Multiple sequence alignment - TraesCS7A01G479400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G479400 chr7A 100.000 2528 0 0 1 2528 672005157 672007684 0.000000e+00 4669
1 TraesCS7A01G479400 chr7A 98.558 2428 27 4 1 2425 671960564 671958142 0.000000e+00 4283
2 TraesCS7A01G479400 chr7A 98.515 2425 31 1 1 2425 120828844 120826425 0.000000e+00 4274
3 TraesCS7A01G479400 chr7A 95.327 107 5 0 2422 2528 501147718 501147824 1.200000e-38 171
4 TraesCS7A01G479400 chr7B 98.723 2428 25 3 1 2425 743066309 743068733 0.000000e+00 4307
5 TraesCS7A01G479400 chr5A 98.682 2428 26 4 2 2425 16623270 16620845 0.000000e+00 4301
6 TraesCS7A01G479400 chr5A 98.516 2426 33 2 1 2425 300048569 300050992 0.000000e+00 4277
7 TraesCS7A01G479400 chr2A 98.640 2427 29 3 1 2425 735172803 735175227 0.000000e+00 4296
8 TraesCS7A01G479400 chr3B 98.434 2426 32 2 1 2425 201635799 201633379 0.000000e+00 4265
9 TraesCS7A01G479400 chr1B 98.392 2426 35 3 1 2425 461452226 461454648 0.000000e+00 4261
10 TraesCS7A01G479400 chr5B 98.392 2425 36 1 1 2425 713046207 713043786 0.000000e+00 4259


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G479400 chr7A 672005157 672007684 2527 False 4669 4669 100.000 1 2528 1 chr7A.!!$F2 2527
1 TraesCS7A01G479400 chr7A 671958142 671960564 2422 True 4283 4283 98.558 1 2425 1 chr7A.!!$R2 2424
2 TraesCS7A01G479400 chr7A 120826425 120828844 2419 True 4274 4274 98.515 1 2425 1 chr7A.!!$R1 2424
3 TraesCS7A01G479400 chr7B 743066309 743068733 2424 False 4307 4307 98.723 1 2425 1 chr7B.!!$F1 2424
4 TraesCS7A01G479400 chr5A 16620845 16623270 2425 True 4301 4301 98.682 2 2425 1 chr5A.!!$R1 2423
5 TraesCS7A01G479400 chr5A 300048569 300050992 2423 False 4277 4277 98.516 1 2425 1 chr5A.!!$F1 2424
6 TraesCS7A01G479400 chr2A 735172803 735175227 2424 False 4296 4296 98.640 1 2425 1 chr2A.!!$F1 2424
7 TraesCS7A01G479400 chr3B 201633379 201635799 2420 True 4265 4265 98.434 1 2425 1 chr3B.!!$R1 2424
8 TraesCS7A01G479400 chr1B 461452226 461454648 2422 False 4261 4261 98.392 1 2425 1 chr1B.!!$F1 2424
9 TraesCS7A01G479400 chr5B 713043786 713046207 2421 True 4259 4259 98.392 1 2425 1 chr5B.!!$R1 2424

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
851 853 0.326264 GCCTCATGACTTCCCACTGT 59.674 55.0 0.0 0.0 0.0 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2441 2447 0.183492 TTGCTGAAAGGGCAGTGAGT 59.817 50.0 0.0 0.0 40.9 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 126 0.467384 CGATCTCTTGCCCAGATGGT 59.533 55.000 0.00 0.00 36.04 3.55
146 147 4.022242 GGTTTTTCCTAAGAAAGTCAGCCC 60.022 45.833 0.00 0.00 42.78 5.19
