Multiple sequence alignment - TraesCS7A01G478000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G478000 chr7A 100.000 6683 0 0 1 6683 671304910 671311592 0.000000e+00 12342.0
1 TraesCS7A01G478000 chr7A 97.494 1756 32 10 3013 4762 720918956 720917207 0.000000e+00 2988.0
2 TraesCS7A01G478000 chr7A 95.774 1751 64 8 3009 4756 150987163 150985420 0.000000e+00 2815.0
3 TraesCS7A01G478000 chr7A 86.871 914 116 4 4777 5688 671385626 671386537 0.000000e+00 1020.0
4 TraesCS7A01G478000 chr7A 87.392 579 54 8 686 1246 671369512 671370089 0.000000e+00 647.0
5 TraesCS7A01G478000 chr7A 78.927 261 35 10 2659 2906 671385091 671385344 6.940000e-35 159.0
6 TraesCS7A01G478000 chr7A 81.395 86 13 3 5845 5927 644039859 644039774 4.330000e-07 67.6
7 TraesCS7A01G478000 chr3A 97.216 1760 37 9 3003 4759 658884808 658886558 0.000000e+00 2968.0
8 TraesCS7A01G478000 chr3A 97.249 1745 42 6 3013 4756 638933509 638935248 0.000000e+00 2952.0
9 TraesCS7A01G478000 chr3A 96.678 1746 48 8 3012 4754 323099455 323097717 0.000000e+00 2894.0
10 TraesCS7A01G478000 chr3A 87.019 208 24 3 3012 3218 738082080 738081875 1.450000e-56 231.0
11 TraesCS7A01G478000 chr3A 81.560 141 19 5 790 930 728225095 728225228 7.090000e-20 110.0
12 TraesCS7A01G478000 chr3A 84.615 91 10 4 5845 5932 120811119 120811030 3.320000e-13 87.9
13 TraesCS7A01G478000 chr3A 83.544 79 11 2 5843 5919 82241885 82241963 9.300000e-09 73.1
14 TraesCS7A01G478000 chr6B 97.317 1752 38 8 3012 4760 642909892 642911637 0.000000e+00 2966.0
15 TraesCS7A01G478000 chr6B 84.932 73 6 1 1 73 515184266 515184333 1.200000e-07 69.4
16 TraesCS7A01G478000 chr4A 96.905 1745 43 9 3012 4753 97262423 97264159 0.000000e+00 2913.0
17 TraesCS7A01G478000 chr4A 96.564 1746 42 8 3012 4754 494067490 494069220 0.000000e+00 2876.0
18 TraesCS7A01G478000 chr4A 81.345 461 65 12 797 1244 554853390 554853842 8.240000e-94 355.0
19 TraesCS7A01G478000 chr6A 96.566 1747 49 8 3012 4753 80884005 80882265 0.000000e+00 2883.0
20 TraesCS7A01G478000 chr7D 90.282 2202 100 50 123 2295 579569833 579571949 0.000000e+00 2776.0
21 TraesCS7A01G478000 chr7D 91.471 809 63 4 5042 5845 579573766 579574573 0.000000e+00 1107.0
22 TraesCS7A01G478000 chr7D 94.158 291 13 1 2453 2739 579571950 579572240 2.210000e-119 440.0
23 TraesCS7A01G478000 chr7D 96.186 236 9 0 4754 4989 579573516 579573751 2.920000e-103 387.0
24 TraesCS7A01G478000 chr7D 90.034 291 15 4 2734 3012 579573236 579573524 1.370000e-96 364.0
25 TraesCS7A01G478000 chr2D 94.805 847 27 4 5854 6683 588137893 588138739 0.000000e+00 1304.0
26 TraesCS7A01G478000 chr2D 90.217 92 9 0 797 888 99660764 99660673 3.270000e-23 121.0
27 TraesCS7A01G478000 chr5D 94.049 857 32 3 5845 6683 413354835 413355690 0.000000e+00 1282.0
28 TraesCS7A01G478000 chr5D 91.781 730 55 2 5959 6683 170304404 170305133 0.000000e+00 1011.0
29 TraesCS7A01G478000 chr2A 92.571 848 44 7 5854 6683 214308620 214309466 0.000000e+00 1199.0
30 TraesCS7A01G478000 chr2A 92.208 847 47 3 5854 6683 214346716 214347560 0.000000e+00 1181.0
31 TraesCS7A01G478000 chr2B 93.733 718 30 5 5966 6683 53715245 53715947 0.000000e+00 1062.0
32 TraesCS7A01G478000 chr2B 75.676 370 69 14 793 1152 151102921 151103279 1.490000e-36 165.0
33 TraesCS7A01G478000 chr2B 88.430 121 9 2 101 217 382234007 382234126 2.510000e-29 141.0
34 TraesCS7A01G478000 chr2B 87.671 73 9 0 1 73 61265667 61265739 1.190000e-12 86.1
35 TraesCS7A01G478000 chr2B 97.143 35 0 1 5846 5879 753909237 753909271 2.600000e-04 58.4
36 TraesCS7A01G478000 chr4B 93.512 709 31 5 5975 6683 613022215 613021522 0.000000e+00 1040.0
37 TraesCS7A01G478000 chr4B 82.112 464 64 11 799 1250 64775100 64774644 4.890000e-101 379.0
38 TraesCS7A01G478000 chr4B 94.845 97 5 0 5854 5950 613022309 613022213 1.160000e-32 152.0
39 TraesCS7A01G478000 chr3B 93.512 709 30 8 5975 6683 741667995 741667303 0.000000e+00 1040.0
40 TraesCS7A01G478000 chr3B 92.758 718 37 6 5966 6683 776021596 776022298 0.000000e+00 1024.0
41 TraesCS7A01G478000 chr3B 94.845 97 5 0 5854 5950 741668089 741667993 1.160000e-32 152.0
42 TraesCS7A01G478000 chr3B 94.845 97 5 0 5854 5950 776021511 776021607 1.160000e-32 152.0
43 TraesCS7A01G478000 chr3B 81.560 141 19 5 790 930 805093969 805094102 7.090000e-20 110.0
44 TraesCS7A01G478000 chr3B 91.781 73 6 0 1 73 752167985 752167913 1.190000e-17 102.0
45 TraesCS7A01G478000 chr1B 93.230 709 31 6 5975 6683 634182972 634182281 0.000000e+00 1027.0
46 TraesCS7A01G478000 chr1B 94.845 97 5 0 5854 5950 634183066 634182970 1.160000e-32 152.0
47 TraesCS7A01G478000 chr1B 90.123 81 6 2 1 81 441383895 441383973 3.300000e-18 104.0
48 TraesCS7A01G478000 chr1B 93.182 44 2 1 36 78 369511435 369511392 5.590000e-06 63.9
49 TraesCS7A01G478000 chr5A 90.000 720 26 10 5965 6683 517957429 517956755 0.000000e+00 889.0
50 TraesCS7A01G478000 chr5A 94.845 97 5 0 5854 5950 517957513 517957417 1.160000e-32 152.0
51 TraesCS7A01G478000 chr5A 93.151 73 5 0 1 73 385319046 385318974 2.550000e-19 108.0
52 TraesCS7A01G478000 chr5A 92.857 70 5 0 4 73 512798856 512798787 1.190000e-17 102.0
53 TraesCS7A01G478000 chr5A 93.750 48 3 0 5852 5899 569170277 569170230 9.300000e-09 73.1
54 TraesCS7A01G478000 chr4D 80.992 484 72 13 776 1247 44756599 44756124 3.810000e-97 366.0
55 TraesCS7A01G478000 chr7B 93.548 62 4 0 13 74 496775731 496775792 7.140000e-15 93.5
56 TraesCS7A01G478000 chr7B 93.478 46 2 1 5841 5885 619431819 619431864 4.330000e-07 67.6
57 TraesCS7A01G478000 chr7B 97.143 35 0 1 5854 5888 581401455 581401422 2.600000e-04 58.4
58 TraesCS7A01G478000 chr5B 92.500 40 2 1 5843 5882 438027355 438027393 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G478000 chr7A 671304910 671311592 6682 False 12342.0 12342 100.0000 1 6683 1 chr7A.!!$F1 6682
1 TraesCS7A01G478000 chr7A 720917207 720918956 1749 True 2988.0 2988 97.4940 3013 4762 1 chr7A.!!$R3 1749
2 TraesCS7A01G478000 chr7A 150985420 150987163 1743 True 2815.0 2815 95.7740 3009 4756 1 chr7A.!!$R1 1747
3 TraesCS7A01G478000 chr7A 671369512 671370089 577 False 647.0 647 87.3920 686 1246 1 chr7A.!!$F2 560
4 TraesCS7A01G478000 chr7A 671385091 671386537 1446 False 589.5 1020 82.8990 2659 5688 2 chr7A.!!$F3 3029
5 TraesCS7A01G478000 chr3A 658884808 658886558 1750 False 2968.0 2968 97.2160 3003 4759 1 chr3A.!!$F3 1756
6 TraesCS7A01G478000 chr3A 638933509 638935248 1739 False 2952.0 2952 97.2490 3013 4756 1 chr3A.!!$F2 1743
7 TraesCS7A01G478000 chr3A 323097717 323099455 1738 True 2894.0 2894 96.6780 3012 4754 1 chr3A.!!$R2 1742
8 TraesCS7A01G478000 chr6B 642909892 642911637 1745 False 2966.0 2966 97.3170 3012 4760 1 chr6B.!!$F2 1748
9 TraesCS7A01G478000 chr4A 97262423 97264159 1736 False 2913.0 2913 96.9050 3012 4753 1 chr4A.!!$F1 1741
10 TraesCS7A01G478000 chr4A 494067490 494069220 1730 False 2876.0 2876 96.5640 3012 4754 1 chr4A.!!$F2 1742
11 TraesCS7A01G478000 chr6A 80882265 80884005 1740 True 2883.0 2883 96.5660 3012 4753 1 chr6A.!!$R1 1741
12 TraesCS7A01G478000 chr7D 579569833 579574573 4740 False 1014.8 2776 92.4262 123 5845 5 chr7D.!!$F1 5722
13 TraesCS7A01G478000 chr2D 588137893 588138739 846 False 1304.0 1304 94.8050 5854 6683 1 chr2D.!!$F1 829
14 TraesCS7A01G478000 chr5D 413354835 413355690 855 False 1282.0 1282 94.0490 5845 6683 1 chr5D.!!$F2 838
