Multiple sequence alignment - TraesCS7A01G478900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G478900 chr7A 100.000 4450 0 0 1 4450 671524243 671519794 0.000000e+00 8218.0
1 TraesCS7A01G478900 chr7A 100.000 145 0 0 1294 1438 671522839 671522695 7.340000e-68 268.0
2 TraesCS7A01G478900 chr7A 100.000 145 0 0 1405 1549 671522950 671522806 7.340000e-68 268.0
3 TraesCS7A01G478900 chr7A 97.619 42 1 0 1699 1740 56984101 56984142 6.170000e-09 73.1
4 TraesCS7A01G478900 chr2A 98.846 2426 21 6 2027 4450 650614277 650616697 0.000000e+00 4318.0
5 TraesCS7A01G478900 chr2A 97.658 2434 23 3 2027 4450 575679116 575676707 0.000000e+00 4148.0
6 TraesCS7A01G478900 chr2A 96.720 1006 12 1 454 1438 650611505 650612510 0.000000e+00 1655.0
7 TraesCS7A01G478900 chr2A 96.468 991 11 2 469 1438 575684357 575683370 0.000000e+00 1615.0
8 TraesCS7A01G478900 chr2A 98.328 299 5 0 1405 1703 650612366 650612664 3.940000e-145 525.0
9 TraesCS7A01G478900 chr2A 98.973 292 3 0 1740 2031 575680343 575680052 1.420000e-144 523.0
10 TraesCS7A01G478900 chr2A 97.260 292 4 2 1740 2031 650612662 650612949 4.000000e-135 492.0
11 TraesCS7A01G478900 chr2A 99.231 260 2 0 1405 1664 575683514 575683255 1.870000e-128 470.0
12 TraesCS7A01G478900 chr2A 94.355 248 12 2 4205 4450 34664143 34663896 3.250000e-101 379.0
13 TraesCS7A01G478900 chr2A 82.301 226 16 13 310 513 650611396 650611619 1.650000e-39 174.0
14 TraesCS7A01G478900 chr2A 100.000 54 0 0 1650 1703 575680394 575680341 2.830000e-17 100.0
15 TraesCS7A01G478900 chr2A 96.667 60 2 0 415 474 575684357 575684298 2.830000e-17 100.0
16 TraesCS7A01G478900 chr7D 97.879 1320 22 3 2742 4061 511628592 511627279 0.000000e+00 2278.0
17 TraesCS7A01G478900 chr7D 94.188 671 21 4 2028 2698 202030164 202030816 0.000000e+00 1007.0
18 TraesCS7A01G478900 chr7D 98.409 440 7 0 999 1438 202028372 202028811 0.000000e+00 774.0
19 TraesCS7A01G478900 chr7D 88.829 555 37 15 316 867 202027836 202028368 0.000000e+00 658.0
20 TraesCS7A01G478900 chr7D 98.662 299 4 0 1405 1703 202028667 202028965 8.480000e-147 531.0
21 TraesCS7A01G478900 chr7D 97.945 292 6 0 1740 2031 202028963 202029254 1.430000e-139 507.0
22 TraesCS7A01G478900 chr7D 100.000 34 0 0 1516 1549 202028667 202028700 3.720000e-06 63.9
23 TraesCS7A01G478900 chr7D 100.000 34 0 0 1294 1327 202028778 202028811 3.720000e-06 63.9
24 TraesCS7A01G478900 chr5D 97.727 1320 24 3 2742 4061 2607511 2606198 0.000000e+00 2266.0
25 TraesCS7A01G478900 chr5D 96.680 512 16 1 2028 2539 445093603 445093093 0.000000e+00 850.0
26 TraesCS7A01G478900 chr5D 98.169 437 8 0 1002 1438 445095393 445094957 0.000000e+00 763.0
27 TraesCS7A01G478900 chr5D 88.770 561 38 15 316 873 445095932 445095394 0.000000e+00 664.0
28 TraesCS7A01G478900 chr5D 97.659 299 7 0 1405 1703 445095101 445094803 8.540000e-142 514.0
29 TraesCS7A01G478900 chr5D 97.945 292 6 0 1740 2031 445094805 445094514 1.430000e-139 507.0
30 TraesCS7A01G478900 chr5D 93.145 248 15 2 4205 4450 409298634 409298387 3.270000e-96 363.0
31 TraesCS7A01G478900 chr5D 97.351 151 3 1 2549 2698 445093108 445092958 5.710000e-64 255.0
32 TraesCS7A01G478900 chr5D 83.036 224 31 6 2080 2301 44502734 44502952 3.510000e-46 196.0
33 TraesCS7A01G478900 chr1D 96.767 866 19 6 3197 4061 375790678 375791535 0.000000e+00 1435.0
34 TraesCS7A01G478900 chr1D 93.223 782 27 9 3108 3882 416236955 416236193 0.000000e+00 1127.0
35 TraesCS7A01G478900 chr1D 97.917 480 7 3 2720 3199 375782424 375782900 0.000000e+00 828.0
36 TraesCS7A01G478900 chr1D 95.735 211 9 0 2778 2988 416237162 416236952 1.530000e-89 340.0
37 TraesCS7A01G478900 chr3B 92.128 686 33 3 2027 2698 61991014 61990336 0.000000e+00 948.0
38 TraesCS7A01G478900 chr3B 93.810 420 25 1 454 873 793281385 793280967 8.120000e-177 630.0
39 TraesCS7A01G478900 chr3B 93.510 416 25 2 452 867 402456940 402457353 6.320000e-173 617.0
40 TraesCS7A01G478900 chr3B 98.662 299 4 0 1405 1703 61992530 61992232 8.480000e-147 531.0
41 TraesCS7A01G478900 chr3B 97.049 305 4 1 1139 1438 61992690 61992386 3.970000e-140 508.0
42 TraesCS7A01G478900 chr3B 97.945 292 6 0 1740 2031 61992234 61991943 1.430000e-139 507.0
43 TraesCS7A01G478900 chr3B 97.753 178 3 1 3632 3808 51868243 51868420 5.590000e-79 305.0
44 TraesCS7A01G478900 chr3B 97.500 40 1 0 1701 1740 10211091 10211052 7.990000e-08 69.4
45 TraesCS7A01G478900 chr6B 97.905 525 10 1 2720 3243 225650066 225650590 0.000000e+00 907.0
46 TraesCS7A01G478900 chr6B 91.369 336 20 3 886 1212 658609371 658609036 6.790000e-123 451.0
47 TraesCS7A01G478900 chr6B 82.589 224 32 5 2080 2301 62247993 62248211 1.630000e-44 191.0
48 TraesCS7A01G478900 chr6D 96.505 515 17 1 2025 2539 104065861 104066374 0.000000e+00 850.0
49 TraesCS7A01G478900 chr6D 98.864 440 5 0 999 1438 104064081 104064520 0.000000e+00 785.0
50 TraesCS7A01G478900 chr6D 89.150 553 38 12 316 867 104063546 104064077 0.000000e+00 669.0
51 TraesCS7A01G478900 chr6D 98.662 299 4 0 1405 1703 104064376 104064674 8.480000e-147 531.0
52 TraesCS7A01G478900 chr6D 97.260 292 7 1 1740 2031 104064672 104064962 1.110000e-135 494.0
53 TraesCS7A01G478900 chr6D 97.351 151 3 1 2549 2698 104066359 104066509 5.710000e-64 255.0
54 TraesCS7A01G478900 chr6D 100.000 34 0 0 1516 1549 104064376 104064409 3.720000e-06 63.9
55 TraesCS7A01G478900 chr6D 100.000 34 0 0 1294 1327 104064487 104064520 3.720000e-06 63.9
56 TraesCS7A01G478900 chr6A 95.349 430 12 3 3632 4061 585067361 585067782 0.000000e+00 676.0
57 TraesCS7A01G478900 chr6A 84.167 120 12 5 2248 2365 521751645 521751531 4.710000e-20 110.0
