Multiple sequence alignment - TraesCS7A01G479800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G479800 chr7A 100.000 6171 0 0 1 6171 672024160 672030330 0.000000e+00 11396.0
1 TraesCS7A01G479800 chr7A 89.116 147 6 2 1 140 555661967 555661824 2.290000e-39 174.0
2 TraesCS7A01G479800 chr7A 74.528 424 93 10 260 670 662190 662611 2.960000e-38 171.0
3 TraesCS7A01G479800 chr7D 92.629 2225 108 27 916 3107 580496899 580499100 0.000000e+00 3149.0
4 TraesCS7A01G479800 chr7D 95.806 1526 50 12 3549 5067 580499730 580501248 0.000000e+00 2451.0
5 TraesCS7A01G479800 chr7D 87.888 644 48 3 150 763 580494974 580495617 0.000000e+00 730.0
6 TraesCS7A01G479800 chr7D 88.022 551 30 16 5073 5619 580501310 580501828 2.440000e-173 619.0
7 TraesCS7A01G479800 chr7D 92.925 424 23 4 3101 3521 580499310 580499729 1.470000e-170 610.0
8 TraesCS7A01G479800 chr7D 85.954 477 25 13 5646 6121 580501820 580502255 7.240000e-129 472.0
9 TraesCS7A01G479800 chr7D 73.978 538 110 16 141 653 580179928 580179396 2.270000e-44 191.0
10 TraesCS7A01G479800 chr7D 86.207 145 12 3 1 140 137567881 137568022 3.850000e-32 150.0
11 TraesCS7A01G479800 chr7D 86.301 146 11 3 1 140 217794063 217793921 3.850000e-32 150.0
12 TraesCS7A01G479800 chr7B 90.654 2386 146 32 774 3107 647756893 647759253 0.000000e+00 3099.0
13 TraesCS7A01G479800 chr7B 94.096 1372 63 14 3663 5027 647760522 647761882 0.000000e+00 2069.0
14 TraesCS7A01G479800 chr7B 91.045 536 48 0 138 673 647755894 647756429 0.000000e+00 725.0
15 TraesCS7A01G479800 chr7B 90.633 395 32 5 5073 5466 647761964 647762354 2.550000e-143 520.0
16 TraesCS7A01G479800 chr7B 87.032 347 16 2 5774 6120 647786451 647786768 1.260000e-96 364.0
17 TraesCS7A01G479800 chr7B 79.255 376 64 10 319 682 535776780 535777153 3.690000e-62 250.0
18 TraesCS7A01G479800 chr6A 90.256 195 11 5 5935 6121 77509071 77508877 1.330000e-61 248.0
19 TraesCS7A01G479800 chr6A 88.205 195 15 5 5935 6121 22034319 22034513 6.220000e-55 226.0
20 TraesCS7A01G479800 chr5A 90.256 195 11 5 5935 6121 456471633 456471827 1.330000e-61 248.0
21 TraesCS7A01G479800 chr5A 80.342 351 32 16 5768 6118 52325895 52326208 1.340000e-56 231.0
22 TraesCS7A01G479800 chr3A 89.744 195 12 5 5935 6121 20205780 20205586 6.180000e-60 243.0
23 TraesCS7A01G479800 chr4B 76.629 445 85 15 252 682 129008667 129009106 1.730000e-55 228.0
24 TraesCS7A01G479800 chr6B 77.839 361 66 9 318 666 51235683 51235325 1.740000e-50 211.0
25 TraesCS7A01G479800 chr1B 74.165 569 114 20 141 682 567421529 567422091 8.110000e-49 206.0
26 TraesCS7A01G479800 chr5D 80.000 300 40 13 5460 5743 62242768 62243063 2.920000e-48 204.0
27 TraesCS7A01G479800 chr5D 94.286 70 4 0 6049 6118 62291827 62291896 2.350000e-19 108.0
28 TraesCS7A01G479800 chr5B 74.354 542 103 23 170 682 315903830 315904364 1.360000e-46 198.0
29 TraesCS7A01G479800 chr5B 87.586 145 10 2 1 140 559994958 559995099 1.780000e-35 161.0
30 TraesCS7A01G479800 chr6D 75.000 436 93 14 260 682 290232807 290232375 2.940000e-43 187.0
31 TraesCS7A01G479800 chr6D 89.362 141 11 4 1 140 419422615 419422752 2.290000e-39 174.0
32 TraesCS7A01G479800 chr6D 86.207 145 12 4 1 140 109824744 109824885 3.850000e-32 150.0
33 TraesCS7A01G479800 chr2B 88.194 144 10 5 1 140 543381173 543381033 1.380000e-36 165.0
34 TraesCS7A01G479800 chr2B 87.671 146 9 2 1 140 772372493 772372351 1.780000e-35 161.0
35 TraesCS7A01G479800 chr2B 86.301 146 11 3 1 140 12023247 12023105 3.850000e-32 150.0
36 TraesCS7A01G479800 chr3B 100.000 28 0 0 1580 1607 12842179 12842152 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G479800 chr7A 672024160 672030330 6170 False 11396.00 11396 100.000000 1 6171 1 chr7A.!!$F2 6170
1 TraesCS7A01G479800 chr7D 580494974 580502255 7281 False 1338.50 3149 90.537333 150 6121 6 chr7D.!!$F2 5971
2 TraesCS7A01G479800 chr7B 647755894 647762354 6460 False 1603.25 3099 91.607000 138 5466 4 chr7B.!!$F3 5328
3 TraesCS7A01G479800 chr1B 567421529 567422091 562 False 206.00 206 74.165000 141 682 1 chr1B.!!$F1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
310 323 0.039437 GCGTTCACTCAGGTCTTCGA 60.039 55.0 0.00 0.00 0.00 3.71 F
800 2060 0.180406 CGGGGCCCCATATATGTAGC 59.820 60.0 40.06 9.02 35.37 3.58 F
1786 3095 0.101399 CGACGCTCAGGATGTAGCTT 59.899 55.0 0.00 0.00 37.20 3.74 F
2439 3750 0.403271 ATGGCTTCAACACTGCTCCT 59.597 50.0 0.00 0.00 0.00 3.69 F
3846 5943 0.036577 CACAAGGAGGTCAGAGCTGG 60.037 60.0 6.92 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1711 3008 0.175073 GGATTAACGACCGGAGCAGT 59.825 55.000 9.46 0.0 0.00 4.40 R
2598 3909 0.830648 CCTTCACCGCTGGAGGATAA 59.169 55.000 0.00 0.0 45.68 1.75 R
3566 5587 1.473434 GCTCCAATGAAGGGTAGGACG 60.473 57.143 0.00 0.0 0.00 4.79 R
4113 6211 0.034670 GATGCCCTCCTTGCAAGTCT 60.035 55.000 24.35 1.5 42.92 3.24 R
5466 7625 0.319900 CCTCTCCCGACGCATATTGG 60.320 60.000 0.00 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 9.511272 ACTACAATATACGGATGTATGTAGACA 57.489 33.333 24.44 0.00 40.69 3.41
58 59 7.997773 ATACGGATGTATGTAGACATAGTGT 57.002 36.000 2.56 1.48 40.18 3.55
60 61 7.436430 ACGGATGTATGTAGACATAGTGTAG 57.564 40.000 2.56 0.00 40.18 2.74
61 62 7.222161 ACGGATGTATGTAGACATAGTGTAGA 58.778 38.462 2.56 0.00 40.18 2.59
62 63 7.883833 ACGGATGTATGTAGACATAGTGTAGAT 59.116 37.037 2.56 0.00 40.18 1.98
63 64 8.731605 CGGATGTATGTAGACATAGTGTAGATT 58.268 37.037 2.56 0.00 40.18 2.40
69 70 8.753497 ATGTAGACATAGTGTAGATTCACTCA 57.247 34.615 2.59 0.00 45.79 3.41
70 71 8.753497 TGTAGACATAGTGTAGATTCACTCAT 57.247 34.615 2.59 0.00 45.79 2.90
71 72 9.190317 TGTAGACATAGTGTAGATTCACTCATT 57.810 33.333 2.59 0.00 45.79 2.57
74 75 9.376075 AGACATAGTGTAGATTCACTCATTTTG 57.624 33.333 2.59 0.00 45.79 2.44
75 76 7.978982 ACATAGTGTAGATTCACTCATTTTGC 58.021 34.615 2.59 0.00 45.79 3.68
76 77 7.826252 ACATAGTGTAGATTCACTCATTTTGCT 59.174 33.333 2.59 0.00 45.79 3.91
77 78 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
78 79 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
79 80 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
80 81 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
81 82 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
82 83 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
83 84 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
84 85 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
85 86 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
86 87 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
87 88 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
88 89 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
89 90 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
90 91 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
91 92 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
92 93 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
93 94 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
94 95 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
95 96 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
