Multiple sequence alignment - TraesCS7A01G478800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G478800 chr7A 100.000 2239 0 0 931 3169 671499393 671501631 0.000000e+00 4135.0
1 TraesCS7A01G478800 chr7A 100.000 550 0 0 1 550 671498463 671499012 0.000000e+00 1016.0
2 TraesCS7A01G478800 chr7A 88.525 244 27 1 1 244 245468606 245468364 8.600000e-76 294.0
3 TraesCS7A01G478800 chr7A 87.603 242 30 0 1 242 96209964 96209723 6.690000e-72 281.0
4 TraesCS7A01G478800 chr7A 86.694 248 31 2 1 247 257123392 257123146 1.120000e-69 274.0
5 TraesCS7A01G478800 chr7A 91.139 158 14 0 1712 1869 249265963 249266120 6.880000e-52 215.0
6 TraesCS7A01G478800 chr7D 95.088 1303 49 4 1871 3169 580003273 580004564 0.000000e+00 2037.0
7 TraesCS7A01G478800 chr7D 92.412 738 31 11 997 1712 580002545 580003279 0.000000e+00 1029.0
8 TraesCS7A01G478800 chr7D 85.213 399 45 5 1874 2259 580005425 580005822 6.370000e-107 398.0
9 TraesCS7A01G478800 chr7D 97.959 49 0 1 481 529 580002166 580002213 2.030000e-12 84.2
10 TraesCS7A01G478800 chr7B 93.856 1302 61 8 1871 3169 646368945 646370230 0.000000e+00 1943.0
11 TraesCS7A01G478800 chr7B 83.361 595 72 11 1874 2444 646370926 646371517 2.800000e-145 525.0
12 TraesCS7A01G478800 chr7B 92.116 241 7 5 931 1171 646368203 646368431 2.360000e-86 329.0
13 TraesCS7A01G478800 chr7B 88.446 251 28 1 1330 1579 646368521 646368771 5.140000e-78 302.0
14 TraesCS7A01G478800 chr7B 96.471 170 4 2 381 550 646367941 646368108 2.410000e-71 279.0
15 TraesCS7A01G478800 chr7B 91.083 157 14 0 1713 1869 509613843 509613687 2.480000e-51 213.0
16 TraesCS7A01G478800 chr6B 85.897 312 37 5 1960 2271 240324500 240324804 3.050000e-85 326.0
17 TraesCS7A01G478800 chr6D 84.308 325 44 5 1947 2271 140220667 140220984 8.540000e-81 311.0
18 TraesCS7A01G478800 chr6D 87.705 244 30 0 1 244 405820237 405820480 5.170000e-73 285.0
19 TraesCS7A01G478800 chr6D 86.885 244 32 0 2 245 315797229 315797472 1.120000e-69 274.0
20 TraesCS7A01G478800 chr6A 83.974 312 43 5 1960 2271 184820034 184820338 3.090000e-75 292.0
21 TraesCS7A01G478800 chr6A 86.694 248 31 2 1 247 419679900 419679654 1.120000e-69 274.0
22 TraesCS7A01G478800 chr6A 89.286 140 10 4 950 1088 184819098 184819233 1.510000e-38 171.0
23 TraesCS7A01G478800 chr4D 86.885 244 32 0 1 244 383876733 383876490 1.120000e-69 274.0
24 TraesCS7A01G478800 chr4A 86.885 244 32 0 1 244 637817665 637817422 1.120000e-69 274.0
25 TraesCS7A01G478800 chr1A 86.939 245 31 1 1 244 586758354 586758598 1.120000e-69 274.0
26 TraesCS7A01G478800 chr1A 88.824 170 17 2 1707 1875 13489008 13488840 1.150000e-49 207.0
27 TraesCS7A01G478800 chr1A 86.076 158 18 4 1713 1869 533695203 533695357 1.960000e-37 167.0
28 TraesCS7A01G478800 chr5B 90.625 160 15 0 1713 1872 653308990 653308831 2.480000e-51 213.0
29 TraesCS7A01G478800 chr5B 90.506 158 15 0 1713 1870 29625015 29625172 3.200000e-50 209.0
30 TraesCS7A01G478800 chr1B 90.000 160 15 1 1708 1867 527842450 527842608 4.140000e-49 206.0
31 TraesCS7A01G478800 chr2B 89.032 155 17 0 1716 1870 167473369 167473523 3.230000e-45 193.0
32 TraesCS7A01G478800 chr2B 87.898 157 18 1 1713 1869 584721380 584721225 1.940000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G478800 chr7A 671498463 671501631 3168 False 2575.50 4135 100.000 1 3169 2 chr7A.!!$F2 3168
1 TraesCS7A01G478800 chr7D 580002166 580005822 3656 False 887.05 2037 92.668 481 3169 4 chr7D.!!$F1 2688
2 TraesCS7A01G478800 chr7B 646367941 646371517 3576 False 675.60 1943 90.850 381 3169 5 chr7B.!!$F1 2788
3 TraesCS7A01G478800 chr6A 184819098 184820338 1240 False 231.50 292 86.630 950 2271 2 chr6A.!!$F1 1321

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
405 406 0.179062 CTCATCGGCTTTCCTCAGGG 60.179 60.0 0.0 0.0 0.00 4.45 F
1724 1930 0.179000 CCTTATGCAGGGACGAAGCT 59.821 55.0 0.0 0.0 39.39 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1750 1956 0.036765 GACGAACCCACTGCCATGTA 60.037 55.000 0.0 0.00 0.0 2.29 R
2671 2892 1.508088 GGCGCTGGATCCAAACTTG 59.492 57.895 17.0 4.62 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.390613 GTTCGTCAAAACCTATCAACATGG 58.609 41.667 0.00 0.00 0.00 3.66
24 25 4.900684 TCGTCAAAACCTATCAACATGGA 58.099 39.130 0.00 0.00 0.00 3.41
25 26 5.309638 TCGTCAAAACCTATCAACATGGAA 58.690 37.500 0.00 0.00 0.00 3.53
26 27 5.943416 TCGTCAAAACCTATCAACATGGAAT 59.057 36.000 0.00 0.00 0.00 3.01
27 28 6.093495 TCGTCAAAACCTATCAACATGGAATC 59.907 38.462 0.00 0.00 0.00 2.52
28 29 6.094048 CGTCAAAACCTATCAACATGGAATCT 59.906 38.462 0.00 0.00 0.00 2.40
29 30 7.253422 GTCAAAACCTATCAACATGGAATCTG 58.747 38.462 0.00 0.00 0.00 2.90
30 31 6.377996 TCAAAACCTATCAACATGGAATCTGG 59.622 38.462 0.00 0.00 0.00 3.86
31 32 5.456921 AACCTATCAACATGGAATCTGGT 57.543 39.130 0.00 0.00 0.00 4.00
32 33 5.456921 ACCTATCAACATGGAATCTGGTT 57.543 39.130 0.00 0.00 0.00 3.67
33 34 5.831103 ACCTATCAACATGGAATCTGGTTT 58.169 37.500 0.00 0.00 0.00 3.27
34 35 6.256053 ACCTATCAACATGGAATCTGGTTTT 58.744 36.000 0.00 0.00 0.00 2.43
35 36 6.153340 ACCTATCAACATGGAATCTGGTTTTG 59.847 38.462 0.00 0.00 0.00 2.44
36 37 6.377996 CCTATCAACATGGAATCTGGTTTTGA 59.622 38.462 0.00 0.00 0.00 2.69
37 38 6.669125 ATCAACATGGAATCTGGTTTTGAA 57.331 33.333 0.00 0.00 0.00 2.69
38 39 6.088016 TCAACATGGAATCTGGTTTTGAAG 57.912 37.500 0.00 0.00 0.00 3.02
39 40 5.832595 TCAACATGGAATCTGGTTTTGAAGA 59.167 36.000 0.00 0.00 0.00 2.87
40 41 6.494491 TCAACATGGAATCTGGTTTTGAAGAT 59.506 34.615 0.00 0.00 0.00 2.40
41 42 6.521151 ACATGGAATCTGGTTTTGAAGATC 57.479 37.500 0.00 0.00 0.00 2.75
42 43 6.251471 ACATGGAATCTGGTTTTGAAGATCT 58.749 36.000 0.00 0.00 0.00 2.75
43 44 6.376581 ACATGGAATCTGGTTTTGAAGATCTC 59.623 38.462 0.00 0.00 0.00 2.75
44 45 6.131972 TGGAATCTGGTTTTGAAGATCTCT 57.868 37.500 0.00 0.00 0.00 3.10
45 46 7.257790 TGGAATCTGGTTTTGAAGATCTCTA 57.742 36.000 0.00 0.00 0.00 2.43
46 47 7.865820 TGGAATCTGGTTTTGAAGATCTCTAT 58.134 34.615 0.00 0.00 0.00 1.98
47 48 8.992349 TGGAATCTGGTTTTGAAGATCTCTATA 58.008 33.333 0.00 0.00 0.00 1.31
48 49 9.267084 GGAATCTGGTTTTGAAGATCTCTATAC 57.733 37.037 0.00 0.00 0.00 1.47
49 50 8.879342 AATCTGGTTTTGAAGATCTCTATACG 57.121 34.615 0.00 0.00 0.00 3.06
50 51 7.640597 TCTGGTTTTGAAGATCTCTATACGA 57.359 36.000 0.00 0.00 0.00 3.43
51 52 7.708051 TCTGGTTTTGAAGATCTCTATACGAG 58.292 38.462 0.00 0.00 41.30 4.18
52 53 6.806751 TGGTTTTGAAGATCTCTATACGAGG 58.193 40.000 0.00 0.00 40.30 4.63
53 54 6.605995 TGGTTTTGAAGATCTCTATACGAGGA 59.394 38.462 0.00 0.00 40.30 3.71
54 55 7.123697 TGGTTTTGAAGATCTCTATACGAGGAA 59.876 37.037 0.00 0.00 40.30 3.36
55 56 8.145122 GGTTTTGAAGATCTCTATACGAGGAAT 58.855 37.037 0.00 0.00 40.30 3.01
56 57 9.187455 GTTTTGAAGATCTCTATACGAGGAATC 57.813 37.037 0.00 0.00 40.30 2.52
57 58 7.455641 TTGAAGATCTCTATACGAGGAATCC 57.544 40.000 0.00 0.00 40.30 3.01
58 59 6.785076 TGAAGATCTCTATACGAGGAATCCT 58.215 40.000 0.00 0.00 40.30 3.24
59 60 7.919151 TGAAGATCTCTATACGAGGAATCCTA 58.081 38.462 0.00 0.00 40.30 2.94
60 61 8.553153 TGAAGATCTCTATACGAGGAATCCTAT 58.447 37.037 0.00 0.00 40.30 2.57
61 62 8.746052 AAGATCTCTATACGAGGAATCCTATG 57.254 38.462 0.00 0.00 40.30 2.23
62 63 7.287061 AGATCTCTATACGAGGAATCCTATGG 58.713 42.308 0.00 0.00 40.30 2.74
63 64 6.390048 TCTCTATACGAGGAATCCTATGGT 57.610 41.667 0.00 3.52 40.30 3.55
64 65 6.181190 TCTCTATACGAGGAATCCTATGGTG 58.819 44.000 0.00 0.00 40.30 4.17
65 66 6.012771 TCTCTATACGAGGAATCCTATGGTGA 60.013 42.308 0.00 0.00 40.30 4.02
66 67 6.549242 TCTATACGAGGAATCCTATGGTGAA 58.451 40.000 0.00 0.00 31.76 3.18
67 68 7.008332 TCTATACGAGGAATCCTATGGTGAAA 58.992 38.462 0.00 0.00 31.76 2.69
68 69 4.837093 ACGAGGAATCCTATGGTGAAAA 57.163 40.909 0.00 0.00 31.76 2.29
69 70 4.514401 ACGAGGAATCCTATGGTGAAAAC 58.486 43.478 0.00 0.00 31.76 2.43
70 71 3.555956 CGAGGAATCCTATGGTGAAAACG 59.444 47.826 0.00 0.00 31.76 3.60