58 TraesCS7A01G478900 chr4A 93.111 450 28 3 419 867 615512312 615512759 0.000000e+00 656.0
59 TraesCS7A01G478900 chr4A 89.796 147 10 3 2391 2536 359180318 359180460 2.730000e-42 183.0
60 TraesCS7A01G478900 chr4A 87.919 149 17 1 2551 2698 111288086 111287938 1.650000e-39 174.0
61 TraesCS7A01G478900 chr2B 91.935 434 35 0 458 891 528466085 528466518 3.810000e-170 608.0
62 TraesCS7A01G478900 chr2B 94.422 251 11 3 4203 4450 790372019 790371769 2.510000e-102 383.0
63 TraesCS7A01G478900 chr2B 91.235 251 19 3 4203 4450 741874226 741873976 5.510000e-89 339.0
64 TraesCS7A01G478900 chr2B 90.837 251 20 3 4203 4450 741870747 741870497 2.570000e-87 333.0
65 TraesCS7A01G478900 chr2B 90.438 251 21 3 4203 4450 741867287 741867037 1.190000e-85 327.0
66 TraesCS7A01G478900 chr2B 89.868 227 19 3 2061 2284 110583207 110583432 5.630000e-74 289.0
67 TraesCS7A01G478900 chr2B 87.919 149 17 1 2551 2698 76051554 76051406 1.650000e-39 174.0
68 TraesCS7A01G478900 chr5A 91.617 334 22 2 885 1212 548387162 548387495 1.460000e-124 457.0
69 TraesCS7A01G478900 chr5A 89.286 336 27 6 886 1212 365705022 365704687 3.200000e-111 412.0
70 TraesCS7A01G478900 chr5A 91.837 49 3 1 1693 1740 547796317 547796365 2.870000e-07 67.6
71 TraesCS7A01G478900 chr1B 90.712 323 21 2 899 1212 540843750 540844072 5.320000e-114 422.0
72 TraesCS7A01G478900 chr1B 87.446 231 26 2 2685 2912 631135476 631135706 3.410000e-66 263.0
73 TraesCS7A01G478900 chr1B 88.073 218 18 2 2976 3189 631136274 631136487 7.390000e-63 252.0
74 TraesCS7A01G478900 chr1B 86.458 192 21 2 2976 3167 206622367 206622553 5.830000e-49 206.0
75 TraesCS7A01G478900 chr1B 85.430 151 15 5 2494 2643 24698529 24698385 2.770000e-32 150.0
76 TraesCS7A01G478900 chr1B 95.745 47 2 0 1694 1740 17353548 17353502 4.770000e-10 76.8
77 TraesCS7A01G478900 chr1B 91.837 49 4 0 1692 1740 250420512 250420464 7.990000e-08 69.4
78 TraesCS7A01G478900 chr1B 93.333 45 2 1 1694 1738 456155199 456155242 1.030000e-06 65.8
79 TraesCS7A01G478900 chr4B 94.422 251 11 3 4203 4450 651792482 651792232 2.510000e-102 383.0
80 TraesCS7A01G478900 chrUn 97.191 178 4 1 3632 3808 117286059 117286236 2.600000e-77 300.0
81 TraesCS7A01G478900 chr5B 86.047 172 23 1 2527 2698 525272062 525271892 2.730000e-42 183.0
82 TraesCS7A01G478900 chr5B 84.768 151 16 5 2494 2643 641173686 641173830 1.290000e-30 145.0
83 TraesCS7A01G478900 chr5B 95.455 44 2 0 1697 1740 428847344 428847301 2.220000e-08 71.3
84 TraesCS7A01G478900 chr5B 97.561 41 0 1 1700 1740 337054887 337054848 7.990000e-08 69.4
85 TraesCS7A01G478900 chr1A 91.837 49 4 0 1692 1740 171459652 171459700 7.990000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G478900 chr7A 671519794 671524243 4449 True 2918.000000 8218 100.000000 1 4450 3 chr7A.!!$R1 4449
1 TraesCS7A01G478900 chr2A 650611396 650616697 5301 False 1432.800000 4318 94.691000 310 4450 5 chr2A.!!$F1 4140
2 TraesCS7A01G478900 chr2A 575676707 575684357 7650 True 1159.333333 4148 98.166167 415 4450 6 chr2A.!!$R2 4035
3 TraesCS7A01G478900 chr7D 511627279 511628592 1313 True 2278.000000 2278 97.879000 2742 4061 1 chr7D.!!$R1 1319
4 TraesCS7A01G478900 chr7D 202027836 202030816 2980 False 514.971429 1007 96.861857 316 2698 7 chr7D.!!$F1 2382
5 TraesCS7A01G478900 chr5D 2606198 2607511 1313 True 2266.000000 2266 97.727000 2742 4061 1 chr5D.!!$R1 1319
6 TraesCS7A01G478900 chr5D 445092958 445095932 2974 True 592.166667 850 96.095667 316 2698 6 chr5D.!!$R3 2382
7 TraesCS7A01G478900 chr1D 375790678 375791535 857 False 1435.000000 1435 96.767000 3197 4061 1 chr1D.!!$F2 864
8 TraesCS7A01G478900 chr1D 416236193 416237162 969 True 733.500000 1127 94.479000 2778 3882 2 chr1D.!!$R1 1104
9 TraesCS7A01G478900 chr3B 61990336 61992690 2354 True 623.500000 948 96.446000 1139 2698 4 chr3B.!!$R3 1559
10 TraesCS7A01G478900 chr6B 225650066 225650590 524 False 907.000000 907 97.905000 2720 3243 1 chr6B.!!$F2 523
11 TraesCS7A01G478900 chr6D 104063546 104066509 2963 False 463.975000 850 97.224000 316 2698 8 chr6D.!!$F1 2382
12 TraesCS7A01G478900 chr2B 741867037 741874226 7189 True 333.000000 339 90.836667 4203 4450 3 chr2B.!!$R3 247
13 TraesCS7A01G478900 chr1B 631135476 631136487 1011 False 257.500000 263 87.759500 2685 3189 2 chr1B.!!$F4 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.035056 AATGTTGGGAGAAGGCCGAG 60.035 55.000 0.00 0.0 0.00 4.63 F
238 239 0.036952 CGAGACAGAGGTGGTGCAAT 60.037 55.000 0.00 0.0 0.00 3.56 F
253 254 0.457337 GCAATTTGCAGCGAAGGAGG 60.457 55.000 16.35 0.0 44.26 4.30 F
254 255 0.457337 CAATTTGCAGCGAAGGAGGC 60.457 55.000 0.55 0.0 0.00 4.70 F
285 286 0.604578 GCAAAGAGGGCATGCTTCAA 59.395 50.000 18.92 0.0 37.12 2.69 F
288 289 0.969409 AAGAGGGCATGCTTCAAGGC 60.969 55.000 18.92 0.0 0.00 4.35 F
307 308 1.632046 CGGTGCACACGTTGGATACC 61.632 60.000 20.43 0.0 0.00 2.73 F
1726 4780 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1711 4765 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.00 0.0 0.0 34.99 4.45 R
1712 4766 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.00 0.0 0.0 34.99 4.00 R
1716 4770 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.00 0.0 0.0 34.99 3.96 R
1720 4774 1.729586 ACCTTGTGTGGGAGCTTCTA 58.270 50.00 0.0 0.0 0.00 2.10 R
1721 4775 1.729586 TACCTTGTGTGGGAGCTTCT 58.270 50.00 0.0 0.0 0.00 2.85 R
1722 4776 2.789409 ATACCTTGTGTGGGAGCTTC 57.211 50.00 0.0 0.0 0.00 3.86 R
1729 4783 2.872245 CGGCAGAATATACCTTGTGTGG 59.128 50.00 0.0 0.0 0.00 4.17 R
3752 8762 4.460263 ACCAGCAACAGATTGACACTTAA 58.540 39.13 0.0 0.0 38.15 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.050703 AGCTCCGCGAGTAATGTTG 57.949 52.632 8.23 0.00 31.39 3.33