96 97 4.460034 TGCTCCGTATGTAGTCACTTGTTA 59.540 41.667 0.00 0.00 0.00 2.41
97 98 5.035443 GCTCCGTATGTAGTCACTTGTTAG 58.965 45.833 0.00 0.00 0.00 2.34
98 99 5.163683 GCTCCGTATGTAGTCACTTGTTAGA 60.164 44.000 0.00 0.00 0.00 2.10
99 100 6.624423 GCTCCGTATGTAGTCACTTGTTAGAA 60.624 42.308 0.00 0.00 0.00 2.10
100 101 7.400599 TCCGTATGTAGTCACTTGTTAGAAT 57.599 36.000 0.00 0.00 0.00 2.40
101 102 7.478322 TCCGTATGTAGTCACTTGTTAGAATC 58.522 38.462 0.00 0.00 0.00 2.52
102 103 7.338703 TCCGTATGTAGTCACTTGTTAGAATCT 59.661 37.037 0.00 0.00 0.00 2.40
103 104 7.644551 CCGTATGTAGTCACTTGTTAGAATCTC 59.355 40.741 0.00 0.00 0.00 2.75
104 105 8.399425 CGTATGTAGTCACTTGTTAGAATCTCT 58.601 37.037 0.00 0.00 0.00 3.10
133 134 9.892130 AAAGACTTATACTATTTGGGAACAGAG 57.108 33.333 0.00 0.00 44.54 3.35
134 135 8.024145 AGACTTATACTATTTGGGAACAGAGG 57.976 38.462 0.00 0.00 44.54 3.69
135 136 7.071321 AGACTTATACTATTTGGGAACAGAGGG 59.929 40.741 0.00 0.00 44.54 4.30
136 137 6.906901 ACTTATACTATTTGGGAACAGAGGGA 59.093 38.462 0.00 0.00 44.54 4.20
208 209 4.458989 GCAAAGAGATGATACAACCAACCA 59.541 41.667 0.00 0.00 0.00 3.67
288 301 8.795513 TCATTGCTTGAAAAAGAATCATAGACA 58.204 29.630 0.00 0.00 0.00 3.41
301 314 2.560981 TCATAGACAAGGCGTTCACTCA 59.439 45.455 0.00 0.00 0.00 3.41
310 323 0.039437 GCGTTCACTCAGGTCTTCGA 60.039 55.000 0.00 0.00 0.00 3.71
315 328 4.058817 GTTCACTCAGGTCTTCGAATTGT 58.941 43.478 0.00 0.00 0.00 2.71
410 423 6.096001 AGGAGTGGTGAAAATAAGAATGATGC 59.904 38.462 0.00 0.00 0.00 3.91
486 510 6.025280 GCAATTAAGCCAAATCTTTGCATTG 58.975 36.000 0.00 0.00 36.86 2.82
513 537 4.305989 TCAAGATCTTTGGTTTGCACAC 57.694 40.909 4.86 0.00 0.00 3.82
654 679 0.988832 AAGGGGCGTTACCAGATCAA 59.011 50.000 0.00 0.00 42.05 2.57
764 834 9.759473 AAAAAGGCAATGGCTGATATATATACT 57.241 29.630 10.89 0.00 38.81 2.12
785 2045 2.556840 ATCACAATCAGCACCCGGGG 62.557 60.000 27.92 12.73 0.00 5.73
796 2056 1.928567 ACCCGGGGCCCCATATATG 60.929 63.158 40.06 22.41 35.37 1.78
800 2060 0.180406 CGGGGCCCCATATATGTAGC 59.820 60.000 40.06 9.02 35.37 3.58
811 2071 2.028125 ATATGTAGCCACGCACGCCT 62.028 55.000 0.00 0.00 0.00 5.52
827 2092 1.737793 CGCCTACACTTTCCCATCAAC 59.262 52.381 0.00 0.00 0.00 3.18
830 2095 1.393539 CTACACTTTCCCATCAACGCG 59.606 52.381 3.53 3.53 0.00 6.01
1065 2353 1.215647 CGCGAAGAAGGTGGCTAGT 59.784 57.895 0.00 0.00 0.00 2.57
1180 2468 4.150454 AGGCGGAGGAGGAGAGGG 62.150 72.222 0.00 0.00 0.00 4.30
1294 2582 1.076632 GAGAGGAAGCGGGAGGAGA 60.077 63.158 0.00 0.00 0.00 3.71
1374 2662 2.034687 GGTGCTGCTGGTGTGGAT 59.965 61.111 0.00 0.00 0.00 3.41
1454 2745 3.056250 ACTGTCGAATCTGAAGCTGATGT 60.056 43.478 0.00 0.00 0.00 3.06
1463 2754 1.198713 GAAGCTGATGTGGGAGGAGA 58.801 55.000 0.00 0.00 0.00 3.71
1477 2768 4.200283 GAGACCAGGGCTCGAGCG 62.200 72.222 29.81 18.76 43.26 5.03
1570 2861 3.845992 TGGATCATTGGAAGAGGACAGAA 59.154 43.478 0.00 0.00 0.00 3.02
1581 2872 0.687354 AGGACAGAACAGCAATCGGT 59.313 50.000 0.00 0.00 0.00 4.69
1596 2893 4.142881 GCAATCGGTGATGATGATGATGAG 60.143 45.833 0.00 0.00 0.00 2.90
1599 2896 3.257624 TCGGTGATGATGATGATGAGGAG 59.742 47.826 0.00 0.00 0.00 3.69
1626 2923 1.813477 GCTTGGGATAGCAAGAGCCTC 60.813 57.143 0.00 0.00 43.56 4.70
1668 2965 1.817357 CTGCTGGCAATTCTCACTCA 58.183 50.000 0.00 0.00 0.00 3.41
1673 2970 2.943690 CTGGCAATTCTCACTCATCTGG 59.056 50.000 0.00 0.00 0.00 3.86
1686 2983 5.483231 TCACTCATCTGGTTCTGAAGAAGAT 59.517 40.000 8.31 8.31 33.93 2.40
1688 2985 7.344093 TCACTCATCTGGTTCTGAAGAAGATAT 59.656 37.037 12.12 2.68 33.93 1.63
1729 3035 1.278238 CACTGCTCCGGTCGTTAATC 58.722 55.000 0.00 0.00 0.00 1.75
1733 3039 0.458669 GCTCCGGTCGTTAATCCAGA 59.541 55.000 0.00 0.00 0.00 3.86
1739 3045 2.030457 CGGTCGTTAATCCAGACAATGC 59.970 50.000 0.00 0.00 36.68 3.56
1740 3046 3.006940 GGTCGTTAATCCAGACAATGCA 58.993 45.455 0.00 0.00 36.68 3.96
1742 3048 3.684788 GTCGTTAATCCAGACAATGCAGT 59.315 43.478 0.00 0.00 35.19 4.40
1786 3095 0.101399 CGACGCTCAGGATGTAGCTT 59.899 55.000 0.00 0.00 37.20 3.74
1787 3096 1.846541 GACGCTCAGGATGTAGCTTC 58.153 55.000 0.00 0.00 37.20 3.86
1788 3097 1.135139 GACGCTCAGGATGTAGCTTCA 59.865 52.381 0.00 0.00 37.42 3.02
2049 3358 2.742053 TGAGTCCTTCAGTAAAATGCGC 59.258 45.455 0.00 0.00 0.00 6.09
2074 3383 2.168521 AGGGGATTGAGTATGTGTGACG 59.831 50.000 0.00 0.00 0.00 4.35
2133 3442 2.777832 AGCAGACAGTTGAATCCCTC 57.222 50.000 0.00 0.00 0.00 4.30
2229 3538 5.221048 GGAATGTACCAATGCACCAATAGTC 60.221 44.000 0.00 0.00 0.00 2.59
2300 3609 6.506413 TGGAGGTTAACTAAGGTATTTTCCCT 59.494 38.462 5.42 0.00 0.00 4.20
2301 3610 7.018851 TGGAGGTTAACTAAGGTATTTTCCCTT 59.981 37.037 5.42 0.00 44.43 3.95
2306 3615 8.509690 GTTAACTAAGGTATTTTCCCTTGTGAC 58.490 37.037 0.00 0.00 42.28 3.67
2318 3627 1.195448 CCTTGTGACGTTCTGTGCATC 59.805 52.381 0.00 0.00 0.00 3.91
2327 3636 2.549754 CGTTCTGTGCATCTCTTTGGTT 59.450 45.455 0.00 0.00 0.00 3.67
2347 3658 4.032786 GGTTATGCCGAATTTGCATTGAAC 59.967 41.667 18.01 16.20 46.91 3.18
2353 3664 4.414852 CCGAATTTGCATTGAACTACAGG 58.585 43.478 0.00 0.00 0.00 4.00
2409 3720 7.633193 TGTTTGTAAACAGGTTGTAACAGAT 57.367 32.000 6.11 0.00 43.45 2.90
2436 3747 2.036346 GGAAAATGGCTTCAACACTGCT 59.964 45.455 0.00 0.00 0.00 4.24
2439 3750 0.403271 ATGGCTTCAACACTGCTCCT 59.597 50.000 0.00 0.00 0.00 3.69
2451 3762 6.426937 TCAACACTGCTCCTTACTATGAAAAC 59.573 38.462 0.00 0.00 0.00 2.43
2493 3804 3.650950 ATTGCCCCGACCAGTGCT 61.651 61.111 0.00 0.00 0.00 4.40
2507 3818 2.016318 CAGTGCTGAAAGGTGTGACAA 58.984 47.619 0.00 0.00 0.00 3.18
2509 3820 2.017049 GTGCTGAAAGGTGTGACAACT 58.983 47.619 0.00 0.00 29.81 3.16
2510 3821 3.118408 AGTGCTGAAAGGTGTGACAACTA 60.118 43.478 2.38 0.00 27.88 2.24
2511 3822 3.248602 GTGCTGAAAGGTGTGACAACTAG 59.751 47.826 2.38 0.00 27.88 2.57
2512 3823 2.224314 GCTGAAAGGTGTGACAACTAGC 59.776 50.000 2.38 5.77 27.88 3.42
2513 3824 3.466836 CTGAAAGGTGTGACAACTAGCA 58.533 45.455 2.38 4.31 27.88 3.49
2514 3825 3.202906 TGAAAGGTGTGACAACTAGCAC 58.797 45.455 2.38 0.00 27.88 4.40
2515 3826 3.202906 GAAAGGTGTGACAACTAGCACA 58.797 45.455 2.38 0.00 42.25 4.57
2555 3866 9.181805 GCTTATGTTTTAAGTTTCAGTTTCTCC 57.818 33.333 0.00 0.00 0.00 3.71
2569 3880 7.615582 TCAGTTTCTCCTATGTTATTTGCAG 57.384 36.000 0.00 0.00 0.00 4.41
2586 3897 4.935352 TGCAGTTTTAGCCTTTGACAAT 57.065 36.364 0.00 0.00 0.00 2.71
2621 3932 1.669115 CTCCAGCGGTGAAGGTGTG 60.669 63.158 17.83 0.00 37.88 3.82
2703 4014 5.563085 GCCTATGACGATACAGTAGAGGTTG 60.563 48.000 0.00 0.00 0.00 3.77
2725 4036 8.460428 GGTTGGTTCGTTAAACATTAATCCATA 58.540 33.333 0.00 0.00 39.81 2.74
2946 4269 2.945447 TTGCATGCTACCTTGAATGC 57.055 45.000 20.33 0.81 44.49 3.56
2981 4304 9.151471 CGATTTCATCTCTGACTTTAACCTTTA 57.849 33.333 0.00 0.00 0.00 1.85
3164 4916 8.514136 ACGACACAAATTTTAACACATATTGG 57.486 30.769 0.00 0.00 0.00 3.16
3168 4920 8.719648 ACACAAATTTTAACACATATTGGCATG 58.280 29.630 0.00 0.00 0.00 4.06
3271 5289 7.732222 TGGCCTATTTTTGAAGAACCATATT 57.268 32.000 3.32 0.00 0.00 1.28
3288 5306 4.142816 CCATATTTCTTTCGATCGGATGGC 60.143 45.833 16.41 0.00 0.00 4.40
