Multiple sequence alignment - TraesCS7A01G478300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G478300 chr7A 100.000 3878 0 0 1 3878 671426094 671422217 0.000000e+00 7162
1 TraesCS7A01G478300 chr7A 82.121 2282 380 22 881 3145 736057614 736055344 0.000000e+00 1929
2 TraesCS7A01G478300 chr7A 81.236 2265 371 40 898 3146 735784561 735782335 0.000000e+00 1779
3 TraesCS7A01G478300 chr7D 95.048 2807 129 7 621 3423 579761866 579759066 0.000000e+00 4405
4 TraesCS7A01G478300 chr7D 83.759 2469 372 24 677 3134 621260938 621263388 0.000000e+00 2311
5 TraesCS7A01G478300 chr7D 81.094 2449 406 39 665 3094 632080953 632083363 0.000000e+00 1905
6 TraesCS7A01G478300 chr7D 91.245 514 38 6 1 509 579762457 579761946 0.000000e+00 693
7 TraesCS7A01G478300 chr7D 83.520 358 38 12 3541 3878 579758794 579758438 8.090000e-82 315
8 TraesCS7A01G478300 chr1B 82.521 2317 376 23 844 3144 577925984 577923681 0.000000e+00 2008
9 TraesCS7A01G478300 chr3B 81.810 2320 390 28 846 3144 788256797 788254489 0.000000e+00 1917
10 TraesCS7A01G478300 chr7B 80.262 2518 433 48 655 3144 747526248 747523767 0.000000e+00 1838
11 TraesCS7A01G478300 chr7B 91.860 1204 63 13 2232 3423 645395991 645394811 0.000000e+00 1648
12 TraesCS7A01G478300 chr7B 89.944 716 33 15 1 686 645401988 645401282 0.000000e+00 887
13 TraesCS7A01G478300 chr7B 94.012 167 10 0 685 851 645401172 645401006 1.790000e-63 254
14 TraesCS7A01G478300 chr7B 81.931 321 32 16 3580 3878 645394410 645394094 8.320000e-62 248
15 TraesCS7A01G478300 chr7B 81.481 189 24 10 186 367 743997822 743997638 1.120000e-30 145
16 TraesCS7A01G478300 chr2B 80.051 2351 426 34 819 3147 782183623 782181294 0.000000e+00 1703


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G478300 chr7A 671422217 671426094 3877 True 7162.000000 7162 100.000000 1 3878 1 chr7A.!!$R1 3877
1 TraesCS7A01G478300 chr7A 736055344 736057614 2270 True 1929.000000 1929 82.121000 881 3145 1 chr7A.!!$R3 2264
2 TraesCS7A01G478300 chr7A 735782335 735784561 2226 True 1779.000000 1779 81.236000 898 3146 1 chr7A.!!$R2 2248
3 TraesCS7A01G478300 chr7D 621260938 621263388 2450 False 2311.000000 2311 83.759000 677 3134 1 chr7D.!!$F1 2457
4 TraesCS7A01G478300 chr7D 632080953 632083363 2410 False 1905.000000 1905 81.094000 665 3094 1 chr7D.!!$F2 2429
5 TraesCS7A01G478300 chr7D 579758438 579762457 4019 True 1804.333333 4405 89.937667 1 3878 3 chr7D.!!$R1 3877
