165606618 165606763 2.360000e-50 209.0
16 TraesCS7A01G480000 chr3A 84.138 145 15 6 1260 1401 290810749 290810610 1.460000e-27 134.0
17 TraesCS7A01G480000 chr3A 87.288 118 9 5 894 1006 151801204 151801320 1.890000e-26 130.0
18 TraesCS7A01G480000 chr3A 86.364 110 12 2 899 1006 557429743 557429851 1.470000e-22 117.0
19 TraesCS7A01G480000 chr3A 95.238 63 3 0 588 650 240076233 240076171 1.480000e-17 100.0
20 TraesCS7A01G480000 chr3A 91.071 56 3 2 1260 1314 239007092 239007146 8.990000e-10 75.0
21 TraesCS7A01G480000 chr5A 88.962 906 77 20 1003 1897 382435065 382435958 0.000000e+00 1098.0
22 TraesCS7A01G480000 chr5A 97.956 587 11 1 3 589 640140032 640140617 0.000000e+00 1016.0
23 TraesCS7A01G480000 chr5A 97.800 591 10 2 1 591 700215790 700215203 0.000000e+00 1016.0
24 TraesCS7A01G480000 chr5A 87.241 917 74 25 987 1893 382442894 382443777 0.000000e+00 1005.0
25 TraesCS7A01G480000 chr5A 86.589 604 63 16 1400 1991 136737829 136737232 0.000000e+00 651.0
26 TraesCS7A01G480000 chr5A 85.314 606 70 16 1398 1991 136734037 136733439 1.990000e-170 608.0
27 TraesCS7A01G480000 chr5A 83.945 654 86 17 1344 1990 395507545 395508186 1.990000e-170 608.0
28 TraesCS7A01G480000 chr5A 94.000 150 7 1 2198 2345 571159297 571159148 2.340000e-55 226.0
29 TraesCS7A01G480000 chr5A 89.109 101 10 1 1095 1194 263325998 263325898 8.800000e-25 124.0
30 TraesCS7A01G480000 chr6A 97.793 589 12 1 1 589 33806427 33807014 0.000000e+00 1014.0
31 TraesCS7A01G480000 chr6A 97.793 589 12 1 1 589 482054778 482055365 0.000000e+00 1014.0
32 TraesCS7A01G480000 chr6A 95.041 242 11 1 640 881 396908263 396908023 1.700000e-101 379.0
33 TraesCS7A01G480000 chr2A 97.793 589 12 1 1 589 671353311 671352724 0.000000e+00 1014.0
34 TraesCS7A01G480000 chr2A 97.789 588 12 1 2 589 501809764 501810350 0.000000e+00 1013.0
35 TraesCS7A01G480000 chr2A 97.470 593 14 1 1 593 566481034 566480443 0.000000e+00 1011.0
36 TraesCS7A01G480000 chr2A 83.715 393 28 5 640 1006 715683149 715682767 2.890000e-89 339.0
37 TraesCS7A01G480000 chr2A 88.327 257 25 5 1040 1294 271236297 271236044 1.050000e-78 303.0
38 TraesCS7A01G480000 chr2A 95.270 148 7 0 2198 2345 695768308 695768161 3.900000e-58 235.0
39 TraesCS7A01G480000 chr2A 95.270 148 7 0 2198 2345 695945297 695945150 3.900000e-58 235.0
40 TraesCS7A01G480000 chr2A 91.566 166 13 1 1063 1227 223269891 223269726 6.520000e-56 228.0
41 TraesCS7A01G480000 chr2A 92.593 135 7 1 875 1006 715661855 715661721 8.550000e-45 191.0
42 TraesCS7A01G480000 chr2A 94.000 100 5 1 836 934 676551873 676551774 1.450000e-32 150.0
43 TraesCS7A01G480000 chr2A 91.667 48 4 0 1201 1248 324263902 324263855 1.500000e-07 67.6
44 TraesCS7A01G480000 chr4A 86.736 573 63 12 1423 1990 126665974 126666538 1.980000e-175 625.0
45 TraesCS7A01G480000 chr4A 86.736 573 63 13 1423 1990 126972699 126973263 1.980000e-175 625.0
46 TraesCS7A01G480000 chr4A 85.751 393 29 4 640 1006 318847785 318847394 7.860000e-105 390.0
47 TraesCS7A01G480000 chr4A 94.595 148 8 0 2198 2345 263920925 263921072 1.810000e-56 230.0
48 TraesCS7A01G480000 chr6B 85.289 605 69 18 1399 1991 128179898 128179302 7.170000e-170 606.0
49 TraesCS7A01G480000 chr5B 84.779 611 74 17 1389 1990 139712180 139711580 1.550000e-166 595.0
50 TraesCS7A01G480000 chr6D 94.762 210 11 0 1991 2200 336267949 336267740 6.250000e-86 327.0
51 TraesCS7A01G480000 chr6D 94.286 210 12 0 1991 2200 359488599 359488808 2.910000e-84 322.0
52 TraesCS7A01G480000 chr1A 90.496 242 22 1 640 881 329767955 329768195 3.760000e-83 318.0
53 TraesCS7A01G480000 chr1A 92.568 148 10 1 2198 2345 393145022 393145168 6.570000e-51 211.0
54 TraesCS7A01G480000 chr1A 92.667 150 6 2 2198 2345 393378381 393378527 6.570000e-51 211.0
55 TraesCS7A01G480000 chr1A 91.892 148 10 1 2198 2345 392956899 392956754 3.050000e-49 206.0
56 TraesCS7A01G480000 chr4D 93.810 210 13 0 1991 2200 56273863 56274072 1.350000e-82 316.0
57 TraesCS7A01G480000 chr4D 93.810 210 13 0 1991 2200 398379510 398379301 1.350000e-82 316.0
58 TraesCS7A01G480000 chr4D 91.905 210 17 0 1991 2200 153956155 153956364 6.340000e-76 294.0
59 TraesCS7A01G480000 chr4D 91.905 210 17 0 1991 2200 466246696 466246487 6.340000e-76 294.0
60 TraesCS7A01G480000 chr2D 93.810 210 13 0 1991 2200 267430230 267430021 1.350000e-82 316.0
61 TraesCS7A01G480000 chr3D 92.788 208 15 0 1991 2198 312081438 312081645 3.790000e-78 302.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G480000 chr7A 672047162 672049506 2344 True 4331.0 4331 100.0000 1 2345 1 chr7A.!!$R4 2344
1 TraesCS7A01G480000 chr7A 107955981 107957263 1282 False 1454.0 1454 87.5960 640 1897 1 chr7A.!!$F1 1257
2 TraesCS7A01G480000 chr7A 108004943 108006214 1271 False 1306.0 1306 85.7140 640 1897 1 chr7A.!!$F2 1257
3 TraesCS7A01G480000 chr7A 672055749 672056337 588 True 1016.0 1016 97.7930 1 589 1 chr7A.!!$R5 588
4 TraesCS7A01G480000 chr3A 95577856 95579209 1353 False 1581.0 1581 88.0990 649 1991 1 chr3A.!!$F1 1342
5 TraesCS7A01G480000 chr3A 106272652 106273239 587 False 1014.0 1014 97.7930 1 589 1 chr3A.!!$F2 588
6 TraesCS7A01G480000 chr3A 95567144 95568429 1285 False 747.5 902 88.4780 640 1991 2 chr3A.!!$F9 1351
7 TraesCS7A01G480000 chr3A 422488791 422489350 559 True 732.0 732 90.2270 1423 1991 1 chr3A.!!$R3 568
8 TraesCS7A01G480000 chr3A 460354503 460355042 539 False 638.0 638 88.0730 1450 1989 1 chr3A.!!$F7 539
9 TraesCS7A01G480000 chr5A 382435065 382435958 893 False 1098.0 1098 88.9620 1003 1897 1 chr5A.!!$F1 894
10 TraesCS7A01G480000 chr5A 640140032 640140617 585 False 1016.0 1016 97.9560 3 589 1 chr5A.!!$F4 586
11 TraesCS7A01G480000 chr5A 700215203 700215790 587 True 1016.0 1016 97.8000 1 591 1 chr5A.!!$R3 590
12 TraesCS7A01G480000 chr5A 382442894 382443777 883 False 1005.0 1005 87.2410 987 1893 1 chr5A.!!$F2 906
13 TraesCS7A01G480000 chr5A 136733439 136737829 4390 True 629.5 651 85.9515 1398 1991 2 chr5A.!!$R4 593
14 TraesCS7A01G480000 chr5A 395507545 395508186 641 False 608.0 608 83.9450 1344 1990 1 chr5A.!!$F3 646
15 TraesCS7A01G480000 chr6A 33806427 33807014 587 False 1014.0 1014 97.7930 1 589 1 chr6A.!!$F1 588