3336 5354 2.240160 TGTTAAGTTCCCCACCGCATAT 59.760 45.455 0.00 0.00 0.00 1.78
3337 5355 3.455177 TGTTAAGTTCCCCACCGCATATA 59.545 43.478 0.00 0.00 0.00 0.86
3392 5413 2.507484 TCAATTGCTTCTGACCACCAG 58.493 47.619 0.00 0.00 44.27 4.00
3438 5459 8.099364 TCACAATTGGTCTCTTTAATGTTCTC 57.901 34.615 10.83 0.00 0.00 2.87
3468 5489 5.182760 AGAAATCCAAGATTTCTGTGCAGTC 59.817 40.000 24.58 2.79 44.11 3.51
3482 5503 0.593128 GCAGTCGCACCATTTTCAGT 59.407 50.000 0.00 0.00 38.36 3.41
3500 5521 4.641396 TCAGTAGTTGAATTGGTCTGTGG 58.359 43.478 0.00 0.00 31.34 4.17
3526 5547 6.692849 TCCTGCTGAGACCATAAATATCAT 57.307 37.500 0.00 0.00 0.00 2.45
3527 5548 7.797121 TCCTGCTGAGACCATAAATATCATA 57.203 36.000 0.00 0.00 0.00 2.15
3529 5550 9.492730 TCCTGCTGAGACCATAAATATCATATA 57.507 33.333 0.00 0.00 0.00 0.86
3566 5587 6.220930 TGACTTGTCCAGAACACTGTTATAC 58.779 40.000 0.00 0.00 37.70 1.47
3699 5792 4.948341 TGAAGCCTGTGTACTCTGTTTA 57.052 40.909 0.00 0.00 0.00 2.01
3720 5813 8.361139 TGTTTAAGGTTTTGAGTTTTTGACTGA 58.639 29.630 0.00 0.00 39.19 3.41
3738 5835 6.519382 TGACTGAGATATGGCAACTCAATAG 58.481 40.000 17.92 11.83 39.60 1.73
3765 5862 7.050377 AGAATTTCTGAGACTGAGTTCACAAA 58.950 34.615 0.00 0.00 0.00 2.83
3773 5870 6.315144 TGAGACTGAGTTCACAAAAATTTCGA 59.685 34.615 0.00 0.00 0.00 3.71
3806 5903 8.682936 ACCTAATGTATCATCATTTCTGTTCC 57.317 34.615 0.00 0.00 38.68 3.62
3846 5943 0.036577 CACAAGGAGGTCAGAGCTGG 60.037 60.000 6.92 0.00 0.00 4.85
3906 6003 2.544277 CCATTGCCATGCCTTATGAACG 60.544 50.000 0.00 0.00 39.21 3.95
3907 6004 1.832883 TTGCCATGCCTTATGAACGT 58.167 45.000 0.00 0.00 39.21 3.99
3916 6013 2.031683 GCCTTATGAACGTTGGAATCCG 59.968 50.000 5.00 0.00 0.00 4.18
3925 6022 2.683867 ACGTTGGAATCCGTTGTCAAAA 59.316 40.909 0.00 0.00 32.50 2.44
4061 6158 5.942236 GCAAGAGATTGATATGGCCATTAGA 59.058 40.000 26.37 6.29 0.00 2.10
4234 6332 1.944430 GCTTGGAACTTAGGACCCGTG 60.944 57.143 0.00 0.00 0.00 4.94
4291 6389 3.262420 GAAGCGGAAAGAAGAGTATGCA 58.738 45.455 0.00 0.00 0.00 3.96
4622 6720 6.750501 CGAAATGATTTGATCTTGTTGCTGAT 59.249 34.615 0.00 0.00 0.00 2.90
4634 6732 7.977789 TCTTGTTGCTGATGTTAGTAATTGA 57.022 32.000 0.00 0.00 0.00 2.57
4649 6747 9.813080 GTTAGTAATTGATTTCTTGACTGTGTC 57.187 33.333 0.00 0.00 0.00 3.67
4802 6900 3.560453 GGAGTTGTGGCCATAAAGGTACA 60.560 47.826 17.37 0.00 40.61 2.90
4805 6903 2.374184 TGTGGCCATAAAGGTACATGC 58.626 47.619 9.72 0.00 40.61 4.06
4809 6907 3.458118 TGGCCATAAAGGTACATGCTAGT 59.542 43.478 0.00 0.00 40.61 2.57
4827 6925 6.700352 TGCTAGTGCATACATAAGCATGATA 58.300 36.000 0.00 0.00 45.31 2.15
4828 6926 7.333323 TGCTAGTGCATACATAAGCATGATAT 58.667 34.615 0.00 0.00 45.31 1.63
4839 6937 8.158169 ACATAAGCATGATATTGTAGTTGTGG 57.842 34.615 0.00 0.00 35.96 4.17
4849 6947 3.090952 TGTAGTTGTGGCAATTGCAAC 57.909 42.857 27.90 27.90 45.10 4.17
4939 7037 0.756903 AATCCCGGTCTTATGGACGG 59.243 55.000 0.00 0.00 45.35 4.79
4996 7094 1.882623 TCGAGGAGATCCATCGATGTG 59.117 52.381 23.27 14.77 39.19 3.21
5020 7118 4.394729 TCAAAGAGTGCTTTCGGGTAAAT 58.605 39.130 0.00 0.00 42.27 1.40
5027 7125 1.257155 GCTTTCGGGTAAATACGCTCG 59.743 52.381 6.15 1.09 37.04 5.03
5029 7127 0.866906 TTCGGGTAAATACGCTCGCG 60.867 55.000 10.06 10.06 46.03 5.87
5032 7130 1.494824 GGGTAAATACGCTCGCGATT 58.505 50.000 18.98 1.74 42.83 3.34
5036 7134 1.865865 AAATACGCTCGCGATTCCAT 58.134 45.000 18.98 0.00 42.83 3.41
5037 7135 2.717580 AATACGCTCGCGATTCCATA 57.282 45.000 18.98 0.00 42.83 2.74
5038 7136 2.264109 ATACGCTCGCGATTCCATAG 57.736 50.000 18.98 0.00 42.83 2.23
5040 7138 0.102481 ACGCTCGCGATTCCATAGTT 59.898 50.000 18.98 0.00 42.83 2.24
5041 7139 0.778815 CGCTCGCGATTCCATAGTTC 59.221 55.000 10.36 0.00 42.83 3.01
5042 7140 1.852942 GCTCGCGATTCCATAGTTCA 58.147 50.000 10.36 0.00 0.00 3.18
5044 7142 2.802816 GCTCGCGATTCCATAGTTCATT 59.197 45.455 10.36 0.00 0.00 2.57
5045 7143 3.248602 GCTCGCGATTCCATAGTTCATTT 59.751 43.478 10.36 0.00 0.00 2.32
5046 7144 4.447724 GCTCGCGATTCCATAGTTCATTTA 59.552 41.667 10.36 0.00 0.00 1.40
5051 7154 7.654116 TCGCGATTCCATAGTTCATTTAACATA 59.346 33.333 3.71 0.00 40.83 2.29
5053 7156 8.230486 GCGATTCCATAGTTCATTTAACATAGG 58.770 37.037 0.00 0.00 40.83 2.57
5060 7163 9.071276 CATAGTTCATTTAACATAGGGCAATCT 57.929 33.333 0.00 0.00 40.83 2.40
5067 7170 9.313118 CATTTAACATAGGGCAATCTTTTAACC 57.687 33.333 0.00 0.00 0.00 2.85
5068 7171 5.932619 AACATAGGGCAATCTTTTAACCC 57.067 39.130 0.00 0.00 41.17 4.11
5074 7177 5.578005 GGGCAATCTTTTAACCCTTACTC 57.422 43.478 0.00 0.00 37.59 2.59
5075 7178 5.262009 GGGCAATCTTTTAACCCTTACTCT 58.738 41.667 0.00 0.00 37.59 3.24
5076 7179 5.357314 GGGCAATCTTTTAACCCTTACTCTC 59.643 44.000 0.00 0.00 37.59 3.20
5077 7180 6.181190 GGCAATCTTTTAACCCTTACTCTCT 58.819 40.000 0.00 0.00 0.00 3.10
5093 7251 7.547370 CCTTACTCTCTTAACACTTCTGAATGG 59.453 40.741 0.00 0.00 0.00 3.16
5098 7256 6.931281 TCTCTTAACACTTCTGAATGGTCTTG 59.069 38.462 0.00 0.00 0.00 3.02
5116 7274 5.355350 GGTCTTGTTACAGGATGAAATGAGG 59.645 44.000 0.00 0.00 39.69 3.86
5155 7313 2.541288 CAGCAGGCTGAAGACACAG 58.459 57.895 20.86 0.00 46.30 3.66
5229 7388 5.324832 TCTCCATTCTTTTCCCTTTCTGT 57.675 39.130 0.00 0.00 0.00 3.41
5249 7408 3.133901 TGTTCTGTGCCTCAAGACACTTA 59.866 43.478 0.00 0.00 37.68 2.24
5287 7446 7.913297 GCTTATCGCTTATGTATTGGTTTTTCA 59.087 33.333 0.00 0.00 35.14 2.69
5310 7469 3.375299 GGTCGGAATGATGAAAGTCTTGG 59.625 47.826 0.00 0.00 0.00 3.61
5397 7556 4.142600 GGATTGCTTCATTCGCTTGTTAGT 60.143 41.667 0.00 0.00 0.00 2.24
5414 7573 6.751514 TGTTAGTTTGTGTTCAGTTGATGT 57.248 33.333 0.00 0.00 0.00 3.06
5418 7577 3.942539 TTGTGTTCAGTTGATGTCGTG 57.057 42.857 0.00 0.00 0.00 4.35
5426 7585 0.512952 GTTGATGTCGTGCTGTGACC 59.487 55.000 1.99 0.00 35.46 4.02
5440 7599 4.184629 GCTGTGACCTCGATAAAGTGAAT 58.815 43.478 0.00 0.00 0.00 2.57
5462 7621 7.175467 TGAATTCTGCAATTACTGTGAACATCT 59.825 33.333 7.05 0.00 31.94 2.90
5466 7625 6.371548 TCTGCAATTACTGTGAACATCTAACC 59.628 38.462 0.00 0.00 0.00 2.85
5467 7626 5.414454 TGCAATTACTGTGAACATCTAACCC 59.586 40.000 0.00 0.00 0.00 4.11
5468 7627 5.414454 GCAATTACTGTGAACATCTAACCCA 59.586 40.000 0.00 0.00 0.00 4.51
5469 7628 6.072175 GCAATTACTGTGAACATCTAACCCAA 60.072 38.462 0.00 0.00 0.00 4.12
5472 7631 9.920946 AATTACTGTGAACATCTAACCCAATAT 57.079 29.630 0.00 0.00 0.00 1.28
5557 7716 1.001641 AGCTTGCCTTTCGATGCCT 60.002 52.632 0.00 0.00 0.00 4.75
5561 7720 0.960364 TTGCCTTTCGATGCCTCACC 60.960 55.000 0.00 0.00 0.00 4.02
5597 7759 6.928979 TCGTCCAGAAGAAAGATAGAGTAG 57.071 41.667 0.00 0.00 0.00 2.57
5616 7778 3.716204 GAGGAAATCGCCCCCACCC 62.716 68.421 0.00 0.00 0.00 4.61
5617 7779 4.833989 GGAAATCGCCCCCACCCC 62.834 72.222 0.00 0.00 0.00 4.95
5618 7780 3.739613 GAAATCGCCCCCACCCCT 61.740 66.667 0.00 0.00 0.00 4.79
5619 7781 3.272847 AAATCGCCCCCACCCCTT 61.273 61.111 0.00 0.00 0.00 3.95
5620 7782 3.296842 AAATCGCCCCCACCCCTTC 62.297 63.158 0.00 0.00 0.00 3.46
5621 7783 4.760220 ATCGCCCCCACCCCTTCT 62.760 66.667 0.00 0.00 0.00 2.85
5625 7787 4.371231 CCCCCACCCCTTCTCCCT 62.371 72.222 0.00 0.00 0.00 4.20
5626 7788 2.692741 CCCCACCCCTTCTCCCTC 60.693 72.222 0.00 0.00 0.00 4.30