6 TraesCS7A01G478300 chr1B 577923681 577925984 2303 True 2008.000000 2008 82.521000 844 3144 1 chr1B.!!$R1 2300
7 TraesCS7A01G478300 chr3B 788254489 788256797 2308 True 1917.000000 1917 81.810000 846 3144 1 chr3B.!!$R1 2298
8 TraesCS7A01G478300 chr7B 747523767 747526248 2481 True 1838.000000 1838 80.262000 655 3144 1 chr7B.!!$R2 2489
9 TraesCS7A01G478300 chr7B 645394094 645395991 1897 True 948.000000 1648 86.895500 2232 3878 2 chr7B.!!$R3 1646
10 TraesCS7A01G478300 chr7B 645401006 645401988 982 True 570.500000 887 91.978000 1 851 2 chr7B.!!$R4 850
11 TraesCS7A01G478300 chr2B 782181294 782183623 2329 True 1703.000000 1703 80.051000 819 3147 1 chr2B.!!$R1 2328

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
556 609 3.220773 CGCATGTATGTACCTACGTACG 58.779 50.0 15.01 15.01 46.71 3.67 F
1921 2117 0.382873 CATGGATGGTGAATGGTGCG 59.617 55.0 0.00 0.00 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 2179 1.146930 ACATGGGGCAGCAGATACG 59.853 57.895 0.00 0.0 0.00 3.06 R
3163 3389 0.393402 CCTCTGCAGCCATTGTAGCA 60.393 55.000 9.47 0.0 39.16 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
290 308 4.329392 ACAATTCAGTTAACCCCTAACGG 58.671 43.478 0.88 0.00 44.08 4.44
400 429 4.105577 TGTTGGGGCTACTACCTATTGAA 58.894 43.478 0.00 0.00 0.00 2.69
438 467 5.182380 TGGGAGAAAATAATTTCACGTGACC 59.818 40.000 19.90 11.69 46.03 4.02
543 596 9.406828 CAGTATAAAGTGTATGTACGCATGTAT 57.593 33.333 6.51 3.83 39.08 2.29
548 601 5.526115 AGTGTATGTACGCATGTATGTACC 58.474 41.667 16.88 7.31 40.12 3.34
550 603 6.487668 AGTGTATGTACGCATGTATGTACCTA 59.512 38.462 16.88 11.46 40.12 3.08
552 605 4.213596 TGTACGCATGTATGTACCTACG 57.786 45.455 16.88 2.59 40.12 3.51
553 606 3.627123 TGTACGCATGTATGTACCTACGT 59.373 43.478 16.88 0.00 40.12 3.57
554 607 4.813697 TGTACGCATGTATGTACCTACGTA 59.186 41.667 16.88 0.00 40.12 3.57
555 608 4.214980 ACGCATGTATGTACCTACGTAC 57.785 45.455 3.10 7.60 44.80 3.67
556 609 3.220773 CGCATGTATGTACCTACGTACG 58.779 50.000 15.01 15.01 46.71 3.67
805 988 6.948886 TGGATAGATACATCAAGTAGTCCTCC 59.051 42.308 0.00 0.00 35.85 4.30
918 1113 5.049954 CGCAGGTACTCTCAAGTAGATAGAC 60.050 48.000 0.00 0.00 38.66 2.59
1091 1286 3.332485 TGGTCAGTAACTAAAATGCCCCT 59.668 43.478 0.00 0.00 0.00 4.79
1390 1586 7.201679 GCTCATTTGCTCATTACATGACTAAGT 60.202 37.037 0.00 0.00 35.06 2.24
1419 1615 5.365025 AGCACTTATAGCTCAAGATGGAGAA 59.635 40.000 13.44 0.00 38.01 2.87