71 72 3.877508 GAGGAATCCTATGGTGAAAACGG 59.122 47.826 0.00 0.00 31.76 4.44
72 73 3.265995 AGGAATCCTATGGTGAAAACGGT 59.734 43.478 0.00 0.00 28.47 4.83
73 74 4.014406 GGAATCCTATGGTGAAAACGGTT 58.986 43.478 0.00 0.00 0.00 4.44
74 75 4.095932 GGAATCCTATGGTGAAAACGGTTC 59.904 45.833 0.00 0.00 0.00 3.62
75 76 2.690786 TCCTATGGTGAAAACGGTTCG 58.309 47.619 0.00 0.00 0.00 3.95
76 77 2.299582 TCCTATGGTGAAAACGGTTCGA 59.700 45.455 0.00 0.00 0.00 3.71
77 78 2.671396 CCTATGGTGAAAACGGTTCGAG 59.329 50.000 0.00 0.00 0.00 4.04
78 79 2.536761 ATGGTGAAAACGGTTCGAGA 57.463 45.000 0.00 0.00 0.00 4.04
79 80 2.536761 TGGTGAAAACGGTTCGAGAT 57.463 45.000 0.00 0.00 0.00 2.75
80 81 2.841215 TGGTGAAAACGGTTCGAGATT 58.159 42.857 0.00 0.00 0.00 2.40
81 82 3.207778 TGGTGAAAACGGTTCGAGATTT 58.792 40.909 0.00 0.00 0.00 2.17
82 83 3.002862 TGGTGAAAACGGTTCGAGATTTG 59.997 43.478 0.00 0.00 0.00 2.32
83 84 3.551551 GTGAAAACGGTTCGAGATTTGG 58.448 45.455 0.00 0.00 0.00 3.28
84 85 3.249080 GTGAAAACGGTTCGAGATTTGGA 59.751 43.478 0.00 0.00 0.00 3.53
85 86 4.069304 TGAAAACGGTTCGAGATTTGGAT 58.931 39.130 0.00 0.00 0.00 3.41
86 87 4.083537 TGAAAACGGTTCGAGATTTGGATG 60.084 41.667 0.00 0.00 0.00 3.51
87 88 1.369625 ACGGTTCGAGATTTGGATGC 58.630 50.000 0.00 0.00 0.00 3.91
88 89 1.338674 ACGGTTCGAGATTTGGATGCA 60.339 47.619 0.00 0.00 0.00 3.96
89 90 1.062587 CGGTTCGAGATTTGGATGCAC 59.937 52.381 0.00 0.00 0.00 4.57
90 91 1.062587 GGTTCGAGATTTGGATGCACG 59.937 52.381 0.00 0.00 0.00 5.34
91 92 1.062587 GTTCGAGATTTGGATGCACGG 59.937 52.381 0.00 0.00 0.00 4.94
92 93 0.249120 TCGAGATTTGGATGCACGGT 59.751 50.000 0.00 0.00 0.00 4.83
93 94 1.086696 CGAGATTTGGATGCACGGTT 58.913 50.000 0.00 0.00 0.00 4.44
94 95 1.468520 CGAGATTTGGATGCACGGTTT 59.531 47.619 0.00 0.00 0.00 3.27
95 96 2.675844 CGAGATTTGGATGCACGGTTTA 59.324 45.455 0.00 0.00 0.00 2.01
96 97 3.126171 CGAGATTTGGATGCACGGTTTAA 59.874 43.478 0.00 0.00 0.00 1.52
97 98 4.378978 CGAGATTTGGATGCACGGTTTAAA 60.379 41.667 0.00 0.00 0.00 1.52
98 99 5.650543 GAGATTTGGATGCACGGTTTAAAT 58.349 37.500 0.00 0.00 0.00 1.40
99 100 5.410067 AGATTTGGATGCACGGTTTAAATG 58.590 37.500 0.00 0.00 0.00 2.32
100 101 4.855715 TTTGGATGCACGGTTTAAATGA 57.144 36.364 0.00 0.00 0.00 2.57
101 102 5.398603 TTTGGATGCACGGTTTAAATGAT 57.601 34.783 0.00 0.00 0.00 2.45
102 103 5.398603 TTGGATGCACGGTTTAAATGATT 57.601 34.783 0.00 0.00 0.00 2.57
103 104 6.516739 TTGGATGCACGGTTTAAATGATTA 57.483 33.333 0.00 0.00 0.00 1.75
104 105 6.516739 TGGATGCACGGTTTAAATGATTAA 57.483 33.333 0.00 0.00 0.00 1.40
105 106 6.559810 TGGATGCACGGTTTAAATGATTAAG 58.440 36.000 0.00 0.00 32.80 1.85
106 107 5.458779 GGATGCACGGTTTAAATGATTAAGC 59.541 40.000 0.00 0.00 32.80 3.09
107 108 4.407818 TGCACGGTTTAAATGATTAAGCG 58.592 39.130 9.82 9.82 34.21 4.68
108 109 4.083217 TGCACGGTTTAAATGATTAAGCGT 60.083 37.500 10.91 10.91 46.40 5.07
109 110 4.854839 GCACGGTTTAAATGATTAAGCGTT 59.145 37.500 13.27 0.00 43.64 4.84
110 111 5.343860 GCACGGTTTAAATGATTAAGCGTTT 59.656 36.000 14.75 14.75 43.64 3.60
111 112 6.129035 GCACGGTTTAAATGATTAAGCGTTTT 60.129 34.615 15.49 6.48 43.64 2.43
112 113 7.217201 CACGGTTTAAATGATTAAGCGTTTTG 58.783 34.615 15.49 4.09 43.64 2.44
113 114 7.113684 CACGGTTTAAATGATTAAGCGTTTTGA 59.886 33.333 15.49 3.66 43.64 2.69
114 115 7.648510 ACGGTTTAAATGATTAAGCGTTTTGAA 59.351 29.630 15.49 8.90 43.64 2.69
115 116 8.643752 CGGTTTAAATGATTAAGCGTTTTGAAT 58.356 29.630 15.49 0.00 34.21 2.57
129 130 5.486706 CGTTTTGAATAAACGGATCTACGG 58.513 41.667 13.31 0.00 46.39 4.02
130 131 5.289193 CGTTTTGAATAAACGGATCTACGGA 59.711 40.000 13.31 0.00 46.39 4.69
131 132 6.183360 CGTTTTGAATAAACGGATCTACGGAA 60.183 38.462 13.31 0.00 46.39 4.30
132 133 7.520686 GTTTTGAATAAACGGATCTACGGAAA 58.479 34.615 0.00 0.00 38.39 3.13
133 134 7.670009 TTTGAATAAACGGATCTACGGAAAA 57.330 32.000 0.00 0.00 38.39 2.29
134 135 7.670009 TTGAATAAACGGATCTACGGAAAAA 57.330 32.000 0.00 0.00 38.39 1.94
152 153 4.705110 AAAAAGGAAAACCCCCAGATTG 57.295 40.909 0.00 0.00 34.66 2.67
153 154 1.644509 AAGGAAAACCCCCAGATTGC 58.355 50.000 0.00 0.00 34.66 3.56
154 155 0.611896 AGGAAAACCCCCAGATTGCG 60.612 55.000 0.00 0.00 34.66 4.85
155 156 0.610785 GGAAAACCCCCAGATTGCGA 60.611 55.000 0.00 0.00 0.00 5.10
156 157 1.474330 GAAAACCCCCAGATTGCGAT 58.526 50.000 0.00 0.00 0.00 4.58
157 158 2.650322 GAAAACCCCCAGATTGCGATA 58.350 47.619 0.00 0.00 0.00 2.92
158 159 2.818751 AAACCCCCAGATTGCGATAA 57.181 45.000 0.00 0.00 0.00 1.75
159 160 2.348411 AACCCCCAGATTGCGATAAG 57.652 50.000 0.00 0.00 0.00 1.73
160 161 1.213296 ACCCCCAGATTGCGATAAGT 58.787 50.000 0.00 0.00 0.00 2.24
161 162 1.134098 ACCCCCAGATTGCGATAAGTG 60.134 52.381 0.00 0.00 0.00 3.16
162 163 1.597742 CCCCAGATTGCGATAAGTGG 58.402 55.000 0.00 3.35 0.00 4.00
163 164 0.947244 CCCAGATTGCGATAAGTGGC 59.053 55.000 4.50 0.00 0.00 5.01
164 165 1.667236 CCAGATTGCGATAAGTGGCA 58.333 50.000 0.00 0.00 37.29 4.92
165 166 2.224606 CCAGATTGCGATAAGTGGCAT 58.775 47.619 0.00 0.00 38.90 4.40
166 167 3.402110 CCAGATTGCGATAAGTGGCATA 58.598 45.455 0.00 0.00 38.90 3.14
167 168 4.005650 CCAGATTGCGATAAGTGGCATAT 58.994 43.478 0.00 0.00 38.90 1.78
168 169 4.456911 CCAGATTGCGATAAGTGGCATATT 59.543 41.667 0.00 0.00 38.90 1.28
169 170 5.643348 CCAGATTGCGATAAGTGGCATATTA 59.357 40.000 0.00 0.00 38.90 0.98
170 171 6.317140 CCAGATTGCGATAAGTGGCATATTAT 59.683 38.462 7.42 7.42 38.90 1.28
171 172 7.495606 CCAGATTGCGATAAGTGGCATATTATA 59.504 37.037 7.62 0.00 38.90 0.98
172 173 9.049523 CAGATTGCGATAAGTGGCATATTATAT 57.950 33.333 7.62 0.22 38.90 0.86
173 174 9.049523 AGATTGCGATAAGTGGCATATTATATG 57.950 33.333 7.79 7.79 38.90 1.78
174 175 8.737168 ATTGCGATAAGTGGCATATTATATGT 57.263 30.769 13.03 0.00 38.90 2.29
175 176 7.538303 TGCGATAAGTGGCATATTATATGTG 57.462 36.000 13.03 0.00 33.92 3.21
176 177 6.037062 TGCGATAAGTGGCATATTATATGTGC 59.963 38.462 13.03 2.11 45.32 4.57
177 178 6.640137 CGATAAGTGGCATATTATATGTGCG 58.360 40.000 13.03 4.42 46.77 5.34
178 179 4.685169 AAGTGGCATATTATATGTGCGC 57.315 40.909 13.03 0.00 46.77 6.09
179 180 3.009723 AGTGGCATATTATATGTGCGCC 58.990 45.455 4.18 8.75 46.77 6.53
180 181 2.746904 GTGGCATATTATATGTGCGCCA 59.253 45.455 4.18 10.98 46.77 5.69
181 182 2.746904 TGGCATATTATATGTGCGCCAC 59.253 45.455 4.18 3.72 46.77 5.01
182 183 3.009723 GGCATATTATATGTGCGCCACT 58.990 45.455 4.18 0.00 46.77 4.00
183 184 3.440173 GGCATATTATATGTGCGCCACTT 59.560 43.478 4.18 4.32 46.77 3.16
184 185 4.406069 GCATATTATATGTGCGCCACTTG 58.594 43.478 4.18 0.00 37.64 3.16
185 186 4.083324 GCATATTATATGTGCGCCACTTGT 60.083 41.667 4.18 2.89 37.64 3.16
186 187 5.621422 CATATTATATGTGCGCCACTTGTC 58.379 41.667 4.18 0.00 35.11 3.18
187 188 2.682155 TATATGTGCGCCACTTGTCA 57.318 45.000 4.18 0.00 35.11 3.58
188 189 1.086696 ATATGTGCGCCACTTGTCAC 58.913 50.000 4.18 0.00 35.11 3.67
189 190 1.288419 TATGTGCGCCACTTGTCACG 61.288 55.000 4.18 0.00 35.11 4.35
190 191 2.964925 GTGCGCCACTTGTCACGA 60.965 61.111 4.18 0.00 0.00 4.35
191 192 2.964925 TGCGCCACTTGTCACGAC 60.965 61.111 4.18 0.00 0.00 4.34
192 193 2.661866 GCGCCACTTGTCACGACT 60.662 61.111 0.00 0.00 0.00 4.18
193 194 2.244651 GCGCCACTTGTCACGACTT 61.245 57.895 0.00 0.00 0.00 3.01
194 195 1.564622 CGCCACTTGTCACGACTTG 59.435 57.895 0.00 0.00 0.00 3.16
195 196 0.874175 CGCCACTTGTCACGACTTGA 60.874 55.000 0.00 0.00 0.00 3.02
196 197 1.295792 GCCACTTGTCACGACTTGAA 58.704 50.000 0.00 0.00 35.39 2.69
197 198 1.668751 GCCACTTGTCACGACTTGAAA 59.331 47.619 0.00 0.00 35.39 2.69
198 199 2.096819 GCCACTTGTCACGACTTGAAAA 59.903 45.455 0.00 0.00 35.39 2.29
199 200 3.426963 GCCACTTGTCACGACTTGAAAAA 60.427 43.478 0.00 0.00 35.39 1.94
200 201 4.342772 CCACTTGTCACGACTTGAAAAAG 58.657 43.478 0.00 4.83 35.39 2.27
201 202 4.142687 CCACTTGTCACGACTTGAAAAAGT 60.143 41.667 0.00 5.79 41.16 2.66
