Multiple sequence alignment - TraesCS7A01G479200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G479200 chr7A 100.000 4917 0 0 1 4917 671929940 671925024 0.000000e+00 9081.0
1 TraesCS7A01G479200 chr7A 88.235 425 35 7 1247 1671 205894160 205894569 1.230000e-135 494.0
2 TraesCS7A01G479200 chr7B 92.554 2095 95 35 2372 4444 647000530 646998475 0.000000e+00 2948.0
3 TraesCS7A01G479200 chr7B 91.383 1555 82 14 851 2375 647002560 647001028 0.000000e+00 2082.0
4 TraesCS7A01G479200 chr7B 92.258 155 11 1 4708 4862 646997976 646997823 8.290000e-53 219.0
5 TraesCS7A01G479200 chr7D 90.954 2034 109 43 2372 4399 580318276 580316312 0.000000e+00 2667.0
6 TraesCS7A01G479200 chr7D 91.908 692 54 2 1394 2084 580319718 580319028 0.000000e+00 966.0
7 TraesCS7A01G479200 chr7D 96.124 516 13 4 39 548 580335039 580334525 0.000000e+00 835.0
8 TraesCS7A01G479200 chr7D 86.475 695 53 14 690 1362 580320391 580319716 0.000000e+00 725.0
9 TraesCS7A01G479200 chr7D 93.609 266 14 2 2110 2375 580319036 580318774 1.280000e-105 394.0
10 TraesCS7A01G479200 chr7D 87.234 188 22 2 4450 4635 614279544 614279731 3.860000e-51 213.0
11 TraesCS7A01G479200 chr7D 91.129 124 7 1 4678 4797 580316210 580316087 1.090000e-36 165.0
12 TraesCS7A01G479200 chr5B 87.449 486 42 7 1186 1671 598668127 598668593 4.330000e-150 542.0
13 TraesCS7A01G479200 chr5B 88.471 425 35 4 1247 1671 36581911 36581501 7.350000e-138 501.0
14 TraesCS7A01G479200 chr5B 87.302 189 23 1 4449 4636 491851256 491851068 1.070000e-51 215.0
15 TraesCS7A01G479200 chr1B 87.243 486 43 7 1186 1671 626335354 626334888 2.010000e-148 536.0
16 TraesCS7A01G479200 chr5A 89.021 419 32 9 1253 1671 101312535 101312131 1.580000e-139 507.0
17 TraesCS7A01G479200 chr5A 87.097 186 22 2 4452 4635 138079983 138080168 4.990000e-50 209.0
18 TraesCS7A01G479200 chr1A 88.471 425 35 5 1247 1671 74241428 74241838 7.350000e-138 501.0
19 TraesCS7A01G479200 chr1A 86.842 114 11 2 1187 1300 2154349 2154458 1.860000e-24 124.0
20 TraesCS7A01G479200 chrUn 88.471 425 32 5 1247 1671 767663 767256 9.500000e-137 497.0
21 TraesCS7A01G479200 chrUn 88.471 425 32 5 1247 1671 71269583 71269990 9.500000e-137 497.0
22 TraesCS7A01G479200 chrUn 88.471 425 32 6 1247 1671 370169578 370169171 9.500000e-137 497.0
23 TraesCS7A01G479200 chr2B 88.235 425 36 4 1247 1671 6772238 6771828 3.420000e-136 496.0
24 TraesCS7A01G479200 chr2B 88.235 425 36 4 1247 1671 6907670 6907260 3.420000e-136 496.0
25 TraesCS7A01G479200 chr2B 88.043 184 21 1 4452 4634 184906839 184906656 2.980000e-52 217.0
26 TraesCS7A01G479200 chr3B 89.418 189 19 1 4452 4639 828437578 828437390 2.290000e-58 237.0
27 TraesCS7A01G479200 chr6D 87.634 186 21 2 4452 4635 39090503 39090318 1.070000e-51 215.0
28 TraesCS7A01G479200 chr5D 86.911 191 22 2 4451 4638 269732196 269732006 1.390000e-50 211.0
29 TraesCS7A01G479200 chr3A 86.772 189 24 1 4452 4640 135529837 135530024 4.990000e-50 209.0
30 TraesCS7A01G479200 chr2D 87.166 187 20 4 4454 4638 59331476 59331292 4.990000e-50 209.0
31 TraesCS7A01G479200 chr2A 90.517 116 6 1 1185 1300 139067373 139067483 1.100000e-31 148.0
32 TraesCS7A01G479200 chr2A 87.069 116 11 1 1185 1300 716709541 716709430 1.440000e-25 128.0
33 TraesCS7A01G479200 chr4B 88.608 79 5 3 2187 2262 100937593 100937670 5.240000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G479200 chr7A 671925024 671929940 4916 True 9081.000000 9081 100.000 1 4917 1 chr7A.!!$R1 4916
1 TraesCS7A01G479200 chr7B 646997823 647002560 4737 True 1749.666667 2948 92.065 851 4862 3 chr7B.!!$R1 4011
2 TraesCS7A01G479200 chr7D 580316087 580320391 4304 True 983.400000 2667 90.815 690 4797 5 chr7D.!!$R2 4107
3 TraesCS7A01G479200 chr7D 580334525 580335039 514 True 835.000000 835 96.124 39 548 1 chr7D.!!$R1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
688 694 0.107165 GGGCATCTGGTGGTACCTTC 60.107 60.0 14.36 6.3 39.58 3.46 F
1221 1268 0.250513 GATCCTTCGCTTCCCTGTGT 59.749 55.0 0.00 0.0 0.00 3.72 F
1370 1417 0.320771 TCTCGCTCCAGCTTTTCCAC 60.321 55.0 0.00 0.0 39.32 4.02 F
1560 1631 0.544357 TGGGTGTGTGACTAGAGGGG 60.544 60.0 0.00 0.0 0.00 4.79 F
3145 3721 0.253044 TCAACAGTATGCCTGCTCCC 59.747 55.0 0.00 0.0 45.68 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1611 1682 0.175302 ACTGCCTGCTCATCTTCTCG 59.825 55.000 0.00 0.0 0.00 4.04 R
2956 3532 1.331214 CCACTGCAACATTTGTCCCT 58.669 50.000 0.00 0.0 0.00 4.20 R
2969 3545 4.632538 AACAAACTGAAGTAACCACTGC 57.367 40.909 0.00 0.0 34.36 4.40 R
3480 4058 4.443034 GCGAGTTAGGATGAAGGTTGGTAT 60.443 45.833 0.00 0.0 0.00 2.73 R
4040 4626 0.960364 ATCGATGTTTTGCGGCCAGT 60.960 50.000 2.24 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.665175 TTTCTACTATTTACGTTCAGAAGTCG 57.335 34.615 0.00 0.00 0.00 4.18
36 37 6.779117 TCTACTATTTACGTTCAGAAGTCGG 58.221 40.000 0.00 0.00 0.00 4.79
37 38 5.633830 ACTATTTACGTTCAGAAGTCGGA 57.366 39.130 0.00 0.00 0.00 4.55
85 86 7.065563 GGTACAAGATGCCAGATGATCATAATC 59.934 40.741 8.54 7.31 32.12 1.75
107 108 2.223782 GCCAAGTTTGTCAATGTCAGCA 60.224 45.455 0.00 0.00 0.00 4.41
108 109 3.374745 CCAAGTTTGTCAATGTCAGCAC 58.625 45.455 0.00 0.00 0.00 4.40
223 229 5.008613 TGTTTGATGGAGTAACTGCTCAAAC 59.991 40.000 21.37 21.37 42.39 2.93
239 245 5.147162 GCTCAAACATTTGGTCGTCTTAAG 58.853 41.667 4.58 0.00 38.66 1.85
265 271 1.794222 GGCTCAGCAATAACGCGTT 59.206 52.632 29.27 29.27 36.85 4.84
266 272 1.003851 GGCTCAGCAATAACGCGTTA 58.996 50.000 31.64 31.64 36.85 3.18
285 291 6.346279 CGCGTTAACTAACATCTTCAGTCAAA 60.346 38.462 3.71 0.00 35.99 2.69
474 480 6.413892 TGGTTCAATACACATCAGAATAGCA 58.586 36.000 0.00 0.00 0.00 3.49
479 485 8.969260 TCAATACACATCAGAATAGCAAGAAT 57.031 30.769 0.00 0.00 0.00 2.40
515 521 5.878669 GGTACAAATCCGATAAGGTCACTTT 59.121 40.000 0.00 0.00 41.99 2.66
523 529 6.346096 TCCGATAAGGTCACTTTTATCTTGG 58.654 40.000 9.46 5.99 41.99 3.61
545 551 5.163205 TGGTCATTCTCTGGAACTTTCAAGA 60.163 40.000 0.00 0.00 34.92 3.02
548 554 7.135467 GTCATTCTCTGGAACTTTCAAGAAAC 58.865 38.462 0.00 0.00 36.84 2.78
549 555 6.828273 TCATTCTCTGGAACTTTCAAGAAACA 59.172 34.615 0.00 0.00 36.84 2.83
550 556 6.683974 TTCTCTGGAACTTTCAAGAAACAG 57.316 37.500 0.00 5.15 36.84 3.16
551 557 5.745227 TCTCTGGAACTTTCAAGAAACAGT 58.255 37.500 9.35 0.00 36.84 3.55
552 558 6.180472 TCTCTGGAACTTTCAAGAAACAGTT 58.820 36.000 9.35 5.56 36.84 3.16
553 559 6.316390 TCTCTGGAACTTTCAAGAAACAGTTC 59.684 38.462 14.58 14.58 36.84 3.01
554 560 5.943416 TCTGGAACTTTCAAGAAACAGTTCA 59.057 36.000 20.41 11.17 37.28 3.18
555 561 6.432783 TCTGGAACTTTCAAGAAACAGTTCAA 59.567 34.615 20.41 13.25 37.28 2.69
556 562 6.620678 TGGAACTTTCAAGAAACAGTTCAAG 58.379 36.000 20.41 2.48 37.28 3.02
557 563 6.432783 TGGAACTTTCAAGAAACAGTTCAAGA 59.567 34.615 20.41 8.25 37.28 3.02
558 564 6.969473 GGAACTTTCAAGAAACAGTTCAAGAG 59.031 38.462 20.41 1.37 37.28 2.85
559 565 5.884771 ACTTTCAAGAAACAGTTCAAGAGC 58.115 37.500 0.00 0.00 36.09 4.09
560 566 4.900635 TTCAAGAAACAGTTCAAGAGCC 57.099 40.909 0.00 0.00 36.09 4.70
561 567 3.214328 TCAAGAAACAGTTCAAGAGCCC 58.786 45.455 0.00 0.00 36.09 5.19
562 568 2.951642 CAAGAAACAGTTCAAGAGCCCA 59.048 45.455 0.00 0.00 36.09 5.36
563 569 3.297134 AGAAACAGTTCAAGAGCCCAA 57.703 42.857 0.00 0.00 36.09 4.12
564 570 3.631250 AGAAACAGTTCAAGAGCCCAAA 58.369 40.909 0.00 0.00 36.09 3.28
565 571 4.023291 AGAAACAGTTCAAGAGCCCAAAA 58.977 39.130 0.00 0.00 36.09 2.44
566 572 4.466015 AGAAACAGTTCAAGAGCCCAAAAA 59.534 37.500 0.00 0.00 36.09 1.94
567 573 3.801114 ACAGTTCAAGAGCCCAAAAAC 57.199 42.857 0.00 0.00 0.00 2.43
568 574 3.365472 ACAGTTCAAGAGCCCAAAAACT 58.635 40.909 0.00 0.00 0.00 2.66
569 575 4.532834 ACAGTTCAAGAGCCCAAAAACTA 58.467 39.130 0.00 0.00 0.00 2.24
570 576 4.338400 ACAGTTCAAGAGCCCAAAAACTAC 59.662 41.667 0.00 0.00 0.00 2.73
571 577 4.580580 CAGTTCAAGAGCCCAAAAACTACT 59.419 41.667 0.00 0.00 0.00 2.57
572 578 5.763204 CAGTTCAAGAGCCCAAAAACTACTA 59.237 40.000 0.00 0.00 0.00 1.82
573 579 6.431234 CAGTTCAAGAGCCCAAAAACTACTAT 59.569 38.462 0.00 0.00 0.00 2.12
574 580 6.431234 AGTTCAAGAGCCCAAAAACTACTATG 59.569 38.462 0.00 0.00 0.00 2.23
575 581 4.700213 TCAAGAGCCCAAAAACTACTATGC 59.300 41.667 0.00 0.00 0.00 3.14
576 582 3.621558 AGAGCCCAAAAACTACTATGCC 58.378 45.455 0.00 0.00 0.00 4.40
577 583 3.267031 AGAGCCCAAAAACTACTATGCCT 59.733 43.478 0.00 0.00 0.00 4.75
578 584 3.621558 AGCCCAAAAACTACTATGCCTC 58.378 45.455 0.00 0.00 0.00 4.70
579 585 3.267031 AGCCCAAAAACTACTATGCCTCT 59.733 43.478 0.00 0.00 0.00 3.69
580 586 4.473559 AGCCCAAAAACTACTATGCCTCTA 59.526 41.667 0.00 0.00 0.00 2.43
581 587 4.575236 GCCCAAAAACTACTATGCCTCTAC 59.425 45.833 0.00 0.00 0.00 2.59
582 588 5.629366 GCCCAAAAACTACTATGCCTCTACT 60.629 44.000 0.00 0.00 0.00 2.57
583 589 6.407752 GCCCAAAAACTACTATGCCTCTACTA 60.408 42.308 0.00 0.00 0.00 1.82
584 590 7.210873 CCCAAAAACTACTATGCCTCTACTAG 58.789 42.308 0.00 0.00 0.00 2.57
598 604 5.308825 CCTCTACTAGGCACCAAATTATGG 58.691 45.833 0.00 5.44 46.87 2.74