1518 1714 7.009179 TGAAGTTGACTGGAAATCTCTACAT 57.991 36.000 0.00 0.00 0.00 2.29
1584 1780 6.494491 TCAAGATGAAACCTGGTGATTCATTT 59.506 34.615 21.60 15.92 42.26 2.32
1717 1913 9.716556 ATACCAATATATCTGTACTTCTAGGGG 57.283 37.037 0.00 0.00 0.00 4.79
1833 2029 2.303311 GAGGTTACTTGAGCTTCCCAGT 59.697 50.000 0.00 0.00 0.00 4.00
1921 2117 0.382873 CATGGATGGTGAATGGTGCG 59.617 55.000 0.00 0.00 0.00 5.34
2044 2240 8.985315 TGGTGATAAAAAGCATCTTATCAGAT 57.015 30.769 12.17 0.00 42.37 2.90
2124 2320 2.186384 CCTGAGGAAGAGCAGCGG 59.814 66.667 0.00 0.00 0.00 5.52
2259 2458 4.335594 GTGCCCCTCAATAACTTGACATAC 59.664 45.833 0.00 0.00 36.46 2.39
2736 2938 3.454812 TGAAGGTGCTAGAAAGTATCCCC 59.545 47.826 0.00 0.00 0.00 4.81
2784 2986 4.503714 TTATGTCATGGAAGAACTCCCC 57.496 45.455 0.00 0.00 44.69 4.81
2805 3007 5.478679 CCCCAAATACATGCGGGATATAAAA 59.521 40.000 6.37 0.00 41.62 1.52
2928 3130 3.566742 GTCAAGGCATATGCATGTGATGA 59.433 43.478 28.07 20.63 44.36 2.92
2983 3191 0.884704 GAGACAACGGCAAGCTGGAA 60.885 55.000 5.79 0.00 0.00 3.53
3034 3249 6.530120 TCAAGGTACAGAAAGTCAAGCATAA 58.470 36.000 0.00 0.00 0.00 1.90
3096 3316 7.390996 TGCCAGTTTATAAGGTCGTTTGATTTA 59.609 33.333 0.00 0.00 0.00 1.40
3121 3343 5.624159 TCTCCTGCCTTTTGTCCATATATG 58.376 41.667 5.68 5.68 0.00 1.78
3165 3391 7.780008 ATTTTACCTTTGTTTGTTTAGGTGC 57.220 32.000 0.00 0.00 41.01 5.01
3184 3410 1.661341 CTACAATGGCTGCAGAGGAC 58.339 55.000 20.43 4.47 0.00 3.85
3228 3454 1.126488 GCATCTGGTCCAGGAGATGA 58.874 55.000 19.11 0.00 45.80 2.92
3248 3474 4.743493 TGAAAACAAGGAACAAGAAGCAC 58.257 39.130 0.00 0.00 0.00 4.40
3255 3481 0.586802 GAACAAGAAGCACACCGACC 59.413 55.000 0.00 0.00 0.00 4.79
3256 3482 1.157870 AACAAGAAGCACACCGACCG 61.158 55.000 0.00 0.00 0.00 4.79
3265 3491 3.276091 CACCGACCGCAAACAGCA 61.276 61.111 0.00 0.00 46.13 4.41
3269 3495 0.739462 CCGACCGCAAACAGCAGATA 60.739 55.000 0.00 0.00 46.13 1.98
3279 3505 4.276926 GCAAACAGCAGATATAGGAAAGGG 59.723 45.833 0.00 0.00 44.79 3.95
3288 3514 4.726825 AGATATAGGAAAGGGGAAAGTGCA 59.273 41.667 0.00 0.00 0.00 4.57
3300 3534 2.810852 GGAAAGTGCATGATAGCTAGCC 59.189 50.000 12.13 0.00 34.99 3.93
3382 3620 5.351465 TGCTATTAGTAACTGTGCTTCAAGC 59.649 40.000 1.04 1.04 42.82 4.01
3442 3708 4.445452 ACAAGCAGAACATTGCCTATTG 57.555 40.909 0.00 0.00 45.18 1.90
3482 3752 1.354031 TCCCTTTCTGTGCAGGCAATA 59.646 47.619 0.00 0.00 0.00 1.90
3511 3781 0.252479 CAATGGAGCCAGAGTCTGCT 59.748 55.000 15.10 14.73 0.00 4.24