15 TraesCS7A01G478000 chr5D 170304404 170305133 729 False 1011.0 1011 91.7810 5959 6683 1 chr5D.!!$F1 724
16 TraesCS7A01G478000 chr2A 214308620 214309466 846 False 1199.0 1199 92.5710 5854 6683 1 chr2A.!!$F1 829
17 TraesCS7A01G478000 chr2A 214346716 214347560 844 False 1181.0 1181 92.2080 5854 6683 1 chr2A.!!$F2 829
18 TraesCS7A01G478000 chr2B 53715245 53715947 702 False 1062.0 1062 93.7330 5966 6683 1 chr2B.!!$F1 717
19 TraesCS7A01G478000 chr4B 613021522 613022309 787 True 596.0 1040 94.1785 5854 6683 2 chr4B.!!$R2 829
20 TraesCS7A01G478000 chr3B 741667303 741668089 786 True 596.0 1040 94.1785 5854 6683 2 chr3B.!!$R2 829
21 TraesCS7A01G478000 chr3B 776021511 776022298 787 False 588.0 1024 93.8015 5854 6683 2 chr3B.!!$F2 829
22 TraesCS7A01G478000 chr1B 634182281 634183066 785 True 589.5 1027 94.0375 5854 6683 2 chr1B.!!$R2 829
23 TraesCS7A01G478000 chr5A 517956755 517957513 758 True 520.5 889 92.4225 5854 6683 2 chr5A.!!$R4 829

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
481 487 0.179062 ATTGGAGCTCGCTGATGACC 60.179 55.000 7.83 0.0 0.00 4.02 F
2383 2415 0.324943 CCACGAACTGATCCCCTTGT 59.675 55.000 0.00 0.0 0.00 3.16 F
2486 2518 0.036732 TGTTCTTCCTTCCGCAGCAT 59.963 50.000 0.00 0.0 0.00 3.79 F
2497 2529 0.095245 CCGCAGCATGTACGACAAAG 59.905 55.000 5.85 0.0 39.31 2.77 F
3358 4604 1.067635 TCGGTTACAAACTAGGGACGC 60.068 52.381 0.00 0.0 0.00 5.19 F
4714 5969 0.453793 TTTGTGCACCAAACTGACCG 59.546 50.000 15.69 0.0 38.12 4.79 F
5517 6772 0.038310 TCGAAGGTGAGCTGGAGAGA 59.962 55.000 0.00 0.0 0.00 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2387 2419 0.036765 TTTTCTCCCACATCCGTCCG 60.037 55.000 0.00 0.00 0.00 4.79 R
3481 4729 1.345415 AGCCATGGTGCTTCCTTTTTG 59.655 47.619 14.67 0.00 38.85 2.44 R
3516 4764 6.646240 GGTAATCTTAGTTAACGTTGACCACA 59.354 38.462 18.49 2.99 0.00 4.17 R
3826 5080 6.649973 TCGGATGGTACGAAACATTTTAAAGA 59.350 34.615 0.00 0.00 37.42 2.52 R
4963 6218 0.589223 ATCTCGTCGCCGATCTTCTC 59.411 55.000 0.00 0.00 43.27 2.87 R
5528 6783 0.033699 AAGCTTCAGAATGGCCTCCC 60.034 55.000 3.32 0.00 36.16 4.30 R
6593 7895 3.642848 ACCCTGCATTCAAAGACAACATT 59.357 39.130 0.00 0.00 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.687210 CATCACATTCAATGGATATAAAAGGTG 57.313 33.333 1.58 0.00 33.60 4.00
27 28 9.645128 ATCACATTCAATGGATATAAAAGGTGA 57.355 29.630 1.58 3.36 34.11 4.02
28 29 9.473007 TCACATTCAATGGATATAAAAGGTGAA 57.527 29.630 1.58 0.00 33.60 3.18
33 34 9.919416 TTCAATGGATATAAAAGGTGAATGAGA 57.081 29.630 0.00 0.00 0.00 3.27
34 35 9.565090 TCAATGGATATAAAAGGTGAATGAGAG 57.435 33.333 0.00 0.00 0.00 3.20
35 36 7.992754 ATGGATATAAAAGGTGAATGAGAGC 57.007 36.000 0.00 0.00 0.00 4.09
36 37 6.899089 TGGATATAAAAGGTGAATGAGAGCA 58.101 36.000 0.00 0.00 0.00 4.26
37 38 7.345691 TGGATATAAAAGGTGAATGAGAGCAA 58.654 34.615 0.00 0.00 0.00 3.91
38 39 7.833682 TGGATATAAAAGGTGAATGAGAGCAAA 59.166 33.333 0.00 0.00 0.00 3.68
39 40 8.131731 GGATATAAAAGGTGAATGAGAGCAAAC 58.868 37.037 0.00 0.00 0.00 2.93
40 41 8.814038 ATATAAAAGGTGAATGAGAGCAAACT 57.186 30.769 0.00 0.00 0.00 2.66
41 42 9.905713 ATATAAAAGGTGAATGAGAGCAAACTA 57.094 29.630 0.00 0.00 0.00 2.24
42 43 6.959639 AAAAGGTGAATGAGAGCAAACTAA 57.040 33.333 0.00 0.00 0.00 2.24
43 44 6.959639 AAAGGTGAATGAGAGCAAACTAAA 57.040 33.333 0.00 0.00 0.00 1.85
44 45 7.530426 AAAGGTGAATGAGAGCAAACTAAAT 57.470 32.000 0.00 0.00 0.00 1.40
45 46 6.749923 AGGTGAATGAGAGCAAACTAAATC 57.250 37.500 0.00 0.00 0.00 2.17
46 47 6.479884 AGGTGAATGAGAGCAAACTAAATCT 58.520 36.000 0.00 0.00 0.00 2.40
47 48 6.597280 AGGTGAATGAGAGCAAACTAAATCTC 59.403 38.462 0.00 0.00 38.91 2.75
54 55 8.298729 TGAGAGCAAACTAAATCTCATCTAGA 57.701 34.615 0.00 0.00 42.36 2.43
83 84 9.788960 AGTTCTAGCAAAACTGTAAAAGAAAAG 57.211 29.630 0.00 0.00 35.68 2.27
84 85 9.020813 GTTCTAGCAAAACTGTAAAAGAAAAGG 57.979 33.333 0.00 0.00 0.00 3.11
85 86 8.514330 TCTAGCAAAACTGTAAAAGAAAAGGA 57.486 30.769 0.00 0.00 0.00 3.36
86 87 9.131791 TCTAGCAAAACTGTAAAAGAAAAGGAT 57.868 29.630 0.00 0.00 0.00 3.24
89 90 9.750125 AGCAAAACTGTAAAAGAAAAGGATAAG 57.250 29.630 0.00 0.00 0.00 1.73
90 91 8.978539 GCAAAACTGTAAAAGAAAAGGATAAGG 58.021 33.333 0.00 0.00 0.00 2.69
91 92 8.978539 CAAAACTGTAAAAGAAAAGGATAAGGC 58.021 33.333 0.00 0.00 0.00 4.35
92 93 7.833285 AACTGTAAAAGAAAAGGATAAGGCA 57.167 32.000 0.00 0.00 0.00 4.75
93 94 7.833285 ACTGTAAAAGAAAAGGATAAGGCAA 57.167 32.000 0.00 0.00 0.00 4.52
94 95 8.245195 ACTGTAAAAGAAAAGGATAAGGCAAA 57.755 30.769 0.00 0.00 0.00 3.68
95 96 8.360390 ACTGTAAAAGAAAAGGATAAGGCAAAG 58.640 33.333 0.00 0.00 0.00 2.77
96 97 7.666623 TGTAAAAGAAAAGGATAAGGCAAAGG 58.333 34.615 0.00 0.00 0.00 3.11
97 98 4.808414 AAGAAAAGGATAAGGCAAAGGC 57.192 40.909 0.00 0.00 40.13 4.35
98 99 3.778265 AGAAAAGGATAAGGCAAAGGCA 58.222 40.909 0.00 0.00 43.71 4.75
99 100 3.511540 AGAAAAGGATAAGGCAAAGGCAC 59.488 43.478 0.00 0.00 43.71 5.01
100 101 1.463674 AAGGATAAGGCAAAGGCACG 58.536 50.000 0.00 0.00 43.71 5.34
101 102 0.394352 AGGATAAGGCAAAGGCACGG 60.394 55.000 0.00 0.00 43.71 4.94
102 103 1.433471 GATAAGGCAAAGGCACGGC 59.567 57.895 0.00 0.00 43.71 5.68
103 104 1.304052 ATAAGGCAAAGGCACGGCA 60.304 52.632 0.00 0.00 43.71 5.69
104 105 1.595093 ATAAGGCAAAGGCACGGCAC 61.595 55.000 0.00 0.00 43.71 5.01
119 120 0.663153 GGCACGGCATCTATTTGTCC 59.337 55.000 0.00 0.00 0.00 4.02
120 121 0.663153 GCACGGCATCTATTTGTCCC 59.337 55.000 0.00 0.00 0.00 4.46
121 122 1.747206 GCACGGCATCTATTTGTCCCT 60.747 52.381 0.00 0.00 0.00 4.20
183 184 7.953005 AATTGAGTTGTATCTGAGAGAGAGA 57.047 36.000 0.00 0.00 32.80 3.10
184 185 7.572523 ATTGAGTTGTATCTGAGAGAGAGAG 57.427 40.000 0.00 0.00 32.80 3.20
203 204 6.017192 AGAGAGTAATACAGTGGGTGAGAAA 58.983 40.000 0.00 0.00 0.00 2.52
205 206 6.644347 AGAGTAATACAGTGGGTGAGAAATG 58.356 40.000 0.00 0.00 0.00 2.32
215 216 2.436417 GGTGAGAAATGGCTGCTAACA 58.564 47.619 0.00 0.00 0.00 2.41
250 251 6.738832 GGTGTAGATCTTTTTAGGAACACC 57.261 41.667 19.31 19.31 46.10 4.16
271 272 0.586319 AACGTGGTTGTTGCGATCAG 59.414 50.000 0.00 0.00 0.00 2.90
286 287 2.129555 ATCAGTGTGGTGCTGGGTCC 62.130 60.000 0.00 0.00 34.89 4.46
439 443 5.882557 TCCCATCTTTTTCTCAGAGCAATAC 59.117 40.000 0.00 0.00 0.00 1.89
441 445 5.067023 CCATCTTTTTCTCAGAGCAATACCC 59.933 44.000 0.00 0.00 0.00 3.69
459 465 1.046472 CCCGTCCCACCTATACAGCA 61.046 60.000 0.00 0.00 0.00 4.41
466 472 3.072915 TCCCACCTATACAGCATGATTGG 59.927 47.826 0.00 0.00 39.69 3.16
467 473 3.072915 CCCACCTATACAGCATGATTGGA 59.927 47.826 0.00 0.00 39.69 3.53
476 482 0.812811 GCATGATTGGAGCTCGCTGA 60.813 55.000 7.83 0.00 0.00 4.26
477 483 1.880271 CATGATTGGAGCTCGCTGAT 58.120 50.000 7.83 0.00 0.00 2.90
478 484 1.531578 CATGATTGGAGCTCGCTGATG 59.468 52.381 7.83 0.97 0.00 3.07
479 485 0.826062 TGATTGGAGCTCGCTGATGA 59.174 50.000 7.83 0.00 0.00 2.92
480 486 1.216122 GATTGGAGCTCGCTGATGAC 58.784 55.000 7.83 0.00 0.00 3.06
481 487 0.179062 ATTGGAGCTCGCTGATGACC 60.179 55.000 7.83 0.00 0.00 4.02
482 488 1.543944 TTGGAGCTCGCTGATGACCA 61.544 55.000 7.83 0.00 0.00 4.02
483 489 1.332889 TGGAGCTCGCTGATGACCAT 61.333 55.000 7.83 0.00 0.00 3.55
484 490 0.676184 GGAGCTCGCTGATGACCATA 59.324 55.000 7.83 0.00 0.00 2.74
485 491 1.604185 GGAGCTCGCTGATGACCATAC 60.604 57.143 7.83 0.00 0.00 2.39