202 203 5.064198 CCACTTGTCACGACTTGAAAAAGTA 59.936 40.000 9.58 0.00 39.64 2.24
203 204 6.402766 CCACTTGTCACGACTTGAAAAAGTAA 60.403 38.462 9.58 0.00 39.64 2.24
204 205 7.018826 CACTTGTCACGACTTGAAAAAGTAAA 58.981 34.615 9.58 0.00 39.64 2.01
205 206 7.535940 CACTTGTCACGACTTGAAAAAGTAAAA 59.464 33.333 9.58 0.00 39.64 1.52
206 207 8.241367 ACTTGTCACGACTTGAAAAAGTAAAAT 58.759 29.630 8.64 0.00 39.76 1.82
207 208 7.962934 TGTCACGACTTGAAAAAGTAAAATG 57.037 32.000 0.00 0.00 35.39 2.32
208 209 7.531716 TGTCACGACTTGAAAAAGTAAAATGT 58.468 30.769 0.00 0.00 35.39 2.71
209 210 8.024285 TGTCACGACTTGAAAAAGTAAAATGTT 58.976 29.630 0.00 0.00 35.39 2.71
210 211 8.521059 GTCACGACTTGAAAAAGTAAAATGTTC 58.479 33.333 0.00 0.00 35.39 3.18
211 212 8.455682 TCACGACTTGAAAAAGTAAAATGTTCT 58.544 29.630 0.00 0.00 32.22 3.01
212 213 9.072294 CACGACTTGAAAAAGTAAAATGTTCTT 57.928 29.630 0.00 0.00 32.22 2.52
213 214 9.634163 ACGACTTGAAAAAGTAAAATGTTCTTT 57.366 25.926 0.00 0.00 32.22 2.52
214 215 9.885743 CGACTTGAAAAAGTAAAATGTTCTTTG 57.114 29.630 0.00 0.00 32.74 2.77
215 216 9.689075 GACTTGAAAAAGTAAAATGTTCTTTGC 57.311 29.630 0.00 0.00 32.74 3.68
216 217 9.213799 ACTTGAAAAAGTAAAATGTTCTTTGCA 57.786 25.926 0.00 0.00 32.74 4.08
218 219 9.818796 TTGAAAAAGTAAAATGTTCTTTGCAAC 57.181 25.926 0.00 0.00 32.74 4.17
219 220 8.165428 TGAAAAAGTAAAATGTTCTTTGCAACG 58.835 29.630 0.00 0.00 32.74 4.10
220 221 7.820044 AAAAGTAAAATGTTCTTTGCAACGA 57.180 28.000 0.00 0.00 32.74 3.85
221 222 7.449934 AAAGTAAAATGTTCTTTGCAACGAG 57.550 32.000 0.00 0.00 31.47 4.18
222 223 6.131544 AGTAAAATGTTCTTTGCAACGAGT 57.868 33.333 0.00 0.00 0.00 4.18
223 224 7.254227 AGTAAAATGTTCTTTGCAACGAGTA 57.746 32.000 0.00 0.00 0.00 2.59
224 225 7.130269 AGTAAAATGTTCTTTGCAACGAGTAC 58.870 34.615 0.00 0.00 0.00 2.73
225 226 5.751243 AAATGTTCTTTGCAACGAGTACT 57.249 34.783 0.00 0.00 0.00 2.73
226 227 4.992381 ATGTTCTTTGCAACGAGTACTC 57.008 40.909 13.18 13.18 0.00 2.59
227 228 3.787785 TGTTCTTTGCAACGAGTACTCA 58.212 40.909 22.37 0.11 0.00 3.41
228 229 4.377021 TGTTCTTTGCAACGAGTACTCAT 58.623 39.130 22.37 4.34 0.00 2.90
229 230 4.814234 TGTTCTTTGCAACGAGTACTCATT 59.186 37.500 22.37 11.23 0.00 2.57
230 231 5.986741 TGTTCTTTGCAACGAGTACTCATTA 59.013 36.000 22.37 0.00 0.00 1.90
231 232 6.480651 TGTTCTTTGCAACGAGTACTCATTAA 59.519 34.615 22.37 3.36 0.00 1.40
232 233 7.172532 TGTTCTTTGCAACGAGTACTCATTAAT 59.827 33.333 22.37 0.78 0.00 1.40
233 234 7.667043 TCTTTGCAACGAGTACTCATTAATT 57.333 32.000 22.37 5.73 0.00 1.40
234 235 8.766000 TCTTTGCAACGAGTACTCATTAATTA 57.234 30.769 22.37 2.38 0.00 1.40
235 236 8.869897 TCTTTGCAACGAGTACTCATTAATTAG 58.130 33.333 22.37 11.28 0.00 1.73
236 237 8.542497 TTTGCAACGAGTACTCATTAATTAGT 57.458 30.769 22.37 7.42 0.00 2.24
237 238 7.520119 TGCAACGAGTACTCATTAATTAGTG 57.480 36.000 22.37 2.12 0.00 2.74
238 239 7.317390 TGCAACGAGTACTCATTAATTAGTGA 58.683 34.615 22.37 9.97 0.00 3.41
239 240 7.979537 TGCAACGAGTACTCATTAATTAGTGAT 59.020 33.333 22.37 5.10 0.00 3.06
240 241 8.818057 GCAACGAGTACTCATTAATTAGTGATT 58.182 33.333 22.37 8.28 0.00 2.57
243 244 9.234384 ACGAGTACTCATTAATTAGTGATTTCG 57.766 33.333 22.37 19.63 0.00 3.46
244 245 8.691727 CGAGTACTCATTAATTAGTGATTTCGG 58.308 37.037 22.37 2.65 0.00 4.30
245 246 9.745880 GAGTACTCATTAATTAGTGATTTCGGA 57.254 33.333 18.20 0.00 0.00 4.55
296 297 3.314083 TTTTTCATTTTGGGCCGGC 57.686 47.368 21.18 21.18 0.00 6.13
297 298 0.250510 TTTTTCATTTTGGGCCGGCC 60.251 50.000 38.57 38.57 0.00 6.13
298 299 2.441822 TTTTCATTTTGGGCCGGCCG 62.442 55.000 38.22 23.68 36.85 6.13
314 315 3.458163 CGCTTGGACGGCTAGGGA 61.458 66.667 2.57 0.00 0.00 4.20
315 316 2.501610 GCTTGGACGGCTAGGGAG 59.498 66.667 0.00 0.00 0.00 4.30
316 317 3.095347 GCTTGGACGGCTAGGGAGG 62.095 68.421 0.00 0.00 0.00 4.30
317 318 3.081409 TTGGACGGCTAGGGAGGC 61.081 66.667 0.00 0.00 44.80 4.70
338 339 4.208686 CGGCCGCTCCCTAGACAC 62.209 72.222 14.67 0.00 0.00 3.67
339 340 3.075005 GGCCGCTCCCTAGACACA 61.075 66.667 0.00 0.00 0.00 3.72
340 341 2.184579 GCCGCTCCCTAGACACAC 59.815 66.667 0.00 0.00 0.00 3.82
341 342 2.490217 CCGCTCCCTAGACACACG 59.510 66.667 0.00 0.00 0.00 4.49
342 343 2.341101 CCGCTCCCTAGACACACGT 61.341 63.158 0.00 0.00 0.00 4.49
343 344 1.136984 CGCTCCCTAGACACACGTC 59.863 63.158 0.00 0.00 42.95 4.34
344 345 1.511768 GCTCCCTAGACACACGTCC 59.488 63.158 0.00 0.00 43.73 4.79
345 346 1.248785 GCTCCCTAGACACACGTCCA 61.249 60.000 0.00 0.00 43.73 4.02
346 347 1.475403 CTCCCTAGACACACGTCCAT 58.525 55.000 0.00 0.00 43.73 3.41
347 348 2.651455 CTCCCTAGACACACGTCCATA 58.349 52.381 0.00 0.00 43.73 2.74
348 349 3.021695 CTCCCTAGACACACGTCCATAA 58.978 50.000 0.00 0.00 43.73 1.90
349 350 3.433343 TCCCTAGACACACGTCCATAAA 58.567 45.455 0.00 0.00 43.73 1.40
350 351 3.194116 TCCCTAGACACACGTCCATAAAC 59.806 47.826 0.00 0.00 43.73 2.01
351 352 3.056393 CCCTAGACACACGTCCATAAACA 60.056 47.826 0.00 0.00 43.73 2.83
352 353 4.561938 CCCTAGACACACGTCCATAAACAA 60.562 45.833 0.00 0.00 43.73 2.83
353 354 4.992319 CCTAGACACACGTCCATAAACAAA 59.008 41.667 0.00 0.00 43.73 2.83
354 355 4.806342 AGACACACGTCCATAAACAAAC 57.194 40.909 0.00 0.00 43.73 2.93
355 356 4.193090 AGACACACGTCCATAAACAAACA 58.807 39.130 0.00 0.00 43.73 2.83
356 357 4.272504 AGACACACGTCCATAAACAAACAG 59.727 41.667 0.00 0.00 43.73 3.16
357 358 3.314080 ACACACGTCCATAAACAAACAGG 59.686 43.478 0.00 0.00 0.00 4.00
358 359 2.882137 ACACGTCCATAAACAAACAGGG 59.118 45.455 0.00 0.00 0.00 4.45
359 360 1.883926 ACGTCCATAAACAAACAGGGC 59.116 47.619 0.00 0.00 0.00 5.19
360 361 1.883275 CGTCCATAAACAAACAGGGCA 59.117 47.619 0.00 0.00 0.00 5.36
361 362 2.095263 CGTCCATAAACAAACAGGGCAG 60.095 50.000 0.00 0.00 0.00 4.85
362 363 1.892474 TCCATAAACAAACAGGGCAGC 59.108 47.619 0.00 0.00 0.00 5.25
363 364 1.066929 CCATAAACAAACAGGGCAGCC 60.067 52.381 1.26 1.26 0.00 4.85
364 365 1.066929 CATAAACAAACAGGGCAGCCC 60.067 52.381 24.90 24.90 45.90 5.19
405 406 0.179062 CTCATCGGCTTTCCTCAGGG 60.179 60.000 0.00 0.00 0.00 4.45
1014 1015 2.750657 GGTCATGGAGGAGCTGGGG 61.751 68.421 0.00 0.00 32.68 4.96
1142 1150 4.802051 TTCGCCCCATGCTCCTGC 62.802 66.667 0.00 0.00 38.05 4.85
1177 1299 2.158914 GGGAATGGATGGATTTGTTGCC 60.159 50.000 0.00 0.00 0.00 4.52
1193 1315 3.818787 CCGCAAGCATCTGGGTGC 61.819 66.667 0.00 0.00 45.38 5.01
1272 1399 3.881688 GCTGATGGATTGCTGTCACTTAT 59.118 43.478 0.00 0.00 0.00 1.73
1275 1402 5.499313 TGATGGATTGCTGTCACTTATCAA 58.501 37.500 0.00 0.00 0.00 2.57
1309 1436 0.462759 GCTTTGCGAGGTATCCTGCT 60.463 55.000 0.00 0.00 31.76 4.24
1316 1443 3.866582 GGTATCCTGCTGCCCGCT 61.867 66.667 0.00 0.00 40.11 5.52
1402 1529 6.036470 GCTTATTGCCTTCTTATTGTTGGAC 58.964 40.000 0.00 0.00 35.15 4.02
1424 1552 1.071605 CTAGTGCTCTGAACCGCAAC 58.928 55.000 0.00 0.00 37.97 4.17
1519 1654 6.862209 TCAACCATTATTTTACATGCCTGTC 58.138 36.000 0.00 0.00 36.79 3.51
1575 1710 4.825546 AACAAGTGCTTCTGATGTCAAG 57.174 40.909 0.00 0.00 0.00 3.02
1623 1786 2.033141 CCTGTGTGCACCCTCCTG 59.967 66.667 15.69 3.86 0.00 3.86
1626 1789 2.329539 CTGTGTGCACCCTCCTGTGT 62.330 60.000 15.69 0.00 38.52 3.72
1627 1790 1.893808 GTGTGCACCCTCCTGTGTG 60.894 63.158 15.69 0.00 38.52 3.82
1632 1795 1.898574 CACCCTCCTGTGTGCAACC 60.899 63.158 0.00 0.00 34.36 3.77
1634 1797 1.151450 CCCTCCTGTGTGCAACCTT 59.849 57.895 0.00 0.00 34.36 3.50
1636 1799 1.611673 CCCTCCTGTGTGCAACCTTAG 60.612 57.143 0.00 0.00 34.36 2.18
1641 1833 0.472044 TGTGTGCAACCTTAGAGGCA 59.528 50.000 0.00 0.00 39.63 4.75
1686 1892 6.903516 TCTGACCTGATCCAATGATACATTT 58.096 36.000 0.00 0.00 0.00 2.32
1712 1918 4.159506 TCCACCAAAATACTTGCCTTATGC 59.840 41.667 0.00 0.00 41.77 3.14
1721 1927 4.954933 GCCTTATGCAGGGACGAA 57.045 55.556 7.25 0.00 44.16 3.85
1722 1928 2.695314 GCCTTATGCAGGGACGAAG 58.305 57.895 7.25 0.00 44.16 3.79
1723 1929 1.440145 GCCTTATGCAGGGACGAAGC 61.440 60.000 7.25 0.00 44.16 3.86