697 699 9.410556 CACCTTAGATTGAAATCGACAAATTTT 57.589 29.630 0.00 0.00 40.35 1.82
851 853 0.326264 GCCTCATGACTTCCCACTGT 59.674 55.000 0.00 0.00 0.00 3.55
1187 1189 6.127591 CCTCGGATACAATTCGATCCTTCTAT 60.128 42.308 11.62 0.00 39.69 1.98
1827 1830 0.040425 GGACACACTTGCGCGAATTT 60.040 50.000 12.10 0.00 0.00 1.82
1835 1838 0.952280 TTGCGCGAATTTGGGTAACA 59.048 45.000 12.10 0.00 39.74 2.41
1861 1864 9.190317 AGCTACAAGGGATAAAAATAAAGGAAG 57.810 33.333 0.00 0.00 0.00 3.46
2232 2238 1.002624 CAGGAAGCGGGCCTAAACA 60.003 57.895 0.84 0.00 33.51 2.83
2297 2303 2.813754 CACCCGAGAAGCAAAAGATTCA 59.186 45.455 0.00 0.00 0.00 2.57
2347 2353 1.141053 GGTCTAATGACAAGGGCCGAT 59.859 52.381 0.00 0.00 44.61 4.18
2429 2435 3.899371 TGGCTACCCACTGCAAGA 58.101 55.556 0.00 0.00 35.79 3.02
2430 2436 2.150449 TGGCTACCCACTGCAAGAA 58.850 52.632 0.00 0.00 35.79 2.52
2431 2437 0.476338 TGGCTACCCACTGCAAGAAA 59.524 50.000 0.00 0.00 35.79 2.52
2432 2438 0.881796 GGCTACCCACTGCAAGAAAC 59.118 55.000 0.00 0.00 37.43 2.78
2433 2439 1.545651 GGCTACCCACTGCAAGAAACT 60.546 52.381 0.00 0.00 37.43 2.66
2434 2440 1.537202 GCTACCCACTGCAAGAAACTG 59.463 52.381 0.00 0.00 37.43 3.16
2435 2441 2.851195 CTACCCACTGCAAGAAACTGT 58.149 47.619 0.00 0.00 37.43 3.55
2436 2442 1.680338 ACCCACTGCAAGAAACTGTC 58.320 50.000 0.00 0.00 37.43 3.51
2437 2443 1.064758 ACCCACTGCAAGAAACTGTCA 60.065 47.619 0.00 0.00 37.43 3.58
2438 2444 1.334869 CCCACTGCAAGAAACTGTCAC 59.665 52.381 0.00 0.00 37.43 3.67
2439 2445 2.292267 CCACTGCAAGAAACTGTCACT 58.708 47.619 0.00 0.00 37.43 3.41
2440 2446 2.032550 CCACTGCAAGAAACTGTCACTG 59.967 50.000 0.00 0.00 37.43 3.66
2441 2447 2.938451 CACTGCAAGAAACTGTCACTGA 59.062 45.455 0.00 0.00 37.43 3.41
2442 2448 2.939103 ACTGCAAGAAACTGTCACTGAC 59.061 45.455 1.86 1.86 37.43 3.51
2443 2449 3.201290 CTGCAAGAAACTGTCACTGACT 58.799 45.455 10.54 0.00 34.07 3.41
2444 2450 3.198068 TGCAAGAAACTGTCACTGACTC 58.802 45.455 10.54 0.00 33.15 3.36
2445 2451 3.198068 GCAAGAAACTGTCACTGACTCA 58.802 45.455 10.54 0.00 33.15 3.41
2446 2452 3.001736 GCAAGAAACTGTCACTGACTCAC 59.998 47.826 10.54 0.00 33.15 3.51
2447 2453 4.437239 CAAGAAACTGTCACTGACTCACT 58.563 43.478 10.54 1.19 33.15 3.41
2448 2454 4.052159 AGAAACTGTCACTGACTCACTG 57.948 45.455 10.54 0.00 33.15 3.66
2449 2455 2.231215 AACTGTCACTGACTCACTGC 57.769 50.000 10.54 0.00 33.15 4.40
2450 2456 0.390860 ACTGTCACTGACTCACTGCC 59.609 55.000 10.54 0.00 33.15 4.85
2451 2457 0.320247 CTGTCACTGACTCACTGCCC 60.320 60.000 10.54 0.00 33.15 5.36
2452 2458 0.760567 TGTCACTGACTCACTGCCCT 60.761 55.000 10.54 0.00 33.15 5.19