19 20 0.460284 AGCTCCGCGAGTAATGTTGG 60.460 55.000 8.23 0.00 31.39 3.77
20 21 1.429148 GCTCCGCGAGTAATGTTGGG 61.429 60.000 8.23 0.00 31.39 4.12
21 22 0.174845 CTCCGCGAGTAATGTTGGGA 59.825 55.000 8.23 0.00 0.00 4.37
24 25 1.404986 CCGCGAGTAATGTTGGGAGAA 60.405 52.381 8.23 0.00 0.00 2.87
25 26 1.927174 CGCGAGTAATGTTGGGAGAAG 59.073 52.381 0.00 0.00 0.00 2.85
26 27 2.280628 GCGAGTAATGTTGGGAGAAGG 58.719 52.381 0.00 0.00 0.00 3.46
27 28 2.280628 CGAGTAATGTTGGGAGAAGGC 58.719 52.381 0.00 0.00 0.00 4.35
28 29 2.644676 GAGTAATGTTGGGAGAAGGCC 58.355 52.381 0.00 0.00 0.00 5.19
29 30 1.065418 AGTAATGTTGGGAGAAGGCCG 60.065 52.381 0.00 0.00 0.00 6.13
30 31 1.065709 GTAATGTTGGGAGAAGGCCGA 60.066 52.381 0.00 0.00 0.00 5.54
31 32 0.035056 AATGTTGGGAGAAGGCCGAG 60.035 55.000 0.00 0.00 0.00 4.63
32 33 1.915078 ATGTTGGGAGAAGGCCGAGG 61.915 60.000 0.00 0.00 0.00 4.63
35 36 3.157949 GGGAGAAGGCCGAGGAGG 61.158 72.222 0.00 0.00 44.97 4.30
46 47 4.500116 GAGGAGGACGCGCTGGAC 62.500 72.222 5.73 0.00 0.00 4.02
48 49 4.148825 GGAGGACGCGCTGGACAT 62.149 66.667 5.73 0.00 0.00 3.06
50 51 4.457496 AGGACGCGCTGGACATGG 62.457 66.667 5.73 0.00 0.00 3.66
57 58 4.828296 GCTGGACATGGGGGCTGG 62.828 72.222 0.00 0.00 0.00 4.85
58 59 4.828296 CTGGACATGGGGGCTGGC 62.828 72.222 0.00 0.00 0.00 4.85
83 84 3.541713 GGAGGCCGGTAGCTCCAG 61.542 72.222 1.90 0.00 43.05 3.86
86 87 4.537433 GGCCGGTAGCTCCAGCAG 62.537 72.222 1.90 0.00 41.13 4.24
95 96 4.320456 CTCCAGCAGCCACACCGT 62.320 66.667 0.00 0.00 0.00 4.83
96 97 4.314440 TCCAGCAGCCACACCGTC 62.314 66.667 0.00 0.00 0.00 4.79
98 99 4.662961 CAGCAGCCACACCGTCGA 62.663 66.667 0.00 0.00 0.00 4.20
99 100 4.363990 AGCAGCCACACCGTCGAG 62.364 66.667 0.00 0.00 0.00 4.04
101 102 4.363990 CAGCCACACCGTCGAGCT 62.364 66.667 0.00 0.00 0.00 4.09
102 103 4.363990 AGCCACACCGTCGAGCTG 62.364 66.667 0.00 0.00 31.23 4.24
103 104 4.664677 GCCACACCGTCGAGCTGT 62.665 66.667 0.00 0.00 0.00 4.40
106 107 4.664677 ACACCGTCGAGCTGTGGC 62.665 66.667 12.05 0.00 36.75 5.01
128 129 3.043713 TGAGCAAGCTCGCAACCG 61.044 61.111 16.45 0.00 45.48 4.44
145 146 3.550431 GCGCTGCCCTCTCCCATA 61.550 66.667 0.00 0.00 0.00 2.74
147 148 2.136878 CGCTGCCCTCTCCCATAGT 61.137 63.158 0.00 0.00 0.00 2.12
148 149 1.449353 GCTGCCCTCTCCCATAGTG 59.551 63.158 0.00 0.00 0.00 2.74
149 150 2.049627 GCTGCCCTCTCCCATAGTGG 62.050 65.000 0.00 0.00 38.40 4.00
150 151 2.049627 CTGCCCTCTCCCATAGTGGC 62.050 65.000 0.00 0.00 41.62 5.01
151 152 3.142393 CCCTCTCCCATAGTGGCG 58.858 66.667 0.00 0.00 37.51 5.69
152 153 2.511452 CCCTCTCCCATAGTGGCGG 61.511 68.421 0.00 0.00 37.51 6.13
153 154 2.511452 CCTCTCCCATAGTGGCGGG 61.511 68.421 0.00 0.00 44.60 6.13
156 157 2.366973 TCCCATAGTGGCGGGAGT 59.633 61.111 0.00 0.00 46.93 3.85
157 158 1.760875 TCCCATAGTGGCGGGAGTC 60.761 63.158 0.00 0.00 46.93 3.36
158 159 2.417516 CCATAGTGGCGGGAGTCG 59.582 66.667 0.00 0.00 42.76 4.18
185 186 2.571757 CCGCTTCGGTGAGCTGTA 59.428 61.111 0.00 0.00 42.73 2.74
186 187 1.141881 CCGCTTCGGTGAGCTGTAT 59.858 57.895 0.00 0.00 42.73 2.29
187 188 1.148157 CCGCTTCGGTGAGCTGTATG 61.148 60.000 0.00 0.00 42.73 2.39
188 189 0.179137 CGCTTCGGTGAGCTGTATGA 60.179 55.000 0.00 0.00 40.52 2.15
189 190 1.536922 CGCTTCGGTGAGCTGTATGAT 60.537 52.381 0.00 0.00 40.52 2.45
190 191 1.863454 GCTTCGGTGAGCTGTATGATG 59.137 52.381 0.00 0.00 39.57 3.07
191 192 2.739932 GCTTCGGTGAGCTGTATGATGT 60.740 50.000 0.00 0.00 39.57 3.06
192 193 2.584492 TCGGTGAGCTGTATGATGTG 57.416 50.000 0.00 0.00 0.00 3.21
193 194 0.933097 CGGTGAGCTGTATGATGTGC 59.067 55.000 0.00 0.00 0.00 4.57
194 195 1.472201 CGGTGAGCTGTATGATGTGCT 60.472 52.381 0.00 0.00 38.59 4.40
198 199 2.481854 GAGCTGTATGATGTGCTCTGG 58.518 52.381 0.00 0.00 45.78 3.86
200 201 1.590932 CTGTATGATGTGCTCTGGCC 58.409 55.000 0.00 0.00 37.74 5.36
201 202 0.911053 TGTATGATGTGCTCTGGCCA 59.089 50.000 4.71 4.71 37.74 5.36
202 203 1.491754 TGTATGATGTGCTCTGGCCAT 59.508 47.619 5.51 0.00 37.74 4.40
203 204 2.149578 GTATGATGTGCTCTGGCCATC 58.850 52.381 5.51 0.00 41.77 3.51
204 205 0.534427 ATGATGTGCTCTGGCCATCG 60.534 55.000 5.51 0.47 42.99 3.84
205 206 1.144716 GATGTGCTCTGGCCATCGA 59.855 57.895 5.51 0.00 36.87 3.59
206 207 1.153289 ATGTGCTCTGGCCATCGAC 60.153 57.895 5.51 1.19 37.74 4.20
207 208 2.887568 GTGCTCTGGCCATCGACG 60.888 66.667 5.51 0.00 37.74 5.12
208 209 3.068064 TGCTCTGGCCATCGACGA 61.068 61.111 5.51 0.00 37.74 4.20
210 211 1.880340 GCTCTGGCCATCGACGAAG 60.880 63.158 5.51 0.00 0.00 3.79
211 212 1.227089 CTCTGGCCATCGACGAAGG 60.227 63.158 14.65 14.65 0.00 3.46
212 213 2.892425 CTGGCCATCGACGAAGGC 60.892 66.667 30.75 30.75 44.53 4.35
214 215 2.586357 GGCCATCGACGAAGGCTC 60.586 66.667 34.85 24.16 44.63 4.70
216 217 1.153549 GCCATCGACGAAGGCTCTT 60.154 57.895 31.12 0.00 42.34 2.85
217 218 1.148759 GCCATCGACGAAGGCTCTTC 61.149 60.000 31.12 7.31 42.34 2.87
218 219 0.867753 CCATCGACGAAGGCTCTTCG 60.868 60.000 25.82 25.82 42.91 3.79
219 220 1.226717 ATCGACGAAGGCTCTTCGC 60.227 57.895 26.77 20.40 44.98 4.70
220 221 2.921538 ATCGACGAAGGCTCTTCGCG 62.922 60.000 26.77 26.88 44.98 5.87
222 223 1.870016 GACGAAGGCTCTTCGCGAG 60.870 63.158 26.77 3.89 44.98 5.03
223 224 2.254703 GACGAAGGCTCTTCGCGAGA 62.255 60.000 26.77 8.48 44.98 4.04
228 229 4.375723 GCTCTTCGCGAGACAGAG 57.624 61.111 25.15 25.15 42.62 3.35
229 230 1.226547 GCTCTTCGCGAGACAGAGG 60.227 63.158 28.39 15.67 42.62 3.69
230 231 1.928706 GCTCTTCGCGAGACAGAGGT 61.929 60.000 28.39 0.00 42.62 3.85
231 232 0.179176 CTCTTCGCGAGACAGAGGTG 60.179 60.000 22.85 4.49 42.62 4.00