1724 1930 0.179000 CCTTATGCAGGGACGAAGCT 59.821 55.000 0.00 0.00 39.39 3.74
1725 1931 1.412710 CCTTATGCAGGGACGAAGCTA 59.587 52.381 0.00 0.00 39.39 3.32
1726 1932 2.546795 CCTTATGCAGGGACGAAGCTAG 60.547 54.545 0.00 0.00 39.39 3.42
1727 1933 2.067365 TATGCAGGGACGAAGCTAGA 57.933 50.000 0.00 0.00 0.00 2.43
1728 1934 1.195115 ATGCAGGGACGAAGCTAGAA 58.805 50.000 0.00 0.00 0.00 2.10
1729 1935 0.973632 TGCAGGGACGAAGCTAGAAA 59.026 50.000 0.00 0.00 0.00 2.52
1730 1936 1.346395 TGCAGGGACGAAGCTAGAAAA 59.654 47.619 0.00 0.00 0.00 2.29
1731 1937 2.003301 GCAGGGACGAAGCTAGAAAAG 58.997 52.381 0.00 0.00 0.00 2.27
1732 1938 2.353803 GCAGGGACGAAGCTAGAAAAGA 60.354 50.000 0.00 0.00 0.00 2.52
1733 1939 3.864921 GCAGGGACGAAGCTAGAAAAGAA 60.865 47.826 0.00 0.00 0.00 2.52
1734 1940 3.929610 CAGGGACGAAGCTAGAAAAGAAG 59.070 47.826 0.00 0.00 0.00 2.85
1735 1941 3.579151 AGGGACGAAGCTAGAAAAGAAGT 59.421 43.478 0.00 0.00 0.00 3.01
1736 1942 4.040584 AGGGACGAAGCTAGAAAAGAAGTT 59.959 41.667 0.00 0.00 0.00 2.66
1737 1943 4.755629 GGGACGAAGCTAGAAAAGAAGTTT 59.244 41.667 0.00 0.00 0.00 2.66
1738 1944 5.334182 GGGACGAAGCTAGAAAAGAAGTTTG 60.334 44.000 0.00 0.00 0.00 2.93
1739 1945 5.465724 GGACGAAGCTAGAAAAGAAGTTTGA 59.534 40.000 0.00 0.00 0.00 2.69
1740 1946 6.147985 GGACGAAGCTAGAAAAGAAGTTTGAT 59.852 38.462 0.00 0.00 0.00 2.57
1741 1947 6.892691 ACGAAGCTAGAAAAGAAGTTTGATG 58.107 36.000 0.00 0.00 0.00 3.07
1742 1948 6.073003 ACGAAGCTAGAAAAGAAGTTTGATGG 60.073 38.462 0.00 0.00 0.00 3.51
1743 1949 6.581171 AAGCTAGAAAAGAAGTTTGATGGG 57.419 37.500 0.00 0.00 0.00 4.00
1744 1950 5.012893 AGCTAGAAAAGAAGTTTGATGGGG 58.987 41.667 0.00 0.00 0.00 4.96
1745 1951 4.767409 GCTAGAAAAGAAGTTTGATGGGGT 59.233 41.667 0.00 0.00 0.00 4.95
1746 1952 5.106118 GCTAGAAAAGAAGTTTGATGGGGTC 60.106 44.000 0.00 0.00 0.00 4.46
1747 1953 4.803452 AGAAAAGAAGTTTGATGGGGTCA 58.197 39.130 0.00 0.00 34.25 4.02
1748 1954 5.397360 AGAAAAGAAGTTTGATGGGGTCAT 58.603 37.500 0.00 0.00 36.54 3.06
1749 1955 6.552008 AGAAAAGAAGTTTGATGGGGTCATA 58.448 36.000 0.00 0.00 36.54 2.15
1750 1956 7.184862 AGAAAAGAAGTTTGATGGGGTCATAT 58.815 34.615 0.00 0.00 36.54 1.78
1751 1957 8.336235 AGAAAAGAAGTTTGATGGGGTCATATA 58.664 33.333 0.00 0.00 36.54 0.86
1752 1958 7.881775 AAAGAAGTTTGATGGGGTCATATAC 57.118 36.000 0.00 0.00 36.54 1.47
1753 1959 6.575244 AGAAGTTTGATGGGGTCATATACA 57.425 37.500 0.00 0.00 36.54 2.29
1754 1960 7.154191 AGAAGTTTGATGGGGTCATATACAT 57.846 36.000 0.00 0.00 36.54 2.29
1755 1961 7.000472 AGAAGTTTGATGGGGTCATATACATG 59.000 38.462 0.00 0.00 36.54 3.21
1756 1962 5.634118 AGTTTGATGGGGTCATATACATGG 58.366 41.667 0.00 0.00 36.54 3.66
1757 1963 3.719268 TGATGGGGTCATATACATGGC 57.281 47.619 0.00 0.00 35.94 4.40
1758 1964 2.985311 TGATGGGGTCATATACATGGCA 59.015 45.455 0.00 0.00 38.60 4.92
1759 1965 3.009363 TGATGGGGTCATATACATGGCAG 59.991 47.826 0.00 0.00 38.60 4.85
1760 1966 2.417652 TGGGGTCATATACATGGCAGT 58.582 47.619 0.00 0.00 38.60 4.40
1761 1967 2.106338 TGGGGTCATATACATGGCAGTG 59.894 50.000 0.00 0.00 38.60 3.66
1762 1968 2.553028 GGGGTCATATACATGGCAGTGG 60.553 54.545 0.00 0.00 38.60 4.00
1763 1969 2.553028 GGGTCATATACATGGCAGTGGG 60.553 54.545 0.00 0.00 38.60 4.61
1764 1970 2.106511 GGTCATATACATGGCAGTGGGT 59.893 50.000 0.00 0.00 38.60 4.51
1765 1971 3.435026 GGTCATATACATGGCAGTGGGTT 60.435 47.826 0.00 0.00 38.60 4.11
1766 1972 3.815401 GTCATATACATGGCAGTGGGTTC 59.185 47.826 0.00 0.00 36.73 3.62
1767 1973 2.613026 TATACATGGCAGTGGGTTCG 57.387 50.000 0.00 0.00 0.00 3.95
1768 1974 0.618458 ATACATGGCAGTGGGTTCGT 59.382 50.000 0.00 0.00 0.00 3.85
1769 1975 0.036765 TACATGGCAGTGGGTTCGTC 60.037 55.000 0.00 0.00 0.00 4.20
1770 1976 2.040544 CATGGCAGTGGGTTCGTCC 61.041 63.158 0.00 0.00 0.00 4.79
1771 1977 2.224159 ATGGCAGTGGGTTCGTCCT 61.224 57.895 0.00 0.00 36.25 3.85
1772 1978 1.779061 ATGGCAGTGGGTTCGTCCTT 61.779 55.000 0.00 0.00 36.25 3.36
1773 1979 1.671379 GGCAGTGGGTTCGTCCTTC 60.671 63.158 0.00 0.00 36.25 3.46
1774 1980 1.371558 GCAGTGGGTTCGTCCTTCT 59.628 57.895 0.00 0.00 36.25 2.85
1775 1981 0.606604 GCAGTGGGTTCGTCCTTCTA 59.393 55.000 0.00 0.00 36.25 2.10
1776 1982 1.207329 GCAGTGGGTTCGTCCTTCTAT 59.793 52.381 0.00 0.00 36.25 1.98
1777 1983 2.429610 GCAGTGGGTTCGTCCTTCTATA 59.570 50.000 0.00 0.00 36.25 1.31
1778 1984 3.118884 GCAGTGGGTTCGTCCTTCTATAA 60.119 47.826 0.00 0.00 36.25 0.98
1779 1985 4.622220 GCAGTGGGTTCGTCCTTCTATAAA 60.622 45.833 0.00 0.00 36.25 1.40
1780 1986 5.671493 CAGTGGGTTCGTCCTTCTATAAAT 58.329 41.667 0.30 0.00 36.25 1.40
1781 1987 5.523916 CAGTGGGTTCGTCCTTCTATAAATG 59.476 44.000 0.30 0.00 36.25 2.32
1782 1988 5.189145 AGTGGGTTCGTCCTTCTATAAATGT 59.811 40.000 0.30 0.00 36.25 2.71
1783 1989 5.878669 GTGGGTTCGTCCTTCTATAAATGTT 59.121 40.000 0.30 0.00 36.25 2.71
1784 1990 7.043565 GTGGGTTCGTCCTTCTATAAATGTTA 58.956 38.462 0.30 0.00 36.25 2.41
1785 1991 7.224167 GTGGGTTCGTCCTTCTATAAATGTTAG 59.776 40.741 0.30 0.00 36.25 2.34
1786 1992 7.093201 TGGGTTCGTCCTTCTATAAATGTTAGT 60.093 37.037 0.30 0.00 36.25 2.24
1787 1993 7.224167 GGGTTCGTCCTTCTATAAATGTTAGTG 59.776 40.741 0.30 0.00 36.25 2.74
1788 1994 7.977853 GGTTCGTCCTTCTATAAATGTTAGTGA 59.022 37.037 0.00 0.00 0.00 3.41
1789 1995 9.530633 GTTCGTCCTTCTATAAATGTTAGTGAT 57.469 33.333 0.00 0.00 0.00 3.06
1827 2033 8.611654 AGTGAAGGATTTTCAAATTTCATTGG 57.388 30.769 3.75 0.00 31.56 3.16
1828 2034 7.662669 AGTGAAGGATTTTCAAATTTCATTGGG 59.337 33.333 3.75 0.00 31.56 4.12
1829 2035 6.941436 TGAAGGATTTTCAAATTTCATTGGGG 59.059 34.615 0.00 0.00 0.00 4.96
1830 2036 6.452757 AGGATTTTCAAATTTCATTGGGGT 57.547 33.333 0.00 0.00 0.00 4.95
1831 2037 6.475504 AGGATTTTCAAATTTCATTGGGGTC 58.524 36.000 0.00 0.00 0.00 4.46
1832 2038 6.044171 AGGATTTTCAAATTTCATTGGGGTCA 59.956 34.615 0.00 0.00 0.00 4.02
1833 2039 6.714356 GGATTTTCAAATTTCATTGGGGTCAA 59.286 34.615 0.00 0.00 37.28 3.18
1834 2040 6.934048 TTTTCAAATTTCATTGGGGTCAAC 57.066 33.333 0.00 0.00 35.48 3.18
1835 2041 5.885449 TTCAAATTTCATTGGGGTCAACT 57.115 34.783 0.00 0.00 35.48 3.16
1836 2042 5.212532 TCAAATTTCATTGGGGTCAACTG 57.787 39.130 0.00 0.00 35.48 3.16
1837 2043 4.898265 TCAAATTTCATTGGGGTCAACTGA 59.102 37.500 0.00 0.00 35.48 3.41
1838 2044 4.871933 AATTTCATTGGGGTCAACTGAC 57.128 40.909 0.98 0.98 44.04 3.51
1847 2053 2.267045 GTCAACTGACCCCAATGCC 58.733 57.895 0.00 0.00 39.07 4.40
1848 2054 0.251341 GTCAACTGACCCCAATGCCT 60.251 55.000 0.00 0.00 39.07 4.75
1849 2055 0.038166 TCAACTGACCCCAATGCCTC 59.962 55.000 0.00 0.00 0.00 4.70
1850 2056 0.038744 CAACTGACCCCAATGCCTCT 59.961 55.000 0.00 0.00 0.00 3.69
1851 2057 1.281867 CAACTGACCCCAATGCCTCTA 59.718 52.381 0.00 0.00 0.00 2.43
1852 2058 1.668826 ACTGACCCCAATGCCTCTAA 58.331 50.000 0.00 0.00 0.00 2.10
1853 2059 1.561542 ACTGACCCCAATGCCTCTAAG 59.438 52.381 0.00 0.00 0.00 2.18
1854 2060 0.918983 TGACCCCAATGCCTCTAAGG 59.081 55.000 0.00 0.00 38.80 2.69
1855 2061 0.919710 GACCCCAATGCCTCTAAGGT 59.080 55.000 0.00 0.00 37.80 3.50
1856 2062 2.124411 GACCCCAATGCCTCTAAGGTA 58.876 52.381 0.00 0.00 37.80 3.08
1857 2063 2.104963 GACCCCAATGCCTCTAAGGTAG 59.895 54.545 0.00 0.00 37.80 3.18
1858 2064 1.202818 CCCCAATGCCTCTAAGGTAGC 60.203 57.143 0.00 0.00 37.80 3.58
1859 2065 1.202818 CCCAATGCCTCTAAGGTAGCC 60.203 57.143 0.00 0.00 37.80 3.93
1860 2066 1.202818 CCAATGCCTCTAAGGTAGCCC 60.203 57.143 0.00 0.00 37.80 5.19
1861 2067 1.771255 CAATGCCTCTAAGGTAGCCCT 59.229 52.381 0.00 0.00 45.63 5.19
1862 2068 1.428869 ATGCCTCTAAGGTAGCCCTG 58.571 55.000 0.00 0.00 41.56 4.45
1863 2069 0.042731 TGCCTCTAAGGTAGCCCTGT 59.957 55.000 0.00 0.00 41.56 4.00
1864 2070 0.753867 GCCTCTAAGGTAGCCCTGTC 59.246 60.000 0.00 0.00 41.56 3.51
1865 2071 1.415200 CCTCTAAGGTAGCCCTGTCC 58.585 60.000 0.00 0.00 41.56 4.02
1866 2072 1.415200 CTCTAAGGTAGCCCTGTCCC 58.585 60.000 0.00 0.00 41.56 4.46