486 492 1.339610 GAGCTCGCTGATGACCATACT 59.660 52.381 0.00 0.00 0.00 2.12
487 493 1.068281 AGCTCGCTGATGACCATACTG 59.932 52.381 0.00 0.00 0.00 2.74
566 573 5.577945 GGAATACCATGTGTTTTGCATCAAG 59.422 40.000 0.00 0.00 35.97 3.02
571 578 5.879223 ACCATGTGTTTTGCATCAAGAAAAA 59.121 32.000 0.00 0.00 32.19 1.94
585 592 7.568861 GCATCAAGAAAAACTGCATTCTTTCTG 60.569 37.037 6.18 9.34 41.79 3.02
597 604 8.364142 ACTGCATTCTTTCTGTATAGATACTCC 58.636 37.037 0.00 0.00 34.41 3.85
598 605 8.484214 TGCATTCTTTCTGTATAGATACTCCT 57.516 34.615 1.60 0.00 34.41 3.69
599 606 9.588096 TGCATTCTTTCTGTATAGATACTCCTA 57.412 33.333 1.60 0.00 34.41 2.94
641 648 9.788960 GATAGAGAAGAGAAGAGAAGAGAAAAC 57.211 37.037 0.00 0.00 0.00 2.43
728 738 2.933769 GCAATGAGCACAACAAGTACC 58.066 47.619 0.00 0.00 44.79 3.34
737 747 1.073284 ACAACAAGTACCGCCCAAGAT 59.927 47.619 0.00 0.00 0.00 2.40
755 765 1.678598 ATGCATCAAATGGTGGCGGG 61.679 55.000 0.00 0.00 0.00 6.13
756 766 2.051518 GCATCAAATGGTGGCGGGA 61.052 57.895 0.00 0.00 0.00 5.14
914 924 2.970324 TTCCGCAACACGCTGGAC 60.970 61.111 0.00 0.00 41.13 4.02
951 961 1.368374 GTTTGGTTTCGTCGCCGTG 60.368 57.895 0.00 0.00 35.01 4.94
1103 1131 0.738975 TGCCTATTCGTCGACTCCAG 59.261 55.000 14.70 5.28 0.00 3.86
1164 1192 2.516460 ACGATAGCGCTCCGGACT 60.516 61.111 27.79 11.11 42.48 3.85
1189 1217 3.754068 CAGCCTGCTTCAACTGCA 58.246 55.556 0.00 0.00 38.81 4.41
1255 1283 5.838531 CGAAGGTCAGTTAATCCTAGTCT 57.161 43.478 0.00 0.00 0.00 3.24
1273 1301 9.524496 TCCTAGTCTGTACTAAACACAATTCTA 57.476 33.333 0.00 0.00 37.75 2.10
1325 1353 4.753107 CACGTACCTTGGTGAACAGTAAAT 59.247 41.667 2.03 0.00 36.25 1.40
1419 1448 8.728337 TCATTCATAGAGGTCTGATCAAAAAG 57.272 34.615 0.00 0.00 0.00 2.27
1423 1452 9.573166 TTCATAGAGGTCTGATCAAAAAGAAAA 57.427 29.630 0.00 0.00 0.00 2.29
1448 1477 7.713764 AAAATGCTTCAACAGGTTATTGTTC 57.286 32.000 0.00 0.00 39.17 3.18
1454 1483 3.500680 TCAACAGGTTATTGTTCGAAGCC 59.499 43.478 0.00 0.00 39.17 4.35
1472 1501 5.560953 CGAAGCCTTTTGAAGAGTCGATTTT 60.561 40.000 0.00 0.00 31.75 1.82
1492 1521 1.158434 GTATTTTTGCCCGGACGTCA 58.842 50.000 18.91 0.00 0.00 4.35
1493 1522 1.135888 GTATTTTTGCCCGGACGTCAC 60.136 52.381 18.91 5.92 0.00 3.67
1495 1524 2.888464 TTTTTGCCCGGACGTCACCA 62.888 55.000 18.91 5.27 0.00 4.17
1496 1525 4.612412 TTGCCCGGACGTCACCAC 62.612 66.667 18.91 4.41 0.00 4.16
1517 1548 6.475402 ACCACTTCGTTTCATCACAAAATTTC 59.525 34.615 0.00 0.00 0.00 2.17
1670 1701 0.741915 CTCGTGGCTAGTCTCCCTTC 59.258 60.000 0.00 0.00 0.00 3.46
1676 1707 4.202264 CGTGGCTAGTCTCCCTTCATTTAT 60.202 45.833 0.00 0.00 0.00 1.40
1678 1709 4.103153 TGGCTAGTCTCCCTTCATTTATGG 59.897 45.833 0.00 0.00 0.00 2.74
1716 1747 8.725405 TCCGAATGCTTAATAACAAACATAGA 57.275 30.769 0.00 0.00 0.00 1.98
1898 1930 3.914426 ATCGTGCTCTTTTATCACCCT 57.086 42.857 0.00 0.00 0.00 4.34
1909 1941 6.346096 TCTTTTATCACCCTCGAAACCATAG 58.654 40.000 0.00 0.00 0.00 2.23
2073 2105 2.166254 AGCTGAAGCAAGAGAGAGTAGC 59.834 50.000 4.90 0.00 45.16 3.58
2074 2106 2.738321 GCTGAAGCAAGAGAGAGTAGCC 60.738 54.545 0.00 0.00 41.59 3.93
2075 2107 2.760092 CTGAAGCAAGAGAGAGTAGCCT 59.240 50.000 0.00 0.00 0.00 4.58
2076 2108 3.951037 CTGAAGCAAGAGAGAGTAGCCTA 59.049 47.826 0.00 0.00 0.00 3.93
2077 2109 3.951037 TGAAGCAAGAGAGAGTAGCCTAG 59.049 47.826 0.00 0.00 0.00 3.02
2078 2110 2.306847 AGCAAGAGAGAGTAGCCTAGC 58.693 52.381 0.00 0.00 0.00 3.42
2079 2111 1.339929 GCAAGAGAGAGTAGCCTAGCC 59.660 57.143 0.00 0.00 0.00 3.93
2080 2112 2.944129 CAAGAGAGAGTAGCCTAGCCT 58.056 52.381 0.00 0.00 0.00 4.58
2081 2113 3.749310 GCAAGAGAGAGTAGCCTAGCCTA 60.749 52.174 0.00 0.00 0.00 3.93
2082 2114 3.782656 AGAGAGAGTAGCCTAGCCTAC 57.217 52.381 2.61 2.61 38.34 3.18
2083 2115 2.374170 AGAGAGAGTAGCCTAGCCTACC 59.626 54.545 7.25 0.11 38.74 3.18
2084 2116 2.106857 GAGAGAGTAGCCTAGCCTACCA 59.893 54.545 7.25 0.00 38.74 3.25
2085 2117 2.158579 AGAGAGTAGCCTAGCCTACCAC 60.159 54.545 7.25 3.00 38.74 4.16
2100 2132 3.695060 CCTACCACAGTACCACTAGTCTG 59.305 52.174 7.56 7.56 32.85 3.51
2148 2180 7.998964 TGGTGGATTCCTCCTTCTTTTATAATC 59.001 37.037 21.39 0.00 42.59 1.75
2221 2253 8.421249 AATATTTCACTCACCCTCAAAATTCA 57.579 30.769 0.00 0.00 0.00 2.57
2229 2261 9.143631 CACTCACCCTCAAAATTCATAAATTTC 57.856 33.333 0.00 0.00 42.82 2.17
2256 2288 1.376609 CTCCCAAATGCCTACACCGC 61.377 60.000 0.00 0.00 0.00 5.68
2295 2327 5.992829 TGCAAGAAACACGAAGAATAGGTAA 59.007 36.000 0.00 0.00 0.00 2.85
2297 2329 6.961554 GCAAGAAACACGAAGAATAGGTAATG 59.038 38.462 0.00 0.00 0.00 1.90
2298 2330 7.360946 GCAAGAAACACGAAGAATAGGTAATGT 60.361 37.037 0.00 0.00 0.00 2.71
2299 2331 8.504005 CAAGAAACACGAAGAATAGGTAATGTT 58.496 33.333 0.00 0.00 0.00 2.71
2300 2332 8.617290 AGAAACACGAAGAATAGGTAATGTTT 57.383 30.769 0.00 0.00 40.65 2.83
2301 2333 8.504005 AGAAACACGAAGAATAGGTAATGTTTG 58.496 33.333 3.93 0.00 38.70 2.93
2302 2334 7.972832 AACACGAAGAATAGGTAATGTTTGA 57.027 32.000 0.00 0.00 0.00 2.69
2303 2335 7.972832 ACACGAAGAATAGGTAATGTTTGAA 57.027 32.000 0.00 0.00 0.00 2.69
2304 2336 8.385898 ACACGAAGAATAGGTAATGTTTGAAA 57.614 30.769 0.00 0.00 0.00 2.69
2305 2337 8.842280 ACACGAAGAATAGGTAATGTTTGAAAA 58.158 29.630 0.00 0.00 0.00 2.29
2306 2338 9.672086 CACGAAGAATAGGTAATGTTTGAAAAA 57.328 29.630 0.00 0.00 0.00 1.94
2330 2362 5.947228 AAAGATGATGGTATTGTATGCGG 57.053 39.130 0.00 0.00 0.00 5.69
2331 2363 3.942829 AGATGATGGTATTGTATGCGGG 58.057 45.455 0.00 0.00 0.00 6.13
2332 2364 1.890876 TGATGGTATTGTATGCGGGC 58.109 50.000 0.00 0.00 0.00 6.13
2333 2365 1.141858 TGATGGTATTGTATGCGGGCA 59.858 47.619 0.00 0.00 0.00 5.36
2334 2366 1.806542 GATGGTATTGTATGCGGGCAG 59.193 52.381 0.00 0.00 0.00 4.85
2344 2376 3.876198 GCGGGCAGCGTTGTATGG 61.876 66.667 0.00 0.00 35.41 2.74
2345 2377 2.435938 CGGGCAGCGTTGTATGGT 60.436 61.111 0.00 0.00 0.00 3.55
2346 2378 2.749865 CGGGCAGCGTTGTATGGTG 61.750 63.158 0.00 0.00 35.82 4.17
2347 2379 2.406616 GGGCAGCGTTGTATGGTGG 61.407 63.158 0.00 0.00 33.49 4.61
2348 2380 2.485122 GCAGCGTTGTATGGTGGC 59.515 61.111 0.00 0.00 33.49 5.01
2349 2381 2.040544 GCAGCGTTGTATGGTGGCT 61.041 57.895 0.00 0.00 33.49 4.75
2350 2382 1.586154 GCAGCGTTGTATGGTGGCTT 61.586 55.000 0.00 0.00 33.49 4.35
2351 2383 0.881118 CAGCGTTGTATGGTGGCTTT 59.119 50.000 0.00 0.00 0.00 3.51
2352 2384 1.135689 CAGCGTTGTATGGTGGCTTTC 60.136 52.381 0.00 0.00 0.00 2.62
2353 2385 0.878416 GCGTTGTATGGTGGCTTTCA 59.122 50.000 0.00 0.00 0.00 2.69
2354 2386 1.135689 GCGTTGTATGGTGGCTTTCAG 60.136 52.381 0.00 0.00 0.00 3.02
2355 2387 2.151202 CGTTGTATGGTGGCTTTCAGT 58.849 47.619 0.00 0.00 0.00 3.41
2356 2388 3.331150 CGTTGTATGGTGGCTTTCAGTA 58.669 45.455 0.00 0.00 0.00 2.74
2357 2389 3.938963 CGTTGTATGGTGGCTTTCAGTAT 59.061 43.478 0.00 0.00 0.00 2.12
2358 2390 4.034048 CGTTGTATGGTGGCTTTCAGTATC 59.966 45.833 0.00 0.00 0.00 2.24
2359 2391 4.150897 TGTATGGTGGCTTTCAGTATCC 57.849 45.455 0.00 0.00 0.00 2.59
2360 2392 2.332063 ATGGTGGCTTTCAGTATCCG 57.668 50.000 0.00 0.00 0.00 4.18
2361 2393 0.981183 TGGTGGCTTTCAGTATCCGT 59.019 50.000 0.00 0.00 0.00 4.69
2362 2394 1.338674 TGGTGGCTTTCAGTATCCGTG 60.339 52.381 0.00 0.00 0.00 4.94
2363 2395 1.338769 GGTGGCTTTCAGTATCCGTGT 60.339 52.381 0.00 0.00 0.00 4.49
2364 2396 2.000447 GTGGCTTTCAGTATCCGTGTC 59.000 52.381 0.00 0.00 0.00 3.67