5627 7789 3.083997 CCCACCCCTTCTCCCTCG 61.084 72.222 0.00 0.00 0.00 4.63
5628 7790 2.038975 CCACCCCTTCTCCCTCGA 59.961 66.667 0.00 0.00 0.00 4.04
5629 7791 2.359967 CCACCCCTTCTCCCTCGAC 61.360 68.421 0.00 0.00 0.00 4.20
5630 7792 2.362632 ACCCCTTCTCCCTCGACG 60.363 66.667 0.00 0.00 0.00 5.12
5631 7793 3.839432 CCCCTTCTCCCTCGACGC 61.839 72.222 0.00 0.00 0.00 5.19
5632 7794 3.068691 CCCTTCTCCCTCGACGCA 61.069 66.667 0.00 0.00 0.00 5.24
5633 7795 2.427245 CCCTTCTCCCTCGACGCAT 61.427 63.158 0.00 0.00 0.00 4.73
5634 7796 1.227089 CCTTCTCCCTCGACGCATG 60.227 63.158 0.00 0.00 0.00 4.06
5635 7797 1.880340 CTTCTCCCTCGACGCATGC 60.880 63.158 7.91 7.91 0.00 4.06
5636 7798 2.290122 CTTCTCCCTCGACGCATGCT 62.290 60.000 17.13 2.38 0.00 3.79
5637 7799 1.888436 TTCTCCCTCGACGCATGCTT 61.888 55.000 17.13 6.17 0.00 3.91
5638 7800 1.035385 TCTCCCTCGACGCATGCTTA 61.035 55.000 17.13 0.00 0.00 3.09
5639 7801 0.596083 CTCCCTCGACGCATGCTTAG 60.596 60.000 17.13 7.08 0.00 2.18
5640 7802 1.592669 CCCTCGACGCATGCTTAGG 60.593 63.158 17.13 15.37 0.00 2.69
5641 7803 1.592669 CCTCGACGCATGCTTAGGG 60.593 63.158 17.13 6.66 0.00 3.53
5642 7804 1.141881 CTCGACGCATGCTTAGGGT 59.858 57.895 17.13 5.40 34.62 4.34
5643 7805 0.460284 CTCGACGCATGCTTAGGGTT 60.460 55.000 17.13 0.00 31.85 4.11
5644 7806 0.739462 TCGACGCATGCTTAGGGTTG 60.739 55.000 17.13 9.67 35.34 3.77
5645 7807 1.429423 GACGCATGCTTAGGGTTGC 59.571 57.895 17.13 0.00 31.85 4.17
5646 7808 1.993369 GACGCATGCTTAGGGTTGCC 61.993 60.000 17.13 0.00 31.85 4.52
5647 7809 2.045708 CGCATGCTTAGGGTTGCCA 61.046 57.895 17.13 0.00 0.00 4.92
5648 7810 1.512694 GCATGCTTAGGGTTGCCAC 59.487 57.895 11.37 0.00 0.00 5.01
5649 7811 1.948721 GCATGCTTAGGGTTGCCACC 61.949 60.000 11.37 0.00 43.37 4.61
5654 7816 2.764637 CTTAGGGTTGCCACCGCCTT 62.765 60.000 0.03 0.00 45.39 4.35
5689 7851 4.148825 CGGCCACCGGAGAAGGAG 62.149 72.222 9.46 0.00 44.15 3.69
5690 7852 2.683933 GGCCACCGGAGAAGGAGA 60.684 66.667 9.46 0.00 34.73 3.71
5691 7853 2.291043 GGCCACCGGAGAAGGAGAA 61.291 63.158 9.46 0.00 34.73 2.87
5692 7854 1.219393 GCCACCGGAGAAGGAGAAG 59.781 63.158 9.46 0.00 34.73 2.85
5693 7855 1.901085 CCACCGGAGAAGGAGAAGG 59.099 63.158 9.46 0.00 34.73 3.46
5694 7856 0.614979 CCACCGGAGAAGGAGAAGGA 60.615 60.000 9.46 0.00 34.73 3.36
5705 7867 2.868899 AGGAGAAGGAAGCAAACTTGG 58.131 47.619 0.00 0.00 35.82 3.61
5714 7876 1.708341 AGCAAACTTGGCATCCAGTT 58.292 45.000 0.00 0.00 33.81 3.16
5739 7901 2.993853 CCTCCTCTTGGCCCAGAC 59.006 66.667 1.49 0.00 0.00 3.51
5740 7902 1.920325 CCTCCTCTTGGCCCAGACA 60.920 63.158 1.49 0.00 0.00 3.41
5741 7903 1.298014 CTCCTCTTGGCCCAGACAC 59.702 63.158 1.49 0.00 0.00 3.67
5753 7915 4.363990 AGACACACTGCCGCCTCG 62.364 66.667 0.00 0.00 0.00 4.63
5760 7922 4.504916 CTGCCGCCTCGTCTCCTG 62.505 72.222 0.00 0.00 0.00 3.86
5787 7950 2.024871 CTCTCGACACGGATCCGC 59.975 66.667 33.62 16.73 44.19 5.54
5790 7953 0.745486 TCTCGACACGGATCCGCTTA 60.745 55.000 33.62 13.84 44.19 3.09
5791 7954 0.317103 CTCGACACGGATCCGCTTAG 60.317 60.000 33.62 22.02 44.19 2.18
5817 7980 2.824489 GCTAAGGGCCAGCCGTTC 60.824 66.667 19.12 3.70 42.39 3.95
5838 8001 1.628340 CAGATCCAACCAGGTACCACA 59.372 52.381 15.94 0.00 39.02 4.17
5859 8022 4.104102 ACACATCCTACCTTTTCCAACTGA 59.896 41.667 0.00 0.00 0.00 3.41
5957 8120 3.266772 ACTTCTCTAAATCATGGTGGGCA 59.733 43.478 0.00 0.00 0.00 5.36
5998 8161 5.879223 AGATGAACCAATCTACTTTGAGCAG 59.121 40.000 0.00 0.00 35.09 4.24
5999 8162 4.973168 TGAACCAATCTACTTTGAGCAGT 58.027 39.130 0.00 0.00 0.00 4.40
6000 8163 4.756642 TGAACCAATCTACTTTGAGCAGTG 59.243 41.667 0.00 0.00 0.00 3.66
6001 8164 3.077359 ACCAATCTACTTTGAGCAGTGC 58.923 45.455 7.13 7.13 0.00 4.40
6002 8165 3.076621 CCAATCTACTTTGAGCAGTGCA 58.923 45.455 19.20 0.00 0.00 4.57
6003 8166 3.693085 CCAATCTACTTTGAGCAGTGCAT 59.307 43.478 19.20 1.90 0.00 3.96
6004 8167 4.438336 CCAATCTACTTTGAGCAGTGCATG 60.438 45.833 19.20 4.69 0.00 4.06
6005 8168 3.407424 TCTACTTTGAGCAGTGCATGT 57.593 42.857 19.20 10.31 0.00 3.21
6006 8169 3.069289 TCTACTTTGAGCAGTGCATGTG 58.931 45.455 19.20 5.78 0.00 3.21
6007 8170 1.971481 ACTTTGAGCAGTGCATGTGA 58.029 45.000 19.20 0.00 0.00 3.58
6008 8171 1.605710 ACTTTGAGCAGTGCATGTGAC 59.394 47.619 19.20 2.00 0.00 3.67
6009 8172 1.605232 CTTTGAGCAGTGCATGTGACA 59.395 47.619 19.20 4.62 0.00 3.58
6010 8173 1.677942 TTGAGCAGTGCATGTGACAA 58.322 45.000 19.20 10.19 0.00 3.18
6011 8174 1.900245 TGAGCAGTGCATGTGACAAT 58.100 45.000 19.20 0.00 0.00 2.71
6012 8175 3.056588 TGAGCAGTGCATGTGACAATA 57.943 42.857 19.20 0.00 0.00 1.90
6013 8176 3.410508 TGAGCAGTGCATGTGACAATAA 58.589 40.909 19.20 0.00 0.00 1.40
6014 8177 3.189080 TGAGCAGTGCATGTGACAATAAC 59.811 43.478 19.20 0.00 0.00 1.89
6015 8178 3.148412 AGCAGTGCATGTGACAATAACA 58.852 40.909 19.20 0.00 0.00 2.41
6021 8184 3.686241 TGCATGTGACAATAACAGCTCTC 59.314 43.478 0.00 0.00 0.00 3.20
6078 8241 4.764679 TTGTTGTAATGGCTGCAGTAAG 57.235 40.909 16.64 0.00 0.00 2.34
6079 8242 3.081061 TGTTGTAATGGCTGCAGTAAGG 58.919 45.455 16.64 0.00 0.00 2.69
6080 8243 1.750193 TGTAATGGCTGCAGTAAGGC 58.250 50.000 16.64 2.53 42.86 4.35
6094 8257 2.104792 AGTAAGGCAGCAACAGAGTTGA 59.895 45.455 13.58 0.00 0.00 3.18
6116 8279 6.643388 TGAATCGCTCAATATATGCTACCAT 58.357 36.000 0.00 0.00 35.44 3.55
6121 8284 5.069119 CGCTCAATATATGCTACCATAGGGA 59.931 44.000 0.00 0.00 37.36 4.20
6122 8285 6.520272 GCTCAATATATGCTACCATAGGGAG 58.480 44.000 0.00 0.00 37.36 4.30
6123 8286 6.098982 GCTCAATATATGCTACCATAGGGAGT 59.901 42.308 0.00 0.00 37.36 3.85
6124 8287 7.365117 GCTCAATATATGCTACCATAGGGAGTT 60.365 40.741 0.00 0.00 37.36 3.01
6125 8288 7.851228 TCAATATATGCTACCATAGGGAGTTG 58.149 38.462 0.00 0.00 37.36 3.16
6126 8289 7.678171 TCAATATATGCTACCATAGGGAGTTGA 59.322 37.037 0.00 0.00 37.36 3.18
6127 8290 8.489489 CAATATATGCTACCATAGGGAGTTGAT 58.511 37.037 0.00 0.00 37.36 2.57
6128 8291 4.630644 ATGCTACCATAGGGAGTTGATG 57.369 45.455 0.00 0.00 38.05 3.07
6129 8292 2.104792 TGCTACCATAGGGAGTTGATGC 59.895 50.000 0.00 0.00 38.05 3.91
6130 8293 2.868044 GCTACCATAGGGAGTTGATGCG 60.868 54.545 0.00 0.00 38.05 4.73
6131 8294 1.496060 ACCATAGGGAGTTGATGCGA 58.504 50.000 0.00 0.00 38.05 5.10
6132 8295 1.414181 ACCATAGGGAGTTGATGCGAG 59.586 52.381 0.00 0.00 38.05 5.03
6133 8296 1.270518 CCATAGGGAGTTGATGCGAGG 60.271 57.143 0.00 0.00 35.59 4.63
6134 8297 1.051812 ATAGGGAGTTGATGCGAGGG 58.948 55.000 0.00 0.00 0.00 4.30
6135 8298 0.032515 TAGGGAGTTGATGCGAGGGA 60.033 55.000 0.00 0.00 0.00 4.20
6136 8299 1.144936 GGGAGTTGATGCGAGGGAG 59.855 63.158 0.00 0.00 0.00 4.30
6137 8300 1.617947 GGGAGTTGATGCGAGGGAGT 61.618 60.000 0.00 0.00 0.00 3.85
6138 8301 0.250513 GGAGTTGATGCGAGGGAGTT 59.749 55.000 0.00 0.00 0.00 3.01
6139 8302 1.363744 GAGTTGATGCGAGGGAGTTG 58.636 55.000 0.00 0.00 0.00 3.16
6140 8303 0.036010 AGTTGATGCGAGGGAGTTGG 60.036 55.000 0.00 0.00 0.00 3.77
6141 8304 0.036388 GTTGATGCGAGGGAGTTGGA 60.036 55.000 0.00 0.00 0.00 3.53
6142 8305 0.250234 TTGATGCGAGGGAGTTGGAG 59.750 55.000 0.00 0.00 0.00 3.86