1867 2073 1.016415 TCTAAGGTAGCCCTGTCCCT 58.984 55.000 0.00 0.00 41.56 4.20
1868 2074 1.123928 CTAAGGTAGCCCTGTCCCTG 58.876 60.000 0.00 0.00 41.56 4.45
1869 2075 0.714180 TAAGGTAGCCCTGTCCCTGA 59.286 55.000 0.00 0.00 41.56 3.86
1870 2076 0.910088 AAGGTAGCCCTGTCCCTGAC 60.910 60.000 0.00 0.00 41.56 3.51
1871 2077 2.368011 GGTAGCCCTGTCCCTGACC 61.368 68.421 0.00 0.00 0.00 4.02
1872 2078 1.306226 GTAGCCCTGTCCCTGACCT 60.306 63.158 0.00 0.00 0.00 3.85
1883 2089 2.304761 GTCCCTGACCTTATGTGAACCA 59.695 50.000 0.00 0.00 0.00 3.67
1951 2171 6.544038 TTGACATGTTATATTCGCCATGAG 57.456 37.500 0.00 0.00 38.40 2.90
1953 2173 5.466393 TGACATGTTATATTCGCCATGAGTG 59.534 40.000 0.00 0.00 38.40 3.51
2258 2478 5.104527 CCCAACTCCAGTATCTTATGTTCCA 60.105 44.000 0.00 0.00 0.00 3.53
2298 2518 1.360192 GCGTCCCATGGCTTAATGC 59.640 57.895 6.09 4.72 41.94 3.56
2381 2601 1.135228 TGCTGCTGCATATGCTGTTTG 60.135 47.619 28.51 20.69 45.31 2.93
2386 2606 2.925563 GCTGCATATGCTGTTTGTTTCC 59.074 45.455 28.51 11.23 42.66 3.13
2485 2706 4.559502 ACACCCTTGCAGTGTCAC 57.440 55.556 4.49 0.00 45.13 3.67
2565 2786 3.140707 TGCCATCCAGATCATTACCCAAT 59.859 43.478 0.00 0.00 0.00 3.16
2588 2809 2.181975 CCAATGGAGCCATGAGGTTTT 58.818 47.619 2.18 0.00 36.68 2.43
2589 2810 2.093869 CCAATGGAGCCATGAGGTTTTG 60.094 50.000 2.18 0.00 36.68 2.44
2671 2892 4.745125 TCGTGTGACTCTTCATGTTCTTTC 59.255 41.667 0.00 0.00 33.11 2.62
2680 2901 6.603201 ACTCTTCATGTTCTTTCAAGTTTGGA 59.397 34.615 0.00 0.00 0.00 3.53
2707 2928 1.302383 CCCGCACGTTTTGGCTATCA 61.302 55.000 0.00 0.00 0.00 2.15
2776 2999 5.738619 TGTGACATGACTTAGGAGCTTAA 57.261 39.130 0.00 0.00 0.00 1.85
2801 3024 5.499004 AGCAATTACCAGACTAGGAAACA 57.501 39.130 0.00 0.00 0.00 2.83
2879 3102 3.659786 TCAACATACTCTGGAAACCGTG 58.340 45.455 0.00 0.00 0.00 4.94
2945 3168 4.528076 ACTCTAGCTCTAGGATTGGTCA 57.472 45.455 0.00 0.00 34.06 4.02
2946 3169 5.073437 ACTCTAGCTCTAGGATTGGTCAT 57.927 43.478 0.00 0.00 34.06 3.06
2970 3193 4.299155 GTCACTTGAGTCATGTCGAAAGA 58.701 43.478 8.63 1.14 38.16 2.52
2984 3207 1.594331 GAAAGACCTGAAGCGTGGTT 58.406 50.000 0.00 0.00 36.59 3.67
3106 3329 3.972133 TGATTTTCATGTGATCAGGCCT 58.028 40.909 0.00 0.00 0.00 5.19
3116 3339 2.173569 GTGATCAGGCCTTAAGGGATGT 59.826 50.000 23.06 0.00 37.23 3.06
3130 3353 8.802267 CCTTAAGGGATGTATTTTTGAAGTTCA 58.198 33.333 14.25 0.08 37.23 3.18
3141 3364 5.730296 TTTTGAAGTTCAAACCTTGGACA 57.270 34.783 26.72 10.13 45.03 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.180492 TCCATGTTGATAGGTTTTGACGAAC 59.820 40.000 0.00 0.00 0.00 3.95
1 2 5.309638 TCCATGTTGATAGGTTTTGACGAA 58.690 37.500 0.00 0.00 0.00 3.85
2 3 4.900684 TCCATGTTGATAGGTTTTGACGA 58.099 39.130 0.00 0.00 0.00 4.20
5 6 6.377996 CCAGATTCCATGTTGATAGGTTTTGA 59.622 38.462 0.00 0.00 0.00 2.69
8 9 5.831103 ACCAGATTCCATGTTGATAGGTTT 58.169 37.500 0.00 0.00 0.00 3.27
9 10 5.456921 ACCAGATTCCATGTTGATAGGTT 57.543 39.130 0.00 0.00 0.00 3.50
10 11 5.456921 AACCAGATTCCATGTTGATAGGT 57.543 39.130 0.00 0.00 0.00 3.08
11 12 6.377996 TCAAAACCAGATTCCATGTTGATAGG 59.622 38.462 0.00 0.00 0.00 2.57
12 13 7.395190 TCAAAACCAGATTCCATGTTGATAG 57.605 36.000 0.00 0.00 0.00 2.08
13 14 7.669304 TCTTCAAAACCAGATTCCATGTTGATA 59.331 33.333 0.00 0.00 0.00 2.15
14 15 6.494491 TCTTCAAAACCAGATTCCATGTTGAT 59.506 34.615 0.00 0.00 0.00 2.57
15 16 5.832595 TCTTCAAAACCAGATTCCATGTTGA 59.167 36.000 0.00 0.00 0.00 3.18
16 17 6.088016 TCTTCAAAACCAGATTCCATGTTG 57.912 37.500 0.00 0.00 0.00 3.33
17 18 6.723052 AGATCTTCAAAACCAGATTCCATGTT 59.277 34.615 0.00 0.00 29.41 2.71
18 19 6.251471 AGATCTTCAAAACCAGATTCCATGT 58.749 36.000 0.00 0.00 29.41 3.21
19 20 6.602406 AGAGATCTTCAAAACCAGATTCCATG 59.398 38.462 0.00 0.00 29.41 3.66
20 21 6.729428 AGAGATCTTCAAAACCAGATTCCAT 58.271 36.000 0.00 0.00 29.41 3.41
21 22 6.131972 AGAGATCTTCAAAACCAGATTCCA 57.868 37.500 0.00 0.00 29.41 3.53
22 23 9.267084 GTATAGAGATCTTCAAAACCAGATTCC 57.733 37.037 0.00 0.00 29.41 3.01
23 24 8.973378 CGTATAGAGATCTTCAAAACCAGATTC 58.027 37.037 0.00 0.00 29.41 2.52
24 25 8.696374 TCGTATAGAGATCTTCAAAACCAGATT 58.304 33.333 0.00 0.00 29.41 2.40
25 26 8.239038 TCGTATAGAGATCTTCAAAACCAGAT 57.761 34.615 0.00 0.00 32.11 2.90
26 27 7.640597 TCGTATAGAGATCTTCAAAACCAGA 57.359 36.000 0.00 0.00 0.00 3.86
41 42 6.181190 TCACCATAGGATTCCTCGTATAGAG 58.819 44.000 8.94 0.00 46.44 2.43
42 43 6.135819 TCACCATAGGATTCCTCGTATAGA 57.864 41.667 8.94 0.00 34.61 1.98
43 44 6.835819 TTCACCATAGGATTCCTCGTATAG 57.164 41.667 8.94 0.00 34.61 1.31
44 45 7.439381 GTTTTCACCATAGGATTCCTCGTATA 58.561 38.462 8.94 0.00 34.61 1.47
45 46 6.289064 GTTTTCACCATAGGATTCCTCGTAT 58.711 40.000 8.94 0.00 34.61 3.06
46 47 5.667466 GTTTTCACCATAGGATTCCTCGTA 58.333 41.667 8.94 0.00 34.61 3.43
47 48 4.514401 GTTTTCACCATAGGATTCCTCGT 58.486 43.478 8.94 1.30 34.61 4.18
48 49 3.555956 CGTTTTCACCATAGGATTCCTCG 59.444 47.826 8.94 1.64 34.61 4.63
49 50 3.877508 CCGTTTTCACCATAGGATTCCTC 59.122 47.826 8.94 0.00 34.61 3.71
50 51 3.265995 ACCGTTTTCACCATAGGATTCCT 59.734 43.478 10.72 10.72 37.71 3.36
51 52 3.617284 ACCGTTTTCACCATAGGATTCC 58.383 45.455 0.00 0.00 0.00 3.01
52 53 4.201783 CGAACCGTTTTCACCATAGGATTC 60.202 45.833 0.00 0.00 0.00 2.52
53 54 3.687698 CGAACCGTTTTCACCATAGGATT 59.312 43.478 0.00 0.00 0.00 3.01
54 55 3.055675 TCGAACCGTTTTCACCATAGGAT 60.056 43.478 0.00 0.00 0.00 3.24
55 56 2.299582 TCGAACCGTTTTCACCATAGGA 59.700 45.455 0.00 0.00 0.00 2.94
56 57 2.671396 CTCGAACCGTTTTCACCATAGG 59.329 50.000 0.00 0.00 0.00 2.57
57 58 3.581755 TCTCGAACCGTTTTCACCATAG 58.418 45.455 0.00 0.00 0.00 2.23
58 59 3.663995 TCTCGAACCGTTTTCACCATA 57.336 42.857 0.00 0.00 0.00 2.74
59 60 2.536761 TCTCGAACCGTTTTCACCAT 57.463 45.000 0.00 0.00 0.00 3.55
60 61 2.536761 ATCTCGAACCGTTTTCACCA 57.463 45.000 0.00 0.00 0.00 4.17
61 62 3.551551 CAAATCTCGAACCGTTTTCACC 58.448 45.455 0.00 0.00 0.00 4.02
62 63 3.249080 TCCAAATCTCGAACCGTTTTCAC 59.751 43.478 0.00 0.00 0.00 3.18
63 64 3.468770 TCCAAATCTCGAACCGTTTTCA 58.531 40.909 0.00 0.00 0.00 2.69
64 65 4.403453 CATCCAAATCTCGAACCGTTTTC 58.597 43.478 0.00 0.00 0.00 2.29
65 66 3.365969 GCATCCAAATCTCGAACCGTTTT 60.366 43.478 0.00 0.00 0.00 2.43
66 67 2.161609 GCATCCAAATCTCGAACCGTTT 59.838 45.455 0.00 0.00 0.00 3.60
67 68 1.737793 GCATCCAAATCTCGAACCGTT 59.262 47.619 0.00 0.00 0.00 4.44
68 69 1.338674 TGCATCCAAATCTCGAACCGT 60.339 47.619 0.00 0.00 0.00 4.83
69 70 1.062587 GTGCATCCAAATCTCGAACCG 59.937 52.381 0.00 0.00 0.00 4.44
70 71 1.062587 CGTGCATCCAAATCTCGAACC 59.937 52.381 0.00 0.00 0.00 3.62
71 72 1.062587 CCGTGCATCCAAATCTCGAAC 59.937 52.381 0.00 0.00 0.00 3.95
72 73 1.338674 ACCGTGCATCCAAATCTCGAA 60.339 47.619 0.00 0.00 0.00 3.71
73 74 0.249120 ACCGTGCATCCAAATCTCGA 59.751 50.000 0.00 0.00 0.00 4.04
74 75 1.086696 AACCGTGCATCCAAATCTCG 58.913 50.000 0.00 0.00 0.00 4.04
75 76 4.695217 TTAAACCGTGCATCCAAATCTC 57.305 40.909 0.00 0.00 0.00 2.75
76 77 5.184864 TCATTTAAACCGTGCATCCAAATCT 59.815 36.000 0.00 0.00 0.00 2.40
77 78 5.406649 TCATTTAAACCGTGCATCCAAATC 58.593 37.500 0.00 0.00 0.00 2.17
78 79 5.398603 TCATTTAAACCGTGCATCCAAAT 57.601 34.783 0.00 0.00 0.00 2.32
79 80 4.855715 TCATTTAAACCGTGCATCCAAA 57.144 36.364 0.00 0.00 0.00 3.28
80 81 5.398603 AATCATTTAAACCGTGCATCCAA 57.601 34.783 0.00 0.00 0.00 3.53
81 82 6.516739 TTAATCATTTAAACCGTGCATCCA 57.483 33.333 0.00 0.00 0.00 3.41
82 83 5.458779 GCTTAATCATTTAAACCGTGCATCC 59.541 40.000 0.00 0.00 0.00 3.51
83 84 5.171337 CGCTTAATCATTTAAACCGTGCATC 59.829 40.000 0.00 0.00 0.00 3.91
84 85 5.034152 CGCTTAATCATTTAAACCGTGCAT 58.966 37.500 0.00 0.00 0.00 3.96
85 86 4.083217 ACGCTTAATCATTTAAACCGTGCA 60.083 37.500 0.00 0.00 35.65 4.57
86 87 4.408694 ACGCTTAATCATTTAAACCGTGC 58.591 39.130 0.00 0.00 35.65 5.34
87 88 6.921332 AAACGCTTAATCATTTAAACCGTG 57.079 33.333 0.00 0.00 36.39 4.94