3513 3783 1.336632 ATGGAGCCAGAGTCTGCTCC 61.337 60.000 34.02 34.02 45.69 4.70
3515 3785 1.336632 GGAGCCAGAGTCTGCTCCAT 61.337 60.000 34.81 15.47 45.28 3.41
3518 3788 0.035630 GCCAGAGTCTGCTCCATTGT 60.036 55.000 15.10 0.00 42.59 2.71
3551 3943 5.436175 TGCATGTTATACTACTTGCCATGT 58.564 37.500 11.03 0.00 44.23 3.21
3554 3946 5.811399 TGTTATACTACTTGCCATGTTGC 57.189 39.130 0.00 0.00 0.00 4.17
3578 4135 6.071391 GCCCTGAAAAGGATTAAATCTTGACA 60.071 38.462 0.00 0.00 0.00 3.58
3599 4156 8.236585 TGACAATCAAAAGGAGATTCTTTCAA 57.763 30.769 0.00 0.00 36.09 2.69
3614 4171 3.254166 TCTTTCAAAGCATGACTTCCAGC 59.746 43.478 0.00 0.00 37.75 4.85
3636 4193 3.610114 CGAAGTTTCCACATGCCTCTTTG 60.610 47.826 0.00 0.00 0.00 2.77
3646 4203 3.245371 ACATGCCTCTTTGAAGATTCCCA 60.245 43.478 0.00 0.00 33.93 4.37
3652 4209 5.186603 GCCTCTTTGAAGATTCCCAGAAATT 59.813 40.000 0.00 0.00 33.93 1.82
3658 4215 8.648698 TTTGAAGATTCCCAGAAATTATGTGA 57.351 30.769 0.00 0.00 0.00 3.58
3660 4217 8.055279 TGAAGATTCCCAGAAATTATGTGAAC 57.945 34.615 0.00 0.00 0.00 3.18
3691 4248 3.553828 TCCATCCGGTATTCTTTGGAC 57.446 47.619 0.00 0.00 32.33 4.02
3692 4249 2.159014 TCCATCCGGTATTCTTTGGACG 60.159 50.000 0.00 0.00 32.33 4.79
3695 4252 2.963432 TCCGGTATTCTTTGGACGAAC 58.037 47.619 0.00 0.00 0.00 3.95
3704 4261 2.349275 TCTTTGGACGAACGAACACAAC 59.651 45.455 0.14 0.00 0.00 3.32
3741 4324 7.976135 AATCATGAGAGGATAATAACAGTGC 57.024 36.000 0.09 0.00 0.00 4.40
3762 4345 1.139989 CGCATGATCACGTATGGGAC 58.860 55.000 0.00 0.00 38.94 4.46
3783 4366 9.137459 TGGGACAACAATTTTAATAGACAGAAA 57.863 29.630 0.00 0.00 31.92 2.52
3799 4382 7.846101 AGACAGAAATGGGAGAAGAATTTTT 57.154 32.000 0.00 0.00 0.00 1.94
3803 4386 7.069826 ACAGAAATGGGAGAAGAATTTTTCACA 59.930 33.333 10.99 7.21 31.52 3.58
3808 4391 5.246656 TGGGAGAAGAATTTTTCACATGCAT 59.753 36.000 10.99 0.00 0.00 3.96
3809 4392 5.809051 GGGAGAAGAATTTTTCACATGCATC 59.191 40.000 10.99 0.00 0.00 3.91
3833 4416 5.048504 CGGGAATACGGTAGAAGCAGTATTA 60.049 44.000 0.00 0.00 39.15 0.98
3834 4417 6.388278 GGGAATACGGTAGAAGCAGTATTAG 58.612 44.000 0.00 0.00 39.15 1.73
3861 4444 8.389779 TGCTTCAAAACAGAATAATACACTGA 57.610 30.769 0.00 0.00 35.85 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.941263 TGATGTATTTCCTTGTTTAGCGCT 59.059 37.500 17.26 17.26 0.00 5.92
67 80 5.412640 TGAACGTGTGTAATGTGGGTATAG 58.587 41.667 0.00 0.00 0.00 1.31
265 283 6.430616 CCGTTAGGGGTTAACTGAATTGTTAA 59.569 38.462 5.42 0.00 39.62 2.01