599 605 5.071788 CCTCTACTAGGCACCAAATTATGGA 59.928 44.000 11.98 0.00 45.37 3.41
600 606 6.964523 CCTCTACTAGGCACCAAATTATGGAC 60.965 46.154 11.98 5.35 45.37 4.02
601 607 9.265434 CCTCTACTAGGCACCAAATTATGGACA 62.265 44.444 11.98 0.00 45.37 4.02
611 617 4.353737 CAAATTATGGACAAGACATGCCG 58.646 43.478 0.00 0.00 0.00 5.69
612 618 2.779755 TTATGGACAAGACATGCCGT 57.220 45.000 0.00 0.00 0.00 5.68
613 619 2.022764 TATGGACAAGACATGCCGTG 57.977 50.000 0.00 0.00 0.00 4.94
614 620 0.324614 ATGGACAAGACATGCCGTGA 59.675 50.000 1.40 0.00 0.00 4.35
615 621 0.320683 TGGACAAGACATGCCGTGAG 60.321 55.000 1.40 0.00 0.00 3.51
616 622 1.639298 GGACAAGACATGCCGTGAGC 61.639 60.000 1.40 0.00 44.14 4.26
625 631 2.355837 GCCGTGAGCGAACAGACA 60.356 61.111 0.00 0.00 41.33 3.41
626 632 1.954146 GCCGTGAGCGAACAGACAA 60.954 57.895 0.00 0.00 41.33 3.18
627 633 1.495584 GCCGTGAGCGAACAGACAAA 61.496 55.000 0.00 0.00 41.33 2.83
628 634 0.232303 CCGTGAGCGAACAGACAAAC 59.768 55.000 0.00 0.00 41.33 2.93
629 635 0.927537 CGTGAGCGAACAGACAAACA 59.072 50.000 0.00 0.00 41.33 2.83
630 636 1.332028 CGTGAGCGAACAGACAAACAC 60.332 52.381 0.00 0.00 41.33 3.32
631 637 1.933853 GTGAGCGAACAGACAAACACT 59.066 47.619 0.00 0.00 0.00 3.55
632 638 2.351726 GTGAGCGAACAGACAAACACTT 59.648 45.455 0.00 0.00 0.00 3.16
633 639 3.006940 TGAGCGAACAGACAAACACTTT 58.993 40.909 0.00 0.00 0.00 2.66
634 640 3.438781 TGAGCGAACAGACAAACACTTTT 59.561 39.130 0.00 0.00 0.00 2.27
635 641 4.083003 TGAGCGAACAGACAAACACTTTTT 60.083 37.500 0.00 0.00 0.00 1.94
671 677 8.906867 TCAAAATAGAAAATGAATAGCAGAGGG 58.093 33.333 0.00 0.00 0.00 4.30
672 678 6.890979 AATAGAAAATGAATAGCAGAGGGC 57.109 37.500 0.00 0.00 45.30 5.19
684 690 2.609046 AGAGGGCATCTGGTGGTAC 58.391 57.895 0.00 0.00 36.69 3.34
685 691 0.983378 AGAGGGCATCTGGTGGTACC 60.983 60.000 4.43 4.43 36.69 3.34
686 692 0.983378 GAGGGCATCTGGTGGTACCT 60.983 60.000 14.36 0.00 39.58 3.08
687 693 0.550147 AGGGCATCTGGTGGTACCTT 60.550 55.000 14.36 0.00 39.58 3.50
688 694 0.107165 GGGCATCTGGTGGTACCTTC 60.107 60.000 14.36 6.30 39.58 3.46
689 695 0.618458 GGCATCTGGTGGTACCTTCA 59.382 55.000 14.36 10.24 39.58 3.02
690 696 1.679032 GGCATCTGGTGGTACCTTCAC 60.679 57.143 14.36 2.57 39.58 3.18
705 711 2.831742 CACCTCCTACCGGCGCTA 60.832 66.667 7.64 0.00 0.00 4.26
720 726 0.661780 CGCTAGCATCGCTACCTGAC 60.662 60.000 16.45 0.00 40.44 3.51
725 731 0.312416 GCATCGCTACCTGACGATCT 59.688 55.000 0.00 0.00 45.35 2.75
739 745 3.883997 GATCTGATCGGCTCTCACC 57.116 57.895 1.26 0.00 0.00 4.02
779 785 2.659428 GACGAGCTAGGGTTAGGGTAA 58.341 52.381 0.00 0.00 0.00 2.85
780 786 2.360483 GACGAGCTAGGGTTAGGGTAAC 59.640 54.545 0.00 0.00 37.94 2.50
790 797 0.822164 TTAGGGTAACGCTGAGCTCC 59.178 55.000 12.15 0.00 37.60 4.70
809 816 1.745653 CCTGAAATCCTCGGGCTTTTC 59.254 52.381 2.23 2.23 43.90 2.29
811 818 2.680339 CTGAAATCCTCGGGCTTTTCTC 59.320 50.000 8.92 0.00 30.97 2.87
826 833 3.961480 TTTCTCTGCGGAAATCTGAGA 57.039 42.857 0.00 0.00 36.95 3.27
834 841 5.046910 TGCGGAAATCTGAGACAAAAATC 57.953 39.130 0.00 0.00 0.00 2.17
840 847 4.826274 ATCTGAGACAAAAATCGAGGGA 57.174 40.909 0.00 0.00 0.00 4.20
842 849 3.832490 TCTGAGACAAAAATCGAGGGAGA 59.168 43.478 0.00 0.00 0.00 3.71
843 850 4.283467 TCTGAGACAAAAATCGAGGGAGAA 59.717 41.667 0.00 0.00 0.00 2.87
844 851 4.968259 TGAGACAAAAATCGAGGGAGAAA 58.032 39.130 0.00 0.00 0.00 2.52
871 878 2.738521 CCGTCCTGTGCTGGAACG 60.739 66.667 0.00 6.34 37.93 3.95
885 892 1.545706 GGAACGAGAGGCCCAAGAGT 61.546 60.000 0.00 0.00 0.00 3.24
897 904 4.379243 AAGAGTCCACCTGCCGCG 62.379 66.667 0.00 0.00 0.00 6.46
912 919 3.034343 GCGTTCGGCCCGTATAGC 61.034 66.667 1.63 0.00 34.80 2.97
913 920 2.726274 CGTTCGGCCCGTATAGCT 59.274 61.111 1.63 0.00 0.00 3.32
943 953 4.123545 GGGCCTGCCGTACCCATT 62.124 66.667 0.84 0.00 43.64 3.16
944 954 2.748513 GGGCCTGCCGTACCCATTA 61.749 63.158 0.84 0.00 43.64 1.90
945 955 1.525306 GGCCTGCCGTACCCATTAC 60.525 63.158 0.00 0.00 0.00 1.89
946 956 1.525306 GCCTGCCGTACCCATTACC 60.525 63.158 0.00 0.00 0.00 2.85
947 957 1.147600 CCTGCCGTACCCATTACCC 59.852 63.158 0.00 0.00 0.00 3.69
948 958 1.628238 CCTGCCGTACCCATTACCCA 61.628 60.000 0.00 0.00 0.00 4.51
949 959 0.253610 CTGCCGTACCCATTACCCAA 59.746 55.000 0.00 0.00 0.00 4.12
950 960 0.697079 TGCCGTACCCATTACCCAAA 59.303 50.000 0.00 0.00 0.00 3.28
1116 1141 2.043852 GCTCTCCTCCGTCCCTCA 60.044 66.667 0.00 0.00 0.00 3.86
1170 1195 3.157949 CCCCGCCTCTTCTCCTCC 61.158 72.222 0.00 0.00 0.00 4.30
1217 1264 3.095347 GCCGATCCTTCGCTTCCCT 62.095 63.158 0.00 0.00 44.12 4.20
1221 1268 0.250513 GATCCTTCGCTTCCCTGTGT 59.749 55.000 0.00 0.00 0.00 3.72
1227 1274 2.883828 CGCTTCCCTGTGTCCCTGT 61.884 63.158 0.00 0.00 0.00 4.00
1228 1275 1.302832 GCTTCCCTGTGTCCCTGTG 60.303 63.158 0.00 0.00 0.00 3.66
1291 1338 4.129737 ATGGTGGTCGTCGGCTCG 62.130 66.667 0.00 0.00 0.00 5.03
1359 1406 2.956077 ATCCCCTCCCTTCTCGCTCC 62.956 65.000 0.00 0.00 0.00 4.70
1360 1407 2.364317 CCCTCCCTTCTCGCTCCA 60.364 66.667 0.00 0.00 0.00 3.86
1361 1408 2.430610 CCCTCCCTTCTCGCTCCAG 61.431 68.421 0.00 0.00 0.00 3.86
1362 1409 2.498726 CTCCCTTCTCGCTCCAGC 59.501 66.667 0.00 0.00 37.78 4.85
1363 1410 2.038007 TCCCTTCTCGCTCCAGCT 59.962 61.111 0.00 0.00 39.32 4.24
1364 1411 1.610673 TCCCTTCTCGCTCCAGCTT 60.611 57.895 0.00 0.00 39.32 3.74
1365 1412 1.194781 TCCCTTCTCGCTCCAGCTTT 61.195 55.000 0.00 0.00 39.32 3.51
1366 1413 0.322008 CCCTTCTCGCTCCAGCTTTT 60.322 55.000 0.00 0.00 39.32 2.27
1367 1414 1.082690 CCTTCTCGCTCCAGCTTTTC 58.917 55.000 0.00 0.00 39.32 2.29
1368 1415 1.082690 CTTCTCGCTCCAGCTTTTCC 58.917 55.000 0.00 0.00 39.32 3.13
1369 1416 0.396435 TTCTCGCTCCAGCTTTTCCA 59.604 50.000 0.00 0.00 39.32 3.53
1370 1417 0.320771 TCTCGCTCCAGCTTTTCCAC 60.321 55.000 0.00 0.00 39.32 4.02
1371 1418 1.301677 CTCGCTCCAGCTTTTCCACC 61.302 60.000 0.00 0.00 39.32 4.61
1372 1419 2.680913 CGCTCCAGCTTTTCCACCG 61.681 63.158 0.00 0.00 39.32 4.94
1373 1420 1.302511 GCTCCAGCTTTTCCACCGA 60.303 57.895 0.00 0.00 38.21 4.69
1374 1421 0.678048 GCTCCAGCTTTTCCACCGAT 60.678 55.000 0.00 0.00 38.21 4.18
1375 1422 1.826385 CTCCAGCTTTTCCACCGATT 58.174 50.000 0.00 0.00 0.00 3.34
1376 1423 1.740025 CTCCAGCTTTTCCACCGATTC 59.260 52.381 0.00 0.00 0.00 2.52
1377 1424 1.351017 TCCAGCTTTTCCACCGATTCT 59.649 47.619 0.00 0.00 0.00 2.40
1378 1425 2.162681 CCAGCTTTTCCACCGATTCTT 58.837 47.619 0.00 0.00 0.00 2.52
1379 1426 2.162408 CCAGCTTTTCCACCGATTCTTC 59.838 50.000 0.00 0.00 0.00 2.87
1380 1427 2.813754 CAGCTTTTCCACCGATTCTTCA 59.186 45.455 0.00 0.00 0.00 3.02
1381 1428 2.814336 AGCTTTTCCACCGATTCTTCAC 59.186 45.455 0.00 0.00 0.00 3.18
1382 1429 2.552315 GCTTTTCCACCGATTCTTCACA 59.448 45.455 0.00 0.00 0.00 3.58
1383 1430 3.609409 GCTTTTCCACCGATTCTTCACAC 60.609 47.826 0.00 0.00 0.00 3.82
1384 1431 3.485463 TTTCCACCGATTCTTCACACT 57.515 42.857 0.00 0.00 0.00 3.55
1385 1432 2.455674 TCCACCGATTCTTCACACTG 57.544 50.000 0.00 0.00 0.00 3.66
1386 1433 1.691976 TCCACCGATTCTTCACACTGT 59.308 47.619 0.00 0.00 0.00 3.55
1387 1434 2.104111 TCCACCGATTCTTCACACTGTT 59.896 45.455 0.00 0.00 0.00 3.16
1388 1435 2.224079 CCACCGATTCTTCACACTGTTG 59.776 50.000 0.00 0.00 0.00 3.33
1389 1436 2.872245 CACCGATTCTTCACACTGTTGT 59.128 45.455 0.00 0.00 35.84 3.32
1390 1437 3.312421 CACCGATTCTTCACACTGTTGTT 59.688 43.478 0.00 0.00 31.66 2.83
1391 1438 3.312421 ACCGATTCTTCACACTGTTGTTG 59.688 43.478 0.00 0.00 31.66 3.33
1392 1439 3.303990 CCGATTCTTCACACTGTTGTTGG 60.304 47.826 0.00 0.00 31.66 3.77
1439 1510 2.571212 TCTCACATTGTTGGTGTGGTC 58.429 47.619 6.44 0.00 45.34 4.02
1442 1513 1.285641 CATTGTTGGTGTGGTCGCC 59.714 57.895 0.00 0.00 43.87 5.54
1522 1593 3.179265 CGTGTAAGTGCCGCCTCG 61.179 66.667 0.00 0.00 0.00 4.63
1547 1618 2.839425 CCATGAATTGGGATTTGGGTGT 59.161 45.455 0.00 0.00 42.33 4.16
1560 1631 0.544357 TGGGTGTGTGACTAGAGGGG 60.544 60.000 0.00 0.00 0.00 4.79
1611 1682 2.182842 GGCGATGGCACCTGTGATC 61.183 63.158 1.01 0.00 42.47 2.92
1644 1715 1.209621 GGCAGTACCCCAAGATACCA 58.790 55.000 0.00 0.00 0.00 3.25
1653 1724 3.775316 ACCCCAAGATACCAGTCTACAAG 59.225 47.826 0.00 0.00 0.00 3.16
1675 1746 1.202371 TCGACATCGACATGGTAAGCC 60.202 52.381 0.00 0.00 44.22 4.35
1677 1748 2.993464 CGACATCGACATGGTAAGCCAA 60.993 50.000 0.00 0.00 44.98 4.52
1714 1785 3.060003 GCTGTAATGTTCATCTGCTAGCG 60.060 47.826 10.77 5.22 0.00 4.26
1728 1799 5.368145 TCTGCTAGCGAATTCCATGTTAAT 58.632 37.500 10.77 0.00 0.00 1.40
1733 1804 5.643379 AGCGAATTCCATGTTAATGTGTT 57.357 34.783 0.00 0.00 31.27 3.32
1765 1836 7.415592 TGGATATGAATGGTAAATTTGCACA 57.584 32.000 8.59 4.54 0.00 4.57
1834 1905 3.542648 AGATCATTGCATCACACTCCTG 58.457 45.455 0.00 0.00 0.00 3.86
1882 1953 5.778459 GTAAACCACGACGTTTGAAATTC 57.222 39.130 0.00 0.00 36.63 2.17
1938 2010 6.929049 GCCTGTTAAAATGAAGCCTTAAGTTT 59.071 34.615 0.97 0.00 0.00 2.66
2026 2099 5.227569 TCACTCAGAGCCACATTTTCTTA 57.772 39.130 0.00 0.00 0.00 2.10
2036 2109 5.539955 AGCCACATTTTCTTATTCACTTGGT 59.460 36.000 0.00 0.00 0.00 3.67
2046 2119 7.969536 TCTTATTCACTTGGTTCTCTTCTTG 57.030 36.000 0.00 0.00 0.00 3.02