2453 2459 0.394565 GTCACTGACTCACTGCCCTT 59.605 55.000 1.58 0.00 0.00 3.95
2454 2460 1.131638 TCACTGACTCACTGCCCTTT 58.868 50.000 0.00 0.00 0.00 3.11
2455 2461 1.070758 TCACTGACTCACTGCCCTTTC 59.929 52.381 0.00 0.00 0.00 2.62
2456 2462 1.131638 ACTGACTCACTGCCCTTTCA 58.868 50.000 0.00 0.00 0.00 2.69
2457 2463 1.071385 ACTGACTCACTGCCCTTTCAG 59.929 52.381 0.00 0.00 39.86 3.02
2458 2464 0.250467 TGACTCACTGCCCTTTCAGC 60.250 55.000 0.00 0.00 37.59 4.26
2459 2465 0.250467 GACTCACTGCCCTTTCAGCA 60.250 55.000 0.00 0.00 37.59 4.41
2460 2466 0.183492 ACTCACTGCCCTTTCAGCAA 59.817 50.000 0.00 0.00 40.35 3.91
2461 2467 0.879765 CTCACTGCCCTTTCAGCAAG 59.120 55.000 0.00 0.00 40.35 4.01
2462 2468 0.473755 TCACTGCCCTTTCAGCAAGA 59.526 50.000 0.00 0.00 40.35 3.02
2463 2469 0.595095 CACTGCCCTTTCAGCAAGAC 59.405 55.000 0.00 0.00 40.35 3.01
2464 2470 0.183492 ACTGCCCTTTCAGCAAGACA 59.817 50.000 0.00 0.00 40.35 3.41
2465 2471 0.879765 CTGCCCTTTCAGCAAGACAG 59.120 55.000 0.00 0.00 40.35 3.51
2466 2472 0.183492 TGCCCTTTCAGCAAGACAGT 59.817 50.000 0.00 0.00 37.28 3.55
2467 2473 1.322442 GCCCTTTCAGCAAGACAGTT 58.678 50.000 0.00 0.00 33.80 3.16
2468 2474 2.158682 TGCCCTTTCAGCAAGACAGTTA 60.159 45.455 0.00 0.00 37.28 2.24
2469 2475 2.884639 GCCCTTTCAGCAAGACAGTTAA 59.115 45.455 0.00 0.00 33.80 2.01
2470 2476 3.304726 GCCCTTTCAGCAAGACAGTTAAC 60.305 47.826 0.00 0.00 33.80 2.01
2471 2477 4.137543 CCCTTTCAGCAAGACAGTTAACT 58.862 43.478 1.12 1.12 33.80 2.24
2472 2478 4.214332 CCCTTTCAGCAAGACAGTTAACTC 59.786 45.833 4.77 0.00 33.80 3.01
2473 2479 4.816385 CCTTTCAGCAAGACAGTTAACTCA 59.184 41.667 4.77 0.00 33.80 3.41
2474 2480 5.277538 CCTTTCAGCAAGACAGTTAACTCAC 60.278 44.000 4.77 2.86 33.80 3.51
2475 2481 3.728845 TCAGCAAGACAGTTAACTCACC 58.271 45.455 4.77 0.00 0.00 4.02
2476 2482 3.388024 TCAGCAAGACAGTTAACTCACCT 59.612 43.478 4.77 0.18 0.00 4.00
2477 2483 4.587262 TCAGCAAGACAGTTAACTCACCTA 59.413 41.667 4.77 0.00 0.00 3.08
2478 2484 5.246203 TCAGCAAGACAGTTAACTCACCTAT 59.754 40.000 4.77 0.00 0.00 2.57
2479 2485 5.349817 CAGCAAGACAGTTAACTCACCTATG 59.650 44.000 4.77 2.14 0.00 2.23
2480 2486 5.246203 AGCAAGACAGTTAACTCACCTATGA 59.754 40.000 4.77 0.00 0.00 2.15
2481 2487 5.932303 GCAAGACAGTTAACTCACCTATGAA 59.068 40.000 4.77 0.00 33.30 2.57
2482 2488 6.426937 GCAAGACAGTTAACTCACCTATGAAA 59.573 38.462 4.77 0.00 33.30 2.69
2483 2489 7.119846 GCAAGACAGTTAACTCACCTATGAAAT 59.880 37.037 4.77 0.00 33.30 2.17
2484 2490 9.653287 CAAGACAGTTAACTCACCTATGAAATA 57.347 33.333 4.77 0.00 33.30 1.40
2485 2491 9.877178 AAGACAGTTAACTCACCTATGAAATAG 57.123 33.333 4.77 0.00 46.56 1.73