232 233 1.153939 CTTCGCGAGACAGAGGTGG 60.154 63.158 9.59 0.00 41.84 4.61
233 234 1.867919 CTTCGCGAGACAGAGGTGGT 61.868 60.000 9.59 0.00 41.84 4.16
234 235 2.126307 CGCGAGACAGAGGTGGTG 60.126 66.667 0.00 0.00 0.00 4.17
235 236 2.433318 GCGAGACAGAGGTGGTGC 60.433 66.667 0.00 0.00 0.00 5.01
237 238 1.367471 CGAGACAGAGGTGGTGCAA 59.633 57.895 0.00 0.00 0.00 4.08
238 239 0.036952 CGAGACAGAGGTGGTGCAAT 60.037 55.000 0.00 0.00 0.00 3.56
239 240 1.609061 CGAGACAGAGGTGGTGCAATT 60.609 52.381 0.00 0.00 0.00 2.32
240 241 2.508526 GAGACAGAGGTGGTGCAATTT 58.491 47.619 0.00 0.00 0.00 1.82
241 242 2.227388 GAGACAGAGGTGGTGCAATTTG 59.773 50.000 0.00 0.00 0.00 2.32
242 243 0.675633 ACAGAGGTGGTGCAATTTGC 59.324 50.000 14.49 14.49 45.29 3.68
252 253 3.025866 GCAATTTGCAGCGAAGGAG 57.974 52.632 16.35 0.00 44.26 3.69
253 254 0.457337 GCAATTTGCAGCGAAGGAGG 60.457 55.000 16.35 0.00 44.26 4.30
254 255 0.457337 CAATTTGCAGCGAAGGAGGC 60.457 55.000 0.55 0.00 0.00 4.70
256 257 3.825160 TTTGCAGCGAAGGAGGCGT 62.825 57.895 0.00 0.00 35.00 5.68
258 259 3.793144 GCAGCGAAGGAGGCGTTG 61.793 66.667 0.00 0.00 41.85 4.10
259 260 3.121030 CAGCGAAGGAGGCGTTGG 61.121 66.667 0.00 0.00 36.52 3.77
260 261 3.311110 AGCGAAGGAGGCGTTGGA 61.311 61.111 0.00 0.00 35.00 3.53
261 262 2.125106 GCGAAGGAGGCGTTGGAT 60.125 61.111 0.00 0.00 0.00 3.41
262 263 2.464459 GCGAAGGAGGCGTTGGATG 61.464 63.158 0.00 0.00 0.00 3.51
263 264 2.464459 CGAAGGAGGCGTTGGATGC 61.464 63.158 0.00 0.00 0.00 3.91
270 271 4.049640 GCGTTGGATGCCGGCAAA 62.050 61.111 36.33 21.44 0.00 3.68
271 272 2.179018 CGTTGGATGCCGGCAAAG 59.821 61.111 36.33 15.82 0.00 2.77
272 273 2.331893 CGTTGGATGCCGGCAAAGA 61.332 57.895 36.33 17.24 0.00 2.52
273 274 1.508088 GTTGGATGCCGGCAAAGAG 59.492 57.895 36.33 0.00 0.00 2.85
274 275 1.678635 TTGGATGCCGGCAAAGAGG 60.679 57.895 36.33 0.00 0.00 3.69
281 282 2.753043 CGGCAAAGAGGGCATGCT 60.753 61.111 18.92 0.00 39.94 3.79
282 283 2.345760 CGGCAAAGAGGGCATGCTT 61.346 57.895 18.92 6.28 39.94 3.91
283 284 1.514553 GGCAAAGAGGGCATGCTTC 59.485 57.895 18.92 15.33 39.94 3.86
284 285 1.252904 GGCAAAGAGGGCATGCTTCA 61.253 55.000 18.92 0.00 39.94 3.02
285 286 0.604578 GCAAAGAGGGCATGCTTCAA 59.395 50.000 18.92 0.00 37.12 2.69
286 287 1.403780 GCAAAGAGGGCATGCTTCAAG 60.404 52.381 18.92 10.24 37.12 3.02
287 288 1.203994 CAAAGAGGGCATGCTTCAAGG 59.796 52.381 18.92 5.60 0.00 3.61
288 289 0.969409 AAGAGGGCATGCTTCAAGGC 60.969 55.000 18.92 0.00 0.00 4.35
289 290 2.753043 AGGGCATGCTTCAAGGCG 60.753 61.111 18.92 0.00 34.52 5.52
290 291 3.830192 GGGCATGCTTCAAGGCGG 61.830 66.667 18.92 0.00 34.52 6.13
292 293 2.180017 GCATGCTTCAAGGCGGTG 59.820 61.111 11.37 0.00 34.52 4.94
293 294 2.180017 CATGCTTCAAGGCGGTGC 59.820 61.111 0.00 0.00 34.52 5.01
294 295 2.282391 ATGCTTCAAGGCGGTGCA 60.282 55.556 0.00 0.00 38.05 4.57
295 296 2.629656 ATGCTTCAAGGCGGTGCAC 61.630 57.895 8.80 8.80 36.44 4.57
296 297 3.286751 GCTTCAAGGCGGTGCACA 61.287 61.111 20.43 0.00 0.00 4.57
297 298 2.639286 CTTCAAGGCGGTGCACAC 59.361 61.111 20.43 10.00 0.00 3.82
298 299 3.240606 CTTCAAGGCGGTGCACACG 62.241 63.158 20.43 19.79 0.00 4.49
299 300 4.539083 TCAAGGCGGTGCACACGT 62.539 61.111 20.43 8.85 0.00 4.49
300 301 3.582120 CAAGGCGGTGCACACGTT 61.582 61.111 20.43 14.49 0.00 3.99
301 302 3.582120 AAGGCGGTGCACACGTTG 61.582 61.111 20.43 3.57 0.00 4.10
304 305 3.353836 GCGGTGCACACGTTGGAT 61.354 61.111 20.43 0.00 0.00 3.41
306 307 1.785321 CGGTGCACACGTTGGATAC 59.215 57.895 20.43 0.00 0.00 2.24
307 308 1.632046 CGGTGCACACGTTGGATACC 61.632 60.000 20.43 0.00 0.00 2.73
308 309 1.632046 GGTGCACACGTTGGATACCG 61.632 60.000 20.43 0.00 0.00 4.02
309 310 2.030401 TGCACACGTTGGATACCGC 61.030 57.895 0.00 0.00 0.00 5.68
310 311 3.077705 CACACGTTGGATACCGCG 58.922 61.111 0.00 0.00 38.43 6.46
311 312 2.812178 ACACGTTGGATACCGCGC 60.812 61.111 0.00 0.00 36.39 6.86
312 313 2.508439 CACGTTGGATACCGCGCT 60.508 61.111 5.56 0.00 36.39 5.92
313 314 2.508439 ACGTTGGATACCGCGCTG 60.508 61.111 5.56 0.00 36.39 5.18
314 315 2.508439 CGTTGGATACCGCGCTGT 60.508 61.111 10.01 10.01 0.00 4.40
464 485 4.227134 CGTCATCCCCGCCTCCTG 62.227 72.222 0.00 0.00 0.00 3.86
465 486 4.554036 GTCATCCCCGCCTCCTGC 62.554 72.222 0.00 0.00 0.00 4.85
489 510 3.851128 GCTACCACTCCCGCCTCC 61.851 72.222 0.00 0.00 0.00 4.30
491 512 1.686110 CTACCACTCCCGCCTCCTT 60.686 63.158 0.00 0.00 0.00 3.36
492 513 1.677637 CTACCACTCCCGCCTCCTTC 61.678 65.000 0.00 0.00 0.00 3.46
1362 1430 9.814899 CATACAGAGTTCAGTCTGATTCTAAAT 57.185 33.333 17.00 9.49 46.02 1.40
1425 1604 5.415701 TCTTCAGGTCTACATTTTCCATTGC 59.584 40.000 0.00 0.00 0.00 3.56
1426 1605 4.016444 TCAGGTCTACATTTTCCATTGCC 58.984 43.478 0.00 0.00 0.00 4.52
1427 1606 3.131046 CAGGTCTACATTTTCCATTGCCC 59.869 47.826 0.00 0.00 0.00 5.36
1428 1607 3.011708 AGGTCTACATTTTCCATTGCCCT 59.988 43.478 0.00 0.00 0.00 5.19
1429 1608 3.131046 GGTCTACATTTTCCATTGCCCTG 59.869 47.826 0.00 0.00 0.00 4.45
1430 1609 3.131046 GTCTACATTTTCCATTGCCCTGG 59.869 47.826 0.00 0.00 37.66 4.45
1431 1610 2.323999 ACATTTTCCATTGCCCTGGA 57.676 45.000 0.00 0.35 43.62 3.86
1433 1612 2.181975 CATTTTCCATTGCCCTGGACT 58.818 47.619 3.93 0.00 44.97 3.85
1434 1613 2.397044 TTTTCCATTGCCCTGGACTT 57.603 45.000 3.93 0.00 44.97 3.01
1435 1614 3.534357 TTTTCCATTGCCCTGGACTTA 57.466 42.857 3.93 0.00 44.97 2.24
1437 1616 2.734755 TCCATTGCCCTGGACTTATG 57.265 50.000 0.00 0.00 40.43 1.90
1438 1617 2.204463 TCCATTGCCCTGGACTTATGA 58.796 47.619 0.00 0.00 40.43 2.15
1439 1618 2.173356 TCCATTGCCCTGGACTTATGAG 59.827 50.000 0.00 0.00 40.43 2.90