2365 2397 1.066430 TGGCTTTCAGTATCCGTGTCC 60.066 52.381 0.00 0.00 0.00 4.02
2366 2398 1.066430 GGCTTTCAGTATCCGTGTCCA 60.066 52.381 0.00 0.00 0.00 4.02
2367 2399 2.000447 GCTTTCAGTATCCGTGTCCAC 59.000 52.381 0.00 0.00 0.00 4.02
2378 2410 3.139029 GTGTCCACGAACTGATCCC 57.861 57.895 0.00 0.00 0.00 3.85
2379 2411 0.391263 GTGTCCACGAACTGATCCCC 60.391 60.000 0.00 0.00 0.00 4.81
2380 2412 0.544357 TGTCCACGAACTGATCCCCT 60.544 55.000 0.00 0.00 0.00 4.79
2381 2413 0.613777 GTCCACGAACTGATCCCCTT 59.386 55.000 0.00 0.00 0.00 3.95
2382 2414 0.613260 TCCACGAACTGATCCCCTTG 59.387 55.000 0.00 0.00 0.00 3.61
2383 2415 0.324943 CCACGAACTGATCCCCTTGT 59.675 55.000 0.00 0.00 0.00 3.16
2384 2416 1.676014 CCACGAACTGATCCCCTTGTC 60.676 57.143 0.00 0.00 0.00 3.18
2385 2417 0.613777 ACGAACTGATCCCCTTGTCC 59.386 55.000 0.00 0.00 0.00 4.02
2386 2418 0.460284 CGAACTGATCCCCTTGTCCG 60.460 60.000 0.00 0.00 0.00 4.79
2387 2419 0.744771 GAACTGATCCCCTTGTCCGC 60.745 60.000 0.00 0.00 0.00 5.54
2388 2420 2.202932 CTGATCCCCTTGTCCGCG 60.203 66.667 0.00 0.00 0.00 6.46
2389 2421 3.740128 CTGATCCCCTTGTCCGCGG 62.740 68.421 22.12 22.12 0.00 6.46
2390 2422 3.467226 GATCCCCTTGTCCGCGGA 61.467 66.667 27.28 27.28 0.00 5.54
2391 2423 3.735037 GATCCCCTTGTCCGCGGAC 62.735 68.421 43.88 43.88 44.77 4.79
2402 2434 4.873129 CGCGGACGGATGTGGGAG 62.873 72.222 0.00 0.00 34.97 4.30
2403 2435 3.458163 GCGGACGGATGTGGGAGA 61.458 66.667 0.00 0.00 0.00 3.71
2404 2436 3.014085 GCGGACGGATGTGGGAGAA 62.014 63.158 0.00 0.00 0.00 2.87
2405 2437 1.594833 CGGACGGATGTGGGAGAAA 59.405 57.895 0.00 0.00 0.00 2.52
2406 2438 0.036765 CGGACGGATGTGGGAGAAAA 60.037 55.000 0.00 0.00 0.00 2.29
2407 2439 1.450025 GGACGGATGTGGGAGAAAAC 58.550 55.000 0.00 0.00 0.00 2.43
2408 2440 1.003233 GGACGGATGTGGGAGAAAACT 59.997 52.381 0.00 0.00 0.00 2.66
2409 2441 2.552373 GGACGGATGTGGGAGAAAACTT 60.552 50.000 0.00 0.00 0.00 2.66
2410 2442 2.484264 GACGGATGTGGGAGAAAACTTG 59.516 50.000 0.00 0.00 0.00 3.16
2411 2443 1.200020 CGGATGTGGGAGAAAACTTGC 59.800 52.381 0.00 0.00 0.00 4.01
2412 2444 1.200020 GGATGTGGGAGAAAACTTGCG 59.800 52.381 0.00 0.00 0.00 4.85
2413 2445 1.200020 GATGTGGGAGAAAACTTGCGG 59.800 52.381 0.00 0.00 0.00 5.69
2414 2446 0.821711 TGTGGGAGAAAACTTGCGGG 60.822 55.000 0.00 0.00 0.00 6.13
2415 2447 0.822121 GTGGGAGAAAACTTGCGGGT 60.822 55.000 0.00 0.00 0.00 5.28
2416 2448 0.106419 TGGGAGAAAACTTGCGGGTT 60.106 50.000 0.00 0.00 0.00 4.11
2417 2449 1.143277 TGGGAGAAAACTTGCGGGTTA 59.857 47.619 0.00 0.00 0.00 2.85
2418 2450 1.538512 GGGAGAAAACTTGCGGGTTAC 59.461 52.381 0.00 0.00 0.00 2.50
2419 2451 1.538512 GGAGAAAACTTGCGGGTTACC 59.461 52.381 0.00 0.00 0.00 2.85
2432 2464 2.353323 GGGTTACCGTTGAAGATGTCC 58.647 52.381 0.00 0.00 0.00 4.02
2433 2465 2.027469 GGGTTACCGTTGAAGATGTCCT 60.027 50.000 0.00 0.00 0.00 3.85
2434 2466 3.196254 GGGTTACCGTTGAAGATGTCCTA 59.804 47.826 0.00 0.00 0.00 2.94
2435 2467 4.322953 GGGTTACCGTTGAAGATGTCCTAA 60.323 45.833 0.00 0.00 0.00 2.69
2436 2468 5.425630 GGTTACCGTTGAAGATGTCCTAAT 58.574 41.667 0.00 0.00 0.00 1.73
2437 2469 5.878669 GGTTACCGTTGAAGATGTCCTAATT 59.121 40.000 0.00 0.00 0.00 1.40
2438 2470 7.043565 GGTTACCGTTGAAGATGTCCTAATTA 58.956 38.462 0.00 0.00 0.00 1.40
2439 2471 7.224167 GGTTACCGTTGAAGATGTCCTAATTAG 59.776 40.741 5.43 5.43 0.00 1.73
2440 2472 5.671493 ACCGTTGAAGATGTCCTAATTAGG 58.329 41.667 23.54 23.54 45.02 2.69
2452 2484 4.625607 CCTAATTAGGATCCCCACACTC 57.374 50.000 24.99 0.00 46.63 3.51
2453 2485 4.235372 CCTAATTAGGATCCCCACACTCT 58.765 47.826 24.99 0.00 46.63 3.24
2454 2486 4.660771 CCTAATTAGGATCCCCACACTCTT 59.339 45.833 24.99 0.00 46.63 2.85
2479 2511 2.338500 CACGCTAGTGTTCTTCCTTCC 58.662 52.381 6.11 0.00 43.15 3.46
2486 2518 0.036732 TGTTCTTCCTTCCGCAGCAT 59.963 50.000 0.00 0.00 0.00 3.79
2490 2522 1.009829 CTTCCTTCCGCAGCATGTAC 58.990 55.000 0.00 0.00 39.31 2.90
2497 2529 0.095245 CCGCAGCATGTACGACAAAG 59.905 55.000 5.85 0.00 39.31 2.77
2502 2534 3.678072 GCAGCATGTACGACAAAGTAAGA 59.322 43.478 0.00 0.00 39.31 2.10
2580 2612 8.691661 TGTAGCTTAGAAAAATTGGTCTCTTT 57.308 30.769 0.00 0.00 0.00 2.52
2609 2641 4.442375 ACTAGAATGAGACACTTGACCG 57.558 45.455 0.00 0.00 0.00 4.79
2612 2644 3.654414 AGAATGAGACACTTGACCGAAC 58.346 45.455 0.00 0.00 0.00 3.95
2615 2647 3.469008 TGAGACACTTGACCGAACATT 57.531 42.857 0.00 0.00 0.00 2.71
2739 2787 9.659830 AACTGAACTGTCAAAACGTTTAATATC 57.340 29.630 15.03 7.40 31.88 1.63
2741 2789 9.878599 CTGAACTGTCAAAACGTTTAATATCTT 57.121 29.630 15.03 2.49 31.88 2.40
2745 2793 8.504005 ACTGTCAAAACGTTTAATATCTTGGAG 58.496 33.333 15.03 8.89 0.00 3.86
2787 3836 9.224267 CTACTCTTTCATCTCCAAAAAGAATGA 57.776 33.333 0.00 0.00 38.25 2.57
2923 4155 7.749377 TCTTTTGAAAGATGGAGGGAGTATA 57.251 36.000 2.16 0.00 39.95 1.47
2959 4191 6.395426 TTGGATTGCAACCATCTCAATATC 57.605 37.500 17.71 1.47 37.26 1.63
2962 4194 6.208007 TGGATTGCAACCATCTCAATATCATC 59.792 38.462 14.38 0.00 31.30 2.92
3004 4247 3.254060 CACACGAATAGCACTGCTAGTT 58.746 45.455 15.84 10.19 44.66 2.24
3005 4248 3.679980 CACACGAATAGCACTGCTAGTTT 59.320 43.478 15.84 6.74 44.66 2.66
3006 4249 4.862574 CACACGAATAGCACTGCTAGTTTA 59.137 41.667 15.84 0.00 44.66 2.01
3007 4250 5.347635 CACACGAATAGCACTGCTAGTTTAA 59.652 40.000 15.84 0.00 44.66 1.52
3008 4251 6.036083 CACACGAATAGCACTGCTAGTTTAAT 59.964 38.462 15.84 0.00 44.66 1.40
3009 4252 6.594159 ACACGAATAGCACTGCTAGTTTAATT 59.406 34.615 15.84 5.65 44.66 1.40
3010 4253 7.119262 ACACGAATAGCACTGCTAGTTTAATTT 59.881 33.333 15.84 4.03 44.66 1.82
3032 4275 3.447950 AGAGGTAAATACACCGGGAGTT 58.552 45.455 6.32 0.00 43.84 3.01
3206 4450 1.376683 GTAAGCCCACCACGCATGA 60.377 57.895 0.00 0.00 0.00 3.07
3358 4604 1.067635 TCGGTTACAAACTAGGGACGC 60.068 52.381 0.00 0.00 0.00 5.19
3481 4729 4.344359 TTTTGCAAGAAATGTAACCCCC 57.656 40.909 0.00 0.00 33.04 5.40
3516 4764 1.557099 TGGCTCGACTATGTGACCTT 58.443 50.000 0.00 0.00 0.00 3.50
4278 5533 1.996898 GACGTGTTGTGTTGTCAGTGA 59.003 47.619 0.00 0.00 0.00 3.41
4431 5686 8.574737 CATAGACATGAATGATCAGTAGTCTGA 58.425 37.037 24.02 14.32 43.20 3.27
4659 5914 4.502645 TGTGATCGTATATGAACGCTTGTG 59.497 41.667 14.55 0.00 42.56 3.33
4663 5918 3.680458 TCGTATATGAACGCTTGTGCAAA 59.320 39.130 0.00 0.00 42.56 3.68
4673 5928 3.243501 ACGCTTGTGCAAAGTTTGATGAT 60.244 39.130 19.82 0.00 39.64 2.45
4714 5969 0.453793 TTTGTGCACCAAACTGACCG 59.546 50.000 15.69 0.00 38.12 4.79
4884 6139 7.549839 ACCATGACATGTTATCCAAATTTCTG 58.450 34.615 14.26 0.00 0.00 3.02
4963 6218 2.410053 GCACTAGAAACAGACGAGCTTG 59.590 50.000 0.00 0.00 0.00 4.01
5003 6258 3.945434 CATCGCCATGGTGCTCGC 61.945 66.667 20.97 0.00 0.00 5.03
5031 6286 1.000993 TCTCCACAGGCTCTCCTCC 59.999 63.158 0.00 0.00 41.93 4.30
5046 6301 2.525629 TCCAAGACCGAGGGCACA 60.526 61.111 0.00 0.00 0.00 4.57
5055 6310 3.005539 GAGGGCACAGCAGGGAGA 61.006 66.667 0.00 0.00 0.00 3.71
5059 6314 2.350514 GCACAGCAGGGAGAAGCT 59.649 61.111 0.00 0.00 42.94 3.74
5063 6318 3.164479 AGCAGGGAGAAGCTGCAA 58.836 55.556 0.00 0.00 45.58 4.08
5127 6382 2.420568 GCAGATCACGGGGTCGGTA 61.421 63.158 0.00 0.00 41.39 4.02
5136 6391 0.248621 CGGGGTCGGTATTGTACGTC 60.249 60.000 0.00 0.00 0.00 4.34
5169 6424 4.760047 GCGTGCATGGACTCCGGT 62.760 66.667 15.82 0.00 0.00 5.28
5235 6490 1.219664 CCTATGGGTCGTTCGGCAA 59.780 57.895 0.00 0.00 0.00 4.52