16 TraesCS7A01G480000 chr6A 482054778 482055365 587 False 1014.0 1014 97.7930 1 589 1 chr6A.!!$F2 588
17 TraesCS7A01G480000 chr2A 671352724 671353311 587 True 1014.0 1014 97.7930 1 589 1 chr2A.!!$R5 588
18 TraesCS7A01G480000 chr2A 501809764 501810350 586 False 1013.0 1013 97.7890 2 589 1 chr2A.!!$F1 587
19 TraesCS7A01G480000 chr2A 566480443 566481034 591 True 1011.0 1011 97.4700 1 593 1 chr2A.!!$R4 592
20 TraesCS7A01G480000 chr4A 126665974 126666538 564 False 625.0 625 86.7360 1423 1990 1 chr4A.!!$F1 567
21 TraesCS7A01G480000 chr4A 126972699 126973263 564 False 625.0 625 86.7360 1423 1990 1 chr4A.!!$F2 567
22 TraesCS7A01G480000 chr6B 128179302 128179898 596 True 606.0 606 85.2890 1399 1991 1 chr6B.!!$R1 592
23 TraesCS7A01G480000 chr5B 139711580 139712180 600 True 595.0 595 84.7790 1389 1990 1 chr5B.!!$R1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
735 736 0.032815 TCACGAATGACGCCAGAACA 59.967 50.0 0.0 0.0 46.94 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2217 6099 0.105778 TGTGTGATCACCTGTGCGAA 59.894 50.0 22.85 0.0 43.26 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 3.639094 CCAGAGATACCTCTCCGACAATT 59.361 47.826 0.00 0.00 46.38 2.32
151 152 1.265905 CAACCCAACAAGTACCTTCGC 59.734 52.381 0.00 0.00 0.00 4.70
169 170 0.318441 GCAGACACCTGTAGAGCACA 59.682 55.000 0.00 0.00 42.35 4.57
593 594 1.268539 GGGCATATTTCCTTCAACGCG 60.269 52.381 3.53 3.53 0.00 6.01
594 595 1.268539 GGCATATTTCCTTCAACGCGG 60.269 52.381 12.47 0.00 0.00 6.46
595 596 1.859998 GCATATTTCCTTCAACGCGGC 60.860 52.381 12.47 0.00 0.00 6.53
596 597 0.655733 ATATTTCCTTCAACGCGGCG 59.344 50.000 22.36 22.36 0.00 6.46
597 598 1.363145 TATTTCCTTCAACGCGGCGG 61.363 55.000 27.37 9.93 0.00 6.13
615 616 4.320456 CGGCCTGTGCTCACCAGT 62.320 66.667 0.00 0.00 37.74 4.00
616 617 2.670934 GGCCTGTGCTCACCAGTG 60.671 66.667 0.00 0.00 37.74 3.66
617 618 2.427320 GCCTGTGCTCACCAGTGA 59.573 61.111 0.00 0.00 38.06 3.41
618 619 1.227943 GCCTGTGCTCACCAGTGAA 60.228 57.895 1.58 0.00 39.39 3.18
619 620 1.233285 GCCTGTGCTCACCAGTGAAG 61.233 60.000 1.58 0.00 39.39 3.02
620 621 0.107456 CCTGTGCTCACCAGTGAAGT 59.893 55.000 1.58 0.00 39.39 3.01
621 622 1.344438 CCTGTGCTCACCAGTGAAGTA 59.656 52.381 1.58 0.00 39.39 2.24
622 623 2.611473 CCTGTGCTCACCAGTGAAGTAG 60.611 54.545 1.58 0.00 39.39 2.57
623 624 1.270305 TGTGCTCACCAGTGAAGTAGC 60.270 52.381 1.58 2.68 39.39 3.58
624 625 1.047801 TGCTCACCAGTGAAGTAGCA 58.952 50.000 7.99 7.99 39.39 3.49
625 626 1.001293 TGCTCACCAGTGAAGTAGCAG 59.999 52.381 7.99 0.00 39.39 4.24
626 627 1.719600 CTCACCAGTGAAGTAGCAGC 58.280 55.000 1.58 0.00 39.39 5.25
627 628 1.001293 CTCACCAGTGAAGTAGCAGCA 59.999 52.381 1.58 0.00 39.39 4.41
628 629 1.001293 TCACCAGTGAAGTAGCAGCAG 59.999 52.381 0.00 0.00 36.53 4.24
629 630 1.001293 CACCAGTGAAGTAGCAGCAGA 59.999 52.381 0.00 0.00 0.00 4.26
630 631 1.694150 ACCAGTGAAGTAGCAGCAGAA 59.306 47.619 0.00 0.00 0.00 3.02
631 632 2.289320 ACCAGTGAAGTAGCAGCAGAAG 60.289 50.000 0.00 0.00 0.00 2.85
632 633 2.028658 CCAGTGAAGTAGCAGCAGAAGA 60.029 50.000 0.00 0.00 0.00 2.87
633 634 2.992543 CAGTGAAGTAGCAGCAGAAGAC 59.007 50.000 0.00 0.00 0.00 3.01
634 635 1.989165 GTGAAGTAGCAGCAGAAGACG 59.011 52.381 0.00 0.00 0.00 4.18
635 636 1.886542 TGAAGTAGCAGCAGAAGACGA 59.113 47.619 0.00 0.00 0.00 4.20
636 637 2.296190 TGAAGTAGCAGCAGAAGACGAA 59.704 45.455 0.00 0.00 0.00 3.85
637 638 2.645730 AGTAGCAGCAGAAGACGAAG 57.354 50.000 0.00 0.00 0.00 3.79
638 639 1.203523 AGTAGCAGCAGAAGACGAAGG 59.796 52.381 0.00 0.00 0.00 3.46
639 640 1.067495 GTAGCAGCAGAAGACGAAGGT 60.067 52.381 0.00 0.00 0.00 3.50
640 641 0.320247 AGCAGCAGAAGACGAAGGTG 60.320 55.000 0.00 0.00 0.00 4.00
641 642 1.294659 GCAGCAGAAGACGAAGGTGG 61.295 60.000 0.00 0.00 0.00 4.61
642 643 0.034059 CAGCAGAAGACGAAGGTGGT 59.966 55.000 0.00 0.00 0.00 4.16
643 644 0.034059 AGCAGAAGACGAAGGTGGTG 59.966 55.000 0.00 0.00 0.00 4.17
644 645 0.951040 GCAGAAGACGAAGGTGGTGG 60.951 60.000 0.00 0.00 0.00 4.61
693 694 3.081409 GGCGGAGGTTGGCTCCTA 61.081 66.667 0.00 0.00 38.02 2.94
718 719 1.967494 TCGTGGTCGTCGGATGTCA 60.967 57.895 0.00 0.00 38.33 3.58
721 722 1.967494 TGGTCGTCGGATGTCACGA 60.967 57.895 0.00 0.00 42.61 4.35
735 736 0.032815 TCACGAATGACGCCAGAACA 59.967 50.000 0.00 0.00 46.94 3.18
900 948 3.650950 GGGGGTTGCAGAGAGGCA 61.651 66.667 0.00 0.00 43.19 4.75
918 969 2.156098 AAGGTGGAAGGAGCTGGCA 61.156 57.895 0.00 0.00 0.00 4.92
943 994 4.373116 GACGCTGGTGGCCTTCGA 62.373 66.667 3.32 0.00 37.74 3.71
978 1029 1.379977 CGGAGGAGGTAGCAGGACA 60.380 63.158 0.00 0.00 0.00 4.02
1149 1201 3.148279 GGTGAGGAGATCGGGCGT 61.148 66.667 0.00 0.00 0.00 5.68
1195 1247 2.515398 CAGTTCCTGTGGGTGGCA 59.485 61.111 0.00 0.00 0.00 4.92
1513 1584 5.795441 GTGCTCATTCCACGAAAATAGAAAC 59.205 40.000 0.00 0.00 0.00 2.78
1515 1586 5.163893 GCTCATTCCACGAAAATAGAAACGA 60.164 40.000 0.00 0.00 0.00 3.85
1596 1671 0.476771 GTGAGGTTTGGGAAGGTCCA 59.523 55.000 0.00 0.00 38.64 4.02
1688 1765 7.147915 CCAAGAATTAAGGTAGCAAAGGCATTA 60.148 37.037 0.00 0.00 44.61 1.90
1689 1766 8.416329 CAAGAATTAAGGTAGCAAAGGCATTAT 58.584 33.333 0.00 0.00 44.61 1.28
1709 1792 8.164153 GCATTATGATTTTTGCAAGTGTGTTAG 58.836 33.333 0.00 0.00 35.22 2.34
1940 5822 3.692101 ACCAACAACTCACATGACGAAAA 59.308 39.130 0.00 0.00 0.00 2.29
1942 5824 4.201910 CCAACAACTCACATGACGAAAACT 60.202 41.667 0.00 0.00 0.00 2.66
1943 5825 4.795970 ACAACTCACATGACGAAAACTC 57.204 40.909 0.00 0.00 0.00 3.01
1972 5854 1.328279 TGGAAGACGTCTGAAGCTCA 58.672 50.000 20.85 8.54 0.00 4.26
1991 5873 1.966451 GGTCTTGGGGCGTCACAAG 60.966 63.158 26.01 26.01 44.09 3.16
1992 5874 1.966451 GTCTTGGGGCGTCACAAGG 60.966 63.158 30.33 13.09 43.20 3.61
1993 5875 3.365265 CTTGGGGCGTCACAAGGC 61.365 66.667 24.38 0.00 40.20 4.35
1994 5876 4.196778 TTGGGGCGTCACAAGGCA 62.197 61.111 0.00 0.00 38.03 4.75
1995 5877 3.505790 TTGGGGCGTCACAAGGCAT 62.506 57.895 0.00 0.00 38.03 4.40
1996 5878 3.443045 GGGGCGTCACAAGGCATG 61.443 66.667 0.00 0.00 38.03 4.06
1997 5879 3.443045 GGGCGTCACAAGGCATGG 61.443 66.667 0.00 0.00 38.03 3.66