2060 2133 5.555017 TCTCTTCTTGGGAGTTTGAGAATG 58.445 41.667 0.00 0.00 33.06 2.67
2117 2190 6.819397 AAAAGTTGCTTCATAACTAGTCCC 57.181 37.500 0.00 0.00 37.39 4.46
2120 2193 3.906720 TGCTTCATAACTAGTCCCACC 57.093 47.619 0.00 0.00 0.00 4.61
2140 2213 6.463897 CCCACCGTTAGTTGGATATTCTGTAT 60.464 42.308 0.00 0.00 32.81 2.29
2152 2225 8.985315 TGGATATTCTGTATGCTTGATCTTTT 57.015 30.769 0.00 0.00 0.00 2.27
2167 2240 7.201418 GCTTGATCTTTTCAAAAATCTAGCAGC 60.201 37.037 21.71 13.34 43.64 5.25
2204 2277 5.648092 GTGCTAAGTCCTGATTGTTTGGTAT 59.352 40.000 0.00 0.00 0.00 2.73
2336 2409 5.368230 TGATGTGGTCATAAGGCCAGTATAA 59.632 40.000 5.01 0.00 35.14 0.98
2393 2967 2.514803 AGGTTGGTGGAATTGCACTAC 58.485 47.619 26.43 22.57 0.00 2.73
2468 3042 6.342338 AGTTGTACTCTGTTAGGTTGGTAG 57.658 41.667 0.00 0.00 0.00 3.18
2469 3043 5.837438 AGTTGTACTCTGTTAGGTTGGTAGT 59.163 40.000 0.00 0.00 0.00 2.73
2470 3044 7.006509 AGTTGTACTCTGTTAGGTTGGTAGTA 58.993 38.462 0.00 0.00 0.00 1.82
2530 3104 2.178912 TACGAAGGTTGAAGCTTGGG 57.821 50.000 20.21 12.08 35.86 4.12
2554 3128 6.258947 GGATAACTCAGAGCCACAGTATTTTC 59.741 42.308 0.00 0.00 0.00 2.29
2620 3194 2.638480 TGCTTTGTAACTGGTCTGCT 57.362 45.000 0.00 0.00 0.00 4.24
2705 3279 2.391616 TGCAGTATCACTTGCCTGAG 57.608 50.000 0.00 0.00 0.00 3.35
2747 3321 4.377897 GCATGTACCCAGTATAGACCAAC 58.622 47.826 0.00 0.00 0.00 3.77
2836 3410 9.371136 TGTTTATAGTAAGCAGATTGAGTTGAG 57.629 33.333 0.00 0.00 0.00 3.02
2865 3439 3.037431 CATACCTGCATAGTGCTCTCC 57.963 52.381 3.41 0.00 45.31 3.71
2873 3447 3.384789 TGCATAGTGCTCTCCGTAGAAAT 59.615 43.478 3.41 0.00 45.31 2.17
2929 3503 5.741011 TGTTCAGTTCAGTGGTTTTACTCT 58.259 37.500 0.00 0.00 0.00 3.24
2930 3504 6.880484 TGTTCAGTTCAGTGGTTTTACTCTA 58.120 36.000 0.00 0.00 0.00 2.43
2939 3515 8.547967 TCAGTGGTTTTACTCTATTGTGAATC 57.452 34.615 0.00 0.00 0.00 2.52
2956 3532 5.008118 TGTGAATCTGTGATTGCGTGTAAAA 59.992 36.000 0.00 0.00 0.00 1.52
2969 3545 3.733727 GCGTGTAAAAGGGACAAATGTTG 59.266 43.478 0.00 0.00 0.00 3.33
3076 3652 1.203038 TGACCATGCAAGGTGGAATGT 60.203 47.619 20.20 0.00 43.38 2.71
3120 3696 7.339212 AGTCATTGCTGTTGTGGCTATATTTAA 59.661 33.333 0.00 0.00 0.00 1.52
3122 3698 8.136800 TCATTGCTGTTGTGGCTATATTTAATG 58.863 33.333 0.00 0.00 0.00 1.90
3145 3721 0.253044 TCAACAGTATGCCTGCTCCC 59.747 55.000 0.00 0.00 45.68 4.30
3421 3998 3.242706 TGCATGTTCGTTGAGTTCACTTG 60.243 43.478 0.00 0.00 0.00 3.16
3480 4058 5.747675 CAGCATGTTTGTGTATTTGTGTTCA 59.252 36.000 0.00 0.00 0.00 3.18
3503 4081 2.280628 CCAACCTTCATCCTAACTCGC 58.719 52.381 0.00 0.00 0.00 5.03
3657 4240 6.844097 AGTAAGATCTTTCTTCTCGTCCTT 57.156 37.500 14.36 0.00 41.36 3.36
3719 4302 2.141517 GAATGATCTCATCTGCGGTGG 58.858 52.381 0.00 0.00 35.10 4.61
3722 4305 0.599728 GATCTCATCTGCGGTGGAGC 60.600 60.000 10.21 0.94 37.71 4.70
3822 4405 7.716998 CCTATATTAAACATGTCTCCAGCACTT 59.283 37.037 0.00 0.00 0.00 3.16
3823 4406 5.633830 ATTAAACATGTCTCCAGCACTTG 57.366 39.130 0.00 0.00 0.00 3.16
3833 4416 1.549203 CCAGCACTTGGCCATTTACT 58.451 50.000 6.09 0.00 46.50 2.24
3842 4425 5.348451 CACTTGGCCATTTACTTTGTATTGC 59.652 40.000 6.09 0.00 0.00 3.56
3849 4432 6.035843 CCATTTACTTTGTATTGCGATGCTT 58.964 36.000 3.52 0.00 0.00 3.91
3850 4433 6.020440 CCATTTACTTTGTATTGCGATGCTTG 60.020 38.462 3.52 0.00 0.00 4.01
3859 4442 4.700268 ATTGCGATGCTTGTGACATTAA 57.300 36.364 0.00 0.00 0.00 1.40
3930 4513 3.914426 ACAGTGAAGTTGACTTGGAGT 57.086 42.857 0.30 0.00 36.11 3.85
3960 4543 4.980434 CAGTTCTTTTGCATGAAGAGTTGG 59.020 41.667 11.45 2.83 34.84 3.77
3964 4547 4.758674 TCTTTTGCATGAAGAGTTGGAGAG 59.241 41.667 8.50 0.00 0.00 3.20
4040 4626 7.107639 TCTTGTTTCGATATCTGGATACACA 57.892 36.000 0.34 0.00 46.17 3.72
4041 4627 6.978659 TCTTGTTTCGATATCTGGATACACAC 59.021 38.462 0.34 0.00 46.17 3.82
4077 4663 4.494484 TCGATATCTGGATTTATGCCACG 58.506 43.478 0.34 0.00 0.00 4.94
4079 4665 2.645838 ATCTGGATTTATGCCACGCT 57.354 45.000 0.00 0.00 0.00 5.07
4133 4719 7.014326 ACGTCTATTTAGGAGCATCTGTGATTA 59.986 37.037 0.00 0.00 33.73 1.75
4165 4751 2.906182 TATTGTGGCGCTGCTCTCCG 62.906 60.000 7.64 0.00 0.00 4.63
4181 4767 1.221840 CCGTCTCTGATGGTTGGGG 59.778 63.158 0.00 0.00 34.27 4.96
4187 4773 1.139498 TCTGATGGTTGGGGCCTGAA 61.139 55.000 0.84 0.00 0.00 3.02
4208 4794 2.432628 CGTGTGGTCTCGGCCTTC 60.433 66.667 0.00 0.00 0.00 3.46
4251 4837 5.146010 ACTGTCATGTTCTTCTCTCCTTC 57.854 43.478 0.00 0.00 0.00 3.46
4278 4864 7.817962 GTCTTCCTTACAAGTAGTTTATGCTGA 59.182 37.037 0.00 0.00 0.00 4.26
4363 4963 5.539207 CAACGAAACAGCTCTTACGATAAC 58.461 41.667 6.85 0.00 0.00 1.89
4364 4964 4.801891 ACGAAACAGCTCTTACGATAACA 58.198 39.130 6.85 0.00 0.00 2.41
4395 5011 3.644884 AGATTCAAGTCAAGACGTCGT 57.355 42.857 10.46 3.44 36.20 4.34
4396 5012 4.761235 AGATTCAAGTCAAGACGTCGTA 57.239 40.909 10.46 0.00 36.20 3.43
4397 5013 5.117355 AGATTCAAGTCAAGACGTCGTAA 57.883 39.130 10.46 0.00 36.20 3.18
4398 5014 5.710984 AGATTCAAGTCAAGACGTCGTAAT 58.289 37.500 10.46 2.25 36.20 1.89
4399 5015 6.849502 AGATTCAAGTCAAGACGTCGTAATA 58.150 36.000 10.46 0.00 36.20 0.98
4400 5016 6.746364 AGATTCAAGTCAAGACGTCGTAATAC 59.254 38.462 10.46 6.33 36.20 1.89
4401 5017 5.618056 TCAAGTCAAGACGTCGTAATACT 57.382 39.130 10.46 8.49 36.20 2.12
4402 5018 6.005583 TCAAGTCAAGACGTCGTAATACTT 57.994 37.500 10.46 13.61 36.20 2.24
4403 5019 5.854866 TCAAGTCAAGACGTCGTAATACTTG 59.145 40.000 27.88 27.88 42.33 3.16
4404 5020 5.368256 AGTCAAGACGTCGTAATACTTGT 57.632 39.130 18.52 4.09 38.94 3.16
4405 5021 5.152097 AGTCAAGACGTCGTAATACTTGTG 58.848 41.667 18.52 2.23 38.94 3.33
4406 5022 5.049198 AGTCAAGACGTCGTAATACTTGTGA 60.049 40.000 18.52 4.13 38.94 3.58
4407 5023 5.798934 GTCAAGACGTCGTAATACTTGTGAT 59.201 40.000 18.52 0.00 38.94 3.06
4408 5024 6.021626 GTCAAGACGTCGTAATACTTGTGATC 60.022 42.308 18.52 8.81 38.94 2.92
4409 5025 5.556355 AGACGTCGTAATACTTGTGATCA 57.444 39.130 10.46 0.00 0.00 2.92
4410 5026 5.570344 AGACGTCGTAATACTTGTGATCAG 58.430 41.667 10.46 0.00 0.00 2.90
4431 5047 1.742761 ATCTGCATTGACGTGGAAGG 58.257 50.000 0.00 0.00 0.00 3.46
4478 5482 8.739649 TTTTTGAAACAAAGGCAAAAGATTTG 57.260 26.923 0.00 0.00 41.02 2.32
4479 5483 7.678947 TTTGAAACAAAGGCAAAAGATTTGA 57.321 28.000 6.99 0.00 37.37 2.69
4480 5484 6.660887 TGAAACAAAGGCAAAAGATTTGAC 57.339 33.333 6.99 3.80 37.37 3.18
4481 5485 6.405538 TGAAACAAAGGCAAAAGATTTGACT 58.594 32.000 5.37 5.37 40.01 3.41
4482 5486 6.534793 TGAAACAAAGGCAAAAGATTTGACTC 59.465 34.615 11.35 0.00 36.61 3.36
4483 5487 4.610945 ACAAAGGCAAAAGATTTGACTCG 58.389 39.130 11.35 8.61 36.61 4.18
4484 5488 4.097892 ACAAAGGCAAAAGATTTGACTCGT 59.902 37.500 11.35 9.16 36.61 4.18
4485 5489 4.489679 AAGGCAAAAGATTTGACTCGTC 57.510 40.909 11.35 0.00 36.61 4.20
4486 5490 2.480419 AGGCAAAAGATTTGACTCGTCG 59.520 45.455 5.37 0.00 30.52 5.12
4487 5491 2.478894 GGCAAAAGATTTGACTCGTCGA 59.521 45.455 6.99 0.00 0.00 4.20
4488 5492 3.125316 GGCAAAAGATTTGACTCGTCGAT 59.875 43.478 6.99 0.00 0.00 3.59
4489 5493 4.378459 GGCAAAAGATTTGACTCGTCGATT 60.378 41.667 6.99 0.00 0.00 3.34
4490 5494 5.163893 GGCAAAAGATTTGACTCGTCGATTA 60.164 40.000 6.99 0.00 0.00 1.75
4491 5495 6.304126 GCAAAAGATTTGACTCGTCGATTAA 58.696 36.000 6.99 0.00 0.00 1.40
4492 5496 6.462949 GCAAAAGATTTGACTCGTCGATTAAG 59.537 38.462 6.99 0.00 0.00 1.85
4493 5497 7.510630 CAAAAGATTTGACTCGTCGATTAAGT 58.489 34.615 0.00 0.00 0.00 2.24
4494 5498 8.644619 CAAAAGATTTGACTCGTCGATTAAGTA 58.355 33.333 0.00 0.00 0.00 2.24
4495 5499 8.752766 AAAGATTTGACTCGTCGATTAAGTAA 57.247 30.769 0.00 0.00 0.00 2.24
4496 5500 7.972623 AGATTTGACTCGTCGATTAAGTAAG 57.027 36.000 0.00 0.00 0.00 2.34
4497 5501 7.759465 AGATTTGACTCGTCGATTAAGTAAGA 58.241 34.615 0.00 0.00 0.00 2.10
4498 5502 8.242053 AGATTTGACTCGTCGATTAAGTAAGAA 58.758 33.333 0.00 0.00 0.00 2.52
4499 5503 7.792383 TTTGACTCGTCGATTAAGTAAGAAG 57.208 36.000 0.00 0.00 0.00 2.85
4500 5504 6.732531 TGACTCGTCGATTAAGTAAGAAGA 57.267 37.500 0.00 0.00 0.00 2.87
4501 5505 7.137490 TGACTCGTCGATTAAGTAAGAAGAA 57.863 36.000 0.00 0.00 0.00 2.52
4502 5506 7.242079 TGACTCGTCGATTAAGTAAGAAGAAG 58.758 38.462 0.00 0.00 0.00 2.85
4503 5507 7.118825 TGACTCGTCGATTAAGTAAGAAGAAGA 59.881 37.037 0.00 0.00 0.00 2.87
4504 5508 7.465989 ACTCGTCGATTAAGTAAGAAGAAGAG 58.534 38.462 0.00 4.48 38.22 2.85
4505 5509 7.333921 ACTCGTCGATTAAGTAAGAAGAAGAGA 59.666 37.037 11.19 0.00 36.66 3.10
4506 5510 8.037382 TCGTCGATTAAGTAAGAAGAAGAGAA 57.963 34.615 0.00 0.00 0.00 2.87
4507 5511 8.675504 TCGTCGATTAAGTAAGAAGAAGAGAAT 58.324 33.333 0.00 0.00 0.00 2.40
4508 5512 9.291664 CGTCGATTAAGTAAGAAGAAGAGAATT 57.708 33.333 0.00 0.00 0.00 2.17
4510 5514 9.088512 TCGATTAAGTAAGAAGAAGAGAATTGC 57.911 33.333 0.00 0.00 0.00 3.56
4511 5515 8.331742 CGATTAAGTAAGAAGAAGAGAATTGCC 58.668 37.037 0.00 0.00 0.00 4.52
4512 5516 7.923414 TTAAGTAAGAAGAAGAGAATTGCCC 57.077 36.000 0.00 0.00 0.00 5.36
4513 5517 5.505181 AGTAAGAAGAAGAGAATTGCCCA 57.495 39.130 0.00 0.00 0.00 5.36
4514 5518 5.495640 AGTAAGAAGAAGAGAATTGCCCAG 58.504 41.667 0.00 0.00 0.00 4.45