2486 2492 9.036980 AGACAGTTAACTCACCTATGAAATAGT 57.963 33.333 4.77 0.00 45.54 2.12
2497 2503 9.444600 TCACCTATGAAATAGTACAAAGAAACC 57.555 33.333 0.00 0.00 45.54 3.27
2498 2504 9.226606 CACCTATGAAATAGTACAAAGAAACCA 57.773 33.333 0.00 0.00 45.54 3.67
2499 2505 9.227777 ACCTATGAAATAGTACAAAGAAACCAC 57.772 33.333 0.00 0.00 45.54 4.16
2500 2506 9.226606 CCTATGAAATAGTACAAAGAAACCACA 57.773 33.333 0.00 0.00 45.54 4.17
2508 2514 9.877178 ATAGTACAAAGAAACCACATAGAGAAG 57.123 33.333 0.00 0.00 0.00 2.85
2509 2515 7.162082 AGTACAAAGAAACCACATAGAGAAGG 58.838 38.462 0.00 0.00 0.00 3.46
2510 2516 6.187727 ACAAAGAAACCACATAGAGAAGGA 57.812 37.500 0.00 0.00 0.00 3.36
2511 2517 6.601332 ACAAAGAAACCACATAGAGAAGGAA 58.399 36.000 0.00 0.00 0.00 3.36
2512 2518 7.060421 ACAAAGAAACCACATAGAGAAGGAAA 58.940 34.615 0.00 0.00 0.00 3.13
2513 2519 7.229506 ACAAAGAAACCACATAGAGAAGGAAAG 59.770 37.037 0.00 0.00 0.00 2.62
2514 2520 6.441088 AGAAACCACATAGAGAAGGAAAGT 57.559 37.500 0.00 0.00 0.00 2.66
2515 2521 7.554959 AGAAACCACATAGAGAAGGAAAGTA 57.445 36.000 0.00 0.00 0.00 2.24
2516 2522 7.974504 AGAAACCACATAGAGAAGGAAAGTAA 58.025 34.615 0.00 0.00 0.00 2.24
2517 2523 7.878644 AGAAACCACATAGAGAAGGAAAGTAAC 59.121 37.037 0.00 0.00 0.00 2.50
2518 2524 6.681729 ACCACATAGAGAAGGAAAGTAACA 57.318 37.500 0.00 0.00 0.00 2.41
2519 2525 6.702329 ACCACATAGAGAAGGAAAGTAACAG 58.298 40.000 0.00 0.00 0.00 3.16
2520 2526 6.497259 ACCACATAGAGAAGGAAAGTAACAGA 59.503 38.462 0.00 0.00 0.00 3.41
2521 2527 7.038659 CCACATAGAGAAGGAAAGTAACAGAG 58.961 42.308 0.00 0.00 0.00 3.35
2522 2528 6.533367 CACATAGAGAAGGAAAGTAACAGAGC 59.467 42.308 0.00 0.00 0.00 4.09
2523 2529 6.439058 ACATAGAGAAGGAAAGTAACAGAGCT 59.561 38.462 0.00 0.00 0.00 4.09
2524 2530 7.616150 ACATAGAGAAGGAAAGTAACAGAGCTA 59.384 37.037 0.00 0.00 0.00 3.32
2525 2531 8.637986 CATAGAGAAGGAAAGTAACAGAGCTAT 58.362 37.037 0.00 0.00 0.00 2.97
2526 2532 9.869667 ATAGAGAAGGAAAGTAACAGAGCTATA 57.130 33.333 0.00 0.00 0.00 1.31
2527 2533 8.596781 AGAGAAGGAAAGTAACAGAGCTATAA 57.403 34.615 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 126 5.061721 AGGGCTGACTTTCTTAGGAAAAA 57.938 39.130 1.36 0.00 40.41 1.94
146 147 2.515523 CGAGGGGCAGCCATGAAG 60.516 66.667 15.19 0.00 0.00 3.02
697 699 6.009589 TCTAAAGAATCCATCTGGCAAAACA 58.990 36.000 0.00 0.00 38.79 2.83
825 827 0.107643 GAAGTCATGAGGCTAGCCCC 59.892 60.000 30.42 20.36 36.58 5.80
826 828 0.107643 GGAAGTCATGAGGCTAGCCC 59.892 60.000 30.42 21.06 36.58 5.19
851 853 2.925706 TTAGGTGCACCCCTCGCA 60.926 61.111 32.29 7.99 35.97 5.10
1437 1439 0.326595 TAGGGATTGGCACGCTTTCA 59.673 50.000 0.09 0.00 32.98 2.69