1998 5880 3.443045 GGCGTCACAAGGCATGGG 61.443 66.667 0.00 0.00 38.03 4.00
1999 5881 4.120331 GCGTCACAAGGCATGGGC 62.120 66.667 0.00 0.00 36.30 5.36
2000 5882 2.672651 CGTCACAAGGCATGGGCA 60.673 61.111 0.00 0.00 43.71 5.36
2001 5883 2.267351 CGTCACAAGGCATGGGCAA 61.267 57.895 0.00 0.00 43.71 4.52
2002 5884 1.588082 GTCACAAGGCATGGGCAAG 59.412 57.895 0.00 0.00 43.71 4.01
2003 5885 2.263540 CACAAGGCATGGGCAAGC 59.736 61.111 0.00 0.00 43.71 4.01
2004 5886 2.203669 ACAAGGCATGGGCAAGCA 60.204 55.556 0.00 0.00 43.71 3.91
2005 5887 1.837947 ACAAGGCATGGGCAAGCAA 60.838 52.632 0.00 0.00 43.71 3.91
2006 5888 1.079405 CAAGGCATGGGCAAGCAAG 60.079 57.895 0.00 0.00 43.71 4.01
2007 5889 1.228956 AAGGCATGGGCAAGCAAGA 60.229 52.632 0.00 0.00 43.71 3.02
2008 5890 0.832983 AAGGCATGGGCAAGCAAGAA 60.833 50.000 0.00 0.00 43.71 2.52
2009 5891 0.832983 AGGCATGGGCAAGCAAGAAA 60.833 50.000 0.00 0.00 43.71 2.52
2010 5892 0.251073 GGCATGGGCAAGCAAGAAAT 59.749 50.000 0.00 0.00 43.71 2.17
2011 5893 1.339342 GGCATGGGCAAGCAAGAAATT 60.339 47.619 0.00 0.00 43.71 1.82
2012 5894 1.735571 GCATGGGCAAGCAAGAAATTG 59.264 47.619 0.00 0.00 40.72 2.32
2013 5895 2.872842 GCATGGGCAAGCAAGAAATTGT 60.873 45.455 0.00 0.00 40.72 2.71
2014 5896 2.818130 TGGGCAAGCAAGAAATTGTC 57.182 45.000 0.00 0.00 0.00 3.18
2015 5897 2.318908 TGGGCAAGCAAGAAATTGTCT 58.681 42.857 0.00 0.00 38.69 3.41
2016 5898 3.495331 TGGGCAAGCAAGAAATTGTCTA 58.505 40.909 0.00 0.00 34.56 2.59
2017 5899 3.507233 TGGGCAAGCAAGAAATTGTCTAG 59.493 43.478 0.00 0.00 34.56 2.43
2018 5900 3.507622 GGGCAAGCAAGAAATTGTCTAGT 59.492 43.478 0.00 0.00 34.56 2.57
2019 5901 4.379918 GGGCAAGCAAGAAATTGTCTAGTC 60.380 45.833 0.00 0.00 34.56 2.59
2020 5902 4.398247 GCAAGCAAGAAATTGTCTAGTCG 58.602 43.478 0.00 0.00 34.56 4.18
2021 5903 4.152402 GCAAGCAAGAAATTGTCTAGTCGA 59.848 41.667 0.00 0.00 34.56 4.20
2022 5904 5.669848 GCAAGCAAGAAATTGTCTAGTCGAG 60.670 44.000 0.00 0.00 34.56 4.04
2023 5905 3.929610 AGCAAGAAATTGTCTAGTCGAGC 59.070 43.478 0.00 0.00 34.56 5.03
2024 5906 3.241804 GCAAGAAATTGTCTAGTCGAGCG 60.242 47.826 0.00 0.00 34.56 5.03
2025 5907 4.166523 CAAGAAATTGTCTAGTCGAGCGA 58.833 43.478 0.00 0.00 34.56 4.93
2026 5908 4.022464 AGAAATTGTCTAGTCGAGCGAG 57.978 45.455 0.00 0.00 33.56 5.03
2027 5909 3.690139 AGAAATTGTCTAGTCGAGCGAGA 59.310 43.478 0.00 0.00 33.56 4.04
2028 5910 4.156190 AGAAATTGTCTAGTCGAGCGAGAA 59.844 41.667 0.00 0.00 33.56 2.87
2029 5911 4.436242 AATTGTCTAGTCGAGCGAGAAA 57.564 40.909 0.00 0.00 30.74 2.52
2030 5912 4.640789 ATTGTCTAGTCGAGCGAGAAAT 57.359 40.909 0.00 0.00 30.74 2.17
2031 5913 3.677190 TGTCTAGTCGAGCGAGAAATC 57.323 47.619 0.00 0.00 30.74 2.17
2032 5914 3.271729 TGTCTAGTCGAGCGAGAAATCT 58.728 45.455 0.00 0.00 30.74 2.40
2033 5915 3.690139 TGTCTAGTCGAGCGAGAAATCTT 59.310 43.478 0.00 0.00 30.74 2.40
2034 5916 4.032355 GTCTAGTCGAGCGAGAAATCTTG 58.968 47.826 0.00 0.00 30.74 3.02
2044 5926 5.673337 GCGAGAAATCTTGCCATATTACA 57.327 39.130 10.96 0.00 45.47 2.41
2045 5927 6.246420 GCGAGAAATCTTGCCATATTACAT 57.754 37.500 10.96 0.00 45.47 2.29
2046 5928 6.672147 GCGAGAAATCTTGCCATATTACATT 58.328 36.000 10.96 0.00 45.47 2.71
2047 5929 6.580041 GCGAGAAATCTTGCCATATTACATTG 59.420 38.462 10.96 0.00 45.47 2.82
2048 5930 7.642669 CGAGAAATCTTGCCATATTACATTGT 58.357 34.615 0.00 0.00 0.00 2.71
2049 5931 8.131100 CGAGAAATCTTGCCATATTACATTGTT 58.869 33.333 0.00 0.00 0.00 2.83
2053 5935 9.480053 AAATCTTGCCATATTACATTGTTATGC 57.520 29.630 0.00 0.00 35.03 3.14
2054 5936 6.980593 TCTTGCCATATTACATTGTTATGCC 58.019 36.000 0.00 0.00 35.03 4.40
2055 5937 6.548993 TCTTGCCATATTACATTGTTATGCCA 59.451 34.615 0.00 0.00 35.03 4.92
2056 5938 6.721704 TGCCATATTACATTGTTATGCCAA 57.278 33.333 0.00 0.00 35.03 4.52
2057 5939 7.117285 TGCCATATTACATTGTTATGCCAAA 57.883 32.000 0.00 0.00 35.03 3.28
2058 5940 6.983307 TGCCATATTACATTGTTATGCCAAAC 59.017 34.615 0.00 0.00 35.03 2.93
2059 5941 6.983307 GCCATATTACATTGTTATGCCAAACA 59.017 34.615 0.00 0.00 37.58 2.83
2060 5942 7.656948 GCCATATTACATTGTTATGCCAAACAT 59.343 33.333 0.00 0.00 39.04 2.71
2061 5943 8.980610 CCATATTACATTGTTATGCCAAACATG 58.019 33.333 0.00 0.00 40.06 3.21
2062 5944 6.907206 ATTACATTGTTATGCCAAACATGC 57.093 33.333 0.00 0.00 40.06 4.06
2063 5945 3.598299 ACATTGTTATGCCAAACATGCC 58.402 40.909 0.00 0.00 40.06 4.40
2064 5946 3.007723 ACATTGTTATGCCAAACATGCCA 59.992 39.130 0.00 0.00 40.06 4.92
2065 5947 3.977134 TTGTTATGCCAAACATGCCAT 57.023 38.095 0.00 0.00 40.06 4.40
2066 5948 5.105023 ACATTGTTATGCCAAACATGCCATA 60.105 36.000 0.00 0.00 40.06 2.74
2067 5949 5.611128 TTGTTATGCCAAACATGCCATAT 57.389 34.783 0.00 0.00 40.06 1.78
2068 5950 5.611128 TGTTATGCCAAACATGCCATATT 57.389 34.783 0.00 0.00 40.06 1.28
2069 5951 5.599732 TGTTATGCCAAACATGCCATATTC 58.400 37.500 0.00 0.00 40.06 1.75
2070 5952 5.128335 TGTTATGCCAAACATGCCATATTCA 59.872 36.000 0.00 0.00 40.06 2.57
2071 5953 4.757019 ATGCCAAACATGCCATATTCAA 57.243 36.364 0.00 0.00 37.70 2.69
2072 5954 4.548451 TGCCAAACATGCCATATTCAAA 57.452 36.364 0.00 0.00 0.00 2.69
2073 5955 5.100344 TGCCAAACATGCCATATTCAAAT 57.900 34.783 0.00 0.00 0.00 2.32
2074 5956 4.876679 TGCCAAACATGCCATATTCAAATG 59.123 37.500 0.00 0.00 0.00 2.32
2075 5957 8.169938 TATGCCAAACATGCCATATTCAAATGG 61.170 37.037 0.00 0.00 43.35 3.16
2076 5958 5.430007 CCAAACATGCCATATTCAAATGGT 58.570 37.500 4.89 0.00 46.93 3.55
2077 5959 5.294799 CCAAACATGCCATATTCAAATGGTG 59.705 40.000 4.89 0.00 46.93 4.17
2078 5960 4.675976 ACATGCCATATTCAAATGGTGG 57.324 40.909 4.89 5.21 46.93 4.61
2079 5961 4.032310 ACATGCCATATTCAAATGGTGGT 58.968 39.130 4.89 0.00 46.93 4.16
2080 5962 5.207354 ACATGCCATATTCAAATGGTGGTA 58.793 37.500 4.89 6.56 46.93 3.25
2081 5963 5.302568 ACATGCCATATTCAAATGGTGGTAG 59.697 40.000 4.89 4.67 46.93 3.18
2082 5964 3.636300 TGCCATATTCAAATGGTGGTAGC 59.364 43.478 4.89 0.00 46.93 3.58
2083 5965 3.891366 GCCATATTCAAATGGTGGTAGCT 59.109 43.478 4.89 0.00 46.93 3.32
2084 5966 5.070001 GCCATATTCAAATGGTGGTAGCTA 58.930 41.667 4.89 0.00 46.93 3.32
2085 5967 5.182001 GCCATATTCAAATGGTGGTAGCTAG 59.818 44.000 0.00 0.00 46.93 3.42