6143 8306 1.144936 GATGCGAGGGAGTTGGAGG 59.855 63.158 0.00 0.00 0.00 4.30
6144 8307 1.306141 ATGCGAGGGAGTTGGAGGA 60.306 57.895 0.00 0.00 0.00 3.71
6145 8308 0.909610 ATGCGAGGGAGTTGGAGGAA 60.910 55.000 0.00 0.00 0.00 3.36
6146 8309 0.909610 TGCGAGGGAGTTGGAGGAAT 60.910 55.000 0.00 0.00 0.00 3.01
6147 8310 0.462759 GCGAGGGAGTTGGAGGAATG 60.463 60.000 0.00 0.00 0.00 2.67
6148 8311 1.195115 CGAGGGAGTTGGAGGAATGA 58.805 55.000 0.00 0.00 0.00 2.57
6149 8312 1.134670 CGAGGGAGTTGGAGGAATGAC 60.135 57.143 0.00 0.00 0.00 3.06
6150 8313 1.909302 GAGGGAGTTGGAGGAATGACA 59.091 52.381 0.00 0.00 0.00 3.58
6151 8314 1.912043 AGGGAGTTGGAGGAATGACAG 59.088 52.381 0.00 0.00 0.00 3.51
6152 8315 1.065126 GGGAGTTGGAGGAATGACAGG 60.065 57.143 0.00 0.00 0.00 4.00
6153 8316 1.630878 GGAGTTGGAGGAATGACAGGT 59.369 52.381 0.00 0.00 0.00 4.00
6154 8317 2.616510 GGAGTTGGAGGAATGACAGGTG 60.617 54.545 0.00 0.00 0.00 4.00
6155 8318 2.039084 GAGTTGGAGGAATGACAGGTGT 59.961 50.000 0.00 0.00 0.00 4.16
6156 8319 2.443255 AGTTGGAGGAATGACAGGTGTT 59.557 45.455 0.00 0.00 0.00 3.32
6157 8320 2.554032 GTTGGAGGAATGACAGGTGTTG 59.446 50.000 0.00 0.00 0.00 3.33
6158 8321 2.054021 TGGAGGAATGACAGGTGTTGA 58.946 47.619 0.00 0.00 0.00 3.18
6159 8322 2.224523 TGGAGGAATGACAGGTGTTGAC 60.225 50.000 0.00 0.00 0.00 3.18
6160 8323 2.039084 GGAGGAATGACAGGTGTTGACT 59.961 50.000 0.00 0.00 0.00 3.41
6161 8324 3.496870 GGAGGAATGACAGGTGTTGACTT 60.497 47.826 0.00 0.00 0.00 3.01
6162 8325 4.262894 GGAGGAATGACAGGTGTTGACTTA 60.263 45.833 0.00 0.00 0.00 2.24
6163 8326 5.491982 GAGGAATGACAGGTGTTGACTTAT 58.508 41.667 0.00 0.00 0.00 1.73
6164 8327 6.351881 GGAGGAATGACAGGTGTTGACTTATA 60.352 42.308 0.00 0.00 0.00 0.98
6165 8328 7.200434 AGGAATGACAGGTGTTGACTTATAT 57.800 36.000 0.00 0.00 0.00 0.86
6166 8329 7.633789 AGGAATGACAGGTGTTGACTTATATT 58.366 34.615 0.00 0.00 0.00 1.28
6167 8330 7.770897 AGGAATGACAGGTGTTGACTTATATTC 59.229 37.037 0.00 0.00 0.00 1.75
6168 8331 7.254455 GGAATGACAGGTGTTGACTTATATTCG 60.254 40.741 0.00 0.00 0.00 3.34
6169 8332 6.275494 TGACAGGTGTTGACTTATATTCGA 57.725 37.500 0.00 0.00 0.00 3.71
6170 8333 6.693466 TGACAGGTGTTGACTTATATTCGAA 58.307 36.000 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.511272 TGTCTACATACATCCGTATATTGTAGT 57.489 33.333 0.00 0.00 38.60 2.73
32 33 9.682465 ACACTATGTCTACATACATCCGTATAT 57.318 33.333 0.00 0.00 40.52 0.86
34 35 7.997773 ACACTATGTCTACATACATCCGTAT 57.002 36.000 0.00 0.00 40.52 3.06
35 36 8.370182 TCTACACTATGTCTACATACATCCGTA 58.630 37.037 0.00 0.00 40.52 4.02
36 37 7.222161 TCTACACTATGTCTACATACATCCGT 58.778 38.462 0.00 0.00 40.52 4.69
37 38 7.668525 TCTACACTATGTCTACATACATCCG 57.331 40.000 0.00 0.00 40.52 4.18
55 56 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
56 57 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
57 58 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
58 59 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
59 60 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
60 61 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
61 62 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
62 63 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
63 64 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
64 65 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
65 66 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
66 67 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
67 68 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
68 69 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
69 70 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
70 71 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
71 72 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
72 73 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
73 74 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
74 75 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
75 76 6.432607 TCTAACAAGTGACTACATACGGAG 57.567 41.667 0.00 0.00 0.00 4.63
76 77 6.822667 TTCTAACAAGTGACTACATACGGA 57.177 37.500 0.00 0.00 0.00 4.69
77 78 7.481642 AGATTCTAACAAGTGACTACATACGG 58.518 38.462 0.00 0.00 0.00 4.02
78 79 8.399425 AGAGATTCTAACAAGTGACTACATACG 58.601 37.037 0.00 0.00 0.00 3.06
107 108 9.892130 CTCTGTTCCCAAATAGTATAAGTCTTT 57.108 33.333 0.00 0.00 0.00 2.52
108 109 8.487028 CCTCTGTTCCCAAATAGTATAAGTCTT 58.513 37.037 0.00 0.00 0.00 3.01
109 110 7.071321 CCCTCTGTTCCCAAATAGTATAAGTCT 59.929 40.741 0.00 0.00 0.00 3.24
110 111 7.070821 TCCCTCTGTTCCCAAATAGTATAAGTC 59.929 40.741 0.00 0.00 0.00 3.01
111 112 6.906901 TCCCTCTGTTCCCAAATAGTATAAGT 59.093 38.462 0.00 0.00 0.00 2.24
112 113 7.071321 ACTCCCTCTGTTCCCAAATAGTATAAG 59.929 40.741 0.00 0.00 0.00 1.73
113 114 6.906901 ACTCCCTCTGTTCCCAAATAGTATAA 59.093 38.462 0.00 0.00 0.00 0.98
114 115 6.449956 ACTCCCTCTGTTCCCAAATAGTATA 58.550 40.000 0.00 0.00 0.00 1.47
115 116 5.289510 ACTCCCTCTGTTCCCAAATAGTAT 58.710 41.667 0.00 0.00 0.00 2.12
116 117 4.695606 ACTCCCTCTGTTCCCAAATAGTA 58.304 43.478 0.00 0.00 0.00 1.82
117 118 3.532102 ACTCCCTCTGTTCCCAAATAGT 58.468 45.455 0.00 0.00 0.00 2.12
118 119 5.693769 TTACTCCCTCTGTTCCCAAATAG 57.306 43.478 0.00 0.00 0.00 1.73
119 120 6.457159 TTTTACTCCCTCTGTTCCCAAATA 57.543 37.500 0.00 0.00 0.00 1.40
120 121 5.333566 TTTTACTCCCTCTGTTCCCAAAT 57.666 39.130 0.00 0.00 0.00 2.32
121 122 4.799715 TTTTACTCCCTCTGTTCCCAAA 57.200 40.909 0.00 0.00 0.00 3.28
122 123 4.352595 TCATTTTACTCCCTCTGTTCCCAA 59.647 41.667 0.00 0.00 0.00 4.12
123 124 3.913799 TCATTTTACTCCCTCTGTTCCCA 59.086 43.478 0.00 0.00 0.00 4.37
124 125 4.569719 TCATTTTACTCCCTCTGTTCCC 57.430 45.455 0.00 0.00 0.00 3.97
125 126 6.894339 TTTTCATTTTACTCCCTCTGTTCC 57.106 37.500 0.00 0.00 0.00 3.62
184 185 4.702131 GGTTGGTTGTATCATCTCTTTGCT 59.298 41.667 0.00 0.00 0.00 3.91
208 209 9.211485 CTTAGATTTGGCACTTTGATTTTCAAT 57.789 29.630 0.00 0.00 36.11 2.57
255 256 9.940166 GATTCTTTTTCAAGCAATGACAAATTT 57.060 25.926 4.85 0.00 37.16 1.82
288 301 0.759346 AAGACCTGAGTGAACGCCTT 59.241 50.000 0.00 0.00 0.00 4.35
476 500 1.551430 CTTGATGGGCCAATGCAAAGA 59.449 47.619 11.89 0.00 40.13 2.52
486 510 2.149973 ACCAAAGATCTTGATGGGCC 57.850 50.000 23.91 0.00 37.26 5.80
513 537 4.831155 AGCATGGTTGAAGAATATGGATGG 59.169 41.667 0.00 0.00 0.00 3.51
568 592 6.632672 GCCCATGGATGGTAATCGACTATATT 60.633 42.308 15.22 0.00 46.65 1.28
574 598 1.072331 AGCCCATGGATGGTAATCGAC 59.928 52.381 15.22 0.00 46.65 4.20
630 655 2.404559 TCTGGTAACGCCCCTTCATAT 58.595 47.619 0.00 0.00 42.51 1.78
763 833 1.942657 CCGGGTGCTGATTGTGATAAG 59.057 52.381 0.00 0.00 0.00 1.73
764 834 1.408127 CCCGGGTGCTGATTGTGATAA 60.408 52.381 14.18 0.00 0.00 1.75
766 836 1.077501 CCCGGGTGCTGATTGTGAT 60.078 57.895 14.18 0.00 0.00 3.06
767 837 2.350895 CCCGGGTGCTGATTGTGA 59.649 61.111 14.18 0.00 0.00 3.58
768 838 2.751436 CCCCGGGTGCTGATTGTG 60.751 66.667 21.85 0.00 0.00 3.33
777 847 1.928567 ATATATGGGGCCCCGGGTG 60.929 63.158 36.00 12.44 39.42 4.61
781 2041 0.180406 GCTACATATATGGGGCCCCG 59.820 60.000 36.00 22.46 39.42 5.73