5294 6549 2.317040 AGGGTTCGACGATATGGTGAT 58.683 47.619 0.00 0.00 0.00 3.06
5304 6559 0.702356 ATATGGTGATGGGCAGGGGT 60.702 55.000 0.00 0.00 0.00 4.95
5517 6772 0.038310 TCGAAGGTGAGCTGGAGAGA 59.962 55.000 0.00 0.00 0.00 3.10
5528 6783 4.279169 TGAGCTGGAGAGAAACAAAATTGG 59.721 41.667 0.00 0.00 0.00 3.16
5631 6892 0.607489 CCTGCTTTGAGAGTGGTGGG 60.607 60.000 0.00 0.00 0.00 4.61
5640 6901 2.378886 TGAGAGTGGTGGGTCTTCTCTA 59.621 50.000 0.00 0.00 35.93 2.43
5641 6902 2.756207 GAGAGTGGTGGGTCTTCTCTAC 59.244 54.545 0.00 0.00 35.93 2.59
5649 6910 1.414550 GGGTCTTCTCTACTGGCCATC 59.585 57.143 5.51 0.00 0.00 3.51
5650 6911 2.111384 GGTCTTCTCTACTGGCCATCA 58.889 52.381 5.51 0.00 0.00 3.07
5653 6914 4.125703 GTCTTCTCTACTGGCCATCAATG 58.874 47.826 5.51 0.00 0.00 2.82
5718 6979 9.405587 GTTTACTTTAATTGTTGCAGCTGAATA 57.594 29.630 20.43 4.58 0.00 1.75
5772 7034 9.754382 CCTGATTTTCATATTTTCCTACAATGG 57.246 33.333 0.00 0.00 0.00 3.16
5784 7046 7.681939 TTTCCTACAATGGTATCTTGTGTTC 57.318 36.000 0.00 0.00 37.41 3.18
5785 7047 5.416083 TCCTACAATGGTATCTTGTGTTCG 58.584 41.667 0.00 0.00 37.41 3.95
5786 7048 5.046878 TCCTACAATGGTATCTTGTGTTCGT 60.047 40.000 0.00 0.00 37.41 3.85
5787 7049 5.063438 CCTACAATGGTATCTTGTGTTCGTG 59.937 44.000 0.00 0.00 37.41 4.35
5789 7051 5.245531 ACAATGGTATCTTGTGTTCGTGAT 58.754 37.500 0.00 0.00 35.57 3.06
5790 7052 5.122239 ACAATGGTATCTTGTGTTCGTGATG 59.878 40.000 0.00 0.00 35.57 3.07
5791 7053 4.265904 TGGTATCTTGTGTTCGTGATGT 57.734 40.909 0.00 0.00 0.00 3.06
5792 7054 4.637276 TGGTATCTTGTGTTCGTGATGTT 58.363 39.130 0.00 0.00 0.00 2.71
5793 7055 4.450757 TGGTATCTTGTGTTCGTGATGTTG 59.549 41.667 0.00 0.00 0.00 3.33
5795 7057 1.601903 TCTTGTGTTCGTGATGTTGGC 59.398 47.619 0.00 0.00 0.00 4.52
5798 7060 0.889186 GTGTTCGTGATGTTGGCCCT 60.889 55.000 0.00 0.00 0.00 5.19
5799 7061 0.687920 TGTTCGTGATGTTGGCCCTA 59.312 50.000 0.00 0.00 0.00 3.53
5800 7062 1.280710 TGTTCGTGATGTTGGCCCTAT 59.719 47.619 0.00 0.00 0.00 2.57
5801 7063 1.670811 GTTCGTGATGTTGGCCCTATG 59.329 52.381 0.00 0.00 0.00 2.23
5802 7064 0.908910 TCGTGATGTTGGCCCTATGT 59.091 50.000 0.00 0.00 0.00 2.29
5845 7108 0.879090 GAACCGATGACGCCCTTTTT 59.121 50.000 0.00 0.00 38.29 1.94
5890 7153 1.002576 TGCAACGCATGTCTCAAACAG 60.003 47.619 0.00 0.00 42.37 3.16
5894 7157 4.378356 GCAACGCATGTCTCAAACAGAATA 60.378 41.667 0.00 0.00 42.37 1.75
6020 7300 4.022329 AGTTTGTATTACCAAGCCAACTGC 60.022 41.667 0.00 0.00 41.71 4.40
6056 7351 2.812358 TATGCCAACGATATGAGCGT 57.188 45.000 0.00 0.00 44.94 5.07
6070 7365 1.336056 TGAGCGTGCGTGTAACACATA 60.336 47.619 0.00 0.00 37.93 2.29
6242 7537 4.009002 TGATGCTTCGTTCAATTGATGGA 58.991 39.130 9.40 6.90 0.00 3.41
6472 7768 2.099405 CCAAATAACCCGACAAGGCAT 58.901 47.619 0.00 0.00 39.21 4.40
6593 7895 6.662865 TGAACTTTGCATTCCCATTTAGAA 57.337 33.333 0.00 0.00 0.00 2.10
6598 7900 7.452562 ACTTTGCATTCCCATTTAGAAATGTT 58.547 30.769 12.71 0.00 43.24 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.687210 CACCTTTTATATCCATTGAATGTGATG 57.313 33.333 15.04 0.00 0.00 3.07
8 9 9.565090 CTCTCATTCACCTTTTATATCCATTGA 57.435 33.333 0.00 0.00 0.00 2.57
9 10 8.295288 GCTCTCATTCACCTTTTATATCCATTG 58.705 37.037 0.00 0.00 0.00 2.82
10 11 8.000709 TGCTCTCATTCACCTTTTATATCCATT 58.999 33.333 0.00 0.00 0.00 3.16
11 12 7.520798 TGCTCTCATTCACCTTTTATATCCAT 58.479 34.615 0.00 0.00 0.00 3.41
12 13 6.899089 TGCTCTCATTCACCTTTTATATCCA 58.101 36.000 0.00 0.00 0.00 3.41
13 14 7.807977 TTGCTCTCATTCACCTTTTATATCC 57.192 36.000 0.00 0.00 0.00 2.59
14 15 8.897752 AGTTTGCTCTCATTCACCTTTTATATC 58.102 33.333 0.00 0.00 0.00 1.63
15 16 8.814038 AGTTTGCTCTCATTCACCTTTTATAT 57.186 30.769 0.00 0.00 0.00 0.86
16 17 9.733556 TTAGTTTGCTCTCATTCACCTTTTATA 57.266 29.630 0.00 0.00 0.00 0.98
17 18 8.635765 TTAGTTTGCTCTCATTCACCTTTTAT 57.364 30.769 0.00 0.00 0.00 1.40
18 19 8.458573 TTTAGTTTGCTCTCATTCACCTTTTA 57.541 30.769 0.00 0.00 0.00 1.52
19 20 6.959639 TTAGTTTGCTCTCATTCACCTTTT 57.040 33.333 0.00 0.00 0.00 2.27
20 21 6.959639 TTTAGTTTGCTCTCATTCACCTTT 57.040 33.333 0.00 0.00 0.00 3.11
21 22 6.944862 AGATTTAGTTTGCTCTCATTCACCTT 59.055 34.615 0.00 0.00 0.00 3.50
22 23 6.479884 AGATTTAGTTTGCTCTCATTCACCT 58.520 36.000 0.00 0.00 0.00 4.00
23 24 6.372659 TGAGATTTAGTTTGCTCTCATTCACC 59.627 38.462 0.00 0.00 39.25 4.02
24 25 7.369803 TGAGATTTAGTTTGCTCTCATTCAC 57.630 36.000 0.00 0.00 39.25 3.18
29 30 8.298729 TCTAGATGAGATTTAGTTTGCTCTCA 57.701 34.615 3.81 3.81 45.81 3.27
57 58 9.788960 CTTTTCTTTTACAGTTTTGCTAGAACT 57.211 29.630 0.00 0.00 37.82 3.01
58 59 9.020813 CCTTTTCTTTTACAGTTTTGCTAGAAC 57.979 33.333 0.00 0.00 0.00 3.01
59 60 8.962679 TCCTTTTCTTTTACAGTTTTGCTAGAA 58.037 29.630 0.00 0.00 0.00 2.10
60 61 8.514330 TCCTTTTCTTTTACAGTTTTGCTAGA 57.486 30.769 0.00 0.00 0.00 2.43
63 64 9.750125 CTTATCCTTTTCTTTTACAGTTTTGCT 57.250 29.630 0.00 0.00 0.00 3.91
64 65 8.978539 CCTTATCCTTTTCTTTTACAGTTTTGC 58.021 33.333 0.00 0.00 0.00 3.68
65 66 8.978539 GCCTTATCCTTTTCTTTTACAGTTTTG 58.021 33.333 0.00 0.00 0.00 2.44
66 67 8.700973 TGCCTTATCCTTTTCTTTTACAGTTTT 58.299 29.630 0.00 0.00 0.00 2.43
67 68 8.245195 TGCCTTATCCTTTTCTTTTACAGTTT 57.755 30.769 0.00 0.00 0.00 2.66
68 69 7.833285 TGCCTTATCCTTTTCTTTTACAGTT 57.167 32.000 0.00 0.00 0.00 3.16
69 70 7.833285 TTGCCTTATCCTTTTCTTTTACAGT 57.167 32.000 0.00 0.00 0.00 3.55
70 71 7.814587 CCTTTGCCTTATCCTTTTCTTTTACAG 59.185 37.037 0.00 0.00 0.00 2.74
71 72 7.666623 CCTTTGCCTTATCCTTTTCTTTTACA 58.333 34.615 0.00 0.00 0.00 2.41
72 73 6.590292 GCCTTTGCCTTATCCTTTTCTTTTAC 59.410 38.462 0.00 0.00 0.00 2.01
73 74 6.268847 TGCCTTTGCCTTATCCTTTTCTTTTA 59.731 34.615 0.00 0.00 36.33 1.52
74 75 5.071653 TGCCTTTGCCTTATCCTTTTCTTTT 59.928 36.000 0.00 0.00 36.33 2.27
75 76 4.592778 TGCCTTTGCCTTATCCTTTTCTTT 59.407 37.500 0.00 0.00 36.33 2.52
76 77 4.021104 GTGCCTTTGCCTTATCCTTTTCTT 60.021 41.667 0.00 0.00 36.33 2.52
77 78 3.511540 GTGCCTTTGCCTTATCCTTTTCT 59.488 43.478 0.00 0.00 36.33 2.52
78 79 3.673323 CGTGCCTTTGCCTTATCCTTTTC 60.673 47.826 0.00 0.00 36.33 2.29
79 80 2.231235 CGTGCCTTTGCCTTATCCTTTT 59.769 45.455 0.00 0.00 36.33 2.27
80 81 1.818674 CGTGCCTTTGCCTTATCCTTT 59.181 47.619 0.00 0.00 36.33 3.11
81 82 1.463674 CGTGCCTTTGCCTTATCCTT 58.536 50.000 0.00 0.00 36.33 3.36
82 83 0.394352 CCGTGCCTTTGCCTTATCCT 60.394 55.000 0.00 0.00 36.33 3.24
83 84 2.004808 GCCGTGCCTTTGCCTTATCC 62.005 60.000 0.00 0.00 36.33 2.59
84 85 1.312371 TGCCGTGCCTTTGCCTTATC 61.312 55.000 0.00 0.00 36.33 1.75
85 86 1.304052 TGCCGTGCCTTTGCCTTAT 60.304 52.632 0.00 0.00 36.33 1.73
86 87 2.114199 TGCCGTGCCTTTGCCTTA 59.886 55.556 0.00 0.00 36.33 2.69
87 88 3.605664 GTGCCGTGCCTTTGCCTT 61.606 61.111 0.00 0.00 36.33 4.35
95 96 4.830765 TAGATGCCGTGCCGTGCC 62.831 66.667 5.92 0.00 0.00 5.01
96 97 1.714899 AAATAGATGCCGTGCCGTGC 61.715 55.000 0.00 0.00 0.00 5.34
97 98 0.027979 CAAATAGATGCCGTGCCGTG 59.972 55.000 0.00 0.00 0.00 4.94
98 99 0.392461 ACAAATAGATGCCGTGCCGT 60.392 50.000 0.00 0.00 0.00 5.68
99 100 0.304705 GACAAATAGATGCCGTGCCG 59.695 55.000 0.00 0.00 0.00 5.69
100 101 0.663153 GGACAAATAGATGCCGTGCC 59.337 55.000 0.00 0.00 0.00 5.01
101 102 0.663153 GGGACAAATAGATGCCGTGC 59.337 55.000 0.00 0.00 0.00 5.34
102 103 2.332063 AGGGACAAATAGATGCCGTG 57.668 50.000 0.00 0.00 0.00 4.94