1442 1621 4.385199 CCATTGCCCTGGACTTATGAGTAA 60.385 45.833 0.00 0.00 38.69 2.24
1458 1637 9.672086 CTTATGAGTAAGTAGCATACAGAGTTC 57.328 37.037 0.00 0.00 46.26 3.01
1459 1638 7.646548 ATGAGTAAGTAGCATACAGAGTTCA 57.353 36.000 0.00 0.00 46.26 3.18
1462 1641 7.090953 AGTAAGTAGCATACAGAGTTCAGTC 57.909 40.000 0.00 0.00 46.26 3.51
1464 1643 5.574891 AGTAGCATACAGAGTTCAGTCTG 57.425 43.478 9.71 9.71 46.26 3.51
1465 1644 5.257262 AGTAGCATACAGAGTTCAGTCTGA 58.743 41.667 17.00 0.00 46.02 3.27
1467 1646 5.674052 AGCATACAGAGTTCAGTCTGATT 57.326 39.130 17.00 0.00 46.02 2.57
1468 1647 5.659463 AGCATACAGAGTTCAGTCTGATTC 58.341 41.667 17.00 5.18 46.02 2.52
1469 1648 5.421693 AGCATACAGAGTTCAGTCTGATTCT 59.578 40.000 17.00 7.39 46.02 2.40
1470 1649 6.605194 AGCATACAGAGTTCAGTCTGATTCTA 59.395 38.462 17.00 1.37 46.02 2.10
1471 1650 7.123397 AGCATACAGAGTTCAGTCTGATTCTAA 59.877 37.037 17.00 8.37 46.02 2.10
1476 1655 9.646427 ACAGAGTTCAGTCTGATTCTAAATAAC 57.354 33.333 17.00 3.16 46.02 1.89
1500 1679 8.594881 ACAAGAGTAGAAAATATATTCTGCCG 57.405 34.615 0.00 0.00 41.33 5.69
1501 1680 8.421784 ACAAGAGTAGAAAATATATTCTGCCGA 58.578 33.333 0.00 0.00 41.33 5.54
1502 1681 8.920665 CAAGAGTAGAAAATATATTCTGCCGAG 58.079 37.037 0.00 0.00 41.33 4.63
1503 1682 8.184304 AGAGTAGAAAATATATTCTGCCGAGT 57.816 34.615 0.00 0.00 41.33 4.18
1504 1683 9.298250 AGAGTAGAAAATATATTCTGCCGAGTA 57.702 33.333 0.00 0.00 41.33 2.59
1505 1684 9.562583 GAGTAGAAAATATATTCTGCCGAGTAG 57.437 37.037 0.00 0.00 41.33 2.57
1506 1685 9.298250 AGTAGAAAATATATTCTGCCGAGTAGA 57.702 33.333 0.00 0.00 41.33 2.59
1507 1686 9.909644 GTAGAAAATATATTCTGCCGAGTAGAA 57.090 33.333 0.00 6.83 39.87 2.10
1516 1695 7.954788 ATTCTGCCGAGTAGAAAATATCTTC 57.045 36.000 8.09 0.00 37.75 2.87
1517 1696 6.465439 TCTGCCGAGTAGAAAATATCTTCA 57.535 37.500 0.00 0.00 39.71 3.02
1518 1697 6.507900 TCTGCCGAGTAGAAAATATCTTCAG 58.492 40.000 0.00 0.00 39.71 3.02
1519 1698 5.601662 TGCCGAGTAGAAAATATCTTCAGG 58.398 41.667 0.00 0.00 39.71 3.86
1521 1700 5.692654 GCCGAGTAGAAAATATCTTCAGGTC 59.307 44.000 0.00 0.00 39.71 3.85
1522 1701 6.461788 GCCGAGTAGAAAATATCTTCAGGTCT 60.462 42.308 0.00 0.00 39.71 3.85
1523 1702 7.255520 GCCGAGTAGAAAATATCTTCAGGTCTA 60.256 40.741 0.00 0.00 39.71 2.59
1524 1703 8.077386 CCGAGTAGAAAATATCTTCAGGTCTAC 58.923 40.741 0.00 0.00 39.71 2.59
1525 1704 8.622157 CGAGTAGAAAATATCTTCAGGTCTACA 58.378 37.037 9.79 0.00 38.83 2.74
1532 1711 9.753674 AAAATATCTTCAGGTCTACATTTTCCA 57.246 29.630 0.00 0.00 0.00 3.53
1533 1712 9.927081 AAATATCTTCAGGTCTACATTTTCCAT 57.073 29.630 0.00 0.00 0.00 3.41
1700 4754 3.633525 TCTGCATCAAACTGCTTTCACTT 59.366 39.130 0.00 0.00 42.75 3.16
1701 4755 4.821260 TCTGCATCAAACTGCTTTCACTTA 59.179 37.500 0.00 0.00 42.75 2.24
1702 4756 5.474532 TCTGCATCAAACTGCTTTCACTTAT 59.525 36.000 0.00 0.00 42.75 1.73
1703 4757 5.463286 TGCATCAAACTGCTTTCACTTATG 58.537 37.500 0.00 0.00 42.75 1.90
1704 4758 4.860907 GCATCAAACTGCTTTCACTTATGG 59.139 41.667 0.00 0.00 39.12 2.74
1705 4759 5.404946 CATCAAACTGCTTTCACTTATGGG 58.595 41.667 0.00 0.00 0.00 4.00
1706 4760 4.724399 TCAAACTGCTTTCACTTATGGGA 58.276 39.130 0.00 0.00 0.00 4.37
1707 4761 4.518970 TCAAACTGCTTTCACTTATGGGAC 59.481 41.667 0.00 0.00 0.00 4.46
1722 4776 3.768633 GGACAGACCCAGTGCATAG 57.231 57.895 0.00 0.00 0.00 2.23
1723 4777 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
1724 4778 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
1725 4779 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
1726 4780 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
1727 4781 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
1728 4782 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
1729 4783 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
1730 4784 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
1731 4785 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
1732 4786 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
1733 4787 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
1734 4788 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
1735 4789 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
1736 4790 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
1737 4791 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
1738 4792 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
1808 4862 9.274206 GATTATCTACAAGGGTTATGTCCTTTC 57.726 37.037 0.00 0.00 42.25 2.62
1915 4969 2.446435 TCCACTTTCCTTGCTAATGGC 58.554 47.619 0.00 0.00 42.22 4.40
2012 5070 8.496751 CATGTATAGATGCTTTCAGAGAACATG 58.503 37.037 0.00 0.00 0.00 3.21
2022 5080 9.645059 TGCTTTCAGAGAACATGTATATATAGC 57.355 33.333 0.00 3.02 0.00 2.97
2023 5081 9.868277 GCTTTCAGAGAACATGTATATATAGCT 57.132 33.333 0.00 0.00 0.00 3.32
2025 5083 9.645059 TTTCAGAGAACATGTATATATAGCTGC 57.355 33.333 0.00 0.00 0.00 5.25
2305 6736 8.651588 GTGAGATGACATACAAGTGAGTTTAAG 58.348 37.037 0.00 0.00 0.00 1.85
2327 6758 3.059570 GTCGTGAGAGTGAAATAGCAACG 59.940 47.826 0.00 0.00 43.49 4.10
2426 6859 6.015095 CAGCTGGAAGAAGGTAAAAATCCTTT 60.015 38.462 5.57 0.00 44.19 3.11
2427 6860 6.554982 AGCTGGAAGAAGGTAAAAATCCTTTT 59.445 34.615 0.00 0.00 44.19 2.27
3906 8916 4.773149 ACGAAAAATAAATAAGGTGGGGCA 59.227 37.500 0.00 0.00 0.00 5.36
3977 8987 5.164196 GCACACTAAAATGCACACAAATACG 60.164 40.000 0.00 0.00 41.65 3.06
4068 9078 6.605119 TCTCTCCTTTTGTCTTCCATTTTCT 58.395 36.000 0.00 0.00 0.00 2.52
4120 9130 2.685388 TCGGAAAAATTGACACACAGCA 59.315 40.909 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.174845 TCTCCCAACATTACTCGCGG 59.825 55.000 6.13 0.00 0.00 6.46