785 2045 2.012051 GCGTGGCTACATATATGGGGC 61.012 57.143 16.96 18.72 0.00 5.80
800 2060 1.897398 GAAAGTGTAGGCGTGCGTGG 61.897 60.000 0.00 0.00 0.00 4.94
811 2071 1.001068 TCGCGTTGATGGGAAAGTGTA 59.999 47.619 5.77 0.00 0.00 2.90
816 2081 1.673009 GGGTCGCGTTGATGGGAAA 60.673 57.895 5.77 0.00 32.17 3.13
875 2151 2.890109 CGTACGGGAGATCGGGTCG 61.890 68.421 7.57 0.00 0.00 4.79
876 2152 1.524621 TCGTACGGGAGATCGGGTC 60.525 63.158 16.52 0.00 0.00 4.46
877 2153 1.821332 GTCGTACGGGAGATCGGGT 60.821 63.158 16.52 0.00 0.00 5.28
878 2154 2.890109 CGTCGTACGGGAGATCGGG 61.890 68.421 16.52 0.00 38.08 5.14
880 2156 1.217585 TAGCGTCGTACGGGAGATCG 61.218 60.000 16.52 11.43 42.82 3.69
881 2157 0.512085 CTAGCGTCGTACGGGAGATC 59.488 60.000 16.52 0.00 42.82 2.75
882 2158 0.883814 CCTAGCGTCGTACGGGAGAT 60.884 60.000 16.52 8.37 42.82 2.75
883 2159 1.522355 CCTAGCGTCGTACGGGAGA 60.522 63.158 16.52 0.00 42.82 3.71
1110 2398 1.380515 CTCCTCCTCCTTCTGGCGA 60.381 63.158 0.00 0.00 0.00 5.54
1113 2401 1.048160 GCTCCTCCTCCTCCTTCTGG 61.048 65.000 0.00 0.00 0.00 3.86
1191 2479 4.144727 TCCTCCTCCTCCTCCGCC 62.145 72.222 0.00 0.00 0.00 6.13
1193 2481 1.150536 CTCTCCTCCTCCTCCTCCG 59.849 68.421 0.00 0.00 0.00 4.63
1374 2662 2.125147 CGCTTCTTCCGGCCATCA 60.125 61.111 2.24 0.00 0.00 3.07
1454 2745 3.615811 AGCCCTGGTCTCCTCCCA 61.616 66.667 0.00 0.00 0.00 4.37
1477 2768 1.878953 TCCTCTTCTTGCGAAACACC 58.121 50.000 0.00 0.00 0.00 4.16
1570 2861 2.696989 TCATCATCACCGATTGCTGT 57.303 45.000 0.00 0.00 0.00 4.40
1581 2872 3.838903 CCTCCTCCTCATCATCATCATCA 59.161 47.826 0.00 0.00 0.00 3.07
1596 2893 1.627834 CTATCCCAAGCATCCTCCTCC 59.372 57.143 0.00 0.00 0.00 4.30
1599 2896 3.641017 GCTATCCCAAGCATCCTCC 57.359 57.895 0.00 0.00 42.30 4.30
1626 2923 4.968181 GCAGACATGACATCAAATTCATCG 59.032 41.667 0.00 0.00 29.64 3.84
1668 2965 8.766476 TCTTTGATATCTTCTTCAGAACCAGAT 58.234 33.333 3.98 5.14 34.16 2.90
1686 2983 9.383519 GTGGAGATAACATGTTTCTCTTTGATA 57.616 33.333 29.27 16.97 36.85 2.15
1688 2985 7.388776 CAGTGGAGATAACATGTTTCTCTTTGA 59.611 37.037 29.27 18.23 36.85 2.69
1704 3001 1.101635 CGACCGGAGCAGTGGAGATA 61.102 60.000 9.46 0.00 0.00 1.98
1705 3002 2.418910 CGACCGGAGCAGTGGAGAT 61.419 63.158 9.46 0.00 0.00 2.75
1711 3008 0.175073 GGATTAACGACCGGAGCAGT 59.825 55.000 9.46 0.00 0.00 4.40
1729 3035 3.340928 TCTCATTGACTGCATTGTCTGG 58.659 45.455 7.52 0.00 37.79 3.86
1733 3039 4.082408 CCACAATCTCATTGACTGCATTGT 60.082 41.667 3.24 0.00 42.83 2.71
1739 3045 4.212143 TCCTCCACAATCTCATTGACTG 57.788 45.455 3.24 0.00 42.83 3.51
1740 3046 6.558014 AGATATCCTCCACAATCTCATTGACT 59.442 38.462 0.00 0.00 42.83 3.41
1742 3048 7.384524 AAGATATCCTCCACAATCTCATTGA 57.615 36.000 0.00 0.00 42.83 2.57
1786 3095 3.368843 CGAAGCTCCTTTTCATCTCCTGA 60.369 47.826 0.00 0.00 0.00 3.86
1787 3096 2.935201 CGAAGCTCCTTTTCATCTCCTG 59.065 50.000 0.00 0.00 0.00 3.86
1788 3097 2.093235 CCGAAGCTCCTTTTCATCTCCT 60.093 50.000 0.00 0.00 0.00 3.69
2074 3383 3.400590 GACGACAACCACGGCGAC 61.401 66.667 16.62 0.00 34.93 5.19
2121 3430 5.014544 TCTCAAAAGATGGAGGGATTCAACT 59.985 40.000 0.00 0.00 0.00 3.16
2133 3442 1.522668 TGTGGCGTCTCAAAAGATGG 58.477 50.000 0.00 0.00 38.72 3.51
2229 3538 1.396301 GATTGCTTCTTGAGTGCCTCG 59.604 52.381 0.00 0.00 32.35 4.63
2300 3609 2.135139 GAGATGCACAGAACGTCACAA 58.865 47.619 0.00 0.00 0.00 3.33
2301 3610 1.341209 AGAGATGCACAGAACGTCACA 59.659 47.619 0.00 0.00 0.00 3.58
2306 3615 2.146342 ACCAAAGAGATGCACAGAACG 58.854 47.619 0.00 0.00 0.00 3.95
2318 3627 3.859386 GCAAATTCGGCATAACCAAAGAG 59.141 43.478 0.00 0.00 39.03 2.85
2347 3658 8.197439 AGAAAATTTCAAAGAAACCACCTGTAG 58.803 33.333 8.55 0.00 0.00 2.74
2353 3664 8.647143 TCATCAGAAAATTTCAAAGAAACCAC 57.353 30.769 8.55 0.00 0.00 4.16
2386 3697 8.920509 AAATCTGTTACAACCTGTTTACAAAC 57.079 30.769 0.00 0.00 39.33 2.93
2409 3720 6.760770 CAGTGTTGAAGCCATTTTCCTTAAAA 59.239 34.615 0.00 0.00 38.87 1.52
2480 3791 1.672356 CTTTCAGCACTGGTCGGGG 60.672 63.158 0.00 0.00 0.00 5.73
2493 3804 3.202906 GTGCTAGTTGTCACACCTTTCA 58.797 45.455 0.00 0.00 33.63 2.69
2507 3818 6.982852 AGCAACGAAGTATATATGTGCTAGT 58.017 36.000 0.00 0.00 45.00 2.57
2509 3820 9.353999 CATAAGCAACGAAGTATATATGTGCTA 57.646 33.333 0.00 0.00 45.00 3.49
2510 3821 7.872993 ACATAAGCAACGAAGTATATATGTGCT 59.127 33.333 0.00 0.00 45.00 4.40
2511 3822 8.018677 ACATAAGCAACGAAGTATATATGTGC 57.981 34.615 0.00 0.00 45.00 4.57
2555 3866 8.863049 CAAAGGCTAAAACTGCAAATAACATAG 58.137 33.333 0.00 0.00 0.00 2.23
2557 3868 7.384932 GTCAAAGGCTAAAACTGCAAATAACAT 59.615 33.333 0.00 0.00 0.00 2.71
2586 3897 7.015877 ACCGCTGGAGGATAATACAGTAAAATA 59.984 37.037 1.50 0.00 33.62 1.40
2598 3909 0.830648 CCTTCACCGCTGGAGGATAA 59.169 55.000 0.00 0.00 45.68 1.75
2621 3932 3.243704 CCAGTAGCAGTAGAAGATCTGGC 60.244 52.174 0.00 0.00 35.55 4.85
2703 4014 9.712359 GAGTTATGGATTAATGTTTAACGAACC 57.288 33.333 0.00 0.00 37.45 3.62
2761 4072 6.992063 ACAAACATATGTGGAGAAGATGTC 57.008 37.500 9.63 0.00 30.55 3.06
2762 4073 6.942005 TGAACAAACATATGTGGAGAAGATGT 59.058 34.615 9.63 2.68 32.81 3.06
2763 4074 7.120285 ACTGAACAAACATATGTGGAGAAGATG 59.880 37.037 9.63 2.11 32.81 2.90
2764 4075 7.120285 CACTGAACAAACATATGTGGAGAAGAT 59.880 37.037 9.63 0.00 32.81 2.40
2913 4236 6.759827 GGTAGCATGCAAATCTCAAATTTCAT 59.240 34.615 21.98 0.00 0.00 2.57
2920 4243 4.334552 TCAAGGTAGCATGCAAATCTCAA 58.665 39.130 21.98 2.33 0.00 3.02
2929 4252 1.535437 GCAGCATTCAAGGTAGCATGC 60.535 52.381 10.51 10.51 42.05 4.06
2981 4304 2.916934 TGTAACAGGCCCCTAAAGATGT 59.083 45.455 0.00 0.00 0.00 3.06
3247 4999 7.732222 AATATGGTTCTTCAAAAATAGGCCA 57.268 32.000 5.01 0.00 0.00 5.36
3316 5334 2.406596 TATGCGGTGGGGAACTTAAC 57.593 50.000 0.00 0.00 0.00 2.01
3365 5383 5.357878 GTGGTCAGAAGCAATTGATTATGGA 59.642 40.000 25.69 13.68 33.92 3.41
3407 5428 7.994425 TTAAAGAGACCAATTGTGAGCAATA 57.006 32.000 4.43 0.00 43.89 1.90
3468 5489 4.481930 TTCAACTACTGAAAATGGTGCG 57.518 40.909 0.00 0.00 41.21 5.34
3482 5503 5.487488 AGGATACCACAGACCAATTCAACTA 59.513 40.000 0.00 0.00 37.17 2.24
3500 5521 7.615403 TGATATTTATGGTCTCAGCAGGATAC 58.385 38.462 0.00 0.00 0.00 2.24
3526 5547 8.482128 TGGACAAGTCAATACACACATGATATA 58.518 33.333 0.00 0.00 0.00 0.86
3527 5548 7.337938 TGGACAAGTCAATACACACATGATAT 58.662 34.615 0.00 0.00 0.00 1.63
3529 5550 5.559770 TGGACAAGTCAATACACACATGAT 58.440 37.500 0.00 0.00 0.00 2.45
3534 5555 4.814234 TGTTCTGGACAAGTCAATACACAC 59.186 41.667 2.29 0.00 34.69 3.82
3535 5556 4.814234 GTGTTCTGGACAAGTCAATACACA 59.186 41.667 13.75 4.01 40.65 3.72
3537 5558 5.056480 CAGTGTTCTGGACAAGTCAATACA 58.944 41.667 2.29 0.00 40.65 2.29
3543 5564 5.345202 CGTATAACAGTGTTCTGGACAAGTC 59.655 44.000 12.82 0.00 45.14 3.01
3544 5565 5.221382 ACGTATAACAGTGTTCTGGACAAGT 60.221 40.000 12.82 0.94 45.14 3.16
3566 5587 1.473434 GCTCCAATGAAGGGTAGGACG 60.473 57.143 0.00 0.00 0.00 4.79
3673 5766 4.202357 ACAGAGTACACAGGCTTCATGAAA 60.202 41.667 9.88 0.00 0.00 2.69
3699 5792 6.834168 TCTCAGTCAAAAACTCAAAACCTT 57.166 33.333 0.00 0.00 35.45 3.50
3738 5835 7.148641 TGTGAACTCAGTCTCAGAAATTCTAC 58.851 38.462 0.00 0.00 0.00 2.59