103 104 2.505819 AGAAGGGACAAATAGATGCCGT 59.494 45.455 0.00 0.00 0.00 5.68
104 105 3.199880 AGAAGGGACAAATAGATGCCG 57.800 47.619 0.00 0.00 0.00 5.69
105 106 4.339530 GGAAAGAAGGGACAAATAGATGCC 59.660 45.833 0.00 0.00 0.00 4.40
106 107 5.196695 AGGAAAGAAGGGACAAATAGATGC 58.803 41.667 0.00 0.00 0.00 3.91
107 108 7.115414 AGAAGGAAAGAAGGGACAAATAGATG 58.885 38.462 0.00 0.00 0.00 2.90
108 109 7.277405 AGAAGGAAAGAAGGGACAAATAGAT 57.723 36.000 0.00 0.00 0.00 1.98
109 110 6.704056 AGAAGGAAAGAAGGGACAAATAGA 57.296 37.500 0.00 0.00 0.00 1.98
110 111 7.094162 GGAAAGAAGGAAAGAAGGGACAAATAG 60.094 40.741 0.00 0.00 0.00 1.73
111 112 6.719829 GGAAAGAAGGAAAGAAGGGACAAATA 59.280 38.462 0.00 0.00 0.00 1.40
112 113 5.540337 GGAAAGAAGGAAAGAAGGGACAAAT 59.460 40.000 0.00 0.00 0.00 2.32
113 114 4.893524 GGAAAGAAGGAAAGAAGGGACAAA 59.106 41.667 0.00 0.00 0.00 2.83
114 115 4.079443 TGGAAAGAAGGAAAGAAGGGACAA 60.079 41.667 0.00 0.00 0.00 3.18
115 116 3.461831 TGGAAAGAAGGAAAGAAGGGACA 59.538 43.478 0.00 0.00 0.00 4.02
116 117 4.075682 CTGGAAAGAAGGAAAGAAGGGAC 58.924 47.826 0.00 0.00 0.00 4.46
117 118 3.722101 ACTGGAAAGAAGGAAAGAAGGGA 59.278 43.478 0.00 0.00 0.00 4.20
118 119 4.075682 GACTGGAAAGAAGGAAAGAAGGG 58.924 47.826 0.00 0.00 0.00 3.95
119 120 4.759183 CAGACTGGAAAGAAGGAAAGAAGG 59.241 45.833 0.00 0.00 0.00 3.46
120 121 5.372373 ACAGACTGGAAAGAAGGAAAGAAG 58.628 41.667 7.51 0.00 0.00 2.85
121 122 5.373812 ACAGACTGGAAAGAAGGAAAGAA 57.626 39.130 7.51 0.00 0.00 2.52
183 184 5.745227 CCATTTCTCACCCACTGTATTACT 58.255 41.667 0.00 0.00 0.00 2.24
184 185 4.335594 GCCATTTCTCACCCACTGTATTAC 59.664 45.833 0.00 0.00 0.00 1.89
203 204 0.176680 CCGTCTCTGTTAGCAGCCAT 59.823 55.000 0.97 0.00 42.29 4.40
205 206 0.461961 ATCCGTCTCTGTTAGCAGCC 59.538 55.000 0.97 0.00 42.29 4.85
215 216 0.393944 TCTACACCGCATCCGTCTCT 60.394 55.000 0.00 0.00 0.00 3.10
250 251 1.268285 TGATCGCAACAACCACGTTTG 60.268 47.619 0.00 0.00 0.00 2.93
271 272 1.139058 CTATAGGACCCAGCACCACAC 59.861 57.143 0.00 0.00 0.00 3.82
286 287 1.001597 GGGTCACGCGTCCTTCTATAG 60.002 57.143 9.86 0.00 0.00 1.31
327 328 2.289631 CGGCTGGCTCATAATCATGGTA 60.290 50.000 0.00 0.00 32.61 3.25
386 387 2.279517 GAGGCCCGCGTCTATGTG 60.280 66.667 4.92 0.00 0.00 3.21
439 443 1.755393 GCTGTATAGGTGGGACGGGG 61.755 65.000 0.00 0.00 0.00 5.73
441 445 1.048601 ATGCTGTATAGGTGGGACGG 58.951 55.000 0.00 0.00 0.00 4.79
459 465 1.415289 TCATCAGCGAGCTCCAATCAT 59.585 47.619 8.47 0.00 0.00 2.45
466 472 1.339610 AGTATGGTCATCAGCGAGCTC 59.660 52.381 2.73 2.73 34.46 4.09
467 473 1.068281 CAGTATGGTCATCAGCGAGCT 59.932 52.381 0.00 0.00 34.46 4.09
476 482 1.630369 ACAGCCACACAGTATGGTCAT 59.370 47.619 0.00 0.00 43.62 3.06
477 483 1.001974 GACAGCCACACAGTATGGTCA 59.998 52.381 0.00 0.00 43.62 4.02
478 484 1.276421 AGACAGCCACACAGTATGGTC 59.724 52.381 0.00 0.00 43.62 4.02
479 485 1.352083 AGACAGCCACACAGTATGGT 58.648 50.000 0.00 0.00 43.62 3.55
480 486 3.262420 GTTAGACAGCCACACAGTATGG 58.738 50.000 0.00 0.00 43.62 2.74
481 487 3.262420 GGTTAGACAGCCACACAGTATG 58.738 50.000 0.00 0.00 46.00 2.39
482 488 2.903784 TGGTTAGACAGCCACACAGTAT 59.096 45.455 0.00 0.00 28.61 2.12
483 489 2.321719 TGGTTAGACAGCCACACAGTA 58.678 47.619 0.00 0.00 28.61 2.74
484 490 1.128200 TGGTTAGACAGCCACACAGT 58.872 50.000 0.00 0.00 28.61 3.55
485 491 2.350522 GATGGTTAGACAGCCACACAG 58.649 52.381 0.00 0.00 37.94 3.66
486 492 1.003118 GGATGGTTAGACAGCCACACA 59.997 52.381 0.00 0.00 45.95 3.72
487 493 1.739067 GGATGGTTAGACAGCCACAC 58.261 55.000 0.00 0.00 45.95 3.82
571 578 8.364142 GGAGTATCTATACAGAAAGAATGCAGT 58.636 37.037 0.00 0.00 35.74 4.40
610 617 9.401058 CTCTTCTCTTCTCTTCTCTATCTTCTT 57.599 37.037 0.00 0.00 0.00 2.52
611 618 8.772250 TCTCTTCTCTTCTCTTCTCTATCTTCT 58.228 37.037 0.00 0.00 0.00 2.85
612 619 8.964476 TCTCTTCTCTTCTCTTCTCTATCTTC 57.036 38.462 0.00 0.00 0.00 2.87
613 620 9.753674 TTTCTCTTCTCTTCTCTTCTCTATCTT 57.246 33.333 0.00 0.00 0.00 2.40
614 621 9.753674 TTTTCTCTTCTCTTCTCTTCTCTATCT 57.246 33.333 0.00 0.00 0.00 1.98
650 657 2.750888 GGTCTTTAGCAAGCGCCGG 61.751 63.158 2.29 0.00 39.83 6.13
724 734 0.463654 TGATGCATCTTGGGCGGTAC 60.464 55.000 26.32 0.00 0.00 3.34
728 738 1.537348 CCATTTGATGCATCTTGGGCG 60.537 52.381 26.32 10.54 0.00 6.13
737 747 2.349672 CCCGCCACCATTTGATGCA 61.350 57.895 0.00 0.00 0.00 3.96
786 796 1.478510 CAGCGGGAACATCAGTACTCT 59.521 52.381 0.00 0.00 0.00 3.24
1089 1117 0.681564 AGAGGCTGGAGTCGACGAAT 60.682 55.000 10.46 0.00 0.00 3.34
1093 1121 1.137825 CGAAGAGGCTGGAGTCGAC 59.862 63.158 7.70 7.70 33.63 4.20
1189 1217 1.353694 GAGCATGGGATAGGCAAGGAT 59.646 52.381 0.00 0.00 38.89 3.24
1246 1274 9.036980 AGAATTGTGTTTAGTACAGACTAGGAT 57.963 33.333 0.00 0.00 39.36 3.24
1252 1280 8.870879 GTCCATAGAATTGTGTTTAGTACAGAC 58.129 37.037 0.00 0.00 37.45 3.51
1255 1283 9.161629 CATGTCCATAGAATTGTGTTTAGTACA 57.838 33.333 0.00 0.00 0.00 2.90
1298 1326 2.093606 TGTTCACCAAGGTACGTGTGAA 60.094 45.455 14.13 14.13 36.36 3.18
1394 1423 8.542926 TCTTTTTGATCAGACCTCTATGAATGA 58.457 33.333 0.00 0.00 0.00 2.57
1423 1452 7.042791 CGAACAATAACCTGTTGAAGCATTTTT 60.043 33.333 0.00 0.00 39.63 1.94
1426 1455 5.240623 TCGAACAATAACCTGTTGAAGCATT 59.759 36.000 0.00 0.00 39.63 3.56
1448 1477 2.404215 TCGACTCTTCAAAAGGCTTCG 58.596 47.619 0.00 0.00 0.00 3.79
1472 1501 1.158434 GACGTCCGGGCAAAAATACA 58.842 50.000 6.96 0.00 0.00 2.29
1492 1521 4.974368 TTTTGTGATGAAACGAAGTGGT 57.026 36.364 0.00 0.00 45.00 4.16
1493 1522 6.344936 CGAAATTTTGTGATGAAACGAAGTGG 60.345 38.462 0.00 0.00 45.00 4.00
1496 1525 5.172951 TGCGAAATTTTGTGATGAAACGAAG 59.827 36.000 7.27 0.00 0.00 3.79
1517 1548 1.369209 CAGGTTTCAAGTGCGTGCG 60.369 57.895 0.00 0.00 0.00 5.34
1606 1637 0.907486 TGAGCTCACATCCTTCCTGG 59.093 55.000 13.74 0.00 37.10 4.45
1609 1640 3.118482 TGATCTTGAGCTCACATCCTTCC 60.118 47.826 18.03 1.32 0.00 3.46
1661 1692 6.487299 ACTCTACCATAAATGAAGGGAGAC 57.513 41.667 0.00 0.00 37.47 3.36
1670 1701 7.667557 TCGGAAGGAATACTCTACCATAAATG 58.332 38.462 0.00 0.00 0.00 2.32
1676 1707 4.202223 GCATTCGGAAGGAATACTCTACCA 60.202 45.833 6.57 0.00 43.52 3.25
1678 1709 5.203060 AGCATTCGGAAGGAATACTCTAC 57.797 43.478 6.57 0.00 43.52 2.59
1827 1858 7.148755 CCGATGATTGAAAAACCTCACAAAATC 60.149 37.037 0.00 0.00 0.00 2.17
1836 1867 3.089284 GGGTCCGATGATTGAAAAACCT 58.911 45.455 0.00 0.00 0.00 3.50
1838 1869 3.366985 GGTGGGTCCGATGATTGAAAAAC 60.367 47.826 0.00 0.00 0.00 2.43
2073 2105 1.755380 GTGGTACTGTGGTAGGCTAGG 59.245 57.143 0.00 0.00 0.00 3.02
2074 2106 2.736347 AGTGGTACTGTGGTAGGCTAG 58.264 52.381 0.00 0.00 0.00 3.42
2075 2107 2.913603 AGTGGTACTGTGGTAGGCTA 57.086 50.000 0.00 0.00 0.00 3.93
2076 2108 2.042706 ACTAGTGGTACTGTGGTAGGCT 59.957 50.000 0.00 0.00 0.00 4.58
2077 2109 2.426381 GACTAGTGGTACTGTGGTAGGC 59.574 54.545 0.00 0.00 0.00 3.93
2078 2110 3.695060 CAGACTAGTGGTACTGTGGTAGG 59.305 52.174 0.00 0.00 0.00 3.18
2079 2111 3.128938 GCAGACTAGTGGTACTGTGGTAG 59.871 52.174 0.00 0.00 33.57 3.18
2080 2112 3.087031 GCAGACTAGTGGTACTGTGGTA 58.913 50.000 0.00 0.00 33.57 3.25
2081 2113 1.893801 GCAGACTAGTGGTACTGTGGT 59.106 52.381 0.00 0.00 33.57 4.16
2082 2114 1.204941 GGCAGACTAGTGGTACTGTGG 59.795 57.143 0.00 0.00 33.57 4.17
2083 2115 1.204941 GGGCAGACTAGTGGTACTGTG 59.795 57.143 0.00 0.00 33.57 3.66