88 89 7.140048 TCAAAACGCTTAATCATTTAAACCGT 58.860 30.769 0.00 0.00 37.13 4.83
89 90 7.555639 TCAAAACGCTTAATCATTTAAACCG 57.444 32.000 0.00 0.00 32.63 4.44
107 108 6.651755 TCCGTAGATCCGTTTATTCAAAAC 57.348 37.500 0.00 0.00 0.00 2.43
108 109 7.670009 TTTCCGTAGATCCGTTTATTCAAAA 57.330 32.000 0.00 0.00 0.00 2.44
109 110 7.670009 TTTTCCGTAGATCCGTTTATTCAAA 57.330 32.000 0.00 0.00 0.00 2.69
110 111 7.670009 TTTTTCCGTAGATCCGTTTATTCAA 57.330 32.000 0.00 0.00 0.00 2.69
131 132 3.181445 GCAATCTGGGGGTTTTCCTTTTT 60.181 43.478 0.00 0.00 40.46 1.94
132 133 2.371841 GCAATCTGGGGGTTTTCCTTTT 59.628 45.455 0.00 0.00 40.46 2.27
133 134 1.977854 GCAATCTGGGGGTTTTCCTTT 59.022 47.619 0.00 0.00 40.46 3.11
134 135 1.644509 GCAATCTGGGGGTTTTCCTT 58.355 50.000 0.00 0.00 40.46 3.36
135 136 0.611896 CGCAATCTGGGGGTTTTCCT 60.612 55.000 0.00 0.00 40.46 3.36
136 137 0.610785 TCGCAATCTGGGGGTTTTCC 60.611 55.000 0.00 0.00 39.75 3.13
137 138 1.474330 ATCGCAATCTGGGGGTTTTC 58.526 50.000 0.00 0.00 0.00 2.29
138 139 2.818751 TATCGCAATCTGGGGGTTTT 57.181 45.000 0.00 0.00 0.00 2.43
139 140 2.025321 ACTTATCGCAATCTGGGGGTTT 60.025 45.455 0.00 0.00 0.00 3.27
140 141 1.564348 ACTTATCGCAATCTGGGGGTT 59.436 47.619 0.00 0.00 0.00 4.11
141 142 1.134098 CACTTATCGCAATCTGGGGGT 60.134 52.381 0.00 0.00 0.00 4.95
142 143 1.597742 CACTTATCGCAATCTGGGGG 58.402 55.000 0.00 0.00 0.00 5.40
143 144 1.597742 CCACTTATCGCAATCTGGGG 58.402 55.000 0.00 0.00 0.00 4.96
144 145 0.947244 GCCACTTATCGCAATCTGGG 59.053 55.000 0.00 0.00 0.00 4.45
145 146 1.667236 TGCCACTTATCGCAATCTGG 58.333 50.000 0.00 0.00 30.46 3.86
146 147 5.618056 AATATGCCACTTATCGCAATCTG 57.382 39.130 0.00 0.00 38.75 2.90
147 148 9.049523 CATATAATATGCCACTTATCGCAATCT 57.950 33.333 0.00 0.00 38.75 2.40
148 149 8.830580 ACATATAATATGCCACTTATCGCAATC 58.169 33.333 0.00 0.00 38.75 2.67
149 150 8.615211 CACATATAATATGCCACTTATCGCAAT 58.385 33.333 0.00 0.00 38.75 3.56
150 151 7.413988 GCACATATAATATGCCACTTATCGCAA 60.414 37.037 0.00 0.00 38.75 4.85
151 152 6.037062 GCACATATAATATGCCACTTATCGCA 59.963 38.462 0.00 0.00 39.79 5.10
152 153 6.422223 GCACATATAATATGCCACTTATCGC 58.578 40.000 0.00 0.00 33.06 4.58
153 154 6.640137 CGCACATATAATATGCCACTTATCG 58.360 40.000 0.00 0.00 35.91 2.92
154 155 6.422223 GCGCACATATAATATGCCACTTATC 58.578 40.000 0.30 0.00 35.91 1.75
155 156 5.296780 GGCGCACATATAATATGCCACTTAT 59.703 40.000 10.83 0.00 40.66 1.73
156 157 4.634004 GGCGCACATATAATATGCCACTTA 59.366 41.667 10.83 0.00 40.66 2.24
157 158 3.440173 GGCGCACATATAATATGCCACTT 59.560 43.478 10.83 0.00 40.66 3.16
158 159 3.009723 GGCGCACATATAATATGCCACT 58.990 45.455 10.83 0.00 40.66 4.00
159 160 2.746904 TGGCGCACATATAATATGCCAC 59.253 45.455 10.83 0.00 45.35 5.01
161 162 3.009723 AGTGGCGCACATATAATATGCC 58.990 45.455 10.83 0.00 41.33 4.40
162 163 4.083324 ACAAGTGGCGCACATATAATATGC 60.083 41.667 10.83 0.00 36.74 3.14
163 164 5.179182 TGACAAGTGGCGCACATATAATATG 59.821 40.000 10.83 0.00 36.74 1.78
164 165 5.179368 GTGACAAGTGGCGCACATATAATAT 59.821 40.000 10.83 0.00 36.74 1.28
165 166 4.509970 GTGACAAGTGGCGCACATATAATA 59.490 41.667 10.83 0.00 36.74 0.98
166 167 3.312421 GTGACAAGTGGCGCACATATAAT 59.688 43.478 10.83 0.00 36.74 1.28
167 168 2.675844 GTGACAAGTGGCGCACATATAA 59.324 45.455 10.83 0.00 36.74 0.98
168 169 2.276201 GTGACAAGTGGCGCACATATA 58.724 47.619 10.83 0.00 36.74 0.86
169 170 1.086696 GTGACAAGTGGCGCACATAT 58.913 50.000 10.83 0.00 36.74 1.78
170 171 1.288419 CGTGACAAGTGGCGCACATA 61.288 55.000 10.83 0.00 36.74 2.29
171 172 2.606961 CGTGACAAGTGGCGCACAT 61.607 57.895 10.83 0.00 36.74 3.21
172 173 3.268603 CGTGACAAGTGGCGCACA 61.269 61.111 10.83 1.22 36.74 4.57
173 174 2.964925 TCGTGACAAGTGGCGCAC 60.965 61.111 10.83 5.73 31.75 5.34
174 175 2.916502 AAGTCGTGACAAGTGGCGCA 62.917 55.000 10.83 0.00 31.75 6.09
175 176 2.244651 AAGTCGTGACAAGTGGCGC 61.245 57.895 0.00 0.00 0.00 6.53
176 177 0.874175 TCAAGTCGTGACAAGTGGCG 60.874 55.000 2.44 0.00 0.00 5.69
177 178 1.295792 TTCAAGTCGTGACAAGTGGC 58.704 50.000 2.44 0.00 35.39 5.01
178 179 4.142687 ACTTTTTCAAGTCGTGACAAGTGG 60.143 41.667 10.14 0.22 39.15 4.00
179 180 4.969816 ACTTTTTCAAGTCGTGACAAGTG 58.030 39.130 10.14 0.00 39.15 3.16
180 181 6.730960 TTACTTTTTCAAGTCGTGACAAGT 57.269 33.333 13.63 13.63 42.66 3.16
181 182 8.523464 CATTTTACTTTTTCAAGTCGTGACAAG 58.477 33.333 2.44 5.72 42.66 3.16
182 183 8.024285 ACATTTTACTTTTTCAAGTCGTGACAA 58.976 29.630 2.44 0.00 42.66 3.18
183 184 7.531716 ACATTTTACTTTTTCAAGTCGTGACA 58.468 30.769 2.44 0.00 42.66 3.58
184 185 7.964545 ACATTTTACTTTTTCAAGTCGTGAC 57.035 32.000 0.00 0.00 42.66 3.67
185 186 8.455682 AGAACATTTTACTTTTTCAAGTCGTGA 58.544 29.630 0.00 0.00 42.66 4.35
186 187 8.614994 AGAACATTTTACTTTTTCAAGTCGTG 57.385 30.769 0.00 0.00 42.66 4.35
187 188 9.634163 AAAGAACATTTTACTTTTTCAAGTCGT 57.366 25.926 0.00 0.00 42.66 4.34
188 189 9.885743 CAAAGAACATTTTACTTTTTCAAGTCG 57.114 29.630 0.00 0.00 42.66 4.18
189 190 9.689075 GCAAAGAACATTTTACTTTTTCAAGTC 57.311 29.630 0.00 0.00 42.66 3.01
190 191 9.213799 TGCAAAGAACATTTTACTTTTTCAAGT 57.786 25.926 0.00 0.00 45.73 3.16
192 193 9.818796 GTTGCAAAGAACATTTTACTTTTTCAA 57.181 25.926 0.00 0.00 32.59 2.69
193 194 8.165428 CGTTGCAAAGAACATTTTACTTTTTCA 58.835 29.630 6.52 0.00 32.59 2.69
194 195 8.376942 TCGTTGCAAAGAACATTTTACTTTTTC 58.623 29.630 12.88 0.00 32.59 2.29
195 196 8.245701 TCGTTGCAAAGAACATTTTACTTTTT 57.754 26.923 12.88 0.00 32.59 1.94
196 197 7.544217 ACTCGTTGCAAAGAACATTTTACTTTT 59.456 29.630 15.91 0.00 32.59 2.27
197 198 7.033185 ACTCGTTGCAAAGAACATTTTACTTT 58.967 30.769 15.91 0.00 34.77 2.66
198 199 6.560711 ACTCGTTGCAAAGAACATTTTACTT 58.439 32.000 15.91 0.00 0.00 2.24
199 200 6.131544 ACTCGTTGCAAAGAACATTTTACT 57.868 33.333 15.91 0.00 0.00 2.24
200 201 7.130269 AGTACTCGTTGCAAAGAACATTTTAC 58.870 34.615 15.91 9.92 0.00 2.01
201 202 7.011576 TGAGTACTCGTTGCAAAGAACATTTTA 59.988 33.333 17.85 0.00 0.00 1.52
202 203 6.131544 AGTACTCGTTGCAAAGAACATTTT 57.868 33.333 15.91 0.00 0.00 1.82
203 204 5.295787 TGAGTACTCGTTGCAAAGAACATTT 59.704 36.000 17.85 1.83 0.00 2.32
204 205 4.814234 TGAGTACTCGTTGCAAAGAACATT 59.186 37.500 17.85 3.94 0.00 2.71
205 206 4.377021 TGAGTACTCGTTGCAAAGAACAT 58.623 39.130 17.85 7.45 0.00 2.71
206 207 3.787785 TGAGTACTCGTTGCAAAGAACA 58.212 40.909 17.85 8.57 0.00 3.18
207 208 4.992381 ATGAGTACTCGTTGCAAAGAAC 57.008 40.909 17.85 11.95 0.00 3.01
208 209 7.667043 ATTAATGAGTACTCGTTGCAAAGAA 57.333 32.000 31.72 20.54 39.04 2.52
209 210 7.667043 AATTAATGAGTACTCGTTGCAAAGA 57.333 32.000 31.72 14.45 39.04 2.52
210 211 8.656849 ACTAATTAATGAGTACTCGTTGCAAAG 58.343 33.333 31.72 24.86 39.04 2.77
211 212 8.440059 CACTAATTAATGAGTACTCGTTGCAAA 58.560 33.333 31.72 21.71 39.04 3.68
212 213 7.815549 TCACTAATTAATGAGTACTCGTTGCAA 59.184 33.333 31.72 22.29 39.04 4.08
213 214 7.317390 TCACTAATTAATGAGTACTCGTTGCA 58.683 34.615 31.72 21.54 39.04 4.08
214 215 7.751047 TCACTAATTAATGAGTACTCGTTGC 57.249 36.000 31.72 6.12 39.04 4.17
217 218 9.234384 CGAAATCACTAATTAATGAGTACTCGT 57.766 33.333 17.85 15.05 0.00 4.18
218 219 8.691727 CCGAAATCACTAATTAATGAGTACTCG 58.308 37.037 17.85 10.02 0.00 4.18
219 220 9.745880 TCCGAAATCACTAATTAATGAGTACTC 57.254 33.333 16.32 16.32 0.00 2.59
278 279 0.250510 GGCCGGCCCAAAATGAAAAA 60.251 50.000 36.64 0.00 0.00 1.94
279 280 1.373059 GGCCGGCCCAAAATGAAAA 59.627 52.632 36.64 0.00 0.00 2.29
280 281 2.936912 CGGCCGGCCCAAAATGAAA 61.937 57.895 39.24 0.00 0.00 2.69
281 282 3.377759 CGGCCGGCCCAAAATGAA 61.378 61.111 39.24 0.00 0.00 2.57
297 298 3.432051 CTCCCTAGCCGTCCAAGCG 62.432 68.421 0.00 0.00 34.64 4.68
298 299 2.501610 CTCCCTAGCCGTCCAAGC 59.498 66.667 0.00 0.00 0.00 4.01
299 300 3.095347 GCCTCCCTAGCCGTCCAAG 62.095 68.421 0.00 0.00 0.00 3.61
300 301 3.081409 GCCTCCCTAGCCGTCCAA 61.081 66.667 0.00 0.00 0.00 3.53