2086 5968 6.299141 CCATATTCAAATGGTGGTAGCTAGT 58.701 40.000 0.00 0.00 41.38 2.57
2087 5969 7.450074 CCATATTCAAATGGTGGTAGCTAGTA 58.550 38.462 0.00 0.00 41.38 1.82
2088 5970 7.604164 CCATATTCAAATGGTGGTAGCTAGTAG 59.396 40.741 0.00 0.00 41.38 2.57
2089 5971 6.561519 ATTCAAATGGTGGTAGCTAGTAGT 57.438 37.500 0.00 0.00 0.00 2.73
2090 5972 6.368779 TTCAAATGGTGGTAGCTAGTAGTT 57.631 37.500 0.00 0.00 0.00 2.24
2091 5973 7.484993 TTCAAATGGTGGTAGCTAGTAGTTA 57.515 36.000 0.00 0.00 0.00 2.24
2092 5974 7.484993 TCAAATGGTGGTAGCTAGTAGTTAA 57.515 36.000 0.00 0.00 0.00 2.01
2093 5975 7.909518 TCAAATGGTGGTAGCTAGTAGTTAAA 58.090 34.615 0.00 0.00 0.00 1.52
2094 5976 8.545472 TCAAATGGTGGTAGCTAGTAGTTAAAT 58.455 33.333 0.00 0.00 0.00 1.40
2095 5977 9.174166 CAAATGGTGGTAGCTAGTAGTTAAATT 57.826 33.333 0.00 0.00 0.00 1.82
2127 6009 9.508642 TGTGACCTAAATTAATATTGACACACA 57.491 29.630 0.00 0.00 0.00 3.72
2147 6029 9.638239 ACACACATGTAATATCAAAAATTCACC 57.362 29.630 0.00 0.00 37.26 4.02
2148 6030 9.086336 CACACATGTAATATCAAAAATTCACCC 57.914 33.333 0.00 0.00 0.00 4.61
2149 6031 8.257306 ACACATGTAATATCAAAAATTCACCCC 58.743 33.333 0.00 0.00 0.00 4.95
2150 6032 7.434897 CACATGTAATATCAAAAATTCACCCCG 59.565 37.037 0.00 0.00 0.00 5.73
2151 6033 7.340743 ACATGTAATATCAAAAATTCACCCCGA 59.659 33.333 0.00 0.00 0.00 5.14
2152 6034 7.889873 TGTAATATCAAAAATTCACCCCGAT 57.110 32.000 0.00 0.00 0.00 4.18
2153 6035 8.982091 TGTAATATCAAAAATTCACCCCGATA 57.018 30.769 0.00 0.00 0.00 2.92
2154 6036 9.062524 TGTAATATCAAAAATTCACCCCGATAG 57.937 33.333 0.00 0.00 0.00 2.08
2155 6037 9.063615 GTAATATCAAAAATTCACCCCGATAGT 57.936 33.333 0.00 0.00 0.00 2.12
2157 6039 9.635404 AATATCAAAAATTCACCCCGATAGTAA 57.365 29.630 0.00 0.00 0.00 2.24
2158 6040 7.948034 ATCAAAAATTCACCCCGATAGTAAA 57.052 32.000 0.00 0.00 0.00 2.01
2159 6041 7.762588 TCAAAAATTCACCCCGATAGTAAAA 57.237 32.000 0.00 0.00 0.00 1.52
2160 6042 8.179509 TCAAAAATTCACCCCGATAGTAAAAA 57.820 30.769 0.00 0.00 0.00 1.94
2161 6043 8.083462 TCAAAAATTCACCCCGATAGTAAAAAC 58.917 33.333 0.00 0.00 0.00 2.43
2162 6044 7.770366 AAAATTCACCCCGATAGTAAAAACT 57.230 32.000 0.00 0.00 0.00 2.66
2163 6045 8.866970 AAAATTCACCCCGATAGTAAAAACTA 57.133 30.769 0.00 0.00 0.00 2.24
2164 6046 8.866970 AAATTCACCCCGATAGTAAAAACTAA 57.133 30.769 0.00 0.00 0.00 2.24
2165 6047 8.866970 AATTCACCCCGATAGTAAAAACTAAA 57.133 30.769 0.00 0.00 0.00 1.85
2166 6048 9.470399 AATTCACCCCGATAGTAAAAACTAAAT 57.530 29.630 0.00 0.00 0.00 1.40
2167 6049 8.866970 TTCACCCCGATAGTAAAAACTAAATT 57.133 30.769 0.00 0.00 0.00 1.82
2168 6050 9.956640 TTCACCCCGATAGTAAAAACTAAATTA 57.043 29.630 0.00 0.00 0.00 1.40
2169 6051 9.382275 TCACCCCGATAGTAAAAACTAAATTAC 57.618 33.333 0.00 0.00 33.25 1.89
2170 6052 8.615211 CACCCCGATAGTAAAAACTAAATTACC 58.385 37.037 0.00 0.00 33.47 2.85
2171 6053 7.495606 ACCCCGATAGTAAAAACTAAATTACCG 59.504 37.037 0.00 0.00 33.47 4.02
2172 6054 7.347448 CCCGATAGTAAAAACTAAATTACCGC 58.653 38.462 0.00 0.00 33.47 5.68
2173 6055 7.347448 CCGATAGTAAAAACTAAATTACCGCC 58.653 38.462 0.00 0.00 33.47 6.13
2174 6056 7.225341 CCGATAGTAAAAACTAAATTACCGCCT 59.775 37.037 0.00 0.00 33.47 5.52
2175 6057 9.248291 CGATAGTAAAAACTAAATTACCGCCTA 57.752 33.333 0.00 0.00 33.47 3.93
2178 6060 8.484641 AGTAAAAACTAAATTACCGCCTAGAC 57.515 34.615 0.00 0.00 33.47 2.59
2179 6061 8.316946 AGTAAAAACTAAATTACCGCCTAGACT 58.683 33.333 0.00 0.00 33.47 3.24
2180 6062 6.980051 AAAACTAAATTACCGCCTAGACTG 57.020 37.500 0.00 0.00 0.00 3.51
2181 6063 4.056092 ACTAAATTACCGCCTAGACTGC 57.944 45.455 0.00 0.00 0.00 4.40
2187 6069 2.333225 CGCCTAGACTGCGCCTAG 59.667 66.667 4.18 8.63 46.01 3.02
2192 6074 0.038709 CTAGACTGCGCCTAGGATGC 60.039 60.000 14.75 16.18 32.14 3.91
2193 6075 0.468214 TAGACTGCGCCTAGGATGCT 60.468 55.000 22.38 7.70 0.00 3.79
2194 6076 1.144936 GACTGCGCCTAGGATGCTT 59.855 57.895 22.38 12.43 0.00 3.91
2195 6077 0.389391 GACTGCGCCTAGGATGCTTA 59.611 55.000 22.38 7.03 0.00 3.09
2196 6078 0.830648 ACTGCGCCTAGGATGCTTAA 59.169 50.000 22.38 6.43 0.00 1.85
2197 6079 1.202580 ACTGCGCCTAGGATGCTTAAG 60.203 52.381 22.38 15.62 0.00 1.85
2198 6080 0.532862 TGCGCCTAGGATGCTTAAGC 60.533 55.000 20.84 20.84 42.50 3.09
2209 6091 3.918102 GCTTAAGCATACGGGCAAC 57.082 52.632 22.59 0.00 41.59 4.17
2221 6103 4.868195 GGCAACCACTTCATTCGC 57.132 55.556 0.00 0.00 0.00 4.70
2222 6104 1.956043 GGCAACCACTTCATTCGCA 59.044 52.632 0.00 0.00 0.00 5.10
2223 6105 0.387239 GGCAACCACTTCATTCGCAC 60.387 55.000 0.00 0.00 0.00 5.34
2224 6106 0.310543 GCAACCACTTCATTCGCACA 59.689 50.000 0.00 0.00 0.00 4.57
2225 6107 1.664016 GCAACCACTTCATTCGCACAG 60.664 52.381 0.00 0.00 0.00 3.66
2226 6108 1.069022 CAACCACTTCATTCGCACAGG 60.069 52.381 0.00 0.00 0.00 4.00
2227 6109 0.108585 ACCACTTCATTCGCACAGGT 59.891 50.000 0.00 0.00 0.00 4.00
2228 6110 0.518636 CCACTTCATTCGCACAGGTG 59.481 55.000 0.00 0.00 0.00 4.00
2229 6111 1.511850 CACTTCATTCGCACAGGTGA 58.488 50.000 3.10 0.00 0.00 4.02
2230 6112 2.079158 CACTTCATTCGCACAGGTGAT 58.921 47.619 3.10 0.00 32.68 3.06
2231 6113 2.094894 CACTTCATTCGCACAGGTGATC 59.905 50.000 3.10 0.00 32.68 2.92
2232 6114 2.289631 ACTTCATTCGCACAGGTGATCA 60.290 45.455 3.10 0.00 32.68 2.92
2233 6115 1.725641 TCATTCGCACAGGTGATCAC 58.274 50.000 17.91 17.91 32.68 3.06
2234 6116 1.001860 TCATTCGCACAGGTGATCACA 59.998 47.619 26.47 4.44 32.68 3.58
2235 6117 1.129251 CATTCGCACAGGTGATCACAC 59.871 52.381 26.47 15.79 45.27 3.82
2246 6128 2.069273 GTGATCACACACACACCTAGC 58.931 52.381 21.07 0.00 45.32 3.42
2247 6129 1.691434 TGATCACACACACACCTAGCA 59.309 47.619 0.00 0.00 0.00 3.49
2248 6130 2.103941 TGATCACACACACACCTAGCAA 59.896 45.455 0.00 0.00 0.00 3.91
2249 6131 2.238942 TCACACACACACCTAGCAAG 57.761 50.000 0.00 0.00 0.00 4.01
2250 6132 0.588252 CACACACACACCTAGCAAGC 59.412 55.000 0.00 0.00 0.00 4.01
2251 6133 0.180171 ACACACACACCTAGCAAGCA 59.820 50.000 0.00 0.00 0.00 3.91
2252 6134 1.308047 CACACACACCTAGCAAGCAA 58.692 50.000 0.00 0.00 0.00 3.91
2253 6135 1.002468 CACACACACCTAGCAAGCAAC 60.002 52.381 0.00 0.00 0.00 4.17
2254 6136 1.308047 CACACACCTAGCAAGCAACA 58.692 50.000 0.00 0.00 0.00 3.33