3806 5903 2.936919 TGCTTATATGCACCCTGGAG 57.063 50.000 9.11 0.00 38.12 3.86
3846 5943 1.277842 CCACAATTTTTACCCCCTGCC 59.722 52.381 0.00 0.00 0.00 4.85
3944 6041 6.189859 TGCATATTGAAGTCCCTGAAGAAAT 58.810 36.000 0.00 0.00 0.00 2.17
4061 6158 3.741344 CCTTTTCGTTCTCATCTGTCGTT 59.259 43.478 0.00 0.00 0.00 3.85
4113 6211 0.034670 GATGCCCTCCTTGCAAGTCT 60.035 55.000 24.35 1.50 42.92 3.24
4234 6332 3.624861 CCTTCATGACATCCTGCTTGTAC 59.375 47.826 0.00 0.00 0.00 2.90
4291 6389 1.072331 ACGTCAAAGGCCAAGATGACT 59.928 47.619 20.64 10.36 39.94 3.41
4622 6720 9.337396 ACACAGTCAAGAAATCAATTACTAACA 57.663 29.630 0.00 0.00 0.00 2.41
4634 6732 4.384056 CACCTGAGACACAGTCAAGAAAT 58.616 43.478 0.00 0.00 44.40 2.17
4649 6747 0.689745 TATCGGGGTTCCCACCTGAG 60.690 60.000 10.25 0.00 45.99 3.35
4805 6903 9.159364 ACAATATCATGCTTATGTATGCACTAG 57.841 33.333 0.00 0.00 42.26 2.57
4809 6907 9.506018 AACTACAATATCATGCTTATGTATGCA 57.494 29.630 0.00 0.00 43.67 3.96
4827 6925 4.057432 GTTGCAATTGCCACAACTACAAT 58.943 39.130 26.94 0.00 40.36 2.71
4828 6926 3.118992 TGTTGCAATTGCCACAACTACAA 60.119 39.130 29.17 11.61 42.61 2.41
4839 6937 5.406767 TTCAACTTTCATGTTGCAATTGC 57.593 34.783 23.69 23.69 44.83 3.56
4879 6977 2.809665 GCTTATCTGGCAGAGGTGATGG 60.810 54.545 23.24 9.18 0.00 3.51
4939 7037 5.885020 GCTCATTGCTAGAATCAAAATGC 57.115 39.130 0.00 0.00 38.95 3.56
4990 7088 1.436600 AGCACTCTTTGAGCACATCG 58.563 50.000 0.00 0.00 34.66 3.84
4996 7094 0.519077 CCCGAAAGCACTCTTTGAGC 59.481 55.000 0.00 0.00 42.24 4.26
5020 7118 0.949397 ACTATGGAATCGCGAGCGTA 59.051 50.000 16.66 1.19 40.74 4.42
5027 7125 8.230486 CCTATGTTAAATGAACTATGGAATCGC 58.770 37.037 0.00 0.00 38.98 4.58
5029 7127 8.515414 GCCCTATGTTAAATGAACTATGGAATC 58.485 37.037 0.00 0.00 38.98 2.52
5032 7130 6.905736 TGCCCTATGTTAAATGAACTATGGA 58.094 36.000 0.00 0.00 38.98 3.41
5036 7134 9.474313 AAAGATTGCCCTATGTTAAATGAACTA 57.526 29.630 0.00 0.00 38.98 2.24
5037 7135 7.961326 AAGATTGCCCTATGTTAAATGAACT 57.039 32.000 0.00 0.00 38.98 3.01
5041 7139 9.313118 GGTTAAAAGATTGCCCTATGTTAAATG 57.687 33.333 0.00 0.00 0.00 2.32
5042 7140 8.482943 GGGTTAAAAGATTGCCCTATGTTAAAT 58.517 33.333 0.00 0.00 34.27 1.40
5044 7142 7.186268 AGGGTTAAAAGATTGCCCTATGTTAA 58.814 34.615 0.00 0.00 41.02 2.01
5045 7143 6.737608 AGGGTTAAAAGATTGCCCTATGTTA 58.262 36.000 0.00 0.00 41.02 2.41
5046 7144 5.589831 AGGGTTAAAAGATTGCCCTATGTT 58.410 37.500 0.00 0.00 41.02 2.71
5051 7154 5.015284 AGAGTAAGGGTTAAAAGATTGCCCT 59.985 40.000 0.00 0.00 43.14 5.19
5053 7156 6.181190 AGAGAGTAAGGGTTAAAAGATTGCC 58.819 40.000 0.00 0.00 0.00 4.52
5060 7163 9.551734 GAAGTGTTAAGAGAGTAAGGGTTAAAA 57.448 33.333 0.00 0.00 0.00 1.52
5067 7170 7.547370 CCATTCAGAAGTGTTAAGAGAGTAAGG 59.453 40.741 0.00 0.00 0.00 2.69
5068 7171 8.091449 ACCATTCAGAAGTGTTAAGAGAGTAAG 58.909 37.037 0.00 0.00 0.00 2.34
5069 7172 7.963532 ACCATTCAGAAGTGTTAAGAGAGTAA 58.036 34.615 0.00 0.00 0.00 2.24
5070 7173 7.451877 AGACCATTCAGAAGTGTTAAGAGAGTA 59.548 37.037 0.00 0.00 0.00 2.59
5071 7174 6.268847 AGACCATTCAGAAGTGTTAAGAGAGT 59.731 38.462 0.00 0.00 0.00 3.24
5073 7176 6.672266 AGACCATTCAGAAGTGTTAAGAGA 57.328 37.500 0.00 0.00 0.00 3.10
5074 7177 6.708054 ACAAGACCATTCAGAAGTGTTAAGAG 59.292 38.462 0.00 0.00 0.00 2.85
5075 7178 6.591935 ACAAGACCATTCAGAAGTGTTAAGA 58.408 36.000 0.00 0.00 0.00 2.10
5076 7179 6.867662 ACAAGACCATTCAGAAGTGTTAAG 57.132 37.500 0.00 0.00 0.00 1.85
5077 7180 7.771361 TGTAACAAGACCATTCAGAAGTGTTAA 59.229 33.333 0.00 0.00 33.41 2.01
5093 7251 5.355350 CCCTCATTTCATCCTGTAACAAGAC 59.645 44.000 0.00 0.00 0.00 3.01
5098 7256 3.629398 CAGCCCTCATTTCATCCTGTAAC 59.371 47.826 0.00 0.00 0.00 2.50
5139 7297 0.871057 GAACTGTGTCTTCAGCCTGC 59.129 55.000 0.00 0.00 38.84 4.85
5144 7302 4.629200 GGCTATCTTGAACTGTGTCTTCAG 59.371 45.833 0.00 0.00 40.80 3.02
5152 7310 3.604582 GCTTCAGGCTATCTTGAACTGT 58.395 45.455 0.00 0.00 38.06 3.55
5155 7313 1.328986 GCGCTTCAGGCTATCTTGAAC 59.671 52.381 0.00 0.00 39.13 3.18
5212 7370 5.221322 GCACAGAACAGAAAGGGAAAAGAAT 60.221 40.000 0.00 0.00 0.00 2.40
5215 7373 3.243535 GGCACAGAACAGAAAGGGAAAAG 60.244 47.826 0.00 0.00 0.00 2.27
5229 7388 3.641436 TCTAAGTGTCTTGAGGCACAGAA 59.359 43.478 17.09 2.30 38.02 3.02
5249 7408 3.113260 GCGATAAGCCCACATAGTTCT 57.887 47.619 0.00 0.00 40.81 3.01
5287 7446 4.256920 CAAGACTTTCATCATTCCGACCT 58.743 43.478 0.00 0.00 0.00 3.85
5333 7492 8.578308 TCAACATTCTGAGCTTTACAAAATTG 57.422 30.769 0.00 0.00 0.00 2.32
5397 7556 3.486708 GCACGACATCAACTGAACACAAA 60.487 43.478 0.00 0.00 0.00 2.83
5414 7573 1.170442 TTATCGAGGTCACAGCACGA 58.830 50.000 0.00 0.00 37.39 4.35
5418 7577 3.232213 TCACTTTATCGAGGTCACAGC 57.768 47.619 0.00 0.00 0.00 4.40
5426 7585 8.607459 AGTAATTGCAGAATTCACTTTATCGAG 58.393 33.333 8.44 0.00 33.63 4.04
5440 7599 7.094805 GGTTAGATGTTCACAGTAATTGCAGAA 60.095 37.037 0.00 0.00 0.00 3.02
5462 7621 1.069513 CTCCCGACGCATATTGGGTTA 59.930 52.381 5.10 0.00 43.89 2.85
5466 7625 0.319900 CCTCTCCCGACGCATATTGG 60.320 60.000 0.00 0.00 0.00 3.16
5467 7626 0.319900 CCCTCTCCCGACGCATATTG 60.320 60.000 0.00 0.00 0.00 1.90
5468 7627 1.472662 CCCCTCTCCCGACGCATATT 61.473 60.000 0.00 0.00 0.00 1.28
5469 7628 1.908793 CCCCTCTCCCGACGCATAT 60.909 63.158 0.00 0.00 0.00 1.78
5492 7651 2.094026 TCCAACATGGACATCACGAGAG 60.094 50.000 0.00 0.00 42.67 3.20
5547 7706 0.669318 GACACGGTGAGGCATCGAAA 60.669 55.000 16.29 0.00 40.81 3.46
5552 7711 1.070786 AAACGACACGGTGAGGCAT 59.929 52.632 16.29 0.00 0.00 4.40
5557 7716 1.484227 CGAAGCAAACGACACGGTGA 61.484 55.000 16.29 0.00 0.00 4.02
5561 7720 1.200839 GGACGAAGCAAACGACACG 59.799 57.895 0.00 0.00 34.70 4.49
5616 7778 1.227089 CATGCGTCGAGGGAGAAGG 60.227 63.158 7.31 0.00 0.00 3.46
5617 7779 1.880340 GCATGCGTCGAGGGAGAAG 60.880 63.158 0.00 0.06 0.00 2.85
5618 7780 1.888436 AAGCATGCGTCGAGGGAGAA 61.888 55.000 13.01 0.00 0.00 2.87
5619 7781 1.035385 TAAGCATGCGTCGAGGGAGA 61.035 55.000 10.11 0.00 0.00 3.71
5620 7782 0.596083 CTAAGCATGCGTCGAGGGAG 60.596 60.000 10.11 0.00 0.00 4.30
5621 7783 1.437573 CTAAGCATGCGTCGAGGGA 59.562 57.895 10.11 4.20 0.00 4.20
5622 7784 1.592669 CCTAAGCATGCGTCGAGGG 60.593 63.158 10.11 5.04 0.00 4.30
5623 7785 1.592669 CCCTAAGCATGCGTCGAGG 60.593 63.158 10.11 12.31 0.00 4.63
5624 7786 0.460284 AACCCTAAGCATGCGTCGAG 60.460 55.000 10.11 2.66 0.00 4.04
5625 7787 0.739462 CAACCCTAAGCATGCGTCGA 60.739 55.000 10.11 0.00 0.00 4.20
5626 7788 1.715585 CAACCCTAAGCATGCGTCG 59.284 57.895 10.11 3.42 0.00 5.12
5627 7789 1.429423 GCAACCCTAAGCATGCGTC 59.571 57.895 10.11 0.00 0.00 5.19
5628 7790 2.046285 GGCAACCCTAAGCATGCGT 61.046 57.895 13.01 12.35 39.66 5.24
5629 7791 2.045708 TGGCAACCCTAAGCATGCG 61.046 57.895 13.01 0.00 39.66 4.73
5630 7792 1.512694 GTGGCAACCCTAAGCATGC 59.487 57.895 10.51 10.51 38.06 4.06
5631 7793 1.656818 CGGTGGCAACCCTAAGCATG 61.657 60.000 4.14 0.00 44.42 4.06
5632 7794 1.378514 CGGTGGCAACCCTAAGCAT 60.379 57.895 4.14 0.00 44.42 3.79
5633 7795 2.033448 CGGTGGCAACCCTAAGCA 59.967 61.111 4.14 0.00 44.42 3.91