4515 5519 4.379302 AAGAAGAAGAGAATTGCCCAGT 57.621 40.909 0.00 0.00 0.00 4.00
4516 5520 4.379302 AGAAGAAGAGAATTGCCCAGTT 57.621 40.909 0.00 0.00 0.00 3.16
4517 5521 5.505181 AGAAGAAGAGAATTGCCCAGTTA 57.495 39.130 0.00 0.00 0.00 2.24
4518 5522 5.880901 AGAAGAAGAGAATTGCCCAGTTAA 58.119 37.500 0.00 0.00 0.00 2.01
4519 5523 5.707764 AGAAGAAGAGAATTGCCCAGTTAAC 59.292 40.000 0.00 0.00 0.00 2.01
4520 5524 5.248380 AGAAGAGAATTGCCCAGTTAACT 57.752 39.130 1.12 1.12 0.00 2.24
4521 5525 6.374417 AGAAGAGAATTGCCCAGTTAACTA 57.626 37.500 8.04 0.00 0.00 2.24
4522 5526 6.779860 AGAAGAGAATTGCCCAGTTAACTAA 58.220 36.000 8.04 0.00 0.00 2.24
4523 5527 6.655425 AGAAGAGAATTGCCCAGTTAACTAAC 59.345 38.462 8.04 1.35 36.46 2.34
4524 5528 4.935808 AGAGAATTGCCCAGTTAACTAACG 59.064 41.667 8.04 0.00 40.96 3.18
4525 5529 4.901868 AGAATTGCCCAGTTAACTAACGA 58.098 39.130 8.04 1.13 40.96 3.85
4526 5530 5.310451 AGAATTGCCCAGTTAACTAACGAA 58.690 37.500 8.04 0.07 40.96 3.85
4527 5531 5.766174 AGAATTGCCCAGTTAACTAACGAAA 59.234 36.000 8.04 0.00 40.96 3.46
4528 5532 6.263617 AGAATTGCCCAGTTAACTAACGAAAA 59.736 34.615 8.04 0.00 40.96 2.29
4529 5533 5.831702 TTGCCCAGTTAACTAACGAAAAA 57.168 34.783 8.04 0.00 40.96 1.94
4530 5534 5.172460 TGCCCAGTTAACTAACGAAAAAC 57.828 39.130 8.04 0.00 40.96 2.43
4531 5535 4.036616 TGCCCAGTTAACTAACGAAAAACC 59.963 41.667 8.04 0.00 40.96 3.27
4532 5536 4.036616 GCCCAGTTAACTAACGAAAAACCA 59.963 41.667 8.04 0.00 40.96 3.67
4533 5537 5.754778 CCCAGTTAACTAACGAAAAACCAG 58.245 41.667 8.04 0.00 40.96 4.00
4534 5538 5.528320 CCCAGTTAACTAACGAAAAACCAGA 59.472 40.000 8.04 0.00 40.96 3.86
4535 5539 6.206048 CCCAGTTAACTAACGAAAAACCAGAT 59.794 38.462 8.04 0.00 40.96 2.90
4536 5540 7.388500 CCCAGTTAACTAACGAAAAACCAGATA 59.612 37.037 8.04 0.00 40.96 1.98
4537 5541 8.776470 CCAGTTAACTAACGAAAAACCAGATAA 58.224 33.333 8.04 0.00 40.96 1.75
4543 5547 9.511144 AACTAACGAAAAACCAGATAAAAACTG 57.489 29.630 0.00 0.00 35.43 3.16
4544 5548 8.895737 ACTAACGAAAAACCAGATAAAAACTGA 58.104 29.630 0.00 0.00 37.54 3.41
4545 5549 9.893305 CTAACGAAAAACCAGATAAAAACTGAT 57.107 29.630 0.00 0.00 37.54 2.90
4547 5551 9.673454 AACGAAAAACCAGATAAAAACTGATAC 57.327 29.630 0.00 0.00 37.54 2.24
4548 5552 8.842280 ACGAAAAACCAGATAAAAACTGATACA 58.158 29.630 0.00 0.00 37.54 2.29
4549 5553 9.672086 CGAAAAACCAGATAAAAACTGATACAA 57.328 29.630 0.00 0.00 37.54 2.41
4555 5559 9.614792 ACCAGATAAAAACTGATACAATAGACC 57.385 33.333 0.00 0.00 37.54 3.85
4556 5560 9.613428 CCAGATAAAAACTGATACAATAGACCA 57.387 33.333 0.00 0.00 37.54 4.02
4562 5566 7.658179 AAACTGATACAATAGACCATATGCG 57.342 36.000 0.00 0.00 0.00 4.73
4563 5567 5.724328 ACTGATACAATAGACCATATGCGG 58.276 41.667 0.00 0.00 0.00 5.69
4564 5568 5.480422 ACTGATACAATAGACCATATGCGGA 59.520 40.000 0.00 0.00 0.00 5.54
4565 5569 5.720202 TGATACAATAGACCATATGCGGAC 58.280 41.667 0.00 0.00 0.00 4.79
4566 5570 5.480422 TGATACAATAGACCATATGCGGACT 59.520 40.000 0.00 0.00 35.21 3.85
4567 5571 6.661805 TGATACAATAGACCATATGCGGACTA 59.338 38.462 0.00 0.00 37.63 2.59
4568 5572 5.135508 ACAATAGACCATATGCGGACTAC 57.864 43.478 0.00 0.00 36.38 2.73
4569 5573 4.833380 ACAATAGACCATATGCGGACTACT 59.167 41.667 0.00 0.00 36.38 2.57
4570 5574 5.047943 ACAATAGACCATATGCGGACTACTC 60.048 44.000 0.00 0.00 36.38 2.59
4571 5575 1.880675 AGACCATATGCGGACTACTCG 59.119 52.381 0.00 0.00 28.76 4.18
4582 5586 4.352600 CGGACTACTCGCTAAGAAAGAA 57.647 45.455 0.00 0.00 0.00 2.52
4583 5587 4.730657 CGGACTACTCGCTAAGAAAGAAA 58.269 43.478 0.00 0.00 0.00 2.52
4584 5588 4.558080 CGGACTACTCGCTAAGAAAGAAAC 59.442 45.833 0.00 0.00 0.00 2.78
4585 5589 5.619533 CGGACTACTCGCTAAGAAAGAAACT 60.620 44.000 0.00 0.00 0.00 2.66
4586 5590 6.157904 GGACTACTCGCTAAGAAAGAAACTT 58.842 40.000 0.00 0.00 0.00 2.66
4587 5591 6.308524 GGACTACTCGCTAAGAAAGAAACTTC 59.691 42.308 0.00 0.00 0.00 3.01
4588 5592 6.746120 ACTACTCGCTAAGAAAGAAACTTCA 58.254 36.000 0.00 0.00 0.00 3.02
4589 5593 7.379750 ACTACTCGCTAAGAAAGAAACTTCAT 58.620 34.615 0.00 0.00 0.00 2.57
4590 5594 6.473397 ACTCGCTAAGAAAGAAACTTCATG 57.527 37.500 0.00 0.00 0.00 3.07
4591 5595 6.223852 ACTCGCTAAGAAAGAAACTTCATGA 58.776 36.000 0.00 0.00 0.00 3.07
4592 5596 6.146347 ACTCGCTAAGAAAGAAACTTCATGAC 59.854 38.462 0.00 0.00 0.00 3.06
4593 5597 5.408604 TCGCTAAGAAAGAAACTTCATGACC 59.591 40.000 0.00 0.00 0.00 4.02
4594 5598 5.179368 CGCTAAGAAAGAAACTTCATGACCA 59.821 40.000 0.00 0.00 0.00 4.02
4595 5599 6.374578 GCTAAGAAAGAAACTTCATGACCAC 58.625 40.000 0.00 0.00 0.00 4.16
4596 5600 6.017109 GCTAAGAAAGAAACTTCATGACCACA 60.017 38.462 0.00 0.00 0.00 4.17
4597 5601 5.757850 AGAAAGAAACTTCATGACCACAC 57.242 39.130 0.00 0.00 0.00 3.82
4598 5602 5.440610 AGAAAGAAACTTCATGACCACACT 58.559 37.500 0.00 0.00 0.00 3.55
4599 5603 5.297776 AGAAAGAAACTTCATGACCACACTG 59.702 40.000 0.00 0.00 0.00 3.66
4600 5604 4.156455 AGAAACTTCATGACCACACTGT 57.844 40.909 0.00 0.00 0.00 3.55
4601 5605 4.130118 AGAAACTTCATGACCACACTGTC 58.870 43.478 0.00 0.00 35.77 3.51
4607 5611 3.659850 TGACCACACTGTCAACTCG 57.340 52.632 0.00 0.00 42.06 4.18
4608 5612 1.107945 TGACCACACTGTCAACTCGA 58.892 50.000 0.00 0.00 42.06 4.04
4609 5613 1.202371 TGACCACACTGTCAACTCGAC 60.202 52.381 0.00 0.00 42.06 4.20
4623 5627 7.576750 GTCAACTCGACAAACATACATAAGA 57.423 36.000 0.00 0.00 44.69 2.10
4624 5628 7.445836 GTCAACTCGACAAACATACATAAGAC 58.554 38.462 0.00 0.00 44.69 3.01
4625 5629 6.307077 TCAACTCGACAAACATACATAAGACG 59.693 38.462 0.00 0.00 0.00 4.18
4626 5630 5.946298 ACTCGACAAACATACATAAGACGA 58.054 37.500 0.00 0.00 0.00 4.20
4627 5631 6.384224 ACTCGACAAACATACATAAGACGAA 58.616 36.000 0.00 0.00 0.00 3.85
4628 5632 6.864685 ACTCGACAAACATACATAAGACGAAA 59.135 34.615 0.00 0.00 0.00 3.46
4629 5633 7.041187 TCGACAAACATACATAAGACGAAAC 57.959 36.000 0.00 0.00 0.00 2.78
4630 5634 6.641723 TCGACAAACATACATAAGACGAAACA 59.358 34.615 0.00 0.00 0.00 2.83
4631 5635 7.169476 TCGACAAACATACATAAGACGAAACAA 59.831 33.333 0.00 0.00 0.00 2.83
4632 5636 7.265495 CGACAAACATACATAAGACGAAACAAC 59.735 37.037 0.00 0.00 0.00 3.32
4633 5637 7.357303 ACAAACATACATAAGACGAAACAACC 58.643 34.615 0.00 0.00 0.00 3.77
4657 5666 4.331968 TGATTGGTGGCTACGAAAGAAAT 58.668 39.130 1.08 0.00 0.00 2.17
4694 5718 3.057315 TGCAAATCTTTCTAACTGGCAGC 60.057 43.478 15.89 0.00 0.00 5.25
4695 5719 3.751621 CAAATCTTTCTAACTGGCAGCG 58.248 45.455 15.89 3.40 0.00 5.18
4781 5825 8.116753 GGTCTTGACTGTATGAATAATTGTTCG 58.883 37.037 9.97 0.00 0.00 3.95
4803 5847 3.643978 GCGCTTGCTGGCCTATCG 61.644 66.667 3.32 0.00 35.07 2.92
4806 5850 0.529773 CGCTTGCTGGCCTATCGTTA 60.530 55.000 3.32 0.00 0.00 3.18
4816 5860 2.031314 GGCCTATCGTTAAGCGTTTTCC 59.969 50.000 0.00 0.00 42.13 3.13
4821 5865 6.376177 CCTATCGTTAAGCGTTTTCCTTTTT 58.624 36.000 0.00 0.00 42.13 1.94
4822 5866 7.520686 CCTATCGTTAAGCGTTTTCCTTTTTA 58.479 34.615 0.00 0.00 42.13 1.52
4823 5867 7.691050 CCTATCGTTAAGCGTTTTCCTTTTTAG 59.309 37.037 0.00 0.00 42.13 1.85
4830 5874 5.032220 AGCGTTTTCCTTTTTAGAAACACG 58.968 37.500 12.35 12.35 38.82 4.49
4831 5875 5.029654 GCGTTTTCCTTTTTAGAAACACGA 58.970 37.500 17.07 0.00 38.50 4.35
4838 5882 9.505995 TTTCCTTTTTAGAAACACGATACAAAC 57.494 29.630 0.00 0.00 0.00 2.93
4839 5883 7.346695 TCCTTTTTAGAAACACGATACAAACG 58.653 34.615 0.00 0.00 0.00 3.60
4844 5888 3.994392 AGAAACACGATACAAACGCAGAT 59.006 39.130 0.00 0.00 0.00 2.90
4862 5906 6.138088 CGCAGATGAATACATACACAAATGG 58.862 40.000 0.00 0.00 36.82 3.16
4863 5907 6.238456 CGCAGATGAATACATACACAAATGGT 60.238 38.462 0.00 0.00 36.82 3.55
4864 5908 6.914215 GCAGATGAATACATACACAAATGGTG 59.086 38.462 0.00 0.00 44.05 4.17
4873 5917 0.240945 CACAAATGGTGTTCGGAGGC 59.759 55.000 0.00 0.00 42.75 4.70
4874 5918 0.179004 ACAAATGGTGTTCGGAGGCA 60.179 50.000 0.00 0.00 37.01 4.75
4875 5919 0.523072 CAAATGGTGTTCGGAGGCAG 59.477 55.000 0.00 0.00 0.00 4.85
4876 5920 1.244019 AAATGGTGTTCGGAGGCAGC 61.244 55.000 6.82 6.82 33.59 5.25
4877 5921 2.410322 AATGGTGTTCGGAGGCAGCA 62.410 55.000 15.23 15.23 42.59 4.41
4878 5922 2.045926 GGTGTTCGGAGGCAGCAT 60.046 61.111 0.00 0.00 33.32 3.79
4879 5923 1.675641 GGTGTTCGGAGGCAGCATT 60.676 57.895 0.00 0.00 33.32 3.56
4880 5924 1.503542 GTGTTCGGAGGCAGCATTG 59.496 57.895 0.00 0.00 0.00 2.82
4892 5936 3.510846 GCATTGCCTGCCTCTGAG 58.489 61.111 0.00 0.00 45.66 3.35
4893 5937 2.119655 GCATTGCCTGCCTCTGAGG 61.120 63.158 19.55 19.55 45.66 3.86
4894 5938 1.302285 CATTGCCTGCCTCTGAGGT 59.698 57.895 23.92 0.08 37.80 3.85
4895 5939 1.030488 CATTGCCTGCCTCTGAGGTG 61.030 60.000 23.92 16.50 37.80 4.00
4896 5940 2.207501 ATTGCCTGCCTCTGAGGTGG 62.208 60.000 23.92 24.02 37.80 4.61
4897 5941 4.106925 GCCTGCCTCTGAGGTGGG 62.107 72.222 27.05 25.26 37.80 4.61
4898 5942 3.406200 CCTGCCTCTGAGGTGGGG 61.406 72.222 23.92 18.24 37.80 4.96
4899 5943 2.608988 CTGCCTCTGAGGTGGGGT 60.609 66.667 23.92 0.00 37.80 4.95
4900 5944 2.607750 TGCCTCTGAGGTGGGGTC 60.608 66.667 23.92 7.60 37.80 4.46
4901 5945 3.403558 GCCTCTGAGGTGGGGTCC 61.404 72.222 23.92 2.66 37.80 4.46