2255 6137 1.002468 CACACACCTAGCAAGCAACAC 60.002 52.381 0.00 0.00 0.00 3.32
2256 6138 0.593128 CACACCTAGCAAGCAACACC 59.407 55.000 0.00 0.00 0.00 4.16
2257 6139 0.537371 ACACCTAGCAAGCAACACCC 60.537 55.000 0.00 0.00 0.00 4.61
2258 6140 1.302511 ACCTAGCAAGCAACACCCG 60.303 57.895 0.00 0.00 0.00 5.28
2259 6141 1.003839 CCTAGCAAGCAACACCCGA 60.004 57.895 0.00 0.00 0.00 5.14
2260 6142 1.021390 CCTAGCAAGCAACACCCGAG 61.021 60.000 0.00 0.00 0.00 4.63
2261 6143 1.003839 TAGCAAGCAACACCCGAGG 60.004 57.895 0.00 0.00 0.00 4.63
2262 6144 1.476845 TAGCAAGCAACACCCGAGGA 61.477 55.000 0.00 0.00 0.00 3.71
2263 6145 2.328099 GCAAGCAACACCCGAGGAG 61.328 63.158 0.00 0.00 0.00 3.69
2264 6146 1.371183 CAAGCAACACCCGAGGAGA 59.629 57.895 0.00 0.00 0.00 3.71
2265 6147 0.671781 CAAGCAACACCCGAGGAGAG 60.672 60.000 0.00 0.00 0.00 3.20
2266 6148 1.831652 AAGCAACACCCGAGGAGAGG 61.832 60.000 0.00 0.00 0.00 3.69
2273 6155 3.535962 CCGAGGAGAGGGAGCAGC 61.536 72.222 0.00 0.00 0.00 5.25
2274 6156 3.535962 CGAGGAGAGGGAGCAGCC 61.536 72.222 0.00 0.00 0.00 4.85
2275 6157 2.042025 GAGGAGAGGGAGCAGCCT 60.042 66.667 0.00 0.00 36.66 4.58
2276 6158 1.231641 GAGGAGAGGGAGCAGCCTA 59.768 63.158 0.00 0.00 36.66 3.93
2277 6159 0.397816 GAGGAGAGGGAGCAGCCTAA 60.398 60.000 0.00 0.00 36.66 2.69
2278 6160 0.398381 AGGAGAGGGAGCAGCCTAAG 60.398 60.000 0.00 0.00 36.66 2.18
2279 6161 1.445518 GAGAGGGAGCAGCCTAAGC 59.554 63.158 0.00 0.00 40.32 3.09
2280 6162 2.038814 GAGAGGGAGCAGCCTAAGCC 62.039 65.000 0.00 0.00 41.25 4.35
2281 6163 2.041928 AGGGAGCAGCCTAAGCCT 59.958 61.111 0.00 0.00 41.25 4.58
2282 6164 1.617839 AGGGAGCAGCCTAAGCCTT 60.618 57.895 0.00 0.00 41.25 4.35
2283 6165 1.452833 GGGAGCAGCCTAAGCCTTG 60.453 63.158 0.00 0.00 41.25 3.61
2284 6166 1.452833 GGAGCAGCCTAAGCCTTGG 60.453 63.158 0.00 0.00 41.25 3.61
2289 6171 2.677228 GCCTAAGCCTTGGCCAGA 59.323 61.111 5.11 0.00 43.11 3.86
2290 6172 1.750780 GCCTAAGCCTTGGCCAGAC 60.751 63.158 5.11 0.00 43.11 3.51
2291 6173 1.077429 CCTAAGCCTTGGCCAGACC 60.077 63.158 5.11 0.00 39.84 3.85
2292 6174 1.566298 CCTAAGCCTTGGCCAGACCT 61.566 60.000 5.11 0.00 40.22 3.85
2293 6175 0.107459 CTAAGCCTTGGCCAGACCTC 60.107 60.000 5.11 0.00 40.22 3.85
2294 6176 1.562672 TAAGCCTTGGCCAGACCTCC 61.563 60.000 5.11 0.00 40.22 4.30
2295 6177 3.334054 GCCTTGGCCAGACCTCCT 61.334 66.667 5.11 0.00 40.22 3.69
2296 6178 2.911926 GCCTTGGCCAGACCTCCTT 61.912 63.158 5.11 0.00 40.22 3.36
2297 6179 1.301293 CCTTGGCCAGACCTCCTTC 59.699 63.158 5.11 0.00 40.22 3.46
2298 6180 1.204113 CCTTGGCCAGACCTCCTTCT 61.204 60.000 5.11 0.00 40.22 2.85
2299 6181 0.695347 CTTGGCCAGACCTCCTTCTT 59.305 55.000 5.11 0.00 40.22 2.52
2300 6182 0.693049 TTGGCCAGACCTCCTTCTTC 59.307 55.000 5.11 0.00 40.22 2.87
2301 6183 1.201429 TGGCCAGACCTCCTTCTTCC 61.201 60.000 0.00 0.00 40.22 3.46
2302 6184 0.912006 GGCCAGACCTCCTTCTTCCT 60.912 60.000 0.00 0.00 34.51 3.36
2303 6185 0.988063 GCCAGACCTCCTTCTTCCTT 59.012 55.000 0.00 0.00 0.00 3.36
2304 6186 1.065782 GCCAGACCTCCTTCTTCCTTC 60.066 57.143 0.00 0.00 0.00 3.46
2305 6187 2.260822 CCAGACCTCCTTCTTCCTTCA 58.739 52.381 0.00 0.00 0.00 3.02
2306 6188 2.843113 CCAGACCTCCTTCTTCCTTCAT 59.157 50.000 0.00 0.00 0.00 2.57
2307 6189 4.033709 CCAGACCTCCTTCTTCCTTCATA 58.966 47.826 0.00 0.00 0.00 2.15
2308 6190 4.141824 CCAGACCTCCTTCTTCCTTCATAC 60.142 50.000 0.00 0.00 0.00 2.39
2309 6191 4.467795 CAGACCTCCTTCTTCCTTCATACA 59.532 45.833 0.00 0.00 0.00 2.29
2310 6192 4.714308 AGACCTCCTTCTTCCTTCATACAG 59.286 45.833 0.00 0.00 0.00 2.74
2311 6193 3.198853 ACCTCCTTCTTCCTTCATACAGC 59.801 47.826 0.00 0.00 0.00 4.40
2312 6194 3.454082 CCTCCTTCTTCCTTCATACAGCT 59.546 47.826 0.00 0.00 0.00 4.24
2313 6195 4.442753 CCTCCTTCTTCCTTCATACAGCTC 60.443 50.000 0.00 0.00 0.00 4.09
2314 6196 4.357325 TCCTTCTTCCTTCATACAGCTCT 58.643 43.478 0.00 0.00 0.00 4.09
2315 6197 5.519808 TCCTTCTTCCTTCATACAGCTCTA 58.480 41.667 0.00 0.00 0.00 2.43
2316 6198 5.596361 TCCTTCTTCCTTCATACAGCTCTAG 59.404 44.000 0.00 0.00 0.00 2.43
2317 6199 5.221422 CCTTCTTCCTTCATACAGCTCTAGG 60.221 48.000 0.00 0.00 0.00 3.02
2318 6200 5.130705 TCTTCCTTCATACAGCTCTAGGA 57.869 43.478 0.00 0.00 0.00 2.94
2319 6201 5.136828 TCTTCCTTCATACAGCTCTAGGAG 58.863 45.833 0.00 0.00 33.65 3.69
2329 6211 3.737127 CTCTAGGAGCAGCTGTGTG 57.263 57.895 16.64 0.55 0.00 3.82
2330 6212 0.459934 CTCTAGGAGCAGCTGTGTGC 60.460 60.000 16.64 8.59 44.35 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 4.709886 TCGAGATTAGGATTTGTCACTCCA 59.290 41.667 3.96 0.00 33.75 3.86
151 152 3.325293 AATGTGCTCTACAGGTGTCTG 57.675 47.619 0.00 0.00 43.80 3.51
169 170 9.693739 TCACAACATAACTGGGTGATTATAAAT 57.306 29.630 0.00 0.00 36.49 1.40
360 361 5.357032 AGTTGTCATTTGATTAACGGGATCC 59.643 40.000 1.92 1.92 32.73 3.36
598 599 4.320456 ACTGGTGAGCACAGGCCG 62.320 66.667 0.00 0.00 42.56 6.13
599 600 2.670934 CACTGGTGAGCACAGGCC 60.671 66.667 0.00 0.00 42.56 5.19
600 601 1.227943 TTCACTGGTGAGCACAGGC 60.228 57.895 2.75 0.00 41.13 4.85
601 602 0.107456 ACTTCACTGGTGAGCACAGG 59.893 55.000 2.75 0.00 41.13 4.00
602 603 2.681706 CTACTTCACTGGTGAGCACAG 58.318 52.381 2.75 1.81 41.13 3.66
603 604 1.270305 GCTACTTCACTGGTGAGCACA 60.270 52.381 2.75 0.00 41.13 4.57
604 605 1.270305 TGCTACTTCACTGGTGAGCAC 60.270 52.381 10.04 0.00 41.13 4.40
605 606 1.001293 CTGCTACTTCACTGGTGAGCA 59.999 52.381 12.45 12.45 41.13 4.26
606 607 1.719600 CTGCTACTTCACTGGTGAGC 58.280 55.000 3.62 4.94 41.13 4.26
607 608 1.001293 TGCTGCTACTTCACTGGTGAG 59.999 52.381 0.00 2.09 41.13 3.51
608 609 1.001293 CTGCTGCTACTTCACTGGTGA 59.999 52.381 0.00 0.00 37.91 4.02
609 610 1.001293 TCTGCTGCTACTTCACTGGTG 59.999 52.381 0.00 0.00 0.00 4.17
610 611 1.342074 TCTGCTGCTACTTCACTGGT 58.658 50.000 0.00 0.00 0.00 4.00
611 612 2.028658 TCTTCTGCTGCTACTTCACTGG 60.029 50.000 0.00 0.00 0.00 4.00
612 613 2.992543 GTCTTCTGCTGCTACTTCACTG 59.007 50.000 0.00 0.00 0.00 3.66
613 614 2.352225 CGTCTTCTGCTGCTACTTCACT 60.352 50.000 0.00 0.00 0.00 3.41
614 615 1.989165 CGTCTTCTGCTGCTACTTCAC 59.011 52.381 0.00 0.00 0.00 3.18
615 616 1.886542 TCGTCTTCTGCTGCTACTTCA 59.113 47.619 0.00 0.00 0.00 3.02