400 429 4.993705 TTCTCCCACTCACCTAAAATGT 57.006 40.909 0.00 0.00 0.00 2.71
413 442 6.084277 GTCACGTGAAATTATTTTCTCCCAC 58.916 40.000 21.95 0.00 41.54 4.61
483 515 6.310467 TCGCTGCTATAAAAACTTGTACTCAG 59.690 38.462 0.00 0.00 0.00 3.35
497 550 2.887152 TGCTCTCTCATCGCTGCTATAA 59.113 45.455 0.00 0.00 0.00 0.98
548 601 1.381100 CACGCACAAAGACGTACGTAG 59.619 52.381 22.87 13.80 41.32 3.51
550 603 0.526096 ACACGCACAAAGACGTACGT 60.526 50.000 23.04 23.04 41.32 3.57
552 605 0.925466 ACACACGCACAAAGACGTAC 59.075 50.000 0.00 0.00 41.32 3.67
553 606 2.387185 CTACACACGCACAAAGACGTA 58.613 47.619 0.00 0.00 41.32 3.57
554 607 1.205657 CTACACACGCACAAAGACGT 58.794 50.000 0.00 0.00 44.75 4.34
555 608 0.506932 CCTACACACGCACAAAGACG 59.493 55.000 0.00 0.00 0.00 4.18
556 609 1.792949 CTCCTACACACGCACAAAGAC 59.207 52.381 0.00 0.00 0.00 3.01
642 697 7.806014 GCAATCGATTCCACAAAGTTAACTTTA 59.194 33.333 28.43 16.05 43.72 1.85
805 988 8.433421 TCAAATTTACTTCTTATAAGAGGCGG 57.567 34.615 21.10 12.59 35.72 6.13
918 1113 2.066262 AGCGTATTTGTGTGGTCTTCG 58.934 47.619 0.00 0.00 0.00 3.79
990 1185 6.689177 GCAATAGTCCTCCCATTACTTTAGCT 60.689 42.308 0.00 0.00 0.00 3.32
992 1187 5.696724 CGCAATAGTCCTCCCATTACTTTAG 59.303 44.000 0.00 0.00 0.00 1.85
1209 1404 1.376543 CTTCGCTCATCCACATTGCT 58.623 50.000 0.00 0.00 0.00 3.91
1390 1586 7.015584 TCCATCTTGAGCTATAAGTGCTTCATA 59.984 37.037 9.34 0.00 41.30 2.15
1639 1835 3.236816 GTTGATGCAACGATTCAACCAG 58.763 45.455 16.00 0.00 42.04 4.00
1712 1908 2.204463 TCATCTTGCCAATGTCCCCTA 58.796 47.619 0.00 0.00 0.00 3.53
1717 1913 5.517770 GCAATAGTTTCATCTTGCCAATGTC 59.482 40.000 0.00 0.00 38.39 3.06
1921 2117 5.669164 AGAGACTCTAACTCATCCAAACC 57.331 43.478 2.19 0.00 36.91 3.27
1983 2179 1.146930 ACATGGGGCAGCAGATACG 59.853 57.895 0.00 0.00 0.00 3.06
2044 2240 3.485394 TGCTGGTGCAGAATAAAGACAA 58.515 40.909 0.00 0.00 45.31 3.18
2124 2320 3.896648 TTGAACACCTTCTTGATTCGC 57.103 42.857 0.00 0.00 0.00 4.70
2131 2327 4.322567 GAGAGCTCATTGAACACCTTCTT 58.677 43.478 17.77 0.00 0.00 2.52
2259 2458 5.107375 GCAAGCCAAGTCAACAAACATAATG 60.107 40.000 0.00 0.00 0.00 1.90
2369 2568 1.310933 CGCCTGCAAGAATTCAGCCT 61.311 55.000 17.02 0.00 34.07 4.58
2736 2938 0.809241 GGATCAGCCTCTCAAGTGCG 60.809 60.000 0.00 0.00 0.00 5.34
2784 2986 7.825681 TGGATTTTATATCCCGCATGTATTTG 58.174 34.615 0.00 0.00 37.40 2.32
2805 3007 2.148446 TAGCTGCAAATGCCTTGGAT 57.852 45.000 1.02 0.00 41.18 3.41