4902 5946 2.122729 CCTCTGAGGTGGGGTCCA 59.877 66.667 15.76 0.00 0.00 4.02
4910 5954 2.577593 GTGGGGTCCACGTAGCTC 59.422 66.667 1.01 0.00 44.95 4.09
4911 5955 2.682494 TGGGGTCCACGTAGCTCC 60.682 66.667 0.00 0.00 0.00 4.70
4912 5956 3.468140 GGGGTCCACGTAGCTCCC 61.468 72.222 0.00 8.24 37.59 4.30
4913 5957 2.363925 GGGTCCACGTAGCTCCCT 60.364 66.667 0.00 0.00 35.63 4.20
4914 5958 2.424733 GGGTCCACGTAGCTCCCTC 61.425 68.421 0.00 0.00 35.63 4.30
4915 5959 2.772691 GGTCCACGTAGCTCCCTCG 61.773 68.421 0.00 0.00 0.00 4.63
4916 5960 1.748122 GTCCACGTAGCTCCCTCGA 60.748 63.158 0.00 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.286946 CGACTTCTGAACGTAAATAGTAGAAAT 57.713 33.333 0.00 0.00 0.00 2.17
10 11 7.752239 CCGACTTCTGAACGTAAATAGTAGAAA 59.248 37.037 0.00 0.00 0.00 2.52
11 12 7.119699 TCCGACTTCTGAACGTAAATAGTAGAA 59.880 37.037 0.00 0.00 0.00 2.10
12 13 6.595326 TCCGACTTCTGAACGTAAATAGTAGA 59.405 38.462 0.00 0.00 0.00 2.59
13 14 6.779117 TCCGACTTCTGAACGTAAATAGTAG 58.221 40.000 0.00 0.00 0.00 2.57
14 15 6.372659 ACTCCGACTTCTGAACGTAAATAGTA 59.627 38.462 0.00 0.00 0.00 1.82
15 16 5.182760 ACTCCGACTTCTGAACGTAAATAGT 59.817 40.000 0.00 0.00 0.00 2.12
16 17 5.638783 ACTCCGACTTCTGAACGTAAATAG 58.361 41.667 0.00 0.00 0.00 1.73
17 18 5.633830 ACTCCGACTTCTGAACGTAAATA 57.366 39.130 0.00 0.00 0.00 1.40
18 19 4.516365 ACTCCGACTTCTGAACGTAAAT 57.484 40.909 0.00 0.00 0.00 1.40
19 20 3.996150 ACTCCGACTTCTGAACGTAAA 57.004 42.857 0.00 0.00 0.00 2.01
20 21 3.996150 AACTCCGACTTCTGAACGTAA 57.004 42.857 0.00 0.00 0.00 3.18
21 22 3.996150 AAACTCCGACTTCTGAACGTA 57.004 42.857 0.00 0.00 0.00 3.57
22 23 2.884894 AAACTCCGACTTCTGAACGT 57.115 45.000 0.00 0.00 0.00 3.99
23 24 4.323868 GTGATAAACTCCGACTTCTGAACG 59.676 45.833 0.00 0.00 0.00 3.95
24 25 4.323868 CGTGATAAACTCCGACTTCTGAAC 59.676 45.833 0.00 0.00 0.00 3.18
25 26 4.482386 CGTGATAAACTCCGACTTCTGAA 58.518 43.478 0.00 0.00 0.00 3.02
26 27 3.672511 GCGTGATAAACTCCGACTTCTGA 60.673 47.826 0.00 0.00 0.00 3.27
27 28 2.599082 GCGTGATAAACTCCGACTTCTG 59.401 50.000 0.00 0.00 0.00 3.02
28 29 2.230508 TGCGTGATAAACTCCGACTTCT 59.769 45.455 0.00 0.00 0.00 2.85
29 30 2.602878 TGCGTGATAAACTCCGACTTC 58.397 47.619 0.00 0.00 0.00 3.01
30 31 2.736144 TGCGTGATAAACTCCGACTT 57.264 45.000 0.00 0.00 0.00 3.01
31 32 2.736144 TTGCGTGATAAACTCCGACT 57.264 45.000 0.00 0.00 0.00 4.18
32 33 3.124636 ACATTTGCGTGATAAACTCCGAC 59.875 43.478 0.00 0.00 0.00 4.79
33 34 3.331150 ACATTTGCGTGATAAACTCCGA 58.669 40.909 0.00 0.00 0.00 4.55
34 35 3.740044 ACATTTGCGTGATAAACTCCG 57.260 42.857 0.00 0.00 0.00 4.63
35 36 5.745653 CAAACATTTGCGTGATAAACTCC 57.254 39.130 0.00 0.00 0.00 3.85
85 86 2.653890 CTGACATTGACAAACTTGGCG 58.346 47.619 0.00 0.00 39.74 5.69
107 108 3.417069 TTCAGATGATTCCCGTTGTGT 57.583 42.857 0.00 0.00 0.00 3.72
108 109 4.024556 GCTATTCAGATGATTCCCGTTGTG 60.025 45.833 0.00 0.00 0.00 3.33
197 203 5.316167 TGAGCAGTTACTCCATCAAACAAT 58.684 37.500 0.00 0.00 35.72 2.71
223 229 5.613358 AAGAAGCTTAAGACGACCAAATG 57.387 39.130 6.67 0.00 0.00 2.32
239 245 1.656652 TATTGCTGAGCCGAAGAAGC 58.343 50.000 0.23 0.00 36.18 3.86
289 295 7.177216 AGGCATGACAAACTGATCTTTTTCATA 59.823 33.333 0.00 0.00 0.00 2.15
479 485 6.982852 TCGGATTTGTACCTTTTTGCATTAA 58.017 32.000 0.00 0.00 0.00 1.40
515 521 6.627087 AGTTCCAGAGAATGACCAAGATAA 57.373 37.500 0.00 0.00 33.67 1.75
523 529 6.867662 TTCTTGAAAGTTCCAGAGAATGAC 57.132 37.500 0.00 0.00 31.60 3.06
545 551 4.222810 AGTTTTTGGGCTCTTGAACTGTTT 59.777 37.500 0.00 0.00 0.00 2.83
548 554 4.580580 AGTAGTTTTTGGGCTCTTGAACTG 59.419 41.667 8.63 0.00 0.00 3.16
549 555 4.793201 AGTAGTTTTTGGGCTCTTGAACT 58.207 39.130 4.82 4.82 0.00 3.01
550 556 6.612306 CATAGTAGTTTTTGGGCTCTTGAAC 58.388 40.000 0.00 0.00 0.00 3.18
551 557 5.183140 GCATAGTAGTTTTTGGGCTCTTGAA 59.817 40.000 0.00 0.00 0.00 2.69
552 558 4.700213 GCATAGTAGTTTTTGGGCTCTTGA 59.300 41.667 0.00 0.00 0.00 3.02
553 559 4.142381 GGCATAGTAGTTTTTGGGCTCTTG 60.142 45.833 0.00 0.00 0.00 3.02
554 560 4.017126 GGCATAGTAGTTTTTGGGCTCTT 58.983 43.478 0.00 0.00 0.00 2.85
555 561 3.267031 AGGCATAGTAGTTTTTGGGCTCT 59.733 43.478 0.00 0.00 0.00 4.09
556 562 3.621558 AGGCATAGTAGTTTTTGGGCTC 58.378 45.455 0.00 0.00 0.00 4.70
557 563 3.267031 AGAGGCATAGTAGTTTTTGGGCT 59.733 43.478 0.00 0.00 0.00 5.19
558 564 3.621558 AGAGGCATAGTAGTTTTTGGGC 58.378 45.455 0.00 0.00 0.00 5.36
559 565 5.990668 AGTAGAGGCATAGTAGTTTTTGGG 58.009 41.667 0.00 0.00 0.00 4.12
560 566 7.210873 CCTAGTAGAGGCATAGTAGTTTTTGG 58.789 42.308 0.00 0.00 38.96 3.28
575 581 5.071788 TCCATAATTTGGTGCCTAGTAGAGG 59.928 44.000 0.00 0.00 46.66 3.69
576 582 5.992217 GTCCATAATTTGGTGCCTAGTAGAG 59.008 44.000 0.00 0.00 46.52 2.43
577 583 5.427157 TGTCCATAATTTGGTGCCTAGTAGA 59.573 40.000 0.00 0.00 46.52 2.59
578 584 5.680619 TGTCCATAATTTGGTGCCTAGTAG 58.319 41.667 6.57 0.00 46.52 2.57
579 585 5.702065 TGTCCATAATTTGGTGCCTAGTA 57.298 39.130 6.57 0.00 46.52 1.82
580 586 4.584638 TGTCCATAATTTGGTGCCTAGT 57.415 40.909 6.57 0.00 46.52 2.57
581 587 5.066505 GTCTTGTCCATAATTTGGTGCCTAG 59.933 44.000 6.57 0.00 46.52 3.02
582 588 4.947388 GTCTTGTCCATAATTTGGTGCCTA 59.053 41.667 6.57 0.00 46.52 3.93
583 589 3.763897 GTCTTGTCCATAATTTGGTGCCT 59.236 43.478 6.57 0.00 46.52 4.75
584 590 3.509575 TGTCTTGTCCATAATTTGGTGCC 59.490 43.478 6.57 0.00 46.52 5.01
585 591 4.782019 TGTCTTGTCCATAATTTGGTGC 57.218 40.909 6.57 0.00 46.52 5.01
586 592 5.104374 GCATGTCTTGTCCATAATTTGGTG 58.896 41.667 0.00 0.00 46.52 4.17
587 593 4.160252 GGCATGTCTTGTCCATAATTTGGT 59.840 41.667 0.00 0.00 46.52 3.67
589 595 4.142403 ACGGCATGTCTTGTCCATAATTTG 60.142 41.667 0.00 0.00 0.00 2.32
590 596 4.016444 ACGGCATGTCTTGTCCATAATTT 58.984 39.130 0.00 0.00 0.00 1.82
591 597 3.378112 CACGGCATGTCTTGTCCATAATT 59.622 43.478 0.00 0.00 0.00 1.40
592 598 2.945008 CACGGCATGTCTTGTCCATAAT 59.055 45.455 0.00 0.00 0.00 1.28
593 599 2.027653 TCACGGCATGTCTTGTCCATAA 60.028 45.455 3.51 0.00 0.00 1.90
594 600 1.552792 TCACGGCATGTCTTGTCCATA 59.447 47.619 3.51 0.00 0.00 2.74
595 601 0.324614 TCACGGCATGTCTTGTCCAT 59.675 50.000 3.51 0.00 0.00 3.41
596 602 0.320683 CTCACGGCATGTCTTGTCCA 60.321 55.000 3.51 0.00 0.00 4.02
597 603 1.639298 GCTCACGGCATGTCTTGTCC 61.639 60.000 3.51 0.00 41.35 4.02
598 604 1.790387 GCTCACGGCATGTCTTGTC 59.210 57.895 3.51 0.00 41.35 3.18
599 605 2.029288 CGCTCACGGCATGTCTTGT 61.029 57.895 3.51 0.00 41.91 3.16
600 606 1.291184 TTCGCTCACGGCATGTCTTG 61.291 55.000 0.00 0.00 41.91 3.02
601 607 1.005037 TTCGCTCACGGCATGTCTT 60.005 52.632 0.00 0.00 41.91 3.01
602 608 1.738099 GTTCGCTCACGGCATGTCT 60.738 57.895 0.00 0.00 41.91 3.41
603 609 1.959899 CTGTTCGCTCACGGCATGTC 61.960 60.000 0.00 0.00 41.91 3.06
604 610 2.029288 CTGTTCGCTCACGGCATGT 61.029 57.895 0.00 0.00 41.91 3.21
605 611 1.737735 TCTGTTCGCTCACGGCATG 60.738 57.895 0.00 0.00 41.91 4.06
606 612 1.738099 GTCTGTTCGCTCACGGCAT 60.738 57.895 0.00 0.00 41.91 4.40
607 613 2.355837 GTCTGTTCGCTCACGGCA 60.356 61.111 0.00 0.00 41.91 5.69
608 614 1.495584 TTTGTCTGTTCGCTCACGGC 61.496 55.000 0.00 0.00 40.63 5.68
609 615 0.232303 GTTTGTCTGTTCGCTCACGG 59.768 55.000 0.00 0.00 40.63 4.94
610 616 0.927537 TGTTTGTCTGTTCGCTCACG 59.072 50.000 0.00 0.00 42.01 4.35
611 617 1.933853 AGTGTTTGTCTGTTCGCTCAC 59.066 47.619 0.00 0.00 0.00 3.51
612 618 2.309528 AGTGTTTGTCTGTTCGCTCA 57.690 45.000 0.00 0.00 0.00 4.26
613 619 3.675467 AAAGTGTTTGTCTGTTCGCTC 57.325 42.857 0.00 0.00 0.00 5.03
614 620 4.434713 AAAAAGTGTTTGTCTGTTCGCT 57.565 36.364 0.00 0.00 0.00 4.93
645 651 8.906867 CCCTCTGCTATTCATTTTCTATTTTGA 58.093 33.333 0.00 0.00 0.00 2.69
646 652 7.650903 GCCCTCTGCTATTCATTTTCTATTTTG 59.349 37.037 0.00 0.00 36.87 2.44
647 653 7.342799 TGCCCTCTGCTATTCATTTTCTATTTT 59.657 33.333 0.00 0.00 42.00 1.82
648 654 6.835488 TGCCCTCTGCTATTCATTTTCTATTT 59.165 34.615 0.00 0.00 42.00 1.40
649 655 6.367983 TGCCCTCTGCTATTCATTTTCTATT 58.632 36.000 0.00 0.00 42.00 1.73
650 656 5.945310 TGCCCTCTGCTATTCATTTTCTAT 58.055 37.500 0.00 0.00 42.00 1.98
651 657 5.372343 TGCCCTCTGCTATTCATTTTCTA 57.628 39.130 0.00 0.00 42.00 2.10
652 658 4.240881 TGCCCTCTGCTATTCATTTTCT 57.759 40.909 0.00 0.00 42.00 2.52
653 659 4.826183 AGATGCCCTCTGCTATTCATTTTC 59.174 41.667 0.00 0.00 42.00 2.29
654 660 4.583489 CAGATGCCCTCTGCTATTCATTTT 59.417 41.667 0.92 0.00 44.73 1.82
655 661 4.142790 CAGATGCCCTCTGCTATTCATTT 58.857 43.478 0.92 0.00 44.73 2.32
656 662 3.752665 CAGATGCCCTCTGCTATTCATT 58.247 45.455 0.92 0.00 44.73 2.57
657 663 3.420300 CAGATGCCCTCTGCTATTCAT 57.580 47.619 0.92 0.00 44.73 2.57
658 664 2.924757 CAGATGCCCTCTGCTATTCA 57.075 50.000 0.92 0.00 44.73 2.57
666 672 0.983378 GGTACCACCAGATGCCCTCT 60.983 60.000 7.15 0.00 38.42 3.69
667 673 0.983378 AGGTACCACCAGATGCCCTC 60.983 60.000 15.94 0.00 41.95 4.30
668 674 0.550147 AAGGTACCACCAGATGCCCT 60.550 55.000 15.94 0.00 41.95 5.19
669 675 0.107165 GAAGGTACCACCAGATGCCC 60.107 60.000 15.94 0.00 41.95 5.36
670 676 0.618458 TGAAGGTACCACCAGATGCC 59.382 55.000 15.94 0.00 41.95 4.40