1827 1830 2.032965 TCCCTTGTAGCTGTTACCCA 57.967 50.000 0.00 0.00 0.00 4.51
1835 1838 9.190317 CTTCCTTTATTTTTATCCCTTGTAGCT 57.810 33.333 0.00 0.00 0.00 3.32
2297 2303 4.081322 TGTCTTTTCCGCCTTTACTCTT 57.919 40.909 0.00 0.00 0.00 2.85
2347 2353 3.744719 CGTCCCGAGCTTCCGTCA 61.745 66.667 0.00 0.00 0.00 4.35
2425 2431 4.269603 CAGTGAGTCAGTGACAGTTTCTTG 59.730 45.833 24.73 11.77 36.99 3.02
2426 2432 4.437239 CAGTGAGTCAGTGACAGTTTCTT 58.563 43.478 24.73 2.17 36.99 2.52
2427 2433 3.739519 GCAGTGAGTCAGTGACAGTTTCT 60.740 47.826 28.46 12.07 36.99 2.52
2428 2434 2.541762 GCAGTGAGTCAGTGACAGTTTC 59.458 50.000 28.46 13.73 36.99 2.78
2429 2435 2.555199 GCAGTGAGTCAGTGACAGTTT 58.445 47.619 28.46 4.14 36.99 2.66
2430 2436 1.202580 GGCAGTGAGTCAGTGACAGTT 60.203 52.381 28.46 4.53 42.04 3.16
2431 2437 0.390860 GGCAGTGAGTCAGTGACAGT 59.609 55.000 28.46 5.32 42.04 3.55
2432 2438 0.320247 GGGCAGTGAGTCAGTGACAG 60.320 60.000 30.50 7.33 44.08 3.51
2433 2439 0.760567 AGGGCAGTGAGTCAGTGACA 60.761 55.000 30.50 2.46 44.08 3.58
2434 2440 0.394565 AAGGGCAGTGAGTCAGTGAC 59.605 55.000 28.46 26.12 41.75 3.67
2435 2441 1.070758 GAAAGGGCAGTGAGTCAGTGA 59.929 52.381 28.46 0.00 36.99 3.41
2436 2442 1.202687 TGAAAGGGCAGTGAGTCAGTG 60.203 52.381 21.57 21.57 37.80 3.66
2437 2443 1.071385 CTGAAAGGGCAGTGAGTCAGT 59.929 52.381 0.00 0.00 0.00 3.41
2438 2444 1.805869 CTGAAAGGGCAGTGAGTCAG 58.194 55.000 0.00 0.00 0.00 3.51
2439 2445 0.250467 GCTGAAAGGGCAGTGAGTCA 60.250 55.000 0.00 0.00 38.17 3.41
2440 2446 0.250467 TGCTGAAAGGGCAGTGAGTC 60.250 55.000 0.00 0.00 38.17 3.36
2441 2447 0.183492 TTGCTGAAAGGGCAGTGAGT 59.817 50.000 0.00 0.00 40.90 3.41
2442 2448 0.879765 CTTGCTGAAAGGGCAGTGAG 59.120 55.000 0.00 0.00 40.90 3.51
2443 2449 0.473755 TCTTGCTGAAAGGGCAGTGA 59.526 50.000 0.00 0.00 40.90 3.41
2444 2450 0.595095 GTCTTGCTGAAAGGGCAGTG 59.405 55.000 0.00 0.00 40.90 3.66
2445 2451 0.183492 TGTCTTGCTGAAAGGGCAGT 59.817 50.000 0.00 0.00 40.90 4.40
2446 2452 0.879765 CTGTCTTGCTGAAAGGGCAG 59.120 55.000 0.00 1.59 40.90 4.85
2447 2453 0.183492 ACTGTCTTGCTGAAAGGGCA 59.817 50.000 0.00 0.00 34.30 5.36
2448 2454 1.322442 AACTGTCTTGCTGAAAGGGC 58.678 50.000 0.00 0.00 34.30 5.19
2449 2455 4.137543 AGTTAACTGTCTTGCTGAAAGGG 58.862 43.478 7.48 0.00 34.30 3.95
2450 2456 4.816385 TGAGTTAACTGTCTTGCTGAAAGG 59.184 41.667 14.14 0.00 34.30 3.11
2451 2457 5.277538 GGTGAGTTAACTGTCTTGCTGAAAG 60.278 44.000 14.14 0.00 36.11 2.62
2452 2458 4.574828 GGTGAGTTAACTGTCTTGCTGAAA 59.425 41.667 14.14 0.00 0.00 2.69
2453 2459 4.127171 GGTGAGTTAACTGTCTTGCTGAA 58.873 43.478 14.14 0.00 0.00 3.02
2454 2460 3.388024 AGGTGAGTTAACTGTCTTGCTGA 59.612 43.478 14.14 0.00 0.00 4.26