5634 7796 3.440415 GCGGTGGCAACCCTAAGC 61.440 66.667 4.14 0.00 44.42 3.09
5635 7797 2.750237 GGCGGTGGCAACCCTAAG 60.750 66.667 4.14 0.00 44.42 2.18
5636 7798 2.836187 AAGGCGGTGGCAACCCTAA 61.836 57.895 12.18 0.00 44.42 2.69
5637 7799 3.253838 AAGGCGGTGGCAACCCTA 61.254 61.111 12.18 0.00 44.42 3.53
5638 7800 4.974721 CAAGGCGGTGGCAACCCT 62.975 66.667 4.14 6.73 44.42 4.34
5681 7843 4.014569 AGTTTGCTTCCTTCTCCTTCTC 57.985 45.455 0.00 0.00 0.00 2.87
5689 7851 2.353109 GGATGCCAAGTTTGCTTCCTTC 60.353 50.000 20.59 1.78 45.06 3.46
5690 7852 1.620323 GGATGCCAAGTTTGCTTCCTT 59.380 47.619 20.59 0.00 45.06 3.36
5691 7853 1.260544 GGATGCCAAGTTTGCTTCCT 58.739 50.000 20.59 0.00 45.06 3.36
5692 7854 3.820595 GGATGCCAAGTTTGCTTCC 57.179 52.632 15.43 15.43 43.22 3.46
5693 7855 1.615392 ACTGGATGCCAAGTTTGCTTC 59.385 47.619 6.34 6.34 30.80 3.86
5694 7856 1.708341 ACTGGATGCCAAGTTTGCTT 58.292 45.000 0.16 0.00 30.80 3.91
5705 7867 2.690778 GGCGTGGACAACTGGATGC 61.691 63.158 0.00 0.00 0.00 3.91
5714 7876 2.583441 CCAAGAGGAGGCGTGGACA 61.583 63.158 0.00 0.00 39.40 4.02
5735 7897 2.740055 GAGGCGGCAGTGTGTCTG 60.740 66.667 13.08 0.00 46.12 3.51
5739 7901 4.363990 AGACGAGGCGGCAGTGTG 62.364 66.667 13.08 0.00 37.34 3.82
5740 7902 4.057428 GAGACGAGGCGGCAGTGT 62.057 66.667 13.08 9.51 37.34 3.55
5741 7903 4.803426 GGAGACGAGGCGGCAGTG 62.803 72.222 13.08 2.22 37.34 3.66
5753 7915 1.899142 AGAGAGAAAGGTGCAGGAGAC 59.101 52.381 0.00 0.00 0.00 3.36
5760 7922 1.704070 GTGTCGAGAGAGAAAGGTGC 58.296 55.000 0.00 0.00 43.49 5.01
5762 7924 0.882474 CCGTGTCGAGAGAGAAAGGT 59.118 55.000 0.00 0.00 43.49 3.50
5787 7950 0.872021 CCTTAGCGGCGCAGACTAAG 60.872 60.000 35.02 28.23 41.57 2.18
5790 7953 4.148825 CCCTTAGCGGCGCAGACT 62.149 66.667 35.02 16.12 0.00 3.24
5802 7965 2.931105 TGGAACGGCTGGCCCTTA 60.931 61.111 0.00 0.00 0.00 2.69
5811 7974 1.002624 TGGTTGGATCTGGAACGGC 60.003 57.895 0.00 0.00 32.53 5.68
5817 7980 1.065418 GTGGTACCTGGTTGGATCTGG 60.065 57.143 14.36 0.00 39.71 3.86
5838 8001 4.652822 GTCAGTTGGAAAAGGTAGGATGT 58.347 43.478 0.00 0.00 0.00 3.06
5859 8022 5.677319 TCTGGTCAAGGAAATAGATTCGT 57.323 39.130 0.00 0.00 39.05 3.85
5913 8076 3.090037 AGAAGCAGAAGAGCATGCAAAT 58.910 40.909 21.98 4.45 45.01 2.32
5914 8077 2.511659 AGAAGCAGAAGAGCATGCAAA 58.488 42.857 21.98 0.00 45.01 3.68
5918 8081 4.757594 AGAAGTAGAAGCAGAAGAGCATG 58.242 43.478 0.00 0.00 36.85 4.06
5919 8082 4.711355 AGAGAAGTAGAAGCAGAAGAGCAT 59.289 41.667 0.00 0.00 36.85 3.79
5920 8083 4.085733 AGAGAAGTAGAAGCAGAAGAGCA 58.914 43.478 0.00 0.00 36.85 4.26
5921 8084 4.718940 AGAGAAGTAGAAGCAGAAGAGC 57.281 45.455 0.00 0.00 0.00 4.09
5922 8085 8.465999 TGATTTAGAGAAGTAGAAGCAGAAGAG 58.534 37.037 0.00 0.00 0.00 2.85
5923 8086 8.354711 TGATTTAGAGAAGTAGAAGCAGAAGA 57.645 34.615 0.00 0.00 0.00 2.87
5924 8087 9.033481 CATGATTTAGAGAAGTAGAAGCAGAAG 57.967 37.037 0.00 0.00 0.00 2.85
5957 8120 2.030027 TCTGAACCTCCATGGACAGT 57.970 50.000 22.70 15.77 40.96 3.55
5986 8149 3.069289 TCACATGCACTGCTCAAAGTAG 58.931 45.455 1.98 0.00 33.91 2.57
5998 8161 3.438087 AGAGCTGTTATTGTCACATGCAC 59.562 43.478 0.00 0.00 0.00 4.57
5999 8162 3.678289 AGAGCTGTTATTGTCACATGCA 58.322 40.909 0.00 0.00 0.00 3.96
6000 8163 3.064545 GGAGAGCTGTTATTGTCACATGC 59.935 47.826 0.00 0.00 0.00 4.06
6001 8164 3.624861 GGGAGAGCTGTTATTGTCACATG 59.375 47.826 0.00 0.00 0.00 3.21
6002 8165 3.370953 GGGGAGAGCTGTTATTGTCACAT 60.371 47.826 0.00 0.00 0.00 3.21
6003 8166 2.027192 GGGGAGAGCTGTTATTGTCACA 60.027 50.000 0.00 0.00 0.00 3.58
6004 8167 2.237392 AGGGGAGAGCTGTTATTGTCAC 59.763 50.000 0.00 0.00 0.00 3.67
6005 8168 2.551270 AGGGGAGAGCTGTTATTGTCA 58.449 47.619 0.00 0.00 0.00 3.58
6006 8169 3.636153 AAGGGGAGAGCTGTTATTGTC 57.364 47.619 0.00 0.00 0.00 3.18
6007 8170 4.388577 AAAAGGGGAGAGCTGTTATTGT 57.611 40.909 0.00 0.00 0.00 2.71
6008 8171 5.012893 AGAAAAAGGGGAGAGCTGTTATTG 58.987 41.667 0.00 0.00 0.00 1.90
6009 8172 5.262455 AGAAAAAGGGGAGAGCTGTTATT 57.738 39.130 0.00 0.00 0.00 1.40
6010 8173 4.936685 AGAAAAAGGGGAGAGCTGTTAT 57.063 40.909 0.00 0.00 0.00 1.89
6011 8174 4.724279 AAGAAAAAGGGGAGAGCTGTTA 57.276 40.909 0.00 0.00 0.00 2.41
6012 8175 3.602205 AAGAAAAAGGGGAGAGCTGTT 57.398 42.857 0.00 0.00 0.00 3.16
6013 8176 3.602205 AAAGAAAAAGGGGAGAGCTGT 57.398 42.857 0.00 0.00 0.00 4.40
6014 8177 4.398319 TGTAAAGAAAAAGGGGAGAGCTG 58.602 43.478 0.00 0.00 0.00 4.24
6015 8178 4.724279 TGTAAAGAAAAAGGGGAGAGCT 57.276 40.909 0.00 0.00 0.00 4.09
6078 8241 1.135859 CGATTCAACTCTGTTGCTGCC 60.136 52.381 5.65 0.00 0.00 4.85
6079 8242 1.727213 GCGATTCAACTCTGTTGCTGC 60.727 52.381 5.65 0.00 0.00 5.25
6080 8243 1.802960 AGCGATTCAACTCTGTTGCTG 59.197 47.619 5.65 0.00 0.00 4.41
6081 8244 2.072298 GAGCGATTCAACTCTGTTGCT 58.928 47.619 5.65 0.00 0.00 3.91
6082 8245 1.800586 TGAGCGATTCAACTCTGTTGC 59.199 47.619 5.65 0.00 33.92 4.17
6094 8257 7.212976 CCTATGGTAGCATATATTGAGCGATT 58.787 38.462 14.70 0.00 0.00 3.34
6116 8279 0.032515 TCCCTCGCATCAACTCCCTA 60.033 55.000 0.00 0.00 0.00 3.53
6121 8284 0.036010 CCAACTCCCTCGCATCAACT 60.036 55.000 0.00 0.00 0.00 3.16
6122 8285 0.036388 TCCAACTCCCTCGCATCAAC 60.036 55.000 0.00 0.00 0.00 3.18
6123 8286 0.250234 CTCCAACTCCCTCGCATCAA 59.750 55.000 0.00 0.00 0.00 2.57
6124 8287 1.617018 CCTCCAACTCCCTCGCATCA 61.617 60.000 0.00 0.00 0.00 3.07
6125 8288 1.144936 CCTCCAACTCCCTCGCATC 59.855 63.158 0.00 0.00 0.00 3.91
6126 8289 0.909610 TTCCTCCAACTCCCTCGCAT 60.910 55.000 0.00 0.00 0.00 4.73
6127 8290 0.909610 ATTCCTCCAACTCCCTCGCA 60.910 55.000 0.00 0.00 0.00 5.10
6128 8291 0.462759 CATTCCTCCAACTCCCTCGC 60.463 60.000 0.00 0.00 0.00 5.03
6129 8292 1.134670 GTCATTCCTCCAACTCCCTCG 60.135 57.143 0.00 0.00 0.00 4.63
6130 8293 1.909302 TGTCATTCCTCCAACTCCCTC 59.091 52.381 0.00 0.00 0.00 4.30
6131 8294 1.912043 CTGTCATTCCTCCAACTCCCT 59.088 52.381 0.00 0.00 0.00 4.20
6132 8295 1.065126 CCTGTCATTCCTCCAACTCCC 60.065 57.143 0.00 0.00 0.00 4.30
6133 8296 1.630878 ACCTGTCATTCCTCCAACTCC 59.369 52.381 0.00 0.00 0.00 3.85
6134 8297 2.039084 ACACCTGTCATTCCTCCAACTC 59.961 50.000 0.00 0.00 0.00 3.01
6135 8298 2.057922 ACACCTGTCATTCCTCCAACT 58.942 47.619 0.00 0.00 0.00 3.16
6136 8299 2.554032 CAACACCTGTCATTCCTCCAAC 59.446 50.000 0.00 0.00 0.00 3.77
6137 8300 2.441375 TCAACACCTGTCATTCCTCCAA 59.559 45.455 0.00 0.00 0.00 3.53
6138 8301 2.054021 TCAACACCTGTCATTCCTCCA 58.946 47.619 0.00 0.00 0.00 3.86
6139 8302 2.039084 AGTCAACACCTGTCATTCCTCC 59.961 50.000 0.00 0.00 0.00 4.30
6140 8303 3.409026 AGTCAACACCTGTCATTCCTC 57.591 47.619 0.00 0.00 0.00 3.71
6141 8304 3.864789 AAGTCAACACCTGTCATTCCT 57.135 42.857 0.00 0.00 0.00 3.36
6142 8305 7.254455 CGAATATAAGTCAACACCTGTCATTCC 60.254 40.741 0.00 0.00 0.00 3.01
6143 8306 7.491372 TCGAATATAAGTCAACACCTGTCATTC 59.509 37.037 0.00 0.00 0.00 2.67
6144 8307 7.327975 TCGAATATAAGTCAACACCTGTCATT 58.672 34.615 0.00 0.00 0.00 2.57
6145 8308 6.873997 TCGAATATAAGTCAACACCTGTCAT 58.126 36.000 0.00 0.00 0.00 3.06
6146 8309 6.275494 TCGAATATAAGTCAACACCTGTCA 57.725 37.500 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.