671 677 1.739067 GTGAAGGTACCACCAGATGC 58.261 55.000 15.94 0.00 41.95 3.91
678 684 1.829849 GGTAGGAGGTGAAGGTACCAC 59.170 57.143 15.94 8.42 43.37 4.16
679 685 1.617804 CGGTAGGAGGTGAAGGTACCA 60.618 57.143 15.94 0.00 43.37 3.25
680 686 1.109609 CGGTAGGAGGTGAAGGTACC 58.890 60.000 2.73 2.73 41.17 3.34
681 687 1.109609 CCGGTAGGAGGTGAAGGTAC 58.890 60.000 0.00 0.00 41.02 3.34
682 688 0.685458 GCCGGTAGGAGGTGAAGGTA 60.685 60.000 1.90 0.00 41.02 3.08
683 689 1.988406 GCCGGTAGGAGGTGAAGGT 60.988 63.158 1.90 0.00 41.02 3.50
684 690 2.901042 GCCGGTAGGAGGTGAAGG 59.099 66.667 1.90 0.00 41.02 3.46
685 691 2.494918 CGCCGGTAGGAGGTGAAG 59.505 66.667 1.90 0.00 41.54 3.02
686 692 3.766691 GCGCCGGTAGGAGGTGAA 61.767 66.667 1.90 0.00 41.54 3.18
687 693 4.753662 AGCGCCGGTAGGAGGTGA 62.754 66.667 2.29 0.00 46.14 4.02
690 696 3.979739 GCTAGCGCCGGTAGGAGG 61.980 72.222 23.09 0.82 41.02 4.30
691 697 2.479412 GATGCTAGCGCCGGTAGGAG 62.479 65.000 23.09 2.79 37.39 3.69
692 698 2.520982 ATGCTAGCGCCGGTAGGA 60.521 61.111 23.09 21.33 41.02 2.94
693 699 2.049063 GATGCTAGCGCCGGTAGG 60.049 66.667 23.09 6.89 41.62 3.18
694 700 2.429236 CGATGCTAGCGCCGGTAG 60.429 66.667 18.39 18.39 36.79 3.18
705 711 0.312416 GATCGTCAGGTAGCGATGCT 59.688 55.000 4.14 0.00 46.16 3.79
779 785 0.107945 GGATTTCAGGAGCTCAGCGT 60.108 55.000 17.19 0.00 0.00 5.07
780 786 0.177604 AGGATTTCAGGAGCTCAGCG 59.822 55.000 17.19 2.80 0.00 5.18
790 797 2.680339 GAGAAAAGCCCGAGGATTTCAG 59.320 50.000 6.63 0.00 40.63 3.02
809 816 2.662006 TGTCTCAGATTTCCGCAGAG 57.338 50.000 0.00 0.00 0.00 3.35
811 818 4.488126 TTTTTGTCTCAGATTTCCGCAG 57.512 40.909 0.00 0.00 0.00 5.18
860 867 2.343758 GCCTCTCGTTCCAGCACA 59.656 61.111 0.00 0.00 0.00 4.57
871 878 1.599576 GTGGACTCTTGGGCCTCTC 59.400 63.158 4.53 0.00 45.52 3.20
897 904 1.006454 GGAGCTATACGGGCCGAAC 60.006 63.158 35.78 16.06 0.00 3.95
942 952 3.267291 TGCCCTTGTATAGCTTTGGGTAA 59.733 43.478 0.00 0.00 37.09 2.85
943 953 2.847449 TGCCCTTGTATAGCTTTGGGTA 59.153 45.455 0.00 0.00 37.09 3.69
944 954 1.638589 TGCCCTTGTATAGCTTTGGGT 59.361 47.619 0.00 0.00 37.09 4.51
945 955 2.435372 TGCCCTTGTATAGCTTTGGG 57.565 50.000 0.00 0.00 37.76 4.12
946 956 3.763897 ACTTTGCCCTTGTATAGCTTTGG 59.236 43.478 0.00 0.00 0.00 3.28
947 957 4.437390 CGACTTTGCCCTTGTATAGCTTTG 60.437 45.833 0.00 0.00 0.00 2.77
948 958 3.689649 CGACTTTGCCCTTGTATAGCTTT 59.310 43.478 0.00 0.00 0.00 3.51
949 959 3.270877 CGACTTTGCCCTTGTATAGCTT 58.729 45.455 0.00 0.00 0.00 3.74
950 960 2.236395 ACGACTTTGCCCTTGTATAGCT 59.764 45.455 0.00 0.00 0.00 3.32
1101 1123 1.230497 GGATGAGGGACGGAGGAGA 59.770 63.158 0.00 0.00 0.00 3.71
1103 1125 1.230497 GAGGATGAGGGACGGAGGA 59.770 63.158 0.00 0.00 0.00 3.71
1170 1195 2.279517 GGCGTACCTGCGGATGAG 60.280 66.667 0.00 0.00 35.06 2.90
1227 1274 4.927782 AAACTGTCAGCGCCGGCA 62.928 61.111 28.98 2.89 43.41 5.69
1228 1275 4.090057 GAAACTGTCAGCGCCGGC 62.090 66.667 19.07 19.07 40.37 6.13
1291 1338 2.754658 TCCTCGAAGGAGTCCGCC 60.755 66.667 2.76 0.00 40.06 6.13
1359 1406 2.813754 TGAAGAATCGGTGGAAAAGCTG 59.186 45.455 0.00 0.00 0.00 4.24
1360 1407 2.814336 GTGAAGAATCGGTGGAAAAGCT 59.186 45.455 0.00 0.00 0.00 3.74
1361 1408 2.552315 TGTGAAGAATCGGTGGAAAAGC 59.448 45.455 0.00 0.00 0.00 3.51
1362 1409 3.815401 AGTGTGAAGAATCGGTGGAAAAG 59.185 43.478 0.00 0.00 0.00 2.27
1363 1410 3.563808 CAGTGTGAAGAATCGGTGGAAAA 59.436 43.478 0.00 0.00 0.00 2.29
1364 1411 3.138304 CAGTGTGAAGAATCGGTGGAAA 58.862 45.455 0.00 0.00 0.00 3.13
1365 1412 2.104111 ACAGTGTGAAGAATCGGTGGAA 59.896 45.455 0.00 0.00 0.00 3.53
1366 1413 1.691976 ACAGTGTGAAGAATCGGTGGA 59.308 47.619 0.00 0.00 0.00 4.02
1367 1414 2.169832 ACAGTGTGAAGAATCGGTGG 57.830 50.000 0.00 0.00 0.00 4.61
1368 1415 2.872245 ACAACAGTGTGAAGAATCGGTG 59.128 45.455 0.00 0.00 36.31 4.94
1369 1416 3.194005 ACAACAGTGTGAAGAATCGGT 57.806 42.857 0.00 0.00 36.31 4.69
1370 1417 3.303990 CCAACAACAGTGTGAAGAATCGG 60.304 47.826 0.00 0.00 38.27 4.18
1371 1418 3.849645 GCCAACAACAGTGTGAAGAATCG 60.850 47.826 0.00 0.00 38.27 3.34
1372 1419 3.066621 TGCCAACAACAGTGTGAAGAATC 59.933 43.478 0.00 0.00 38.27 2.52
1373 1420 3.023119 TGCCAACAACAGTGTGAAGAAT 58.977 40.909 0.00 0.00 38.27 2.40
1374 1421 2.423185 CTGCCAACAACAGTGTGAAGAA 59.577 45.455 0.00 0.00 38.27 2.52
1375 1422 2.016318 CTGCCAACAACAGTGTGAAGA 58.984 47.619 0.00 0.00 38.27 2.87
1376 1423 1.745087 ACTGCCAACAACAGTGTGAAG 59.255 47.619 0.00 0.00 46.38 3.02
1377 1424 1.832883 ACTGCCAACAACAGTGTGAA 58.167 45.000 0.00 0.00 46.38 3.18
1378 1425 3.568000 ACTGCCAACAACAGTGTGA 57.432 47.368 0.00 0.00 46.38 3.58
1383 1430 1.135972 GCATCGTACTGCCAACAACAG 60.136 52.381 0.00 0.00 41.08 3.16
1384 1431 0.871722 GCATCGTACTGCCAACAACA 59.128 50.000 0.00 0.00 36.10 3.33
1385 1432 0.179225 CGCATCGTACTGCCAACAAC 60.179 55.000 1.83 0.00 39.00 3.32
1386 1433 0.601576 ACGCATCGTACTGCCAACAA 60.602 50.000 1.83 0.00 38.73 2.83
1387 1434 1.005512 ACGCATCGTACTGCCAACA 60.006 52.632 1.83 0.00 38.73 3.33
1388 1435 1.419922 CACGCATCGTACTGCCAAC 59.580 57.895 1.83 0.00 38.32 3.77
1389 1436 2.387445 GCACGCATCGTACTGCCAA 61.387 57.895 1.83 0.00 38.32 4.52
1390 1437 2.813474 GCACGCATCGTACTGCCA 60.813 61.111 1.83 0.00 38.32 4.92
1391 1438 3.913573 CGCACGCATCGTACTGCC 61.914 66.667 1.83 0.00 38.32 4.85
1392 1439 4.559386 GCGCACGCATCGTACTGC 62.559 66.667 10.65 0.00 38.32 4.40
1547 1618 0.708209 TGTAGCCCCCTCTAGTCACA 59.292 55.000 0.00 0.00 0.00 3.58
1560 1631 4.202111 ACACCAAACAACAGAATTGTAGCC 60.202 41.667 0.00 0.00 36.23 3.93
1611 1682 0.175302 ACTGCCTGCTCATCTTCTCG 59.825 55.000 0.00 0.00 0.00 4.04
1644 1715 2.708051 TCGATGTCGACCTTGTAGACT 58.292 47.619 14.12 0.00 44.22 3.24
1675 1746 4.825546 ACAGCAAGAGTGAAATCTGTTG 57.174 40.909 0.00 0.00 40.26 3.33
1677 1748 6.000219 ACATTACAGCAAGAGTGAAATCTGT 59.000 36.000 0.00 0.00 38.24 3.41
1679 1750 6.712095 TGAACATTACAGCAAGAGTGAAATCT 59.288 34.615 0.00 0.00 0.00 2.40
1687 1758 4.634883 AGCAGATGAACATTACAGCAAGAG 59.365 41.667 0.00 0.00 0.00 2.85
1714 1785 7.820648 ACAGAGAACACATTAACATGGAATTC 58.179 34.615 0.00 0.00 34.27 2.17
1728 1799 6.375174 CCATTCATATCCAAACAGAGAACACA 59.625 38.462 0.00 0.00 0.00 3.72
1733 1804 9.699410 AATTTACCATTCATATCCAAACAGAGA 57.301 29.630 0.00 0.00 0.00 3.10
1809 1880 4.397103 GGAGTGTGATGCAATGATCTTTGA 59.603 41.667 21.92 9.75 0.00 2.69
1834 1905 2.032030 CACAACTTGACGGATGAACACC 60.032 50.000 0.00 0.00 0.00 4.16
1843 1914 1.842720 TACGTGACACAACTTGACGG 58.157 50.000 6.37 0.00 31.34 4.79
1882 1953 9.093970 TCTATCAACAATTACTTGTCATAACGG 57.906 33.333 0.00 0.00 44.83 4.44
1938 2010 7.640597 TTTAGATCCAACTCTACGAGATCAA 57.359 36.000 0.00 0.00 36.61 2.57
2026 2099 4.104738 TCCCAAGAAGAGAACCAAGTGAAT 59.895 41.667 0.00 0.00 0.00 2.57
2036 2109 5.630415 TTCTCAAACTCCCAAGAAGAGAA 57.370 39.130 0.00 0.00 36.18 2.87
2046 2119 5.003804 TGCTAACTTCATTCTCAAACTCCC 58.996 41.667 0.00 0.00 0.00 4.30
2060 2133 2.475487 GACAAGTGACGGTGCTAACTTC 59.525 50.000 0.00 0.00 30.59 3.01
2117 2190 6.073765 GCATACAGAATATCCAACTAACGGTG 60.074 42.308 0.00 0.00 0.00 4.94
2120 2193 7.438160 TCAAGCATACAGAATATCCAACTAACG 59.562 37.037 0.00 0.00 0.00 3.18
2167 2240 1.523154 TTAGCACCGGCAAAAGCCTG 61.523 55.000 0.00 0.39 44.61 4.85
2204 2277 2.023673 CAGAAAGAACAAGGGCACACA 58.976 47.619 0.00 0.00 0.00 3.72
2277 2350 6.432783 CCCAAGTGACACCACATAGATAAAAA 59.567 38.462 0.84 0.00 45.54 1.94
2278 2351 5.943416 CCCAAGTGACACCACATAGATAAAA 59.057 40.000 0.84 0.00 45.54 1.52
2279 2352 5.496556 CCCAAGTGACACCACATAGATAAA 58.503 41.667 0.84 0.00 45.54 1.40
2280 2353 4.625324 GCCCAAGTGACACCACATAGATAA 60.625 45.833 0.84 0.00 45.54 1.75
2336 2409 3.914771 CATAAATCCTCCCAATGGGTGT 58.085 45.455 19.28 2.30 44.74 4.16
2407 2981 4.103785 AGCATGTATGGTCTAGGAGCAATT 59.896 41.667 3.59 0.00 43.29 2.32
2408 2982 3.649981 AGCATGTATGGTCTAGGAGCAAT 59.350 43.478 3.59 0.00 43.29 3.56
2418 2992 3.565902 GCTTCCCTTTAGCATGTATGGTC 59.434 47.826 0.00 0.00 39.52 4.02
2468 3042 3.268023 AGCTATGCTGAACCAACCTAC 57.732 47.619 0.00 0.00 37.57 3.18
2469 3043 6.935240 ATATAGCTATGCTGAACCAACCTA 57.065 37.500 16.77 0.00 40.10 3.08
2470 3044 5.832539 ATATAGCTATGCTGAACCAACCT 57.167 39.130 16.77 0.00 40.10 3.50
2530 3104 7.044798 AGAAAATACTGTGGCTCTGAGTTATC 58.955 38.462 6.53 0.00 0.00 1.75
2554 3128 5.659440 AAAGAAGGCTAACTGAGAGAGAG 57.341 43.478 0.00 0.00 0.00 3.20
2620 3194 8.684973 GTCTAGACGAATTTGCTTAACTAAGA 57.315 34.615 7.22 0.00 35.33 2.10
2705 3279 1.539065 CCTGGTACCGCATCATCACTC 60.539 57.143 7.57 0.00 0.00 3.51
2772 3346 7.122650 CCATACAAGGAAACCATGAACAGTAAT 59.877 37.037 0.00 0.00 0.00 1.89
2873 3447 9.299963 CAACAAACAGTACTTGATTTTGAATCA 57.700 29.630 17.02 0.00 31.03 2.57
2929 3503 4.694982 ACACGCAATCACAGATTCACAATA 59.305 37.500 0.00 0.00 0.00 1.90
2930 3504 3.503363 ACACGCAATCACAGATTCACAAT 59.497 39.130 0.00 0.00 0.00 2.71
2939 3515 2.811431 TCCCTTTTACACGCAATCACAG 59.189 45.455 0.00 0.00 0.00 3.66
2956 3532 1.331214 CCACTGCAACATTTGTCCCT 58.669 50.000 0.00 0.00 0.00 4.20