2928 3130 5.105269 ACGTACCATTTTCTTGGGTTGTTTT 60.105 36.000 0.00 0.00 41.35 2.43
2983 3191 9.998752 AGTATGGTAGAGTAGCTAATATTGGAT 57.001 33.333 2.52 0.00 0.00 3.41
3008 3216 4.816385 TGCTTGACTTTCTGTACCTTGAAG 59.184 41.667 0.00 0.00 0.00 3.02
3011 3222 6.801539 TTATGCTTGACTTTCTGTACCTTG 57.198 37.500 0.00 0.00 0.00 3.61
3034 3249 9.213799 TGTTCAAACAAATTAAGACAAAGCTTT 57.786 25.926 5.69 5.69 35.67 3.51
3096 3316 2.978156 TGGACAAAAGGCAGGAGATT 57.022 45.000 0.00 0.00 0.00 2.40
3121 3343 6.500684 AAATATATCCGGTCATCATGCAAC 57.499 37.500 0.00 0.00 0.00 4.17
3163 3389 0.393402 CCTCTGCAGCCATTGTAGCA 60.393 55.000 9.47 0.00 39.16 3.49
3165 3391 1.661341 GTCCTCTGCAGCCATTGTAG 58.339 55.000 9.47 0.00 40.50 2.74
3184 3410 2.171940 GCTGCTGCTTGTCGTTCG 59.828 61.111 8.53 0.00 36.03 3.95
3214 3440 3.498481 CCTTGTTTTCATCTCCTGGACCA 60.498 47.826 0.00 0.00 0.00 4.02
3228 3454 4.494484 GTGTGCTTCTTGTTCCTTGTTTT 58.506 39.130 0.00 0.00 0.00 2.43
3248 3474 3.240606 CTGCTGTTTGCGGTCGGTG 62.241 63.158 0.00 0.00 46.63 4.94
3255 3481 4.024556 CCTTTCCTATATCTGCTGTTTGCG 60.025 45.833 0.00 0.00 46.63 4.85
3256 3482 4.276926 CCCTTTCCTATATCTGCTGTTTGC 59.723 45.833 0.00 0.00 43.25 3.68
3265 3491 4.726825 TGCACTTTCCCCTTTCCTATATCT 59.273 41.667 0.00 0.00 0.00 1.98
3269 3495 3.269381 TCATGCACTTTCCCCTTTCCTAT 59.731 43.478 0.00 0.00 0.00 2.57
3279 3505 2.810852 GGCTAGCTATCATGCACTTTCC 59.189 50.000 15.72 0.00 34.99 3.13
3288 3514 4.423913 TGATCTCCTTGGCTAGCTATCAT 58.576 43.478 15.72 0.00 0.00 2.45
3300 3534 1.135915 CGGTCTGGTCTGATCTCCTTG 59.864 57.143 0.00 0.00 0.00 3.61
3358 3596 5.351465 GCTTGAAGCACAGTTACTAATAGCA 59.649 40.000 13.09 0.00 41.89 3.49
3382 3620 1.459592 CAACTAAGAACGGAACTGCGG 59.540 52.381 0.00 0.00 0.00 5.69
3442 3708 0.886563 AATGTGCAAGAGCCAGCTTC 59.113 50.000 0.00 0.00 41.13 3.86
3482 3752 2.357836 CTCCATTGCCAGCCAGGT 59.642 61.111 0.00 0.00 40.61 4.00
3511 3781 6.832520 ACATGCATACAAAGTTACAATGGA 57.167 33.333 0.00 0.00 0.00 3.41
3539 3871 0.813184 CAGGGCAACATGGCAAGTAG 59.187 55.000 6.25 0.00 46.79 2.57
3551 3943 6.496565 TCAAGATTTAATCCTTTTCAGGGCAA 59.503 34.615 0.78 0.00 41.25 4.52
3554 3946 7.466746 TGTCAAGATTTAATCCTTTTCAGGG 57.533 36.000 0.78 0.00 41.25 4.45
3578 4135 7.729116 TGCTTTGAAAGAATCTCCTTTTGATT 58.271 30.769 9.48 0.00 36.58 2.57
3599 4156 1.446907 CTTCGCTGGAAGTCATGCTT 58.553 50.000 2.57 2.57 43.80 3.91
3614 4171 1.813513 AGAGGCATGTGGAAACTTCG 58.186 50.000 0.00 0.00 0.00 3.79