2084 2116 1.558233 GGGCAGACTAGTGGTACTGT 58.442 55.000 0.00 0.00 33.57 3.55
2085 2117 0.456221 CGGGCAGACTAGTGGTACTG 59.544 60.000 0.00 2.12 0.00 2.74
2100 2132 0.165295 GTTACAAAGCTCGTTCGGGC 59.835 55.000 9.14 9.14 0.00 6.13
2221 2253 4.210724 TGGGAGTTCCGACGAAATTTAT 57.789 40.909 0.00 0.00 38.76 1.40
2229 2261 1.644786 GGCATTTGGGAGTTCCGACG 61.645 60.000 0.00 0.00 38.76 5.12
2306 2338 6.239008 CCCGCATACAATACCATCATCTTTTT 60.239 38.462 0.00 0.00 0.00 1.94
2307 2339 5.241506 CCCGCATACAATACCATCATCTTTT 59.758 40.000 0.00 0.00 0.00 2.27
2308 2340 4.761739 CCCGCATACAATACCATCATCTTT 59.238 41.667 0.00 0.00 0.00 2.52
2309 2341 4.326826 CCCGCATACAATACCATCATCTT 58.673 43.478 0.00 0.00 0.00 2.40
2310 2342 3.869912 GCCCGCATACAATACCATCATCT 60.870 47.826 0.00 0.00 0.00 2.90
2311 2343 2.420022 GCCCGCATACAATACCATCATC 59.580 50.000 0.00 0.00 0.00 2.92
2312 2344 2.224744 TGCCCGCATACAATACCATCAT 60.225 45.455 0.00 0.00 0.00 2.45
2313 2345 1.141858 TGCCCGCATACAATACCATCA 59.858 47.619 0.00 0.00 0.00 3.07
2314 2346 1.806542 CTGCCCGCATACAATACCATC 59.193 52.381 0.00 0.00 0.00 3.51
2315 2347 1.896220 CTGCCCGCATACAATACCAT 58.104 50.000 0.00 0.00 0.00 3.55
2316 2348 0.817634 GCTGCCCGCATACAATACCA 60.818 55.000 0.00 0.00 38.92 3.25
2317 2349 1.841663 CGCTGCCCGCATACAATACC 61.842 60.000 0.00 0.00 39.08 2.73
2318 2350 1.157870 ACGCTGCCCGCATACAATAC 61.158 55.000 0.00 0.00 41.76 1.89
2319 2351 0.462937 AACGCTGCCCGCATACAATA 60.463 50.000 0.00 0.00 41.76 1.90
2320 2352 1.748879 AACGCTGCCCGCATACAAT 60.749 52.632 0.00 0.00 41.76 2.71
2321 2353 2.359354 AACGCTGCCCGCATACAA 60.359 55.556 0.00 0.00 41.76 2.41
2322 2354 2.508586 TACAACGCTGCCCGCATACA 62.509 55.000 0.00 0.00 41.76 2.29
2323 2355 1.157870 ATACAACGCTGCCCGCATAC 61.158 55.000 0.00 0.00 41.76 2.39
2324 2356 1.145156 ATACAACGCTGCCCGCATA 59.855 52.632 0.00 0.00 41.76 3.14
2325 2357 2.124736 ATACAACGCTGCCCGCAT 60.125 55.556 0.00 0.00 41.76 4.73
2326 2358 3.124270 CATACAACGCTGCCCGCA 61.124 61.111 0.00 0.00 41.76 5.69
2327 2359 3.876198 CCATACAACGCTGCCCGC 61.876 66.667 0.00 0.00 41.76 6.13
2328 2360 2.435938 ACCATACAACGCTGCCCG 60.436 61.111 0.00 0.00 44.21 6.13
2329 2361 2.406616 CCACCATACAACGCTGCCC 61.407 63.158 0.00 0.00 0.00 5.36
2330 2362 3.051392 GCCACCATACAACGCTGCC 62.051 63.158 0.00 0.00 0.00 4.85
2331 2363 1.586154 AAGCCACCATACAACGCTGC 61.586 55.000 0.00 0.00 0.00 5.25
2332 2364 0.881118 AAAGCCACCATACAACGCTG 59.119 50.000 0.00 0.00 0.00 5.18
2333 2365 1.165270 GAAAGCCACCATACAACGCT 58.835 50.000 0.00 0.00 0.00 5.07
2334 2366 0.878416 TGAAAGCCACCATACAACGC 59.122 50.000 0.00 0.00 0.00 4.84
2335 2367 2.151202 ACTGAAAGCCACCATACAACG 58.849 47.619 0.00 0.00 37.60 4.10
2336 2368 4.335594 GGATACTGAAAGCCACCATACAAC 59.664 45.833 0.00 0.00 37.60 3.32
2337 2369 4.523083 GGATACTGAAAGCCACCATACAA 58.477 43.478 0.00 0.00 37.60 2.41
2338 2370 3.431626 CGGATACTGAAAGCCACCATACA 60.432 47.826 0.00 0.00 37.60 2.29
2339 2371 3.131396 CGGATACTGAAAGCCACCATAC 58.869 50.000 0.00 0.00 37.60 2.39
2340 2372 2.769663 ACGGATACTGAAAGCCACCATA 59.230 45.455 0.00 0.00 37.60 2.74
2341 2373 1.559682 ACGGATACTGAAAGCCACCAT 59.440 47.619 0.00 0.00 37.60 3.55
2342 2374 0.981183 ACGGATACTGAAAGCCACCA 59.019 50.000 0.00 0.00 37.60 4.17
2343 2375 1.338769 ACACGGATACTGAAAGCCACC 60.339 52.381 0.00 0.00 37.60 4.61
2344 2376 2.000447 GACACGGATACTGAAAGCCAC 59.000 52.381 0.00 0.00 37.60 5.01
2345 2377 1.066430 GGACACGGATACTGAAAGCCA 60.066 52.381 0.00 0.00 37.60 4.75
2346 2378 1.066430 TGGACACGGATACTGAAAGCC 60.066 52.381 0.00 0.00 37.60 4.35
2347 2379 2.000447 GTGGACACGGATACTGAAAGC 59.000 52.381 0.00 0.00 37.60 3.51
2360 2392 0.391263 GGGGATCAGTTCGTGGACAC 60.391 60.000 0.00 0.00 0.00 3.67
2361 2393 0.544357 AGGGGATCAGTTCGTGGACA 60.544 55.000 0.00 0.00 0.00 4.02
2362 2394 0.613777 AAGGGGATCAGTTCGTGGAC 59.386 55.000 0.00 0.00 0.00 4.02
2363 2395 0.613260 CAAGGGGATCAGTTCGTGGA 59.387 55.000 0.00 0.00 0.00 4.02
2364 2396 0.324943 ACAAGGGGATCAGTTCGTGG 59.675 55.000 0.00 0.00 0.00 4.94
2365 2397 1.676014 GGACAAGGGGATCAGTTCGTG 60.676 57.143 0.00 0.00 0.00 4.35
2366 2398 0.613777 GGACAAGGGGATCAGTTCGT 59.386 55.000 0.00 0.00 0.00 3.85
2367 2399 0.460284 CGGACAAGGGGATCAGTTCG 60.460 60.000 0.00 0.00 0.00 3.95
2368 2400 0.744771 GCGGACAAGGGGATCAGTTC 60.745 60.000 0.00 0.00 0.00 3.01
2369 2401 1.299976 GCGGACAAGGGGATCAGTT 59.700 57.895 0.00 0.00 0.00 3.16
2370 2402 2.990479 GCGGACAAGGGGATCAGT 59.010 61.111 0.00 0.00 0.00 3.41
2371 2403 2.202932 CGCGGACAAGGGGATCAG 60.203 66.667 0.00 0.00 0.00 2.90
2372 2404 3.781307 CCGCGGACAAGGGGATCA 61.781 66.667 24.07 0.00 45.92 2.92
2373 2405 3.467226 TCCGCGGACAAGGGGATC 61.467 66.667 27.28 0.00 46.44 3.36
2385 2417 4.873129 CTCCCACATCCGTCCGCG 62.873 72.222 0.00 0.00 37.95 6.46
2386 2418 2.515996 TTTCTCCCACATCCGTCCGC 62.516 60.000 0.00 0.00 0.00 5.54
2387 2419 0.036765 TTTTCTCCCACATCCGTCCG 60.037 55.000 0.00 0.00 0.00 4.79
2388 2420 1.003233 AGTTTTCTCCCACATCCGTCC 59.997 52.381 0.00 0.00 0.00 4.79
2389 2421 2.474410 AGTTTTCTCCCACATCCGTC 57.526 50.000 0.00 0.00 0.00 4.79
2390 2422 2.504367 CAAGTTTTCTCCCACATCCGT 58.496 47.619 0.00 0.00 0.00 4.69
2391 2423 1.200020 GCAAGTTTTCTCCCACATCCG 59.800 52.381 0.00 0.00 0.00 4.18
2392 2424 1.200020 CGCAAGTTTTCTCCCACATCC 59.800 52.381 0.00 0.00 0.00 3.51
2393 2425 1.200020 CCGCAAGTTTTCTCCCACATC 59.800 52.381 0.00 0.00 0.00 3.06
2394 2426 1.247567 CCGCAAGTTTTCTCCCACAT 58.752 50.000 0.00 0.00 0.00 3.21
2395 2427 0.821711 CCCGCAAGTTTTCTCCCACA 60.822 55.000 0.00 0.00 0.00 4.17
2396 2428 0.822121 ACCCGCAAGTTTTCTCCCAC 60.822 55.000 0.00 0.00 0.00 4.61
2397 2429 0.106419 AACCCGCAAGTTTTCTCCCA 60.106 50.000 0.00 0.00 0.00 4.37
2398 2430 1.538512 GTAACCCGCAAGTTTTCTCCC 59.461 52.381 0.00 0.00 0.00 4.30
2399 2431 1.538512 GGTAACCCGCAAGTTTTCTCC 59.461 52.381 0.00 0.00 0.00 3.71
2400 2432 2.983402 GGTAACCCGCAAGTTTTCTC 57.017 50.000 0.00 0.00 0.00 2.87
2412 2444 2.027469 AGGACATCTTCAACGGTAACCC 60.027 50.000 0.00 0.00 0.00 4.11
2413 2445 3.329929 AGGACATCTTCAACGGTAACC 57.670 47.619 0.00 0.00 0.00 2.85
2414 2446 6.980051 AATTAGGACATCTTCAACGGTAAC 57.020 37.500 0.00 0.00 0.00 2.50
2415 2447 7.270047 CCTAATTAGGACATCTTCAACGGTAA 58.730 38.462 24.99 0.00 46.63 2.85
2416 2448 6.812998 CCTAATTAGGACATCTTCAACGGTA 58.187 40.000 24.99 0.00 46.63 4.02
2417 2449 5.671493 CCTAATTAGGACATCTTCAACGGT 58.329 41.667 24.99 0.00 46.63 4.83
2431 2463 4.235372 AGAGTGTGGGGATCCTAATTAGG 58.765 47.826 23.54 23.54 45.02 2.69
2432 2464 5.604650 AGAAGAGTGTGGGGATCCTAATTAG 59.395 44.000 12.58 5.43 0.00 1.73
2433 2465 5.538877 AGAAGAGTGTGGGGATCCTAATTA 58.461 41.667 12.58 0.00 0.00 1.40
2434 2466 4.375313 AGAAGAGTGTGGGGATCCTAATT 58.625 43.478 12.58 0.00 0.00 1.40
2435 2467 4.014273 AGAAGAGTGTGGGGATCCTAAT 57.986 45.455 12.58 0.00 0.00 1.73
2436 2468 3.491766 AGAAGAGTGTGGGGATCCTAA 57.508 47.619 12.58 0.00 0.00 2.69
2437 2469 4.170053 TGATAGAAGAGTGTGGGGATCCTA 59.830 45.833 12.58 0.00 0.00 2.94
2438 2470 3.051803 TGATAGAAGAGTGTGGGGATCCT 60.052 47.826 12.58 0.00 0.00 3.24
2439 2471 3.070302 GTGATAGAAGAGTGTGGGGATCC 59.930 52.174 1.92 1.92 0.00 3.36
2440 2472 3.243569 CGTGATAGAAGAGTGTGGGGATC 60.244 52.174 0.00 0.00 0.00 3.36
2441 2473 2.695666 CGTGATAGAAGAGTGTGGGGAT 59.304 50.000 0.00 0.00 0.00 3.85