5 6 1.927174 CTTCTCCCAACATTACTCGCG 59.073 52.381 0.00 0.00 0.00 5.87
6 7 2.280628 CCTTCTCCCAACATTACTCGC 58.719 52.381 0.00 0.00 0.00 5.03
7 8 2.280628 GCCTTCTCCCAACATTACTCG 58.719 52.381 0.00 0.00 0.00 4.18
8 9 2.644676 GGCCTTCTCCCAACATTACTC 58.355 52.381 0.00 0.00 0.00 2.59
10 11 1.065709 TCGGCCTTCTCCCAACATTAC 60.066 52.381 0.00 0.00 0.00 1.89
13 14 1.604378 CTCGGCCTTCTCCCAACAT 59.396 57.895 0.00 0.00 0.00 2.71
14 15 2.592993 CCTCGGCCTTCTCCCAACA 61.593 63.158 0.00 0.00 0.00 3.33
18 19 3.157949 CCTCCTCGGCCTTCTCCC 61.158 72.222 0.00 0.00 0.00 4.30
19 20 2.042843 TCCTCCTCGGCCTTCTCC 60.043 66.667 0.00 0.00 0.00 3.71
20 21 2.776913 CGTCCTCCTCGGCCTTCTC 61.777 68.421 0.00 0.00 0.00 2.87
21 22 2.756283 CGTCCTCCTCGGCCTTCT 60.756 66.667 0.00 0.00 0.00 2.85
29 30 4.500116 GTCCAGCGCGTCCTCCTC 62.500 72.222 8.43 0.00 0.00 3.71
31 32 4.148825 ATGTCCAGCGCGTCCTCC 62.149 66.667 8.43 0.00 0.00 4.30
32 33 2.887568 CATGTCCAGCGCGTCCTC 60.888 66.667 8.43 0.00 0.00 3.71
40 41 4.828296 CCAGCCCCCATGTCCAGC 62.828 72.222 0.00 0.00 0.00 4.85
41 42 4.828296 GCCAGCCCCCATGTCCAG 62.828 72.222 0.00 0.00 0.00 3.86
66 67 3.541713 CTGGAGCTACCGGCCTCC 61.542 72.222 22.83 22.83 43.05 4.30
78 79 4.320456 ACGGTGTGGCTGCTGGAG 62.320 66.667 0.00 0.00 0.00 3.86
79 80 4.314440 GACGGTGTGGCTGCTGGA 62.314 66.667 0.00 0.00 0.00 3.86
81 82 4.662961 TCGACGGTGTGGCTGCTG 62.663 66.667 0.00 0.00 0.00 4.41
108 109 3.043713 TTGCGAGCTTGCTCACGG 61.044 61.111 26.07 7.39 35.36 4.94
109 110 2.171940 GTTGCGAGCTTGCTCACG 59.828 61.111 26.07 6.69 35.36 4.35
110 111 2.558313 GGTTGCGAGCTTGCTCAC 59.442 61.111 26.07 20.75 35.36 3.51
111 112 3.043713 CGGTTGCGAGCTTGCTCA 61.044 61.111 26.07 10.70 35.36 4.26
112 113 4.451652 GCGGTTGCGAGCTTGCTC 62.452 66.667 26.07 17.95 35.36 4.26
128 129 3.527775 CTATGGGAGAGGGCAGCGC 62.528 68.421 0.00 0.00 0.00 5.92
130 131 1.449353 CACTATGGGAGAGGGCAGC 59.551 63.158 0.00 0.00 0.00 5.25
132 133 2.072487 GCCACTATGGGAGAGGGCA 61.072 63.158 0.00 0.00 43.93 5.36
133 134 2.832498 GCCACTATGGGAGAGGGC 59.168 66.667 0.00 0.00 40.31 5.19
135 136 3.142393 CCGCCACTATGGGAGAGG 58.858 66.667 0.00 0.00 38.19 3.69
141 142 2.417516 CGACTCCCGCCACTATGG 59.582 66.667 0.00 0.00 41.55 2.74
170 171 1.863454 CATCATACAGCTCACCGAAGC 59.137 52.381 0.00 0.00 42.82 3.86
171 172 2.862536 CACATCATACAGCTCACCGAAG 59.137 50.000 0.00 0.00 0.00 3.79
172 173 2.892374 CACATCATACAGCTCACCGAA 58.108 47.619 0.00 0.00 0.00 4.30
173 174 1.471501 GCACATCATACAGCTCACCGA 60.472 52.381 0.00 0.00 0.00 4.69
174 175 0.933097 GCACATCATACAGCTCACCG 59.067 55.000 0.00 0.00 0.00 4.94
180 181 0.942962 GCCAGAGCACATCATACAGC 59.057 55.000 0.00 0.00 39.53 4.40
181 182 1.134310 TGGCCAGAGCACATCATACAG 60.134 52.381 0.00 0.00 42.56 2.74
182 183 0.911053 TGGCCAGAGCACATCATACA 59.089 50.000 0.00 0.00 42.56 2.29
183 184 2.149578 GATGGCCAGAGCACATCATAC 58.850 52.381 13.05 0.00 42.02 2.39
184 185 1.270465 CGATGGCCAGAGCACATCATA 60.270 52.381 13.05 0.00 42.29 2.15
185 186 0.534427 CGATGGCCAGAGCACATCAT 60.534 55.000 13.05 0.00 42.29 2.45
186 187 1.153309 CGATGGCCAGAGCACATCA 60.153 57.895 13.05 0.00 42.29 3.07
187 188 1.144716 TCGATGGCCAGAGCACATC 59.855 57.895 13.05 0.00 42.56 3.06
188 189 1.153289 GTCGATGGCCAGAGCACAT 60.153 57.895 13.05 0.00 42.56 3.21
189 190 2.265739 GTCGATGGCCAGAGCACA 59.734 61.111 13.05 0.00 42.56 4.57
190 191 2.835701 TTCGTCGATGGCCAGAGCAC 62.836 60.000 13.05 4.12 42.56 4.40
191 192 2.563050 CTTCGTCGATGGCCAGAGCA 62.563 60.000 13.05 0.00 42.56 4.26
192 193 1.880340 CTTCGTCGATGGCCAGAGC 60.880 63.158 13.05 1.78 38.76 4.09
193 194 1.227089 CCTTCGTCGATGGCCAGAG 60.227 63.158 13.05 7.86 0.00 3.35
194 195 2.892640 CCTTCGTCGATGGCCAGA 59.107 61.111 13.05 0.00 0.00 3.86
195 196 2.892425 GCCTTCGTCGATGGCCAG 60.892 66.667 31.78 11.61 44.04 4.85
204 205 1.870016 CTCGCGAAGAGCCTTCGTC 60.870 63.158 26.93 20.63 44.76 4.20
205 206 2.179517 CTCGCGAAGAGCCTTCGT 59.820 61.111 26.93 0.74 44.76 3.85
206 207 1.870016 GTCTCGCGAAGAGCCTTCG 60.870 63.158 24.27 24.27 46.44 3.79
207 208 0.800300 CTGTCTCGCGAAGAGCCTTC 60.800 60.000 11.33 5.20 46.44 3.46
208 209 1.214062 CTGTCTCGCGAAGAGCCTT 59.786 57.895 11.33 0.00 46.44 4.35
210 211 1.226547 CTCTGTCTCGCGAAGAGCC 60.227 63.158 20.03 6.37 46.44 4.70
211 212 1.226547 CCTCTGTCTCGCGAAGAGC 60.227 63.158 24.45 10.41 46.44 4.09
214 215 1.153939 CCACCTCTGTCTCGCGAAG 60.154 63.158 11.33 4.88 0.00 3.79
216 217 2.282251 ACCACCTCTGTCTCGCGA 60.282 61.111 9.26 9.26 0.00 5.87
217 218 2.126307 CACCACCTCTGTCTCGCG 60.126 66.667 0.00 0.00 0.00 5.87
218 219 2.433318 GCACCACCTCTGTCTCGC 60.433 66.667 0.00 0.00 0.00 5.03
219 220 0.036952 ATTGCACCACCTCTGTCTCG 60.037 55.000 0.00 0.00 0.00 4.04
220 221 2.191128 AATTGCACCACCTCTGTCTC 57.809 50.000 0.00 0.00 0.00 3.36
222 223 1.336240 GCAAATTGCACCACCTCTGTC 60.336 52.381 13.73 0.00 44.26 3.51
223 224 0.675633 GCAAATTGCACCACCTCTGT 59.324 50.000 13.73 0.00 44.26 3.41
224 225 3.502237 GCAAATTGCACCACCTCTG 57.498 52.632 13.73 0.00 44.26 3.35
234 235 0.457337 CCTCCTTCGCTGCAAATTGC 60.457 55.000 11.58 11.58 45.29 3.56
235 236 0.457337 GCCTCCTTCGCTGCAAATTG 60.457 55.000 0.00 0.00 0.00 2.32
237 238 2.401766 CGCCTCCTTCGCTGCAAAT 61.402 57.895 0.00 0.00 0.00 2.32
238 239 3.049674 CGCCTCCTTCGCTGCAAA 61.050 61.111 0.00 0.00 0.00 3.68
239 240 3.825160 AACGCCTCCTTCGCTGCAA 62.825 57.895 0.00 0.00 0.00 4.08
240 241 4.314440 AACGCCTCCTTCGCTGCA 62.314 61.111 0.00 0.00 0.00 4.41
241 242 3.793144 CAACGCCTCCTTCGCTGC 61.793 66.667 0.00 0.00 0.00 5.25
242 243 2.859273 ATCCAACGCCTCCTTCGCTG 62.859 60.000 0.00 0.00 0.00 5.18