616 617 2.638556 TCGTCTTCTGCTGCTACTTC 57.361 50.000 0.00 0.00 0.00 3.01
617 618 2.353208 CCTTCGTCTTCTGCTGCTACTT 60.353 50.000 0.00 0.00 0.00 2.24
618 619 1.203523 CCTTCGTCTTCTGCTGCTACT 59.796 52.381 0.00 0.00 0.00 2.57
619 620 1.067495 ACCTTCGTCTTCTGCTGCTAC 60.067 52.381 0.00 0.00 0.00 3.58
620 621 1.067565 CACCTTCGTCTTCTGCTGCTA 60.068 52.381 0.00 0.00 0.00 3.49
621 622 0.320247 CACCTTCGTCTTCTGCTGCT 60.320 55.000 0.00 0.00 0.00 4.24
622 623 1.294659 CCACCTTCGTCTTCTGCTGC 61.295 60.000 0.00 0.00 0.00 5.25
623 624 0.034059 ACCACCTTCGTCTTCTGCTG 59.966 55.000 0.00 0.00 0.00 4.41
624 625 0.034059 CACCACCTTCGTCTTCTGCT 59.966 55.000 0.00 0.00 0.00 4.24
625 626 0.951040 CCACCACCTTCGTCTTCTGC 60.951 60.000 0.00 0.00 0.00 4.26
626 627 0.393077 ACCACCACCTTCGTCTTCTG 59.607 55.000 0.00 0.00 0.00 3.02
627 628 0.680061 GACCACCACCTTCGTCTTCT 59.320 55.000 0.00 0.00 0.00 2.85
628 629 0.666577 CGACCACCACCTTCGTCTTC 60.667 60.000 0.00 0.00 0.00 2.87
629 630 1.366366 CGACCACCACCTTCGTCTT 59.634 57.895 0.00 0.00 0.00 3.01
630 631 2.571216 CCGACCACCACCTTCGTCT 61.571 63.158 0.00 0.00 0.00 4.18
631 632 2.048503 CCGACCACCACCTTCGTC 60.049 66.667 0.00 0.00 0.00 4.20
632 633 4.309950 GCCGACCACCACCTTCGT 62.310 66.667 0.00 0.00 0.00 3.85
634 635 4.717313 GGGCCGACCACCACCTTC 62.717 72.222 0.00 0.00 39.85 3.46
693 694 2.564975 GACGACCACGACGACCAT 59.435 61.111 0.00 0.00 42.66 3.55
718 719 1.148310 CTTGTTCTGGCGTCATTCGT 58.852 50.000 0.00 0.00 42.13 3.85
721 722 2.257353 GCCTTGTTCTGGCGTCATT 58.743 52.632 0.00 0.00 41.03 2.57
735 736 0.034670 GTTGCTCCTCCTCATGCCTT 60.035 55.000 0.00 0.00 0.00 4.35
900 948 2.156098 TGCCAGCTCCTTCCACCTT 61.156 57.895 0.00 0.00 0.00 3.50
1037 1088 4.129737 CGCACCCATCGTCCTCGT 62.130 66.667 0.00 0.00 38.33 4.18
1057 1108 2.657237 CCCTGCCTCGTTCTCGTT 59.343 61.111 0.00 0.00 38.33 3.85
1149 1201 1.447838 GCAAATCCTCTCGCGTCCA 60.448 57.895 5.77 0.00 0.00 4.02
1195 1247 1.112315 ATCTCCATCTTCCTCGCGCT 61.112 55.000 5.56 0.00 0.00 5.92
1513 1584 9.624697 TTGAATTTAATCTTTCAATCTTGGTCG 57.375 29.630 5.22 0.00 37.03 4.79
1688 1765 5.070313 ACCCTAACACACTTGCAAAAATCAT 59.930 36.000 0.00 0.00 0.00 2.45
1689 1766 4.404073 ACCCTAACACACTTGCAAAAATCA 59.596 37.500 0.00 0.00 0.00 2.57
1766 1851 7.595819 TCACATGGTGGTTTCTCTTTAAAAT 57.404 32.000 0.00 0.00 33.87 1.82
1916 5797 2.869801 TCGTCATGTGAGTTGTTGGTTC 59.130 45.455 0.00 0.00 0.00 3.62
1972 5854 2.397413 CTTGTGACGCCCCAAGACCT 62.397 60.000 3.23 0.00 40.36 3.85
1991 5873 0.251073 ATTTCTTGCTTGCCCATGCC 59.749 50.000 4.05 0.00 36.33 4.40
1992 5874 1.735571 CAATTTCTTGCTTGCCCATGC 59.264 47.619 0.00 0.00 38.26 4.06
1993 5875 2.997986 GACAATTTCTTGCTTGCCCATG 59.002 45.455 0.00 0.00 35.69 3.66
1994 5876 2.901839 AGACAATTTCTTGCTTGCCCAT 59.098 40.909 0.00 0.00 35.69 4.00
1995 5877 2.318908 AGACAATTTCTTGCTTGCCCA 58.681 42.857 0.00 0.00 35.69 5.36
1996 5878 3.507622 ACTAGACAATTTCTTGCTTGCCC 59.492 43.478 0.00 0.00 35.69 5.36
1997 5879 4.670221 CGACTAGACAATTTCTTGCTTGCC 60.670 45.833 0.00 0.00 35.69 4.52
1998 5880 4.152402 TCGACTAGACAATTTCTTGCTTGC 59.848 41.667 0.00 0.00 35.69 4.01
1999 5881 5.669848 GCTCGACTAGACAATTTCTTGCTTG 60.670 44.000 0.00 0.00 35.69 4.01
2000 5882 4.390297 GCTCGACTAGACAATTTCTTGCTT 59.610 41.667 0.00 0.00 35.69 3.91
2001 5883 3.929610 GCTCGACTAGACAATTTCTTGCT 59.070 43.478 0.00 0.00 35.69 3.91
2002 5884 3.241804 CGCTCGACTAGACAATTTCTTGC 60.242 47.826 0.00 0.00 35.69 4.01
2003 5885 4.166523 TCGCTCGACTAGACAATTTCTTG 58.833 43.478 0.00 0.00 35.55 3.02
2004 5886 4.156190 TCTCGCTCGACTAGACAATTTCTT 59.844 41.667 0.00 0.00 35.55 2.52
2005 5887 3.690139 TCTCGCTCGACTAGACAATTTCT 59.310 43.478 0.00 0.00 38.51 2.52
2006 5888 4.017380 TCTCGCTCGACTAGACAATTTC 57.983 45.455 0.00 0.00 0.00 2.17
2007 5889 4.436242 TTCTCGCTCGACTAGACAATTT 57.564 40.909 0.00 0.00 0.00 1.82
2008 5890 4.436242 TTTCTCGCTCGACTAGACAATT 57.564 40.909 0.00 0.00 0.00 2.32
2009 5891 4.336993 AGATTTCTCGCTCGACTAGACAAT 59.663 41.667 0.00 0.00 0.00 2.71
2010 5892 3.690139 AGATTTCTCGCTCGACTAGACAA 59.310 43.478 0.00 0.00 0.00 3.18
2011 5893 3.271729 AGATTTCTCGCTCGACTAGACA 58.728 45.455 0.00 0.00 0.00 3.41
2012 5894 3.955771 AGATTTCTCGCTCGACTAGAC 57.044 47.619 0.00 0.00 0.00 2.59
2013 5895 3.487711 GCAAGATTTCTCGCTCGACTAGA 60.488 47.826 0.00 0.00 0.00 2.43
2014 5896 2.786578 GCAAGATTTCTCGCTCGACTAG 59.213 50.000 0.00 0.00 0.00 2.57
2015 5897 2.479730 GGCAAGATTTCTCGCTCGACTA 60.480 50.000 0.00 0.00 0.00 2.59
2016 5898 1.634702 GCAAGATTTCTCGCTCGACT 58.365 50.000 0.00 0.00 0.00 4.18
2017 5899 0.647925 GGCAAGATTTCTCGCTCGAC 59.352 55.000 0.00 0.00 0.00 4.20
2018 5900 0.246360 TGGCAAGATTTCTCGCTCGA 59.754 50.000 0.00 0.00 0.00 4.04
2019 5901 1.293924 ATGGCAAGATTTCTCGCTCG 58.706 50.000 0.00 0.00 0.00 5.03
2020 5902 5.466728 TGTAATATGGCAAGATTTCTCGCTC 59.533 40.000 0.00 0.00 0.00 5.03
2021 5903 5.368145 TGTAATATGGCAAGATTTCTCGCT 58.632 37.500 0.00 0.00 0.00 4.93
2022 5904 5.673337 TGTAATATGGCAAGATTTCTCGC 57.327 39.130 0.00 0.00 0.00 5.03
2023 5905 7.642669 ACAATGTAATATGGCAAGATTTCTCG 58.357 34.615 0.00 0.00 0.00 4.04
2027 5909 9.480053 GCATAACAATGTAATATGGCAAGATTT 57.520 29.630 7.07 0.00 0.00 2.17
2028 5910 8.090214 GGCATAACAATGTAATATGGCAAGATT 58.910 33.333 20.02 0.00 46.21 2.40
2029 5911 7.605449 GGCATAACAATGTAATATGGCAAGAT 58.395 34.615 20.02 0.00 46.21 2.40
2030 5912 6.980593 GGCATAACAATGTAATATGGCAAGA 58.019 36.000 20.02 0.00 46.21 3.02
2034 5916 6.983307 TGTTTGGCATAACAATGTAATATGGC 59.017 34.615 18.82 18.82 46.77 4.40
2035 5917 8.980610 CATGTTTGGCATAACAATGTAATATGG 58.019 33.333 15.58 0.00 41.02 2.74
2036 5918 8.489559 GCATGTTTGGCATAACAATGTAATATG 58.510 33.333 15.58 7.07 41.02 1.78
2037 5919 8.592105 GCATGTTTGGCATAACAATGTAATAT 57.408 30.769 15.58 0.00 41.02 1.28
2039 5921 6.907206 GCATGTTTGGCATAACAATGTAAT 57.093 33.333 15.58 0.92 41.02 1.89
2053 5935 5.994887 CCATTTGAATATGGCATGTTTGG 57.005 39.130 10.98 10.34 38.75 3.28
2063 5945 8.150945 ACTACTAGCTACCACCATTTGAATATG 58.849 37.037 0.00 0.00 0.00 1.78
2064 5946 8.263854 ACTACTAGCTACCACCATTTGAATAT 57.736 34.615 0.00 0.00 0.00 1.28