2455 2461 3.733337 AGGTGAGTTAACTGTCTTGCTG 58.267 45.455 14.14 0.00 0.00 4.41
2456 2462 5.246203 TCATAGGTGAGTTAACTGTCTTGCT 59.754 40.000 14.14 1.85 0.00 3.91
2457 2463 5.479306 TCATAGGTGAGTTAACTGTCTTGC 58.521 41.667 14.14 0.00 0.00 4.01
2458 2464 7.962964 TTTCATAGGTGAGTTAACTGTCTTG 57.037 36.000 14.14 3.49 35.39 3.02
2459 2465 9.877178 CTATTTCATAGGTGAGTTAACTGTCTT 57.123 33.333 14.14 4.81 35.39 3.01
2460 2466 9.036980 ACTATTTCATAGGTGAGTTAACTGTCT 57.963 33.333 14.14 9.64 37.18 3.41
2471 2477 9.444600 GGTTTCTTTGTACTATTTCATAGGTGA 57.555 33.333 0.00 0.00 37.18 4.02
2472 2478 9.226606 TGGTTTCTTTGTACTATTTCATAGGTG 57.773 33.333 0.00 0.00 37.18 4.00
2473 2479 9.227777 GTGGTTTCTTTGTACTATTTCATAGGT 57.772 33.333 0.00 0.00 37.18 3.08
2474 2480 9.226606 TGTGGTTTCTTTGTACTATTTCATAGG 57.773 33.333 0.00 0.00 37.18 2.57
2482 2488 9.877178 CTTCTCTATGTGGTTTCTTTGTACTAT 57.123 33.333 0.00 0.00 0.00 2.12
2483 2489 8.311836 CCTTCTCTATGTGGTTTCTTTGTACTA 58.688 37.037 0.00 0.00 0.00 1.82
2484 2490 7.016268 TCCTTCTCTATGTGGTTTCTTTGTACT 59.984 37.037 0.00 0.00 0.00 2.73
2485 2491 7.159372 TCCTTCTCTATGTGGTTTCTTTGTAC 58.841 38.462 0.00 0.00 0.00 2.90
2486 2492 7.311092 TCCTTCTCTATGTGGTTTCTTTGTA 57.689 36.000 0.00 0.00 0.00 2.41
2487 2493 6.187727 TCCTTCTCTATGTGGTTTCTTTGT 57.812 37.500 0.00 0.00 0.00 2.83
2488 2494 7.229506 ACTTTCCTTCTCTATGTGGTTTCTTTG 59.770 37.037 0.00 0.00 0.00 2.77
2489 2495 7.290813 ACTTTCCTTCTCTATGTGGTTTCTTT 58.709 34.615 0.00 0.00 0.00 2.52
2490 2496 6.842676 ACTTTCCTTCTCTATGTGGTTTCTT 58.157 36.000 0.00 0.00 0.00 2.52
2491 2497 6.441088 ACTTTCCTTCTCTATGTGGTTTCT 57.559 37.500 0.00 0.00 0.00 2.52
2492 2498 7.660208 TGTTACTTTCCTTCTCTATGTGGTTTC 59.340 37.037 0.00 0.00 0.00 2.78
2493 2499 7.514721 TGTTACTTTCCTTCTCTATGTGGTTT 58.485 34.615 0.00 0.00 0.00 3.27
2494 2500 7.016268 TCTGTTACTTTCCTTCTCTATGTGGTT 59.984 37.037 0.00 0.00 0.00 3.67
2495 2501 6.497259 TCTGTTACTTTCCTTCTCTATGTGGT 59.503 38.462 0.00 0.00 0.00 4.16
2496 2502 6.936279 TCTGTTACTTTCCTTCTCTATGTGG 58.064 40.000 0.00 0.00 0.00 4.17
2497 2503 6.533367 GCTCTGTTACTTTCCTTCTCTATGTG 59.467 42.308 0.00 0.00 0.00 3.21
2498 2504 6.439058 AGCTCTGTTACTTTCCTTCTCTATGT 59.561 38.462 0.00 0.00 0.00 2.29
2499 2505 6.872920 AGCTCTGTTACTTTCCTTCTCTATG 58.127 40.000 0.00 0.00 0.00 2.23
2500 2506 8.776061 ATAGCTCTGTTACTTTCCTTCTCTAT 57.224 34.615 0.00 0.00 0.00 1.98
2501 2507 9.696572 TTATAGCTCTGTTACTTTCCTTCTCTA 57.303 33.333 0.00 0.00 0.00 2.43
2502 2508 8.596781 TTATAGCTCTGTTACTTTCCTTCTCT 57.403 34.615 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.