301 302 4.392166 TGCCTCCCTAGCCGTCCA 62.392 66.667 0.00 0.00 0.00 4.02
302 303 3.541713 CTGCCTCCCTAGCCGTCC 61.542 72.222 0.00 0.00 0.00 4.79
303 304 4.228567 GCTGCCTCCCTAGCCGTC 62.229 72.222 0.00 0.00 33.89 4.79
321 322 4.208686 GTGTCTAGGGAGCGGCCG 62.209 72.222 24.05 24.05 37.63 6.13
322 323 3.075005 TGTGTCTAGGGAGCGGCC 61.075 66.667 0.00 0.00 0.00 6.13
323 324 2.184579 GTGTGTCTAGGGAGCGGC 59.815 66.667 0.00 0.00 0.00 6.53
324 325 2.267681 GACGTGTGTCTAGGGAGCGG 62.268 65.000 0.00 0.00 42.08 5.52
325 326 1.136984 GACGTGTGTCTAGGGAGCG 59.863 63.158 0.00 0.00 42.08 5.03
326 327 1.248785 TGGACGTGTGTCTAGGGAGC 61.249 60.000 0.00 0.00 44.83 4.70
327 328 1.475403 ATGGACGTGTGTCTAGGGAG 58.525 55.000 0.00 0.00 44.83 4.30
328 329 2.812836 TATGGACGTGTGTCTAGGGA 57.187 50.000 0.00 0.00 44.83 4.20
329 330 3.056393 TGTTTATGGACGTGTGTCTAGGG 60.056 47.826 0.00 0.00 44.83 3.53
330 331 4.182693 TGTTTATGGACGTGTGTCTAGG 57.817 45.455 0.00 0.00 44.83 3.02
331 332 5.464057 TGTTTGTTTATGGACGTGTGTCTAG 59.536 40.000 0.00 0.00 44.83 2.43
332 333 5.358090 TGTTTGTTTATGGACGTGTGTCTA 58.642 37.500 0.00 0.00 44.83 2.59
333 334 4.193090 TGTTTGTTTATGGACGTGTGTCT 58.807 39.130 0.00 0.00 44.83 3.41
334 335 4.523813 CTGTTTGTTTATGGACGTGTGTC 58.476 43.478 0.00 0.00 44.72 3.67
335 336 3.314080 CCTGTTTGTTTATGGACGTGTGT 59.686 43.478 0.00 0.00 0.00 3.72
336 337 3.304391 CCCTGTTTGTTTATGGACGTGTG 60.304 47.826 0.00 0.00 0.00 3.82
337 338 2.882137 CCCTGTTTGTTTATGGACGTGT 59.118 45.455 0.00 0.00 0.00 4.49
338 339 2.351350 GCCCTGTTTGTTTATGGACGTG 60.351 50.000 0.00 0.00 0.00 4.49
339 340 1.883926 GCCCTGTTTGTTTATGGACGT 59.116 47.619 0.00 0.00 0.00 4.34
340 341 1.883275 TGCCCTGTTTGTTTATGGACG 59.117 47.619 0.00 0.00 0.00 4.79
341 342 2.352715 GCTGCCCTGTTTGTTTATGGAC 60.353 50.000 0.00 0.00 0.00 4.02
342 343 1.892474 GCTGCCCTGTTTGTTTATGGA 59.108 47.619 0.00 0.00 0.00 3.41
343 344 1.066929 GGCTGCCCTGTTTGTTTATGG 60.067 52.381 7.66 0.00 0.00 2.74
344 345 1.066929 GGGCTGCCCTGTTTGTTTATG 60.067 52.381 30.42 0.00 41.34 1.90
345 346 1.266178 GGGCTGCCCTGTTTGTTTAT 58.734 50.000 30.42 0.00 41.34 1.40
346 347 0.105964 TGGGCTGCCCTGTTTGTTTA 60.106 50.000 35.80 11.90 45.70 2.01
347 348 0.980231 TTGGGCTGCCCTGTTTGTTT 60.980 50.000 35.80 0.00 45.70 2.83
348 349 1.382420 TTGGGCTGCCCTGTTTGTT 60.382 52.632 35.80 0.00 45.70 2.83
349 350 2.133641 GTTGGGCTGCCCTGTTTGT 61.134 57.895 35.80 0.00 45.70 2.83
350 351 2.132996 TGTTGGGCTGCCCTGTTTG 61.133 57.895 35.80 0.00 45.70 2.93
351 352 2.133641 GTGTTGGGCTGCCCTGTTT 61.134 57.895 35.80 0.00 45.70 2.83
352 353 2.521708 GTGTTGGGCTGCCCTGTT 60.522 61.111 35.80 0.00 45.70 3.16
353 354 4.954970 CGTGTTGGGCTGCCCTGT 62.955 66.667 35.80 0.00 45.70 4.00
371 372 4.154347 GAGTGAGAGGGCTGGCGG 62.154 72.222 0.00 0.00 0.00 6.13
372 373 2.641439 GATGAGTGAGAGGGCTGGCG 62.641 65.000 0.00 0.00 0.00 5.69
373 374 1.145819 GATGAGTGAGAGGGCTGGC 59.854 63.158 0.00 0.00 0.00 4.85
374 375 1.440893 CGATGAGTGAGAGGGCTGG 59.559 63.158 0.00 0.00 0.00 4.85
375 376 1.440893 CCGATGAGTGAGAGGGCTG 59.559 63.158 0.00 0.00 0.00 4.85
376 377 2.430610 GCCGATGAGTGAGAGGGCT 61.431 63.158 0.00 0.00 37.57 5.19
377 378 1.965754 AAGCCGATGAGTGAGAGGGC 61.966 60.000 0.00 0.00 40.80 5.19
378 379 0.539051 AAAGCCGATGAGTGAGAGGG 59.461 55.000 0.00 0.00 0.00 4.30
379 380 1.472376 GGAAAGCCGATGAGTGAGAGG 60.472 57.143 0.00 0.00 0.00 3.69
487 488 3.933722 CCGCAGGCGAGGATGGAT 61.934 66.667 16.21 0.00 46.14 3.41
937 938 1.202031 GCACAGGAAGGAATAAACGCG 60.202 52.381 3.53 3.53 0.00 6.01
944 945 1.377725 CCGCTGCACAGGAAGGAAT 60.378 57.895 0.00 0.00 0.00 3.01
948 949 0.176680 ACTATCCGCTGCACAGGAAG 59.823 55.000 9.22 10.02 40.32 3.46
990 991 1.983224 CTCCTCCATGACCAACCGT 59.017 57.895 0.00 0.00 0.00 4.83
992 993 0.393537 CAGCTCCTCCATGACCAACC 60.394 60.000 0.00 0.00 0.00 3.77
993 994 0.393537 CCAGCTCCTCCATGACCAAC 60.394 60.000 0.00 0.00 0.00 3.77
994 995 1.565390 CCCAGCTCCTCCATGACCAA 61.565 60.000 0.00 0.00 0.00 3.67
995 996 1.997311 CCCAGCTCCTCCATGACCA 60.997 63.158 0.00 0.00 0.00 4.02
1142 1150 1.901833 CATTCCCCCTGGTTTTCAAGG 59.098 52.381 0.00 0.00 0.00 3.61
1193 1315 7.810282 GGTCACACATGTTCTGCTAGTATATAG 59.190 40.741 0.00 0.00 0.00 1.31
1197 1319 4.222810 TGGTCACACATGTTCTGCTAGTAT 59.777 41.667 0.00 0.00 0.00 2.12
1198 1320 3.576550 TGGTCACACATGTTCTGCTAGTA 59.423 43.478 0.00 0.00 0.00 1.82
1309 1436 2.301583 TGCATAGTATTATCAGCGGGCA 59.698 45.455 0.00 0.00 0.00 5.36
1402 1529 1.080995 GCGGTTCAGAGCACTAGCAG 61.081 60.000 0.00 0.00 45.49 4.24
1509 1644 1.066215 TCGTGCAATAGACAGGCATGT 60.066 47.619 2.33 2.33 43.29 3.21
1575 1710 9.121517 CAACATTCAATTCAGAAACATCACTAC 57.878 33.333 0.00 0.00 0.00 2.73
1623 1786 1.826385 ATGCCTCTAAGGTTGCACAC 58.174 50.000 0.00 0.00 37.80 3.82
1626 1789 3.620488 CCTTAATGCCTCTAAGGTTGCA 58.380 45.455 7.21 0.00 40.35 4.08
1627 1790 2.952310 CCCTTAATGCCTCTAAGGTTGC 59.048 50.000 12.23 0.00 42.68 4.17
1628 1791 4.080299 AGACCCTTAATGCCTCTAAGGTTG 60.080 45.833 12.23 3.86 42.68 3.77
1629 1792 4.112331 AGACCCTTAATGCCTCTAAGGTT 58.888 43.478 12.23 1.51 42.68 3.50
1630 1793 3.712218 GAGACCCTTAATGCCTCTAAGGT 59.288 47.826 12.23 0.00 42.68 3.50
1632 1795 5.163258 ACATGAGACCCTTAATGCCTCTAAG 60.163 44.000 0.00 0.00 0.00 2.18
1634 1797 4.298626 ACATGAGACCCTTAATGCCTCTA 58.701 43.478 0.00 0.00 0.00 2.43
1636 1799 3.118261 TGACATGAGACCCTTAATGCCTC 60.118 47.826 0.00 0.00 0.00 4.70
1641 1833 7.405292 TCAGAATTTGACATGAGACCCTTAAT 58.595 34.615 0.00 0.00 0.00 1.40
1667 1873 6.774170 TGGAAGAAATGTATCATTGGATCAGG 59.226 38.462 0.00 0.00 34.89 3.86
1672 1878 5.825532 TGGTGGAAGAAATGTATCATTGGA 58.174 37.500 0.00 0.00 0.00 3.53
1686 1892 4.112634 AGGCAAGTATTTTGGTGGAAGA 57.887 40.909 0.00 0.00 0.00 2.87
1712 1918 3.594603 TCTTTTCTAGCTTCGTCCCTG 57.405 47.619 0.00 0.00 0.00 4.45
1713 1919 3.579151 ACTTCTTTTCTAGCTTCGTCCCT 59.421 43.478 0.00 0.00 0.00 4.20
1714 1920 3.927854 ACTTCTTTTCTAGCTTCGTCCC 58.072 45.455 0.00 0.00 0.00 4.46
1715 1921 5.465724 TCAAACTTCTTTTCTAGCTTCGTCC 59.534 40.000 0.00 0.00 0.00 4.79
1716 1922 6.526566 TCAAACTTCTTTTCTAGCTTCGTC 57.473 37.500 0.00 0.00 0.00 4.20
1717 1923 6.073003 CCATCAAACTTCTTTTCTAGCTTCGT 60.073 38.462 0.00 0.00 0.00 3.85
1718 1924 6.310197 CCATCAAACTTCTTTTCTAGCTTCG 58.690 40.000 0.00 0.00 0.00 3.79
1719 1925 6.349694 CCCCATCAAACTTCTTTTCTAGCTTC 60.350 42.308 0.00 0.00 0.00 3.86
1720 1926 5.478332 CCCCATCAAACTTCTTTTCTAGCTT 59.522 40.000 0.00 0.00 0.00 3.74
1721 1927 5.012893 CCCCATCAAACTTCTTTTCTAGCT 58.987 41.667 0.00 0.00 0.00 3.32
1722 1928 4.767409 ACCCCATCAAACTTCTTTTCTAGC 59.233 41.667 0.00 0.00 0.00 3.42
1723 1929 6.003950 TGACCCCATCAAACTTCTTTTCTAG 58.996 40.000 0.00 0.00 33.02 2.43
1724 1930 5.947663 TGACCCCATCAAACTTCTTTTCTA 58.052 37.500 0.00 0.00 33.02 2.10
1725 1931 4.803452 TGACCCCATCAAACTTCTTTTCT 58.197 39.130 0.00 0.00 33.02 2.52
1726 1932 5.728637 ATGACCCCATCAAACTTCTTTTC 57.271 39.130 0.00 0.00 41.93 2.29
1727 1933 7.893302 TGTATATGACCCCATCAAACTTCTTTT 59.107 33.333 0.00 0.00 41.93 2.27
1728 1934 7.410174 TGTATATGACCCCATCAAACTTCTTT 58.590 34.615 0.00 0.00 41.93 2.52
1729 1935 6.969043 TGTATATGACCCCATCAAACTTCTT 58.031 36.000 0.00 0.00 41.93 2.52
1730 1936 6.575244 TGTATATGACCCCATCAAACTTCT 57.425 37.500 0.00 0.00 41.93 2.85
1731 1937 6.207417 CCATGTATATGACCCCATCAAACTTC 59.793 42.308 0.25 0.00 41.93 3.01
1732 1938 6.070656 CCATGTATATGACCCCATCAAACTT 58.929 40.000 0.25 0.00 41.93 2.66
1733 1939 5.634118 CCATGTATATGACCCCATCAAACT 58.366 41.667 0.25 0.00 41.93 2.66
1734 1940 4.218417 GCCATGTATATGACCCCATCAAAC 59.782 45.833 0.25 0.00 41.93 2.93
1735 1941 4.141065 TGCCATGTATATGACCCCATCAAA 60.141 41.667 0.25 0.00 41.93 2.69
1736 1942 3.397282 TGCCATGTATATGACCCCATCAA 59.603 43.478 0.25 0.00 41.93 2.57
1737 1943 2.985311 TGCCATGTATATGACCCCATCA 59.015 45.455 0.25 0.00 43.13 3.07