2065 5947 7.670605 ACTACTAGCTACCACCATTTGAATA 57.329 36.000 0.00 0.00 0.00 1.75
2066 5948 6.561519 ACTACTAGCTACCACCATTTGAAT 57.438 37.500 0.00 0.00 0.00 2.57
2067 5949 6.368779 AACTACTAGCTACCACCATTTGAA 57.631 37.500 0.00 0.00 0.00 2.69
2068 5950 7.484993 TTAACTACTAGCTACCACCATTTGA 57.515 36.000 0.00 0.00 0.00 2.69
2069 5951 8.732746 ATTTAACTACTAGCTACCACCATTTG 57.267 34.615 0.00 0.00 0.00 2.32
2101 5983 9.508642 TGTGTGTCAATATTAATTTAGGTCACA 57.491 29.630 0.00 1.28 0.00 3.58
2121 6003 9.638239 GGTGAATTTTTGATATTACATGTGTGT 57.362 29.630 9.11 0.00 42.39 3.72
2122 6004 9.086336 GGGTGAATTTTTGATATTACATGTGTG 57.914 33.333 9.11 0.00 0.00 3.82
2123 6005 8.257306 GGGGTGAATTTTTGATATTACATGTGT 58.743 33.333 9.11 0.00 0.00 3.72
2124 6006 7.434897 CGGGGTGAATTTTTGATATTACATGTG 59.565 37.037 9.11 0.00 0.00 3.21
2125 6007 7.340743 TCGGGGTGAATTTTTGATATTACATGT 59.659 33.333 2.69 2.69 0.00 3.21
2126 6008 7.711846 TCGGGGTGAATTTTTGATATTACATG 58.288 34.615 0.00 0.00 0.00 3.21
2127 6009 7.889873 TCGGGGTGAATTTTTGATATTACAT 57.110 32.000 0.00 0.00 0.00 2.29
2128 6010 7.889873 ATCGGGGTGAATTTTTGATATTACA 57.110 32.000 0.00 0.00 0.00 2.41
2129 6011 9.063615 ACTATCGGGGTGAATTTTTGATATTAC 57.936 33.333 0.00 0.00 0.00 1.89
2131 6013 9.635404 TTACTATCGGGGTGAATTTTTGATATT 57.365 29.630 0.00 0.00 0.00 1.28
2132 6014 9.635404 TTTACTATCGGGGTGAATTTTTGATAT 57.365 29.630 0.00 0.00 0.00 1.63
2133 6015 9.463902 TTTTACTATCGGGGTGAATTTTTGATA 57.536 29.630 0.00 0.00 0.00 2.15
2134 6016 7.948034 TTTACTATCGGGGTGAATTTTTGAT 57.052 32.000 0.00 0.00 0.00 2.57
2135 6017 7.762588 TTTTACTATCGGGGTGAATTTTTGA 57.237 32.000 0.00 0.00 0.00 2.69
2136 6018 8.085909 AGTTTTTACTATCGGGGTGAATTTTTG 58.914 33.333 0.00 0.00 0.00 2.44
2137 6019 8.185506 AGTTTTTACTATCGGGGTGAATTTTT 57.814 30.769 0.00 0.00 0.00 1.94
2138 6020 7.770366 AGTTTTTACTATCGGGGTGAATTTT 57.230 32.000 0.00 0.00 0.00 1.82
2139 6021 8.866970 TTAGTTTTTACTATCGGGGTGAATTT 57.133 30.769 0.00 0.00 0.00 1.82
2140 6022 8.866970 TTTAGTTTTTACTATCGGGGTGAATT 57.133 30.769 0.00 0.00 0.00 2.17
2141 6023 9.470399 AATTTAGTTTTTACTATCGGGGTGAAT 57.530 29.630 0.00 0.00 0.00 2.57
2142 6024 8.866970 AATTTAGTTTTTACTATCGGGGTGAA 57.133 30.769 0.00 0.00 0.00 3.18
2143 6025 9.382275 GTAATTTAGTTTTTACTATCGGGGTGA 57.618 33.333 0.00 0.00 0.00 4.02
2144 6026 8.615211 GGTAATTTAGTTTTTACTATCGGGGTG 58.385 37.037 0.00 0.00 0.00 4.61
2145 6027 7.495606 CGGTAATTTAGTTTTTACTATCGGGGT 59.504 37.037 0.00 0.00 0.00 4.95
2146 6028 7.518848 GCGGTAATTTAGTTTTTACTATCGGGG 60.519 40.741 0.00 0.00 0.00 5.73
2147 6029 7.347448 GCGGTAATTTAGTTTTTACTATCGGG 58.653 38.462 0.00 0.00 0.00 5.14
2148 6030 7.225341 AGGCGGTAATTTAGTTTTTACTATCGG 59.775 37.037 0.00 0.00 0.00 4.18
2149 6031 8.134905 AGGCGGTAATTTAGTTTTTACTATCG 57.865 34.615 0.00 0.00 0.00 2.92
2152 6034 9.586435 GTCTAGGCGGTAATTTAGTTTTTACTA 57.414 33.333 0.00 0.00 0.00 1.82
2153 6035 8.316946 AGTCTAGGCGGTAATTTAGTTTTTACT 58.683 33.333 0.00 0.00 0.00 2.24
2154 6036 8.385858 CAGTCTAGGCGGTAATTTAGTTTTTAC 58.614 37.037 0.00 0.00 0.00 2.01
2155 6037 7.064966 GCAGTCTAGGCGGTAATTTAGTTTTTA 59.935 37.037 0.00 0.00 0.00 1.52
2156 6038 6.128090 GCAGTCTAGGCGGTAATTTAGTTTTT 60.128 38.462 0.00 0.00 0.00 1.94
2157 6039 5.353400 GCAGTCTAGGCGGTAATTTAGTTTT 59.647 40.000 0.00 0.00 0.00 2.43
2158 6040 4.874396 GCAGTCTAGGCGGTAATTTAGTTT 59.126 41.667 0.00 0.00 0.00 2.66
2159 6041 4.439968 GCAGTCTAGGCGGTAATTTAGTT 58.560 43.478 0.00 0.00 0.00 2.24
2160 6042 4.056092 GCAGTCTAGGCGGTAATTTAGT 57.944 45.455 0.00 0.00 0.00 2.24
2167 6049 2.613660 TAGGCGCAGTCTAGGCGGTA 62.614 60.000 10.83 0.00 46.45 4.02
2169 6051 3.217017 TAGGCGCAGTCTAGGCGG 61.217 66.667 10.83 1.91 46.45 6.13
2174 6056 0.468214 AGCATCCTAGGCGCAGTCTA 60.468 55.000 21.02 0.00 46.45 2.59
2176 6058 0.389391 TAAGCATCCTAGGCGCAGTC 59.611 55.000 21.02 0.00 36.08 3.51
2177 6059 0.830648 TTAAGCATCCTAGGCGCAGT 59.169 50.000 21.02 12.74 36.08 4.40
2178 6060 1.506493 CTTAAGCATCCTAGGCGCAG 58.494 55.000 21.02 9.25 36.08 5.18
2179 6061 0.532862 GCTTAAGCATCCTAGGCGCA 60.533 55.000 22.59 0.00 41.59 6.09
2180 6062 2.239291 GCTTAAGCATCCTAGGCGC 58.761 57.895 22.59 13.57 41.59 6.53
2191 6073 0.380733 GGTTGCCCGTATGCTTAAGC 59.619 55.000 20.84 20.84 42.50 3.09
2192 6074 1.400494 GTGGTTGCCCGTATGCTTAAG 59.600 52.381 0.00 0.00 0.00 1.85
2193 6075 1.003812 AGTGGTTGCCCGTATGCTTAA 59.996 47.619 0.00 0.00 0.00 1.85
2194 6076 0.616371 AGTGGTTGCCCGTATGCTTA 59.384 50.000 0.00 0.00 0.00 3.09
2195 6077 0.251165 AAGTGGTTGCCCGTATGCTT 60.251 50.000 0.00 0.00 0.00 3.91
2196 6078 0.676782 GAAGTGGTTGCCCGTATGCT 60.677 55.000 0.00 0.00 0.00 3.79
2197 6079 0.958382 TGAAGTGGTTGCCCGTATGC 60.958 55.000 0.00 0.00 0.00 3.14
2198 6080 1.750193 ATGAAGTGGTTGCCCGTATG 58.250 50.000 0.00 0.00 0.00 2.39
2199 6081 2.365582 GAATGAAGTGGTTGCCCGTAT 58.634 47.619 0.00 0.00 0.00 3.06
2200 6082 1.816074 GAATGAAGTGGTTGCCCGTA 58.184 50.000 0.00 0.00 0.00 4.02
2201 6083 1.234615 CGAATGAAGTGGTTGCCCGT 61.235 55.000 0.00 0.00 0.00 5.28
2202 6084 1.501741 CGAATGAAGTGGTTGCCCG 59.498 57.895 0.00 0.00 0.00 6.13
2203 6085 1.212751 GCGAATGAAGTGGTTGCCC 59.787 57.895 0.00 0.00 0.00 5.36
2204 6086 0.387239 GTGCGAATGAAGTGGTTGCC 60.387 55.000 0.00 0.00 0.00 4.52
2205 6087 0.310543 TGTGCGAATGAAGTGGTTGC 59.689 50.000 0.00 0.00 0.00 4.17
2206 6088 1.069022 CCTGTGCGAATGAAGTGGTTG 60.069 52.381 0.00 0.00 0.00 3.77
2207 6089 1.238439 CCTGTGCGAATGAAGTGGTT 58.762 50.000 0.00 0.00 0.00 3.67
2208 6090 0.108585 ACCTGTGCGAATGAAGTGGT 59.891 50.000 0.00 0.00 0.00 4.16
2209 6091 0.518636 CACCTGTGCGAATGAAGTGG 59.481 55.000 0.00 0.00 0.00 4.00
2210 6092 1.511850 TCACCTGTGCGAATGAAGTG 58.488 50.000 0.00 0.00 0.00 3.16
2211 6093 2.289631 TGATCACCTGTGCGAATGAAGT 60.290 45.455 0.00 0.00 0.00 3.01
2212 6094 2.094894 GTGATCACCTGTGCGAATGAAG 59.905 50.000 15.31 0.00 0.00 3.02
2213 6095 2.076100 GTGATCACCTGTGCGAATGAA 58.924 47.619 15.31 0.00 0.00 2.57
2214 6096 1.001860 TGTGATCACCTGTGCGAATGA 59.998 47.619 22.85 0.00 0.00 2.57
2215 6097 1.129251 GTGTGATCACCTGTGCGAATG 59.871 52.381 22.85 0.00 38.51 2.67