2442 2474 2.100197 CGTGATAGAAGAGTGTGGGGA 58.900 52.381 0.00 0.00 0.00 4.81
2443 2475 1.471676 GCGTGATAGAAGAGTGTGGGG 60.472 57.143 0.00 0.00 0.00 4.96
2444 2476 1.478510 AGCGTGATAGAAGAGTGTGGG 59.521 52.381 0.00 0.00 0.00 4.61
2445 2477 2.949451 AGCGTGATAGAAGAGTGTGG 57.051 50.000 0.00 0.00 0.00 4.17
2446 2478 4.142578 ACACTAGCGTGATAGAAGAGTGTG 60.143 45.833 4.10 0.00 43.18 3.82
2447 2479 4.011023 ACACTAGCGTGATAGAAGAGTGT 58.989 43.478 0.00 0.00 43.97 3.55
2448 2480 4.624336 ACACTAGCGTGATAGAAGAGTG 57.376 45.455 0.00 0.00 43.97 3.51
2449 2481 4.944930 AGAACACTAGCGTGATAGAAGAGT 59.055 41.667 0.00 0.00 43.97 3.24
2450 2482 5.493133 AGAACACTAGCGTGATAGAAGAG 57.507 43.478 0.00 0.00 43.97 2.85
2451 2483 5.163642 GGAAGAACACTAGCGTGATAGAAGA 60.164 44.000 0.00 0.00 43.97 2.87
2452 2484 5.038033 GGAAGAACACTAGCGTGATAGAAG 58.962 45.833 0.00 0.00 43.97 2.85
2453 2485 4.705507 AGGAAGAACACTAGCGTGATAGAA 59.294 41.667 0.00 0.00 43.97 2.10
2454 2486 4.270834 AGGAAGAACACTAGCGTGATAGA 58.729 43.478 0.00 0.00 43.97 1.98
2479 2511 0.790207 ACTTTGTCGTACATGCTGCG 59.210 50.000 0.00 0.00 0.00 5.18
2538 2570 5.008331 AGCTACAGTACAGTTAGCAGTGTA 58.992 41.667 17.65 4.95 37.72 2.90
2637 2669 6.493802 TCCTATTCCGATATTAAGACAGCTGT 59.506 38.462 21.88 21.88 0.00 4.40
2739 2787 3.902881 ACATACTTCCTCTGCTCCAAG 57.097 47.619 0.00 0.00 0.00 3.61
2741 2789 3.982516 AGTACATACTTCCTCTGCTCCA 58.017 45.455 0.00 0.00 31.13 3.86
2745 2793 6.702716 AAGAGTAGTACATACTTCCTCTGC 57.297 41.667 15.92 0.00 45.06 4.26
2984 4227 3.594603 AACTAGCAGTGCTATTCGTGT 57.405 42.857 24.66 15.60 40.54 4.49
3004 4247 8.088463 TCCCGGTGTATTTACCTCTAAATTAA 57.912 34.615 0.00 0.00 38.62 1.40
3005 4248 7.345392 ACTCCCGGTGTATTTACCTCTAAATTA 59.655 37.037 0.00 0.00 38.62 1.40
3006 4249 6.157471 ACTCCCGGTGTATTTACCTCTAAATT 59.843 38.462 0.00 0.00 38.62 1.82
3007 4250 5.664457 ACTCCCGGTGTATTTACCTCTAAAT 59.336 40.000 0.00 0.00 38.62 1.40
3008 4251 5.025453 ACTCCCGGTGTATTTACCTCTAAA 58.975 41.667 0.00 0.00 38.62 1.85
3009 4252 4.613437 ACTCCCGGTGTATTTACCTCTAA 58.387 43.478 0.00 0.00 38.62 2.10
3010 4253 4.255510 ACTCCCGGTGTATTTACCTCTA 57.744 45.455 0.00 0.00 38.62 2.43
3026 4269 3.617263 CACGTGCAAGTTCTATAACTCCC 59.383 47.826 0.82 0.00 45.37 4.30
3032 4275 2.229543 ACCGTCACGTGCAAGTTCTATA 59.770 45.455 11.67 0.00 0.00 1.31
3330 4576 3.495434 AGTTTGTAACCGAACCATCCA 57.505 42.857 0.00 0.00 35.84 3.41
3481 4729 1.345415 AGCCATGGTGCTTCCTTTTTG 59.655 47.619 14.67 0.00 38.85 2.44
3516 4764 6.646240 GGTAATCTTAGTTAACGTTGACCACA 59.354 38.462 18.49 2.99 0.00 4.17
3826 5080 6.649973 TCGGATGGTACGAAACATTTTAAAGA 59.350 34.615 0.00 0.00 37.42 2.52
4278 5533 8.630054 TTGTGCTCAAGGTTAACTAACATTAT 57.370 30.769 5.42 0.00 38.01 1.28
4659 5914 4.545610 TGTTTCCGATCATCAAACTTTGC 58.454 39.130 10.76 0.00 32.28 3.68
4663 5918 7.630242 AATACATGTTTCCGATCATCAAACT 57.370 32.000 2.30 0.00 32.28 2.66
4714 5969 1.059264 GTCATAGAACTTGCACGCGAC 59.941 52.381 15.93 4.74 0.00 5.19
4866 6121 5.341872 TGGCCAGAAATTTGGATAACATG 57.658 39.130 0.00 0.00 40.87 3.21
4941 6196 1.889829 AGCTCGTCTGTTTCTAGTGCT 59.110 47.619 0.00 0.00 0.00 4.40
4963 6218 0.589223 ATCTCGTCGCCGATCTTCTC 59.411 55.000 0.00 0.00 43.27 2.87
4972 6227 1.442857 CGATGCCTATCTCGTCGCC 60.443 63.158 0.00 0.00 36.38 5.54
5031 6286 2.743928 GCTGTGCCCTCGGTCTTG 60.744 66.667 0.00 0.00 0.00 3.02
5169 6424 3.071206 GCCACCTCCGAGAGCTCA 61.071 66.667 17.77 0.00 0.00 4.26
5294 6549 3.948360 TCACCCTACCCCTGCCCA 61.948 66.667 0.00 0.00 0.00 5.36
5418 6673 3.726607 GAACTGAGGCCTACAGATCATG 58.273 50.000 28.29 10.60 37.22 3.07
5427 6682 2.361992 TCCGCGAACTGAGGCCTA 60.362 61.111 4.42 0.00 37.48 3.93
5517 6772 1.813102 TGGCCTCCCCAATTTTGTTT 58.187 45.000 3.32 0.00 41.82 2.83
5528 6783 0.033699 AAGCTTCAGAATGGCCTCCC 60.034 55.000 3.32 0.00 36.16 4.30
5619 6879 1.148027 AGAGAAGACCCACCACTCTCA 59.852 52.381 0.00 0.00 33.47 3.27
5631 6892 3.895232 TTGATGGCCAGTAGAGAAGAC 57.105 47.619 13.05 0.00 0.00 3.01
5649 6910 9.406828 GATGATACATGGTCAATCAATTCATTG 57.593 33.333 7.08 0.00 39.10 2.82
5650 6911 9.363401 AGATGATACATGGTCAATCAATTCATT 57.637 29.630 7.08 0.00 33.60 2.57
5690 6951 5.685511 CAGCTGCAACAATTAAAGTAAACGT 59.314 36.000 0.00 0.00 0.00 3.99
5691 6952 5.912396 TCAGCTGCAACAATTAAAGTAAACG 59.088 36.000 9.47 0.00 0.00 3.60
5697 6958 9.584839 GTTTTTATTCAGCTGCAACAATTAAAG 57.415 29.630 9.47 0.00 0.00 1.85
5762 7024 5.046878 ACGAACACAAGATACCATTGTAGGA 60.047 40.000 0.00 0.00 38.80 2.94
5767 7029 5.122239 ACATCACGAACACAAGATACCATTG 59.878 40.000 0.00 0.00 0.00 2.82
5772 7034 4.669197 GCCAACATCACGAACACAAGATAC 60.669 45.833 0.00 0.00 0.00 2.24
5776 7038 1.334960 GGCCAACATCACGAACACAAG 60.335 52.381 0.00 0.00 0.00 3.16
5777 7039 0.665835 GGCCAACATCACGAACACAA 59.334 50.000 0.00 0.00 0.00 3.33
5784 7046 2.613026 TACATAGGGCCAACATCACG 57.387 50.000 6.18 0.00 0.00 4.35
5785 7047 4.718961 AGATTACATAGGGCCAACATCAC 58.281 43.478 6.18 0.00 0.00 3.06
5786 7048 4.503123 CGAGATTACATAGGGCCAACATCA 60.503 45.833 6.18 0.00 0.00 3.07
5787 7049 3.997021 CGAGATTACATAGGGCCAACATC 59.003 47.826 6.18 0.00 0.00 3.06
5789 7051 2.104111 CCGAGATTACATAGGGCCAACA 59.896 50.000 6.18 0.00 0.00 3.33
5790 7052 2.104281 ACCGAGATTACATAGGGCCAAC 59.896 50.000 6.18 0.00 0.00 3.77
5791 7053 2.104111 CACCGAGATTACATAGGGCCAA 59.896 50.000 6.18 0.00 0.00 4.52
5792 7054 1.691976 CACCGAGATTACATAGGGCCA 59.308 52.381 6.18 0.00 0.00 5.36
5793 7055 1.968493 TCACCGAGATTACATAGGGCC 59.032 52.381 0.00 0.00 0.00 5.80
5795 7057 3.641906 ACCTTCACCGAGATTACATAGGG 59.358 47.826 0.00 0.00 0.00 3.53
5798 7060 4.468510 ACCAACCTTCACCGAGATTACATA 59.531 41.667 0.00 0.00 0.00 2.29
5799 7061 3.263425 ACCAACCTTCACCGAGATTACAT 59.737 43.478 0.00 0.00 0.00 2.29
5800 7062 2.635915 ACCAACCTTCACCGAGATTACA 59.364 45.455 0.00 0.00 0.00 2.41
5801 7063 3.329929 ACCAACCTTCACCGAGATTAC 57.670 47.619 0.00 0.00 0.00 1.89
5802 7064 3.307199 GGAACCAACCTTCACCGAGATTA 60.307 47.826 0.00 0.00 0.00 1.75
5845 7108 4.635765 GTGCATGCTTACTAGTGGATGAAA 59.364 41.667 20.33 3.64 0.00 2.69
5846 7109 4.191544 GTGCATGCTTACTAGTGGATGAA 58.808 43.478 20.33 5.32 0.00 2.57
5847 7110 3.737972 CGTGCATGCTTACTAGTGGATGA 60.738 47.826 20.33 2.35 0.00 2.92
5848 7111 2.541346 CGTGCATGCTTACTAGTGGATG 59.459 50.000 20.33 7.94 0.00 3.51
5849 7112 2.168521 ACGTGCATGCTTACTAGTGGAT 59.831 45.455 20.33 0.00 0.00 3.41
5850 7113 1.548719 ACGTGCATGCTTACTAGTGGA 59.451 47.619 20.33 0.00 0.00 4.02
5851 7114 1.660607 CACGTGCATGCTTACTAGTGG 59.339 52.381 20.33 0.00 0.00 4.00
5852 7115 1.061131 GCACGTGCATGCTTACTAGTG 59.939 52.381 34.52 18.13 42.62 2.74
5933 7196 5.331902 CGTTGGATCACAAAATATGTCACC 58.668 41.667 0.00 0.00 41.46 4.02
6020 7300 5.132502 TGGCATAAGACACCATGATAAAGG 58.867 41.667 0.00 0.00 0.00 3.11
6056 7351 4.195225 TCTGGATTATGTGTTACACGCA 57.805 40.909 11.07 0.00 43.36 5.24
6070 7365 8.408043 TTTATGTGAAGACATGTTTCTGGATT 57.592 30.769 16.46 0.13 43.03 3.01
6242 7537 9.852091 GAAGAGAATGAAGCTCAAAACAATATT 57.148 29.630 0.00 0.00 34.85 1.28
6361 7656 7.083875 ACACCATGCTTATTTGTATACACAC 57.916 36.000 4.68 0.00 33.30 3.82
6593 7895 3.642848 ACCCTGCATTCAAAGACAACATT 59.357 39.130 0.00 0.00 0.00 2.71
6598 7900 3.731652 CAAACCCTGCATTCAAAGACA 57.268 42.857 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.