243 244 2.660064 ATCCAACGCCTCCTTCGCT 61.660 57.895 0.00 0.00 0.00 4.93
244 245 2.125106 ATCCAACGCCTCCTTCGC 60.125 61.111 0.00 0.00 0.00 4.70
245 246 2.464459 GCATCCAACGCCTCCTTCG 61.464 63.158 0.00 0.00 0.00 3.79
246 247 2.115291 GGCATCCAACGCCTCCTTC 61.115 63.158 0.00 0.00 46.56 3.46
247 248 2.044946 GGCATCCAACGCCTCCTT 60.045 61.111 0.00 0.00 46.56 3.36
253 254 3.969642 CTTTGCCGGCATCCAACGC 62.970 63.158 33.25 0.00 0.00 4.84
254 255 2.179018 CTTTGCCGGCATCCAACG 59.821 61.111 33.25 9.23 0.00 4.10
256 257 1.678635 CCTCTTTGCCGGCATCCAA 60.679 57.895 33.25 21.09 0.00 3.53
258 259 2.830370 CCCTCTTTGCCGGCATCC 60.830 66.667 33.25 0.00 0.00 3.51
259 260 3.521796 GCCCTCTTTGCCGGCATC 61.522 66.667 33.25 9.69 42.52 3.91
262 263 3.830192 CATGCCCTCTTTGCCGGC 61.830 66.667 22.73 22.73 43.32 6.13
263 264 3.830192 GCATGCCCTCTTTGCCGG 61.830 66.667 6.36 0.00 0.00 6.13
264 265 2.275547 GAAGCATGCCCTCTTTGCCG 62.276 60.000 15.66 0.00 37.07 5.69
266 267 0.604578 TTGAAGCATGCCCTCTTTGC 59.395 50.000 15.66 0.00 36.63 3.68
267 268 1.203994 CCTTGAAGCATGCCCTCTTTG 59.796 52.381 15.66 6.08 0.00 2.77
268 269 1.553706 CCTTGAAGCATGCCCTCTTT 58.446 50.000 15.66 0.50 0.00 2.52
269 270 0.969409 GCCTTGAAGCATGCCCTCTT 60.969 55.000 15.66 0.95 0.00 2.85
270 271 1.379576 GCCTTGAAGCATGCCCTCT 60.380 57.895 15.66 0.00 0.00 3.69
271 272 2.768492 CGCCTTGAAGCATGCCCTC 61.768 63.158 15.66 12.26 0.00 4.30
272 273 2.753043 CGCCTTGAAGCATGCCCT 60.753 61.111 15.66 0.80 0.00 5.19
273 274 3.830192 CCGCCTTGAAGCATGCCC 61.830 66.667 15.66 7.45 0.00 5.36
274 275 3.064324 ACCGCCTTGAAGCATGCC 61.064 61.111 15.66 0.00 0.00 4.40
277 278 2.282391 TGCACCGCCTTGAAGCAT 60.282 55.556 0.00 0.00 0.00 3.79
278 279 3.286751 GTGCACCGCCTTGAAGCA 61.287 61.111 5.22 0.00 0.00 3.91
281 282 3.276091 CGTGTGCACCGCCTTGAA 61.276 61.111 15.69 0.00 0.00 2.69
282 283 4.539083 ACGTGTGCACCGCCTTGA 62.539 61.111 22.27 0.00 0.00 3.02
283 284 3.582120 AACGTGTGCACCGCCTTG 61.582 61.111 22.27 6.59 0.00 3.61
284 285 3.582120 CAACGTGTGCACCGCCTT 61.582 61.111 22.27 11.12 0.00 4.35
287 288 2.030401 TATCCAACGTGTGCACCGC 61.030 57.895 22.27 11.91 0.00 5.68
288 289 1.632046 GGTATCCAACGTGTGCACCG 61.632 60.000 21.20 21.20 0.00 4.94
289 290 1.632046 CGGTATCCAACGTGTGCACC 61.632 60.000 15.69 4.74 0.00 5.01
290 291 1.785321 CGGTATCCAACGTGTGCAC 59.215 57.895 10.75 10.75 0.00 4.57
292 293 2.782615 GCGGTATCCAACGTGTGC 59.217 61.111 0.00 0.00 0.00 4.57
293 294 3.077705 CGCGGTATCCAACGTGTG 58.922 61.111 0.00 0.00 36.01 3.82
294 295 2.812178 GCGCGGTATCCAACGTGT 60.812 61.111 8.83 0.00 42.11 4.49
295 296 2.508439 AGCGCGGTATCCAACGTG 60.508 61.111 10.12 0.00 42.90 4.49
296 297 2.508439 CAGCGCGGTATCCAACGT 60.508 61.111 11.92 0.00 0.00 3.99
297 298 2.508439 ACAGCGCGGTATCCAACG 60.508 61.111 12.68 0.00 0.00 4.10
298 299 2.461110 CCACAGCGCGGTATCCAAC 61.461 63.158 14.13 0.00 0.00 3.77
299 300 2.125310 CCACAGCGCGGTATCCAA 60.125 61.111 14.13 0.00 0.00 3.53
300 301 2.457743 AAACCACAGCGCGGTATCCA 62.458 55.000 14.13 0.00 34.99 3.41
301 302 1.303091 AAAACCACAGCGCGGTATCC 61.303 55.000 14.13 0.00 34.99 2.59
302 303 0.519961 AAAAACCACAGCGCGGTATC 59.480 50.000 14.13 0.00 34.99 2.24
303 304 2.636299 AAAAACCACAGCGCGGTAT 58.364 47.368 14.13 0.00 34.99 2.73
304 305 4.144418 AAAAACCACAGCGCGGTA 57.856 50.000 14.13 0.00 34.99 4.02
471 492 4.208686 GAGGCGGGAGTGGTAGCG 62.209 72.222 0.00 0.00 0.00 4.26
472 493 3.851128 GGAGGCGGGAGTGGTAGC 61.851 72.222 0.00 0.00 0.00 3.58
473 494 1.677637 GAAGGAGGCGGGAGTGGTAG 61.678 65.000 0.00 0.00 0.00 3.18
475 496 3.003763 GAAGGAGGCGGGAGTGGT 61.004 66.667 0.00 0.00 0.00 4.16
476 497 3.787001 GGAAGGAGGCGGGAGTGG 61.787 72.222 0.00 0.00 0.00 4.00
477 498 4.148825 CGGAAGGAGGCGGGAGTG 62.149 72.222 0.00 0.00 0.00 3.51
752 773 2.435059 GGAGGTGTTCGGCTGCTC 60.435 66.667 0.00 0.00 0.00 4.26
1425 1604 4.649674 TGCTACTTACTCATAAGTCCAGGG 59.350 45.833 3.06 0.00 46.73 4.45
1426 1605 5.854010 TGCTACTTACTCATAAGTCCAGG 57.146 43.478 3.06 0.00 46.73 4.45
1427 1606 7.941919 TGTATGCTACTTACTCATAAGTCCAG 58.058 38.462 3.06 0.00 46.73 3.86
1428 1607 7.778382 TCTGTATGCTACTTACTCATAAGTCCA 59.222 37.037 3.06 3.70 46.73 4.02
1429 1608 8.167605 TCTGTATGCTACTTACTCATAAGTCC 57.832 38.462 3.06 0.00 46.73 3.85
1430 1609 8.842280 ACTCTGTATGCTACTTACTCATAAGTC 58.158 37.037 3.06 0.00 46.73 3.01
1433 1612 9.185680 TGAACTCTGTATGCTACTTACTCATAA 57.814 33.333 0.00 0.00 0.00 1.90
1434 1613 8.747538 TGAACTCTGTATGCTACTTACTCATA 57.252 34.615 0.00 0.00 0.00 2.15
1435 1614 7.340743 ACTGAACTCTGTATGCTACTTACTCAT 59.659 37.037 0.00 0.00 0.00 2.90
1437 1616 7.066525 AGACTGAACTCTGTATGCTACTTACTC 59.933 40.741 0.00 0.00 0.00 2.59
1438 1617 6.887545 AGACTGAACTCTGTATGCTACTTACT 59.112 38.462 0.00 0.00 0.00 2.24
1439 1618 6.970043 CAGACTGAACTCTGTATGCTACTTAC 59.030 42.308 0.00 0.00 34.10 2.34
1442 1621 5.257262 TCAGACTGAACTCTGTATGCTACT 58.743 41.667 1.64 0.00 39.08 2.57
1444 1623 6.605194 AGAATCAGACTGAACTCTGTATGCTA 59.395 38.462 9.70 0.00 39.08 3.49
1445 1624 5.421693 AGAATCAGACTGAACTCTGTATGCT 59.578 40.000 9.70 0.00 39.08 3.79
1446 1625 5.659463 AGAATCAGACTGAACTCTGTATGC 58.341 41.667 9.70 0.00 39.08 3.14
1447 1626 9.814899 ATTTAGAATCAGACTGAACTCTGTATG 57.185 33.333 22.06 5.33 39.08 2.39
1450 1629 9.646427 GTTATTTAGAATCAGACTGAACTCTGT 57.354 33.333 22.06 14.02 39.08 3.41
1451 1630 9.645059 TGTTATTTAGAATCAGACTGAACTCTG 57.355 33.333 22.06 4.77 39.35 3.35
1475 1654 8.421784 TCGGCAGAATATATTTTCTACTCTTGT 58.578 33.333 7.94 0.00 34.21 3.16
1476 1655 8.818141 TCGGCAGAATATATTTTCTACTCTTG 57.182 34.615 7.94 0.00 34.21 3.02
1478 1657 8.184304 ACTCGGCAGAATATATTTTCTACTCT 57.816 34.615 7.94 0.00 34.21 3.24