2216 6098 1.270785 TGTGTGATCACCTGTGCGAAT 60.271 47.619 22.85 0.00 43.26 3.34
2217 6099 0.105778 TGTGTGATCACCTGTGCGAA 59.894 50.000 22.85 0.00 43.26 4.70
2218 6100 0.599991 GTGTGTGATCACCTGTGCGA 60.600 55.000 22.85 0.00 43.26 5.10
2219 6101 0.879839 TGTGTGTGATCACCTGTGCG 60.880 55.000 22.85 0.00 43.26 5.34
2220 6102 0.588252 GTGTGTGTGATCACCTGTGC 59.412 55.000 22.85 9.24 43.26 4.57
2221 6103 1.599071 GTGTGTGTGTGATCACCTGTG 59.401 52.381 22.85 0.00 43.26 3.66
2222 6104 1.475034 GGTGTGTGTGTGATCACCTGT 60.475 52.381 22.85 0.00 44.57 4.00
2223 6105 1.229428 GGTGTGTGTGTGATCACCTG 58.771 55.000 22.85 0.00 44.57 4.00
2224 6106 3.706055 GGTGTGTGTGTGATCACCT 57.294 52.632 22.85 0.00 44.57 4.00
2226 6108 2.069273 GCTAGGTGTGTGTGTGATCAC 58.931 52.381 19.27 19.27 44.08 3.06
2227 6109 1.691434 TGCTAGGTGTGTGTGTGATCA 59.309 47.619 0.00 0.00 0.00 2.92
2228 6110 2.455674 TGCTAGGTGTGTGTGTGATC 57.544 50.000 0.00 0.00 0.00 2.92
2229 6111 2.771089 CTTGCTAGGTGTGTGTGTGAT 58.229 47.619 0.00 0.00 0.00 3.06
2230 6112 1.810031 GCTTGCTAGGTGTGTGTGTGA 60.810 52.381 0.00 0.00 0.00 3.58
2231 6113 0.588252 GCTTGCTAGGTGTGTGTGTG 59.412 55.000 0.00 0.00 0.00 3.82
2232 6114 0.180171 TGCTTGCTAGGTGTGTGTGT 59.820 50.000 0.00 0.00 0.00 3.72
2233 6115 1.002468 GTTGCTTGCTAGGTGTGTGTG 60.002 52.381 0.00 0.00 0.00 3.82
2234 6116 1.308998 GTTGCTTGCTAGGTGTGTGT 58.691 50.000 0.00 0.00 0.00 3.72
2235 6117 1.002468 GTGTTGCTTGCTAGGTGTGTG 60.002 52.381 0.00 0.00 0.00 3.82
2236 6118 1.308998 GTGTTGCTTGCTAGGTGTGT 58.691 50.000 0.00 0.00 0.00 3.72
2237 6119 0.593128 GGTGTTGCTTGCTAGGTGTG 59.407 55.000 0.00 0.00 0.00 3.82
2238 6120 0.537371 GGGTGTTGCTTGCTAGGTGT 60.537 55.000 0.00 0.00 0.00 4.16
2239 6121 1.577328 CGGGTGTTGCTTGCTAGGTG 61.577 60.000 0.00 0.00 0.00 4.00
2240 6122 1.302511 CGGGTGTTGCTTGCTAGGT 60.303 57.895 0.00 0.00 0.00 3.08
2241 6123 1.003839 TCGGGTGTTGCTTGCTAGG 60.004 57.895 0.00 0.00 0.00 3.02
2242 6124 1.021390 CCTCGGGTGTTGCTTGCTAG 61.021 60.000 0.00 0.00 0.00 3.42
2243 6125 1.003839 CCTCGGGTGTTGCTTGCTA 60.004 57.895 0.00 0.00 0.00 3.49
2244 6126 2.281761 CCTCGGGTGTTGCTTGCT 60.282 61.111 0.00 0.00 0.00 3.91
2245 6127 2.281484 TCCTCGGGTGTTGCTTGC 60.281 61.111 0.00 0.00 0.00 4.01
2246 6128 0.671781 CTCTCCTCGGGTGTTGCTTG 60.672 60.000 0.00 0.00 0.00 4.01
2247 6129 1.674057 CTCTCCTCGGGTGTTGCTT 59.326 57.895 0.00 0.00 0.00 3.91
2248 6130 2.286523 CCTCTCCTCGGGTGTTGCT 61.287 63.158 0.00 0.00 0.00 3.91
2249 6131 2.266055 CCTCTCCTCGGGTGTTGC 59.734 66.667 0.00 0.00 0.00 4.17
2250 6132 1.608717 CTCCCTCTCCTCGGGTGTTG 61.609 65.000 0.00 0.00 42.56 3.33
2251 6133 1.305381 CTCCCTCTCCTCGGGTGTT 60.305 63.158 0.00 0.00 42.56 3.32
2252 6134 2.360980 CTCCCTCTCCTCGGGTGT 59.639 66.667 0.00 0.00 42.56 4.16
2253 6135 3.151022 GCTCCCTCTCCTCGGGTG 61.151 72.222 0.00 0.00 42.56 4.61
2254 6136 3.670629 CTGCTCCCTCTCCTCGGGT 62.671 68.421 0.00 0.00 42.56 5.28
2255 6137 2.837291 CTGCTCCCTCTCCTCGGG 60.837 72.222 0.00 0.00 43.38 5.14
2256 6138 3.535962 GCTGCTCCCTCTCCTCGG 61.536 72.222 0.00 0.00 0.00 4.63
2257 6139 2.632602 TAGGCTGCTCCCTCTCCTCG 62.633 65.000 0.00 0.00 36.41 4.63
2258 6140 0.397816 TTAGGCTGCTCCCTCTCCTC 60.398 60.000 0.00 0.00 36.41 3.71
2259 6141 0.398381 CTTAGGCTGCTCCCTCTCCT 60.398 60.000 0.00 0.00 36.41 3.69
2260 6142 2.038814 GCTTAGGCTGCTCCCTCTCC 62.039 65.000 0.00 0.00 36.41 3.71
2261 6143 1.445518 GCTTAGGCTGCTCCCTCTC 59.554 63.158 0.00 0.00 36.41 3.20
2262 6144 2.069430 GGCTTAGGCTGCTCCCTCT 61.069 63.158 0.00 0.00 36.41 3.69
2263 6145 1.631071 AAGGCTTAGGCTGCTCCCTC 61.631 60.000 9.59 0.00 38.81 4.30
2264 6146 1.617839 AAGGCTTAGGCTGCTCCCT 60.618 57.895 9.59 1.43 38.81 4.20
2265 6147 1.452833 CAAGGCTTAGGCTGCTCCC 60.453 63.158 9.59 0.00 38.81 4.30
2266 6148 1.452833 CCAAGGCTTAGGCTGCTCC 60.453 63.158 9.59 0.00 38.81 4.70
2267 6149 4.232310 CCAAGGCTTAGGCTGCTC 57.768 61.111 9.59 0.00 38.81 4.26
2273 6155 1.077429 GGTCTGGCCAAGGCTTAGG 60.077 63.158 7.01 5.38 41.60 2.69
2274 6156 0.107459 GAGGTCTGGCCAAGGCTTAG 60.107 60.000 7.01 9.88 41.60 2.18
2275 6157 1.562672 GGAGGTCTGGCCAAGGCTTA 61.563 60.000 7.01 0.00 41.60 3.09
2276 6158 2.759795 GAGGTCTGGCCAAGGCTT 59.240 61.111 7.01 0.00 41.60 4.35
2277 6159 3.334054 GGAGGTCTGGCCAAGGCT 61.334 66.667 7.01 0.00 41.60 4.58
2278 6160 2.828480 GAAGGAGGTCTGGCCAAGGC 62.828 65.000 7.01 1.52 40.61 4.35
2279 6161 1.204113 AGAAGGAGGTCTGGCCAAGG 61.204 60.000 7.01 0.00 40.61 3.61
2280 6162 0.695347 AAGAAGGAGGTCTGGCCAAG 59.305 55.000 7.01 0.66 40.61 3.61
2281 6163 0.693049 GAAGAAGGAGGTCTGGCCAA 59.307 55.000 7.01 0.00 40.61 4.52
2282 6164 1.201429 GGAAGAAGGAGGTCTGGCCA 61.201 60.000 4.71 4.71 40.61 5.36
2283 6165 0.912006 AGGAAGAAGGAGGTCTGGCC 60.912 60.000 0.00 0.00 37.58 5.36
2284 6166 0.988063 AAGGAAGAAGGAGGTCTGGC 59.012 55.000 0.00 0.00 0.00 4.85
2285 6167 2.260822 TGAAGGAAGAAGGAGGTCTGG 58.739 52.381 0.00 0.00 0.00 3.86
2286 6168 4.467795 TGTATGAAGGAAGAAGGAGGTCTG 59.532 45.833 0.00 0.00 0.00 3.51
2287 6169 4.689062 TGTATGAAGGAAGAAGGAGGTCT 58.311 43.478 0.00 0.00 0.00 3.85
2288 6170 4.682050 GCTGTATGAAGGAAGAAGGAGGTC 60.682 50.000 0.00 0.00 0.00 3.85
2289 6171 3.198853 GCTGTATGAAGGAAGAAGGAGGT 59.801 47.826 0.00 0.00 0.00 3.85
2290 6172 3.454082 AGCTGTATGAAGGAAGAAGGAGG 59.546 47.826 0.00 0.00 0.00 4.30
2291 6173 4.405358 AGAGCTGTATGAAGGAAGAAGGAG 59.595 45.833 0.00 0.00 0.00 3.69
2292 6174 4.357325 AGAGCTGTATGAAGGAAGAAGGA 58.643 43.478 0.00 0.00 0.00 3.36
2293 6175 4.751767 AGAGCTGTATGAAGGAAGAAGG 57.248 45.455 0.00 0.00 0.00 3.46
2294 6176 5.596361 TCCTAGAGCTGTATGAAGGAAGAAG 59.404 44.000 0.00 0.00 30.34 2.85
2295 6177 5.519808 TCCTAGAGCTGTATGAAGGAAGAA 58.480 41.667 0.00 0.00 30.34 2.52
2296 6178 5.130705 TCCTAGAGCTGTATGAAGGAAGA 57.869 43.478 0.00 0.00 30.34 2.87
2297 6179 5.452078 CTCCTAGAGCTGTATGAAGGAAG 57.548 47.826 0.00 0.00 32.94 3.46
2311 6193 0.459934 GCACACAGCTGCTCCTAGAG 60.460 60.000 15.27 0.00 41.15 2.43
2312 6194 1.593787 GCACACAGCTGCTCCTAGA 59.406 57.895 15.27 0.00 41.15 2.43
2313 6195 4.198625 GCACACAGCTGCTCCTAG 57.801 61.111 15.27 0.00 41.15 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.