1738 1944 3.009473 ACTGCCATGTATATGACCCCATC 59.991 47.826 0.25 0.00 36.36 3.51
1739 1945 2.988859 ACTGCCATGTATATGACCCCAT 59.011 45.455 0.25 0.00 36.36 4.00
1740 1946 2.106338 CACTGCCATGTATATGACCCCA 59.894 50.000 0.25 0.00 36.36 4.96
1741 1947 2.553028 CCACTGCCATGTATATGACCCC 60.553 54.545 0.25 0.00 36.36 4.95
1742 1948 2.553028 CCCACTGCCATGTATATGACCC 60.553 54.545 0.25 0.00 36.36 4.46
1743 1949 2.106511 ACCCACTGCCATGTATATGACC 59.893 50.000 0.25 0.00 36.36 4.02
1744 1950 3.492102 ACCCACTGCCATGTATATGAC 57.508 47.619 0.25 0.00 36.36 3.06
1745 1951 3.494223 CGAACCCACTGCCATGTATATGA 60.494 47.826 0.25 0.00 36.36 2.15
1746 1952 2.807967 CGAACCCACTGCCATGTATATG 59.192 50.000 0.00 0.00 0.00 1.78
1747 1953 2.438021 ACGAACCCACTGCCATGTATAT 59.562 45.455 0.00 0.00 0.00 0.86
1748 1954 1.834896 ACGAACCCACTGCCATGTATA 59.165 47.619 0.00 0.00 0.00 1.47
1749 1955 0.618458 ACGAACCCACTGCCATGTAT 59.382 50.000 0.00 0.00 0.00 2.29
1750 1956 0.036765 GACGAACCCACTGCCATGTA 60.037 55.000 0.00 0.00 0.00 2.29
1751 1957 1.302511 GACGAACCCACTGCCATGT 60.303 57.895 0.00 0.00 0.00 3.21
1752 1958 2.040544 GGACGAACCCACTGCCATG 61.041 63.158 0.00 0.00 0.00 3.66
1753 1959 1.779061 AAGGACGAACCCACTGCCAT 61.779 55.000 0.00 0.00 40.05 4.40
1754 1960 2.391724 GAAGGACGAACCCACTGCCA 62.392 60.000 0.00 0.00 40.05 4.92
1755 1961 1.671379 GAAGGACGAACCCACTGCC 60.671 63.158 0.00 0.00 40.05 4.85
1756 1962 0.606604 TAGAAGGACGAACCCACTGC 59.393 55.000 0.00 0.00 40.05 4.40
1757 1963 4.730949 TTATAGAAGGACGAACCCACTG 57.269 45.455 0.00 0.00 40.05 3.66
1758 1964 5.189145 ACATTTATAGAAGGACGAACCCACT 59.811 40.000 0.00 0.00 40.05 4.00
1759 1965 5.425630 ACATTTATAGAAGGACGAACCCAC 58.574 41.667 0.00 0.00 40.05 4.61
1760 1966 5.687166 ACATTTATAGAAGGACGAACCCA 57.313 39.130 0.00 0.00 40.05 4.51
1761 1967 7.224167 CACTAACATTTATAGAAGGACGAACCC 59.776 40.741 0.00 0.00 40.05 4.11
1762 1968 7.977853 TCACTAACATTTATAGAAGGACGAACC 59.022 37.037 0.00 0.00 39.35 3.62
1763 1969 8.922058 TCACTAACATTTATAGAAGGACGAAC 57.078 34.615 0.00 0.00 0.00 3.95
1801 2007 9.709495 CCAATGAAATTTGAAAATCCTTCACTA 57.291 29.630 0.00 0.00 31.22 2.74
1802 2008 7.662669 CCCAATGAAATTTGAAAATCCTTCACT 59.337 33.333 0.00 0.00 31.22 3.41
1803 2009 7.094677 CCCCAATGAAATTTGAAAATCCTTCAC 60.095 37.037 0.00 0.00 31.22 3.18
1804 2010 6.941436 CCCCAATGAAATTTGAAAATCCTTCA 59.059 34.615 0.00 5.71 31.22 3.02
1805 2011 6.942005 ACCCCAATGAAATTTGAAAATCCTTC 59.058 34.615 0.00 0.00 31.22 3.46
1806 2012 6.851318 ACCCCAATGAAATTTGAAAATCCTT 58.149 32.000 0.00 0.00 31.22 3.36
1807 2013 6.044171 TGACCCCAATGAAATTTGAAAATCCT 59.956 34.615 0.00 0.00 31.22 3.24
1808 2014 6.237154 TGACCCCAATGAAATTTGAAAATCC 58.763 36.000 0.00 0.00 31.22 3.01
1809 2015 7.445096 AGTTGACCCCAATGAAATTTGAAAATC 59.555 33.333 0.00 0.00 31.22 2.17
1810 2016 7.229106 CAGTTGACCCCAATGAAATTTGAAAAT 59.771 33.333 0.00 0.00 31.22 1.82
1811 2017 6.541641 CAGTTGACCCCAATGAAATTTGAAAA 59.458 34.615 0.00 0.00 31.22 2.29
1812 2018 6.054295 CAGTTGACCCCAATGAAATTTGAAA 58.946 36.000 0.00 0.00 31.22 2.69
1813 2019 5.365025 TCAGTTGACCCCAATGAAATTTGAA 59.635 36.000 0.00 0.00 31.22 2.69
1814 2020 4.898265 TCAGTTGACCCCAATGAAATTTGA 59.102 37.500 0.00 0.00 31.22 2.69
1815 2021 4.990426 GTCAGTTGACCCCAATGAAATTTG 59.010 41.667 0.00 0.00 39.07 2.32
1816 2022 5.213891 GTCAGTTGACCCCAATGAAATTT 57.786 39.130 0.72 0.00 39.07 1.82
1817 2023 4.871933 GTCAGTTGACCCCAATGAAATT 57.128 40.909 0.72 0.00 39.07 1.82
1829 2035 0.251341 AGGCATTGGGGTCAGTTGAC 60.251 55.000 3.67 3.67 44.04 3.18
1830 2036 0.038166 GAGGCATTGGGGTCAGTTGA 59.962 55.000 0.00 0.00 0.00 3.18
1831 2037 0.038744 AGAGGCATTGGGGTCAGTTG 59.961 55.000 0.00 0.00 0.00 3.16
1832 2038 1.668826 TAGAGGCATTGGGGTCAGTT 58.331 50.000 0.00 0.00 0.00 3.16
1833 2039 1.561542 CTTAGAGGCATTGGGGTCAGT 59.438 52.381 0.00 0.00 0.00 3.41
1834 2040 1.133976 CCTTAGAGGCATTGGGGTCAG 60.134 57.143 0.00 0.00 0.00 3.51
1835 2041 0.918983 CCTTAGAGGCATTGGGGTCA 59.081 55.000 0.00 0.00 0.00 4.02
1836 2042 0.919710 ACCTTAGAGGCATTGGGGTC 59.080 55.000 0.00 0.00 39.63 4.46
1837 2043 2.127708 CTACCTTAGAGGCATTGGGGT 58.872 52.381 0.00 0.00 39.63 4.95
1838 2044 1.202818 GCTACCTTAGAGGCATTGGGG 60.203 57.143 0.00 0.00 39.63 4.96
1839 2045 1.202818 GGCTACCTTAGAGGCATTGGG 60.203 57.143 0.00 0.00 39.63 4.12
1840 2046 1.202818 GGGCTACCTTAGAGGCATTGG 60.203 57.143 0.00 0.00 39.63 3.16
1841 2047 2.262423 GGGCTACCTTAGAGGCATTG 57.738 55.000 0.00 0.00 39.63 2.82
1853 2059 2.368011 GGTCAGGGACAGGGCTACC 61.368 68.421 0.00 0.00 33.68 3.18
1854 2060 0.910088 AAGGTCAGGGACAGGGCTAC 60.910 60.000 0.00 0.00 33.68 3.58
1855 2061 0.714180 TAAGGTCAGGGACAGGGCTA 59.286 55.000 0.00 0.00 33.68 3.93
1856 2062 0.044855 ATAAGGTCAGGGACAGGGCT 59.955 55.000 0.00 0.00 33.68 5.19
1857 2063 0.181350 CATAAGGTCAGGGACAGGGC 59.819 60.000 0.00 0.00 33.68 5.19
1858 2064 1.210478 CACATAAGGTCAGGGACAGGG 59.790 57.143 0.00 0.00 33.68 4.45
1859 2065 2.187958 TCACATAAGGTCAGGGACAGG 58.812 52.381 0.00 0.00 33.68 4.00
1860 2066 3.600388 GTTCACATAAGGTCAGGGACAG 58.400 50.000 0.00 0.00 33.68 3.51
1861 2067 2.304761 GGTTCACATAAGGTCAGGGACA 59.695 50.000 0.00 0.00 33.68 4.02
1862 2068 2.304761 TGGTTCACATAAGGTCAGGGAC 59.695 50.000 0.00 0.00 0.00 4.46
1863 2069 2.626785 TGGTTCACATAAGGTCAGGGA 58.373 47.619 0.00 0.00 0.00 4.20
1864 2070 3.433306 TTGGTTCACATAAGGTCAGGG 57.567 47.619 0.00 0.00 0.00 4.45
1865 2071 7.201821 GGATTAATTGGTTCACATAAGGTCAGG 60.202 40.741 0.00 0.00 0.00 3.86
1866 2072 7.339212 TGGATTAATTGGTTCACATAAGGTCAG 59.661 37.037 0.00 0.00 0.00 3.51
1867 2073 7.178573 TGGATTAATTGGTTCACATAAGGTCA 58.821 34.615 0.00 0.00 0.00 4.02
1868 2074 7.639113 TGGATTAATTGGTTCACATAAGGTC 57.361 36.000 0.00 0.00 0.00 3.85
1869 2075 7.069826 CCATGGATTAATTGGTTCACATAAGGT 59.930 37.037 5.56 0.00 0.00 3.50
1870 2076 7.436118 CCATGGATTAATTGGTTCACATAAGG 58.564 38.462 5.56 0.00 0.00 2.69
1871 2077 6.925165 GCCATGGATTAATTGGTTCACATAAG 59.075 38.462 18.40 0.00 32.90 1.73
1872 2078 6.382282 TGCCATGGATTAATTGGTTCACATAA 59.618 34.615 18.40 0.00 32.90 1.90
1883 2089 8.660295 AGTCATATGAATGCCATGGATTAATT 57.340 30.769 18.40 8.97 36.71 1.40
1934 2154 4.452114 GCATCACTCATGGCGAATATAACA 59.548 41.667 0.00 0.00 32.37 2.41
2258 2478 5.006068 CGCATGCGATATGTATAGCAAGAAT 59.994 40.000 35.82 0.00 45.07 2.40
2362 2582 1.135199 ACAAACAGCATATGCAGCAGC 60.135 47.619 28.62 0.00 45.16 5.25
2381 2601 8.298140 AGCTGTAAGACGTGATATATAGGAAAC 58.702 37.037 0.00 0.00 34.07 2.78
2485 2706 5.581126 TGCCTTGAAAGTTATAGCCAATG 57.419 39.130 0.00 0.00 0.00 2.82
2518 2739 8.692710 CAGACTTACACTATGGTGGTTTATCTA 58.307 37.037 14.25 0.00 46.85 1.98
2528 2749 3.134804 GGATGGCAGACTTACACTATGGT 59.865 47.826 0.00 0.00 0.00 3.55
2671 2892 1.508088 GGCGCTGGATCCAAACTTG 59.492 57.895 17.00 4.62 0.00 3.16
2707 2928 6.645790 AGAACATGAAGACAAAAGCTTGAT 57.354 33.333 0.00 0.00 36.33 2.57
2776 2999 5.499004 TTCCTAGTCTGGTAATTGCTTGT 57.501 39.130 0.00 0.00 0.00 3.16
2879 3102 5.809562 AGATCAATCACTGAAGTCGAACATC 59.190 40.000 0.00 0.00 37.67 3.06
2945 3168 2.562738 TCGACATGACTCAAGTGACCAT 59.437 45.455 0.00 0.00 0.00 3.55
2946 3169 1.960689 TCGACATGACTCAAGTGACCA 59.039 47.619 0.00 0.00 0.00 4.02
2970 3193 2.186826 GTGCAACCACGCTTCAGGT 61.187 57.895 0.00 0.00 40.61 4.00
2984 3207 3.261580 CATACGGAGATGTTCTTGTGCA 58.738 45.455 0.00 0.00 0.00 4.57
3077 3300 8.680001 CCTGATCACATGAAAATCAAATACAGA 58.320 33.333 0.00 0.00 0.00 3.41
3098 3321 5.669798 AAATACATCCCTTAAGGCCTGAT 57.330 39.130 21.79 14.57 34.51 2.90
3116 3339 7.841956 TGTCCAAGGTTTGAACTTCAAAAATA 58.158 30.769 16.79 0.00 46.53 1.40
3130 3353 6.706295 TCAAATTTCTGTTTGTCCAAGGTTT 58.294 32.000 0.00 0.00 39.50 3.27
3141 3364 6.295067 CCGAACCCCTAATCAAATTTCTGTTT 60.295 38.462 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.