2969 3545 4.632538 AACAAACTGAAGTAACCACTGC 57.367 40.909 0.00 0.00 34.36 4.40
3145 3721 8.388103 AGGAAAAGAAATCGTGTATCAATAACG 58.612 33.333 0.00 0.00 38.64 3.18
3226 3802 5.796350 ATTTCAGGTATGCAACTTACGAC 57.204 39.130 0.00 0.00 0.00 4.34
3424 4001 8.980596 AGGATATTTCTATAATCTGGCTCTCAG 58.019 37.037 0.00 0.00 44.68 3.35
3480 4058 4.443034 GCGAGTTAGGATGAAGGTTGGTAT 60.443 45.833 0.00 0.00 0.00 2.73
3503 4081 7.541162 TCAGCAAGAGTCAAATATTTGGATTG 58.459 34.615 24.40 21.59 38.66 2.67
3673 4256 3.001634 CAGCACTGTACTGTTTGTGTGAG 59.998 47.826 2.16 0.00 33.44 3.51
3674 4257 2.935849 CAGCACTGTACTGTTTGTGTGA 59.064 45.455 2.16 0.00 33.44 3.58
3675 4258 2.677836 ACAGCACTGTACTGTTTGTGTG 59.322 45.455 7.85 6.93 46.01 3.82
3719 4302 4.982295 AGGCTTGTTTATTTTCGTTTGCTC 59.018 37.500 0.00 0.00 0.00 4.26
3722 4305 4.084589 GCCAGGCTTGTTTATTTTCGTTTG 60.085 41.667 3.29 0.00 0.00 2.93
3822 4405 3.759086 TCGCAATACAAAGTAAATGGCCA 59.241 39.130 8.56 8.56 0.00 5.36
3823 4406 4.364415 TCGCAATACAAAGTAAATGGCC 57.636 40.909 0.00 0.00 0.00 5.36
3825 4408 5.581605 AGCATCGCAATACAAAGTAAATGG 58.418 37.500 0.00 0.00 0.00 3.16
3826 4409 6.527722 ACAAGCATCGCAATACAAAGTAAATG 59.472 34.615 0.00 0.00 0.00 2.32
3827 4410 6.527722 CACAAGCATCGCAATACAAAGTAAAT 59.472 34.615 0.00 0.00 0.00 1.40
3828 4411 5.855925 CACAAGCATCGCAATACAAAGTAAA 59.144 36.000 0.00 0.00 0.00 2.01
3829 4412 5.180304 TCACAAGCATCGCAATACAAAGTAA 59.820 36.000 0.00 0.00 0.00 2.24
3830 4413 4.693095 TCACAAGCATCGCAATACAAAGTA 59.307 37.500 0.00 0.00 0.00 2.24
3831 4414 3.501828 TCACAAGCATCGCAATACAAAGT 59.498 39.130 0.00 0.00 0.00 2.66
3832 4415 3.848019 GTCACAAGCATCGCAATACAAAG 59.152 43.478 0.00 0.00 0.00 2.77
3833 4416 3.251972 TGTCACAAGCATCGCAATACAAA 59.748 39.130 0.00 0.00 0.00 2.83
3849 4432 9.758651 ACTGCGATATAAAGTATTAATGTCACA 57.241 29.630 0.00 0.00 0.00 3.58
3859 4442 8.414003 TGTCAAGAGAACTGCGATATAAAGTAT 58.586 33.333 0.00 0.00 0.00 2.12
3930 4513 0.260230 TGCAAAAGAACTGTCCCCCA 59.740 50.000 0.00 0.00 0.00 4.96
3960 4543 2.977914 TCACAAGCATTACAGCCTCTC 58.022 47.619 0.00 0.00 34.23 3.20
3964 4547 2.925563 GCAAATCACAAGCATTACAGCC 59.074 45.455 0.00 0.00 34.23 4.85
4040 4626 0.960364 ATCGATGTTTTGCGGCCAGT 60.960 50.000 2.24 0.00 0.00 4.00
4041 4627 1.013596 TATCGATGTTTTGCGGCCAG 58.986 50.000 8.54 0.00 0.00 4.85
4077 4663 3.953201 ACAAAAGCTGTGCTCAAGC 57.047 47.368 0.00 0.00 38.25 4.01
4133 4719 4.692625 GCGCCACAATATAGACAGATTCAT 59.307 41.667 0.00 0.00 0.00 2.57
4165 4751 1.077429 GGCCCCAACCATCAGAGAC 60.077 63.158 0.00 0.00 0.00 3.36
4181 4767 1.210155 GACCACACGCAATTCAGGC 59.790 57.895 0.00 0.00 0.00 4.85
4187 4773 2.742372 GCCGAGACCACACGCAAT 60.742 61.111 0.00 0.00 0.00 3.56
4208 4794 4.393062 AGTTCAAGATCATAGTTTGTGCCG 59.607 41.667 0.00 0.00 0.00 5.69
4251 4837 6.812160 AGCATAAACTACTTGTAAGGAAGACG 59.188 38.462 0.00 0.00 0.00 4.18
4305 4905 7.539436 ACTCATCGTCGCTAATCATGTTATAT 58.461 34.615 0.00 0.00 0.00 0.86
4308 4908 5.183014 ACTCATCGTCGCTAATCATGTTA 57.817 39.130 0.00 0.00 0.00 2.41
4363 4963 4.576053 TGACTTGAATCTTCCACTGTTGTG 59.424 41.667 0.00 0.00 43.45 3.33
4364 4964 4.780815 TGACTTGAATCTTCCACTGTTGT 58.219 39.130 0.00 0.00 0.00 3.32
4395 5011 8.833493 CAATGCAGATTCTGATCACAAGTATTA 58.167 33.333 17.87 0.00 34.60 0.98
4396 5012 7.555195 TCAATGCAGATTCTGATCACAAGTATT 59.445 33.333 17.87 0.00 34.60 1.89
4397 5013 7.012138 GTCAATGCAGATTCTGATCACAAGTAT 59.988 37.037 17.87 0.00 34.60 2.12
4398 5014 6.314648 GTCAATGCAGATTCTGATCACAAGTA 59.685 38.462 17.87 0.00 34.60 2.24
4399 5015 5.123502 GTCAATGCAGATTCTGATCACAAGT 59.876 40.000 17.87 0.00 34.60 3.16
4400 5016 5.570344 GTCAATGCAGATTCTGATCACAAG 58.430 41.667 17.87 3.85 34.60 3.16
4401 5017 4.093850 CGTCAATGCAGATTCTGATCACAA 59.906 41.667 17.87 0.00 34.60 3.33
4402 5018 3.619929 CGTCAATGCAGATTCTGATCACA 59.380 43.478 17.87 6.05 34.60 3.58
4403 5019 3.620374 ACGTCAATGCAGATTCTGATCAC 59.380 43.478 17.87 5.04 34.60 3.06
4404 5020 3.619929 CACGTCAATGCAGATTCTGATCA 59.380 43.478 17.87 7.12 34.60 2.92
4405 5021 3.002042 CCACGTCAATGCAGATTCTGATC 59.998 47.826 17.87 1.23 32.44 2.92
4406 5022 2.941064 CCACGTCAATGCAGATTCTGAT 59.059 45.455 17.87 5.48 32.44 2.90
4407 5023 2.028203 TCCACGTCAATGCAGATTCTGA 60.028 45.455 17.87 3.32 32.44 3.27
4408 5024 2.349590 TCCACGTCAATGCAGATTCTG 58.650 47.619 9.40 9.40 34.12 3.02
4409 5025 2.768253 TCCACGTCAATGCAGATTCT 57.232 45.000 0.00 0.00 0.00 2.40
4410 5026 2.096496 CCTTCCACGTCAATGCAGATTC 59.904 50.000 0.00 0.00 0.00 2.52
4453 5457 8.571336 TCAAATCTTTTGCCTTTGTTTCAAAAA 58.429 25.926 0.00 0.00 38.65 1.94
4454 5458 8.020244 GTCAAATCTTTTGCCTTTGTTTCAAAA 58.980 29.630 0.00 0.00 37.36 2.44
4455 5459 7.390162 AGTCAAATCTTTTGCCTTTGTTTCAAA 59.610 29.630 0.00 0.00 32.89 2.69
4456 5460 6.878389 AGTCAAATCTTTTGCCTTTGTTTCAA 59.122 30.769 0.00 0.00 32.89 2.69
4457 5461 6.405538 AGTCAAATCTTTTGCCTTTGTTTCA 58.594 32.000 0.00 0.00 32.89 2.69
4458 5462 6.291796 CGAGTCAAATCTTTTGCCTTTGTTTC 60.292 38.462 0.00 0.00 32.89 2.78
4459 5463 5.519927 CGAGTCAAATCTTTTGCCTTTGTTT 59.480 36.000 0.00 0.00 32.89 2.83
4460 5464 5.043248 CGAGTCAAATCTTTTGCCTTTGTT 58.957 37.500 0.00 0.00 32.89 2.83
4461 5465 4.097892 ACGAGTCAAATCTTTTGCCTTTGT 59.902 37.500 0.00 0.00 32.89 2.83
4462 5466 4.610945 ACGAGTCAAATCTTTTGCCTTTG 58.389 39.130 0.00 0.00 0.00 2.77
4463 5467 4.554723 CGACGAGTCAAATCTTTTGCCTTT 60.555 41.667 4.02 0.00 0.00 3.11
4464 5468 3.058914 CGACGAGTCAAATCTTTTGCCTT 60.059 43.478 4.02 0.00 0.00 4.35
4465 5469 2.480419 CGACGAGTCAAATCTTTTGCCT 59.520 45.455 4.02 0.00 0.00 4.75
4466 5470 2.478894 TCGACGAGTCAAATCTTTTGCC 59.521 45.455 0.00 0.00 0.00 4.52
4467 5471 3.788434 TCGACGAGTCAAATCTTTTGC 57.212 42.857 0.00 0.00 0.00 3.68
4468 5472 7.510630 ACTTAATCGACGAGTCAAATCTTTTG 58.489 34.615 0.00 0.00 0.00 2.44
4469 5473 7.653767 ACTTAATCGACGAGTCAAATCTTTT 57.346 32.000 0.00 0.00 0.00 2.27
4470 5474 8.752766 TTACTTAATCGACGAGTCAAATCTTT 57.247 30.769 0.00 0.00 0.00 2.52
4471 5475 8.242053 TCTTACTTAATCGACGAGTCAAATCTT 58.758 33.333 0.00 0.00 0.00 2.40
4472 5476 7.759465 TCTTACTTAATCGACGAGTCAAATCT 58.241 34.615 0.00 0.00 0.00 2.40
4473 5477 7.966157 TCTTACTTAATCGACGAGTCAAATC 57.034 36.000 0.00 0.00 0.00 2.17
4474 5478 8.242053 TCTTCTTACTTAATCGACGAGTCAAAT 58.758 33.333 0.00 0.00 0.00 2.32
4475 5479 7.587629 TCTTCTTACTTAATCGACGAGTCAAA 58.412 34.615 0.00 0.00 0.00 2.69
4476 5480 7.137490 TCTTCTTACTTAATCGACGAGTCAA 57.863 36.000 0.00 0.00 0.00 3.18
4477 5481 6.732531 TCTTCTTACTTAATCGACGAGTCA 57.267 37.500 0.00 0.00 0.00 3.41
4478 5482 7.462731 TCTTCTTCTTACTTAATCGACGAGTC 58.537 38.462 0.00 0.00 0.00 3.36
4479 5483 7.333921 TCTCTTCTTCTTACTTAATCGACGAGT 59.666 37.037 3.01 2.70 0.00 4.18
4480 5484 7.686519 TCTCTTCTTCTTACTTAATCGACGAG 58.313 38.462 3.01 0.00 0.00 4.18
4481 5485 7.606858 TCTCTTCTTCTTACTTAATCGACGA 57.393 36.000 0.00 0.00 0.00 4.20
4482 5486 8.844441 ATTCTCTTCTTCTTACTTAATCGACG 57.156 34.615 0.00 0.00 0.00 5.12
4484 5488 9.088512 GCAATTCTCTTCTTCTTACTTAATCGA 57.911 33.333 0.00 0.00 0.00 3.59
4485 5489 8.331742 GGCAATTCTCTTCTTCTTACTTAATCG 58.668 37.037 0.00 0.00 0.00 3.34
4486 5490 8.616942 GGGCAATTCTCTTCTTCTTACTTAATC 58.383 37.037 0.00 0.00 0.00 1.75
4487 5491 8.109634 TGGGCAATTCTCTTCTTCTTACTTAAT 58.890 33.333 0.00 0.00 0.00 1.40
4488 5492 7.458397 TGGGCAATTCTCTTCTTCTTACTTAA 58.542 34.615 0.00 0.00 0.00 1.85
4489 5493 7.016153 TGGGCAATTCTCTTCTTCTTACTTA 57.984 36.000 0.00 0.00 0.00 2.24
4490 5494 5.880901 TGGGCAATTCTCTTCTTCTTACTT 58.119 37.500 0.00 0.00 0.00 2.24
4491 5495 5.013599 ACTGGGCAATTCTCTTCTTCTTACT 59.986 40.000 0.00 0.00 0.00 2.24
4492 5496 5.249420 ACTGGGCAATTCTCTTCTTCTTAC 58.751 41.667 0.00 0.00 0.00 2.34
4493 5497 5.505181 ACTGGGCAATTCTCTTCTTCTTA 57.495 39.130 0.00 0.00 0.00 2.10
4494 5498 4.379302 ACTGGGCAATTCTCTTCTTCTT 57.621 40.909 0.00 0.00 0.00 2.52
4495 5499 4.379302 AACTGGGCAATTCTCTTCTTCT 57.621 40.909 0.00 0.00 0.00 2.85
4496 5500 5.707764 AGTTAACTGGGCAATTCTCTTCTTC 59.292 40.000 7.48 0.00 0.00 2.87
4497 5501 5.635120 AGTTAACTGGGCAATTCTCTTCTT 58.365 37.500 7.48 0.00 0.00 2.52
4498 5502 5.248380 AGTTAACTGGGCAATTCTCTTCT 57.752 39.130 7.48 0.00 0.00 2.85
4499 5503 6.402226 CGTTAGTTAACTGGGCAATTCTCTTC 60.402 42.308 18.56 0.00 34.12 2.87
4500 5504 5.411669 CGTTAGTTAACTGGGCAATTCTCTT 59.588 40.000 18.56 0.00 34.12 2.85
4501 5505 4.935808 CGTTAGTTAACTGGGCAATTCTCT 59.064 41.667 18.56 0.00 34.12 3.10
4502 5506 4.933400 TCGTTAGTTAACTGGGCAATTCTC 59.067 41.667 18.56 0.00 34.12 2.87
4503 5507 4.901868 TCGTTAGTTAACTGGGCAATTCT 58.098 39.130 18.56 0.00 34.12 2.40
4504 5508 5.616488 TTCGTTAGTTAACTGGGCAATTC 57.384 39.130 18.56 0.00 34.12 2.17
4505 5509 6.394025 TTTTCGTTAGTTAACTGGGCAATT 57.606 33.333 18.56 0.00 34.12 2.32
4506 5510 6.210796 GTTTTTCGTTAGTTAACTGGGCAAT 58.789 36.000 18.56 0.00 34.12 3.56
4507 5511 5.450274 GGTTTTTCGTTAGTTAACTGGGCAA 60.450 40.000 18.56 1.25 34.12 4.52
4508 5512 4.036616 GGTTTTTCGTTAGTTAACTGGGCA 59.963 41.667 18.56 0.00 34.12 5.36