1479 1658 9.562583 CTACTCGGCAGAATATATTTTCTACTC 57.437 37.037 7.94 2.17 34.21 2.59
1480 1659 9.298250 TCTACTCGGCAGAATATATTTTCTACT 57.702 33.333 7.94 0.00 34.21 2.57
1490 1669 9.646427 GAAGATATTTTCTACTCGGCAGAATAT 57.354 33.333 0.00 0.00 33.05 1.28
1492 1671 7.500992 TGAAGATATTTTCTACTCGGCAGAAT 58.499 34.615 7.44 0.00 33.05 2.40
1493 1672 6.873997 TGAAGATATTTTCTACTCGGCAGAA 58.126 36.000 7.44 0.00 33.05 3.02
1494 1673 6.461648 CCTGAAGATATTTTCTACTCGGCAGA 60.462 42.308 7.44 0.00 33.05 4.26
1497 1676 5.602628 ACCTGAAGATATTTTCTACTCGGC 58.397 41.667 7.44 0.00 33.05 5.54
1498 1677 7.045126 AGACCTGAAGATATTTTCTACTCGG 57.955 40.000 7.44 3.52 33.05 4.63
1499 1678 8.622157 TGTAGACCTGAAGATATTTTCTACTCG 58.378 37.037 7.44 0.00 36.49 4.18
1506 1685 9.753674 TGGAAAATGTAGACCTGAAGATATTTT 57.246 29.630 0.00 0.00 31.45 1.82
1507 1686 9.927081 ATGGAAAATGTAGACCTGAAGATATTT 57.073 29.630 0.00 0.00 0.00 1.40
1508 1687 9.927081 AATGGAAAATGTAGACCTGAAGATATT 57.073 29.630 0.00 0.00 0.00 1.28
1510 1689 7.283127 GCAATGGAAAATGTAGACCTGAAGATA 59.717 37.037 0.00 0.00 0.00 1.98
1511 1690 6.096001 GCAATGGAAAATGTAGACCTGAAGAT 59.904 38.462 0.00 0.00 0.00 2.40
1513 1692 5.393461 GGCAATGGAAAATGTAGACCTGAAG 60.393 44.000 0.00 0.00 0.00 3.02
1515 1694 4.016444 GGCAATGGAAAATGTAGACCTGA 58.984 43.478 0.00 0.00 0.00 3.86
1516 1695 3.131046 GGGCAATGGAAAATGTAGACCTG 59.869 47.826 0.00 0.00 0.00 4.00
1517 1696 3.011708 AGGGCAATGGAAAATGTAGACCT 59.988 43.478 0.00 0.00 0.00 3.85
1518 1697 3.131046 CAGGGCAATGGAAAATGTAGACC 59.869 47.826 0.00 0.00 0.00 3.85
1519 1698 3.131046 CCAGGGCAATGGAAAATGTAGAC 59.869 47.826 1.91 0.00 43.57 2.59
1521 1700 3.364549 TCCAGGGCAATGGAAAATGTAG 58.635 45.455 8.12 0.00 46.45 2.74
1522 1701 3.464720 TCCAGGGCAATGGAAAATGTA 57.535 42.857 8.12 0.00 46.45 2.29
1523 1702 2.323999 TCCAGGGCAATGGAAAATGT 57.676 45.000 8.12 0.00 46.45 2.71
1530 1709 1.696063 CCATAAGTCCAGGGCAATGG 58.304 55.000 10.29 10.29 42.11 3.16
1531 1710 1.035139 GCCATAAGTCCAGGGCAATG 58.965 55.000 0.00 0.00 44.76 2.82
1532 1711 3.520623 GCCATAAGTCCAGGGCAAT 57.479 52.632 0.00 0.00 44.76 3.56
1704 4758 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
1705 4759 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
1706 4760 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
1707 4761 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
1708 4762 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
1709 4763 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
1710 4764 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
1711 4765 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
1712 4766 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
1713 4767 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
1714 4768 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
1715 4769 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
1716 4770 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
1717 4771 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
1718 4772 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
1719 4773 2.269940 ACCTTGTGTGGGAGCTTCTAT 58.730 47.619 0.00 0.00 0.00 1.98
1720 4774 1.729586 ACCTTGTGTGGGAGCTTCTA 58.270 50.000 0.00 0.00 0.00 2.10
1721 4775 1.729586 TACCTTGTGTGGGAGCTTCT 58.270 50.000 0.00 0.00 0.00 2.85
1722 4776 2.789409 ATACCTTGTGTGGGAGCTTC 57.211 50.000 0.00 0.00 0.00 3.86
1723 4777 4.475016 AGAATATACCTTGTGTGGGAGCTT 59.525 41.667 0.00 0.00 0.00 3.74
1724 4778 4.040755 AGAATATACCTTGTGTGGGAGCT 58.959 43.478 0.00 0.00 0.00 4.09
1725 4779 4.130118 CAGAATATACCTTGTGTGGGAGC 58.870 47.826 0.00 0.00 0.00 4.70
1726 4780 4.130118 GCAGAATATACCTTGTGTGGGAG 58.870 47.826 0.00 0.00 0.00 4.30
1727 4781 3.118038 GGCAGAATATACCTTGTGTGGGA 60.118 47.826 0.00 0.00 0.00 4.37
1728 4782 3.214328 GGCAGAATATACCTTGTGTGGG 58.786 50.000 0.00 0.00 0.00 4.61
1729 4783 2.872245 CGGCAGAATATACCTTGTGTGG 59.128 50.000 0.00 0.00 0.00 4.17
1730 4784 3.792401 TCGGCAGAATATACCTTGTGTG 58.208 45.455 0.00 0.00 0.00 3.82
1731 4785 4.481368 TTCGGCAGAATATACCTTGTGT 57.519 40.909 0.00 0.00 0.00 3.72
1732 4786 6.260936 AGAAATTCGGCAGAATATACCTTGTG 59.739 38.462 12.62 0.00 45.66 3.33
1733 4787 6.357367 AGAAATTCGGCAGAATATACCTTGT 58.643 36.000 12.62 0.00 45.66 3.16
1734 4788 6.867662 AGAAATTCGGCAGAATATACCTTG 57.132 37.500 12.62 0.00 45.66 3.61
1735 4789 6.486993 GGAAGAAATTCGGCAGAATATACCTT 59.513 38.462 12.62 12.23 45.66 3.50
1736 4790 5.998363 GGAAGAAATTCGGCAGAATATACCT 59.002 40.000 12.62 5.12 45.66 3.08
1737 4791 5.998363 AGGAAGAAATTCGGCAGAATATACC 59.002 40.000 12.62 11.33 45.66 2.73
1738 4792 7.442666 AGAAGGAAGAAATTCGGCAGAATATAC 59.557 37.037 12.62 7.34 45.66 1.47
1808 4862 6.321690 CCCGTCCTATAAGATAATCTACCTGG 59.678 46.154 0.00 0.00 0.00 4.45
1915 4969 5.845985 TTTAGACATCTTTGAGTTGCTCG 57.154 39.130 0.00 0.00 32.35 5.03
2025 5083 4.521146 AGGTCAAGTAAATGCAGGATCTG 58.479 43.478 0.00 0.00 34.12 2.90
2305 6736 3.059570 CGTTGCTATTTCACTCTCACGAC 59.940 47.826 0.00 0.00 0.00 4.34
2327 6758 4.751098 TGCCGACGGTATGATAATTAAACC 59.249 41.667 16.73 0.00 0.00 3.27
2345 6776 1.891919 GTTGAGGTGCAGTTGCCGA 60.892 57.895 1.06 0.00 41.18 5.54
3752 8762 4.460263 ACCAGCAACAGATTGACACTTAA 58.540 39.130 0.00 0.00 38.15 1.85
3977 8987 7.033185 ACCGGACAATAGCATGATTTTAAAAC 58.967 34.615 9.46 0.00 0.00 2.43
4068 9078 4.884668 AAGAGGAAAATGTACTGGACGA 57.115 40.909 0.00 0.00 0.00 4.20
4382 9393 5.010933 AGATACGTCTTTCTGTTCTCAGGA 58.989 41.667 0.00 0.00 41.59 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.