3618 4175 3.569701 TCTTCAAAGAGGCATGTGGAAAC 59.430 43.478 0.00 0.00 0.00 2.78
3636 4193 7.148239 ACGTTCACATAATTTCTGGGAATCTTC 60.148 37.037 8.20 0.00 38.24 2.87
3646 4203 7.490962 TCAGTCAAACGTTCACATAATTTCT 57.509 32.000 0.00 0.00 0.00 2.52
3652 4209 4.888917 TGGATCAGTCAAACGTTCACATA 58.111 39.130 0.00 0.00 0.00 2.29
3658 4215 2.346803 CGGATGGATCAGTCAAACGTT 58.653 47.619 0.00 0.00 0.00 3.99
3660 4217 1.290203 CCGGATGGATCAGTCAAACG 58.710 55.000 0.00 0.00 37.49 3.60
3691 4248 3.978855 TCTCATGTAGTTGTGTTCGTTCG 59.021 43.478 0.00 0.00 0.00 3.95
3692 4249 4.743151 TGTCTCATGTAGTTGTGTTCGTTC 59.257 41.667 0.00 0.00 0.00 3.95
3695 4252 6.944557 TTATGTCTCATGTAGTTGTGTTCG 57.055 37.500 0.00 0.00 0.00 3.95
3704 4261 8.120140 TCCTCTCATGATTATGTCTCATGTAG 57.880 38.462 11.75 10.43 46.51 2.74
3726 4309 1.488812 TGCGGGCACTGTTATTATCCT 59.511 47.619 0.00 0.00 36.83 3.24
3727 4310 1.961793 TGCGGGCACTGTTATTATCC 58.038 50.000 0.00 0.00 36.83 2.59
3728 4311 3.138304 TCATGCGGGCACTGTTATTATC 58.862 45.455 0.00 0.00 36.83 1.75
3729 4312 3.207265 TCATGCGGGCACTGTTATTAT 57.793 42.857 0.00 0.00 36.83 1.28
3730 4313 2.700722 TCATGCGGGCACTGTTATTA 57.299 45.000 0.00 0.00 36.83 0.98
3731 4314 1.949525 GATCATGCGGGCACTGTTATT 59.050 47.619 0.00 0.00 36.83 1.40
3735 4318 1.746615 GTGATCATGCGGGCACTGT 60.747 57.895 0.00 0.00 36.83 3.55
3736 4319 2.816360 CGTGATCATGCGGGCACTG 61.816 63.158 1.07 0.00 38.10 3.66
3741 4324 0.950555 CCCATACGTGATCATGCGGG 60.951 60.000 18.40 18.40 0.00 6.13
3783 4366 5.246656 TGCATGTGAAAAATTCTTCTCCCAT 59.753 36.000 0.00 0.00 0.00 4.00
3792 4375 4.108699 TCCCGATGCATGTGAAAAATTC 57.891 40.909 2.46 0.00 0.00 2.17
3793 4376 4.533919 TTCCCGATGCATGTGAAAAATT 57.466 36.364 2.46 0.00 0.00 1.82
3794 4377 4.741321 ATTCCCGATGCATGTGAAAAAT 57.259 36.364 2.46 0.00 0.00 1.82
3799 4382 1.540146 CCGTATTCCCGATGCATGTGA 60.540 52.381 2.46 0.00 0.00 3.58
3803 4386 2.244695 TCTACCGTATTCCCGATGCAT 58.755 47.619 0.00 0.00 0.00 3.96
3808 4391 1.679680 CTGCTTCTACCGTATTCCCGA 59.320 52.381 0.00 0.00 0.00 5.14
3809 4392 1.407979 ACTGCTTCTACCGTATTCCCG 59.592 52.381 0.00 0.00 0.00 5.14
3833 4416 8.850156 AGTGTATTATTCTGTTTTGAAGCAACT 58.150 29.630 0.00 0.00 0.00 3.16
3834 4417 8.905702 CAGTGTATTATTCTGTTTTGAAGCAAC 58.094 33.333 0.00 0.00 0.00 4.17
3853 4436 4.673968 TCCAGTCCAGTTAGTCAGTGTAT 58.326 43.478 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.