4509 5513 4.036616 TGGTTTTTCGTTAGTTAACTGGGC 59.963 41.667 18.56 7.04 34.12 5.36
4510 5514 5.528320 TCTGGTTTTTCGTTAGTTAACTGGG 59.472 40.000 18.56 7.15 34.12 4.45
4511 5515 6.607735 TCTGGTTTTTCGTTAGTTAACTGG 57.392 37.500 18.56 7.50 34.12 4.00
4517 5521 9.511144 CAGTTTTTATCTGGTTTTTCGTTAGTT 57.489 29.630 0.00 0.00 0.00 2.24
4518 5522 8.895737 TCAGTTTTTATCTGGTTTTTCGTTAGT 58.104 29.630 0.00 0.00 34.15 2.24
4519 5523 9.893305 ATCAGTTTTTATCTGGTTTTTCGTTAG 57.107 29.630 0.00 0.00 34.15 2.34
4521 5525 9.673454 GTATCAGTTTTTATCTGGTTTTTCGTT 57.327 29.630 0.00 0.00 34.15 3.85
4522 5526 8.842280 TGTATCAGTTTTTATCTGGTTTTTCGT 58.158 29.630 0.00 0.00 34.15 3.85
4523 5527 9.672086 TTGTATCAGTTTTTATCTGGTTTTTCG 57.328 29.630 0.00 0.00 34.15 3.46
4529 5533 9.614792 GGTCTATTGTATCAGTTTTTATCTGGT 57.385 33.333 0.00 0.00 34.15 4.00
4530 5534 9.613428 TGGTCTATTGTATCAGTTTTTATCTGG 57.387 33.333 0.00 0.00 34.15 3.86
4536 5540 8.559536 CGCATATGGTCTATTGTATCAGTTTTT 58.440 33.333 4.56 0.00 0.00 1.94
4537 5541 7.173218 CCGCATATGGTCTATTGTATCAGTTTT 59.827 37.037 4.56 0.00 0.00 2.43
4538 5542 6.650807 CCGCATATGGTCTATTGTATCAGTTT 59.349 38.462 4.56 0.00 0.00 2.66
4539 5543 6.014584 TCCGCATATGGTCTATTGTATCAGTT 60.015 38.462 4.56 0.00 0.00 3.16
4540 5544 5.480422 TCCGCATATGGTCTATTGTATCAGT 59.520 40.000 4.56 0.00 0.00 3.41
4541 5545 5.807520 GTCCGCATATGGTCTATTGTATCAG 59.192 44.000 4.56 0.00 0.00 2.90
4542 5546 5.480422 AGTCCGCATATGGTCTATTGTATCA 59.520 40.000 4.56 0.00 0.00 2.15
4543 5547 5.967088 AGTCCGCATATGGTCTATTGTATC 58.033 41.667 4.56 0.00 0.00 2.24
4544 5548 6.663953 AGTAGTCCGCATATGGTCTATTGTAT 59.336 38.462 4.56 0.00 33.30 2.29
4545 5549 6.008331 AGTAGTCCGCATATGGTCTATTGTA 58.992 40.000 4.56 0.00 33.30 2.41
4546 5550 4.833380 AGTAGTCCGCATATGGTCTATTGT 59.167 41.667 4.56 0.00 33.30 2.71
4547 5551 5.392767 AGTAGTCCGCATATGGTCTATTG 57.607 43.478 4.56 0.00 33.30 1.90
4548 5552 4.156190 CGAGTAGTCCGCATATGGTCTATT 59.844 45.833 4.56 0.00 33.30 1.73
4549 5553 3.690139 CGAGTAGTCCGCATATGGTCTAT 59.310 47.826 4.56 0.00 33.30 1.98
4550 5554 3.072211 CGAGTAGTCCGCATATGGTCTA 58.928 50.000 4.56 0.00 0.00 2.59
4551 5555 1.880675 CGAGTAGTCCGCATATGGTCT 59.119 52.381 4.56 0.00 0.00 3.85
4552 5556 2.333389 CGAGTAGTCCGCATATGGTC 57.667 55.000 4.56 0.00 0.00 4.02
4561 5565 4.352600 TTCTTTCTTAGCGAGTAGTCCG 57.647 45.455 0.00 0.00 0.00 4.79
4562 5566 5.712004 AGTTTCTTTCTTAGCGAGTAGTCC 58.288 41.667 0.00 0.00 0.00 3.85
4563 5567 6.862090 TGAAGTTTCTTTCTTAGCGAGTAGTC 59.138 38.462 0.00 0.00 0.00 2.59
4564 5568 6.746120 TGAAGTTTCTTTCTTAGCGAGTAGT 58.254 36.000 0.00 0.00 0.00 2.73
4565 5569 7.542477 TCATGAAGTTTCTTTCTTAGCGAGTAG 59.458 37.037 0.00 0.00 0.00 2.57
4566 5570 7.328737 GTCATGAAGTTTCTTTCTTAGCGAGTA 59.671 37.037 0.00 0.00 0.00 2.59
4567 5571 6.146347 GTCATGAAGTTTCTTTCTTAGCGAGT 59.854 38.462 0.00 0.00 0.00 4.18
4568 5572 6.401581 GGTCATGAAGTTTCTTTCTTAGCGAG 60.402 42.308 0.00 0.00 0.00 5.03
4569 5573 5.408604 GGTCATGAAGTTTCTTTCTTAGCGA 59.591 40.000 0.00 0.00 0.00 4.93
4570 5574 5.179368 TGGTCATGAAGTTTCTTTCTTAGCG 59.821 40.000 0.00 0.00 0.00 4.26
4571 5575 6.017109 TGTGGTCATGAAGTTTCTTTCTTAGC 60.017 38.462 0.00 0.00 0.00 3.09
4572 5576 7.227512 AGTGTGGTCATGAAGTTTCTTTCTTAG 59.772 37.037 0.00 0.00 0.00 2.18
4573 5577 7.012327 CAGTGTGGTCATGAAGTTTCTTTCTTA 59.988 37.037 0.00 0.00 0.00 2.10
4574 5578 5.888161 AGTGTGGTCATGAAGTTTCTTTCTT 59.112 36.000 0.00 0.00 0.00 2.52
4575 5579 5.297776 CAGTGTGGTCATGAAGTTTCTTTCT 59.702 40.000 0.00 0.00 0.00 2.52
4576 5580 5.066505 ACAGTGTGGTCATGAAGTTTCTTTC 59.933 40.000 0.00 0.00 0.00 2.62
4577 5581 4.949856 ACAGTGTGGTCATGAAGTTTCTTT 59.050 37.500 0.00 0.00 0.00 2.52
4578 5582 4.526970 ACAGTGTGGTCATGAAGTTTCTT 58.473 39.130 0.00 0.00 0.00 2.52
4579 5583 4.130118 GACAGTGTGGTCATGAAGTTTCT 58.870 43.478 0.00 0.00 37.73 2.52
4580 5584 3.876914 TGACAGTGTGGTCATGAAGTTTC 59.123 43.478 0.00 0.00 42.56 2.78
4581 5585 3.884895 TGACAGTGTGGTCATGAAGTTT 58.115 40.909 0.00 0.00 42.56 2.66
4582 5586 3.558931 TGACAGTGTGGTCATGAAGTT 57.441 42.857 0.00 0.00 42.56 2.66
4583 5587 3.118261 AGTTGACAGTGTGGTCATGAAGT 60.118 43.478 0.00 0.00 46.37 3.01
4584 5588 3.470709 AGTTGACAGTGTGGTCATGAAG 58.529 45.455 0.00 0.00 46.37 3.02
4585 5589 3.466836 GAGTTGACAGTGTGGTCATGAA 58.533 45.455 0.00 0.00 46.37 2.57
4586 5590 2.545742 CGAGTTGACAGTGTGGTCATGA 60.546 50.000 0.00 0.00 46.37 3.07
4587 5591 1.794701 CGAGTTGACAGTGTGGTCATG 59.205 52.381 0.00 0.00 46.37 3.07
4588 5592 1.686587 TCGAGTTGACAGTGTGGTCAT 59.313 47.619 0.00 0.00 46.37 3.06
4589 5593 1.107945 TCGAGTTGACAGTGTGGTCA 58.892 50.000 0.00 0.00 45.54 4.02
4590 5594 3.959478 TCGAGTTGACAGTGTGGTC 57.041 52.632 0.00 0.00 38.29 4.02
4600 5604 6.307077 CGTCTTATGTATGTTTGTCGAGTTGA 59.693 38.462 0.00 0.00 0.00 3.18
4601 5605 6.307077 TCGTCTTATGTATGTTTGTCGAGTTG 59.693 38.462 0.00 0.00 0.00 3.16
4602 5606 6.384224 TCGTCTTATGTATGTTTGTCGAGTT 58.616 36.000 0.00 0.00 0.00 3.01
4603 5607 5.946298 TCGTCTTATGTATGTTTGTCGAGT 58.054 37.500 0.00 0.00 0.00 4.18
4604 5608 6.864560 TTCGTCTTATGTATGTTTGTCGAG 57.135 37.500 0.00 0.00 0.00 4.04
4605 5609 6.641723 TGTTTCGTCTTATGTATGTTTGTCGA 59.358 34.615 0.00 0.00 0.00 4.20
4606 5610 6.813327 TGTTTCGTCTTATGTATGTTTGTCG 58.187 36.000 0.00 0.00 0.00 4.35
4607 5611 7.532884 GGTTGTTTCGTCTTATGTATGTTTGTC 59.467 37.037 0.00 0.00 0.00 3.18
4608 5612 7.012515 TGGTTGTTTCGTCTTATGTATGTTTGT 59.987 33.333 0.00 0.00 0.00 2.83
4609 5613 7.356540 TGGTTGTTTCGTCTTATGTATGTTTG 58.643 34.615 0.00 0.00 0.00 2.93
4610 5614 7.499321 TGGTTGTTTCGTCTTATGTATGTTT 57.501 32.000 0.00 0.00 0.00 2.83
4611 5615 7.389330 TCATGGTTGTTTCGTCTTATGTATGTT 59.611 33.333 0.00 0.00 0.00 2.71
4612 5616 6.876789 TCATGGTTGTTTCGTCTTATGTATGT 59.123 34.615 0.00 0.00 0.00 2.29
4613 5617 7.302350 TCATGGTTGTTTCGTCTTATGTATG 57.698 36.000 0.00 0.00 0.00 2.39
4614 5618 8.397906 CAATCATGGTTGTTTCGTCTTATGTAT 58.602 33.333 10.72 0.00 0.00 2.29
4615 5619 7.148323 CCAATCATGGTTGTTTCGTCTTATGTA 60.148 37.037 17.29 0.00 42.18 2.29
4616 5620 6.349280 CCAATCATGGTTGTTTCGTCTTATGT 60.349 38.462 17.29 0.00 42.18 2.29
4617 5621 6.029607 CCAATCATGGTTGTTTCGTCTTATG 58.970 40.000 17.29 0.00 42.18 1.90
4618 5622 6.194796 CCAATCATGGTTGTTTCGTCTTAT 57.805 37.500 17.29 0.00 42.18 1.73
4619 5623 5.621197 CCAATCATGGTTGTTTCGTCTTA 57.379 39.130 17.29 0.00 42.18 2.10
4620 5624 4.503741 CCAATCATGGTTGTTTCGTCTT 57.496 40.909 17.29 0.00 42.18 3.01
4633 5637 3.270027 TCTTTCGTAGCCACCAATCATG 58.730 45.455 0.00 0.00 0.00 3.07
4648 5652 2.535984 AGCTGCGTCGATATTTCTTTCG 59.464 45.455 0.00 0.00 36.72 3.46
4703 5727 1.812922 CATCGGACAGAGGCAGTGC 60.813 63.158 6.55 6.55 0.00 4.40
4803 5847 8.316046 GTGTTTCTAAAAAGGAAAACGCTTAAC 58.684 33.333 0.00 0.00 34.97 2.01
4806 5850 5.513849 CGTGTTTCTAAAAAGGAAAACGCTT 59.486 36.000 0.00 0.00 34.97 4.68
4816 5860 6.629649 TGCGTTTGTATCGTGTTTCTAAAAAG 59.370 34.615 0.00 0.00 0.00 2.27
4821 5865 4.548494 TCTGCGTTTGTATCGTGTTTCTA 58.452 39.130 0.00 0.00 0.00 2.10
4822 5866 3.386486 TCTGCGTTTGTATCGTGTTTCT 58.614 40.909 0.00 0.00 0.00 2.52
4823 5867 3.781341 TCTGCGTTTGTATCGTGTTTC 57.219 42.857 0.00 0.00 0.00 2.78
4830 5874 8.004344 GTGTATGTATTCATCTGCGTTTGTATC 58.996 37.037 0.00 0.00 35.70 2.24
4831 5875 7.494298 TGTGTATGTATTCATCTGCGTTTGTAT 59.506 33.333 0.00 0.00 35.70 2.29
4838 5882 6.138088 CCATTTGTGTATGTATTCATCTGCG 58.862 40.000 0.00 0.00 35.70 5.18
4839 5883 6.914215 CACCATTTGTGTATGTATTCATCTGC 59.086 38.462 0.00 0.00 40.26 4.26
4862 5906 1.503542 CAATGCTGCCTCCGAACAC 59.496 57.895 0.00 0.00 0.00 3.32
4863 5907 2.334946 GCAATGCTGCCTCCGAACA 61.335 57.895 0.00 0.00 43.26 3.18
4864 5908 2.486966 GCAATGCTGCCTCCGAAC 59.513 61.111 0.00 0.00 43.26 3.95
4876 5920 1.030488 CACCTCAGAGGCAGGCAATG 61.030 60.000 17.31 1.29 39.63 2.82
4877 5921 1.302285 CACCTCAGAGGCAGGCAAT 59.698 57.895 17.31 0.00 39.63 3.56
4878 5922 2.752358 CACCTCAGAGGCAGGCAA 59.248 61.111 17.31 0.00 39.63 4.52
4879 5923 3.324930 CCACCTCAGAGGCAGGCA 61.325 66.667 17.31 0.00 39.63 4.75
4880 5924 4.106925 CCCACCTCAGAGGCAGGC 62.107 72.222 17.31 0.00 39.63 4.85
4881 5925 3.406200 CCCCACCTCAGAGGCAGG 61.406 72.222 17.31 17.78 39.63 4.85
4882 5926 2.608988 ACCCCACCTCAGAGGCAG 60.609 66.667 17.31 9.40 39.63 4.85
4883 5927 2.607750 GACCCCACCTCAGAGGCA 60.608 66.667 17.31 0.00 39.63 4.75
4884 5928 3.403558 GGACCCCACCTCAGAGGC 61.404 72.222 17.31 0.00 39.63 4.70
4885 5929 2.122729 TGGACCCCACCTCAGAGG 59.877 66.667 15.72 15.72 42.49 3.69
4894 5938 2.682494 GGAGCTACGTGGACCCCA 60.682 66.667 1.81 0.00 0.00 4.96
4895 5939 3.468140 GGGAGCTACGTGGACCCC 61.468 72.222 18.78 15.56 35.00 4.95
4896 5940 2.363925 AGGGAGCTACGTGGACCC 60.364 66.667 20.84 20.84 40.71 4.46
4897 5941 2.772691 CGAGGGAGCTACGTGGACC 61.773 68.421 1.81 5.04 0.00 4.46
4898 5942 1.748122 TCGAGGGAGCTACGTGGAC 60.748 63.158 1.81 0.00 0.00 4.02
4899 5943 2.672908 TCGAGGGAGCTACGTGGA 59.327 61.111 1.81 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.