Multiple sequence alignment - TraesCS7A01G477900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G477900 chr7A 100.000 2805 0 0 1 2805 671220706 671217902 0.000000e+00 5180.0
1 TraesCS7A01G477900 chr7A 93.023 774 25 3 2045 2789 655442159 655441386 0.000000e+00 1103.0
2 TraesCS7A01G477900 chr7A 91.975 785 22 8 2045 2789 177004348 177003565 0.000000e+00 1062.0
3 TraesCS7A01G477900 chr7A 78.065 310 66 2 1020 1328 29165558 29165250 7.930000e-46 195.0
4 TraesCS7A01G477900 chr7A 88.095 126 11 4 457 579 608412222 608412346 2.250000e-31 147.0
5 TraesCS7A01G477900 chr7A 83.846 130 16 5 498 624 712463555 712463682 4.910000e-23 119.0
6 TraesCS7A01G477900 chr7A 91.667 84 5 2 450 531 579564476 579564393 6.350000e-22 115.0
7 TraesCS7A01G477900 chr7A 87.500 96 6 5 525 618 127127522 127127613 3.820000e-19 106.0
8 TraesCS7A01G477900 chr7B 92.068 1059 48 25 787 1814 645255905 645256958 0.000000e+00 1458.0
9 TraesCS7A01G477900 chr7B 93.478 92 5 1 527 617 406759550 406759459 4.870000e-28 135.0
10 TraesCS7A01G477900 chr7B 94.872 78 3 1 455 531 15101171 15101094 1.360000e-23 121.0
11 TraesCS7A01G477900 chr7B 86.207 87 11 1 531 616 10922033 10921947 2.970000e-15 93.5
12 TraesCS7A01G477900 chr7D 93.707 874 43 10 951 1814 579536334 579535463 0.000000e+00 1299.0
13 TraesCS7A01G477900 chr7D 89.333 375 31 5 81 454 579537074 579536708 1.970000e-126 462.0
14 TraesCS7A01G477900 chr7D 91.077 325 24 4 623 945 579536713 579536392 4.290000e-118 435.0
15 TraesCS7A01G477900 chr7D 94.872 78 2 2 456 531 586778946 586778869 1.360000e-23 121.0
16 TraesCS7A01G477900 chr5A 93.548 775 19 5 2045 2789 561682863 561682090 0.000000e+00 1125.0
17 TraesCS7A01G477900 chr5A 84.746 118 14 4 505 620 82878901 82879016 6.350000e-22 115.0
18 TraesCS7A01G477900 chr3A 92.894 774 26 9 2045 2789 641812403 641813176 0.000000e+00 1098.0
19 TraesCS7A01G477900 chr3A 91.860 774 34 3 2045 2789 65796763 65795990 0.000000e+00 1053.0
20 TraesCS7A01G477900 chr6A 92.190 781 26 15 2042 2789 549402310 549403088 0.000000e+00 1072.0
21 TraesCS7A01G477900 chr6A 91.871 775 28 15 2044 2789 614987389 614988157 0.000000e+00 1050.0
22 TraesCS7A01G477900 chr6A 75.321 312 63 12 1022 1326 605052454 605052150 1.360000e-28 137.0
23 TraesCS7A01G477900 chr2D 92.422 673 37 12 2124 2789 174239478 174238813 0.000000e+00 948.0
24 TraesCS7A01G477900 chr5B 88.793 580 56 7 2214 2789 486364201 486363627 0.000000e+00 702.0
25 TraesCS7A01G477900 chr5B 96.053 76 1 2 456 529 635195501 635195576 3.790000e-24 122.0
26 TraesCS7A01G477900 chr5B 87.879 99 9 2 522 618 567870952 567871049 2.280000e-21 113.0
27 TraesCS7A01G477900 chr1B 80.178 338 65 2 995 1331 349512101 349511765 4.640000e-63 252.0
28 TraesCS7A01G477900 chr1B 80.065 306 61 0 1020 1325 349349464 349349159 7.820000e-56 228.0
29 TraesCS7A01G477900 chr1B 78.635 337 65 7 994 1326 349541415 349541748 1.690000e-52 217.0
30 TraesCS7A01G477900 chr1B 84.314 102 15 1 521 621 623884843 623884742 6.390000e-17 99.0
31 TraesCS7A01G477900 chr4D 79.456 331 68 0 996 1326 384951448 384951118 4.670000e-58 235.0
32 TraesCS7A01G477900 chr1D 80.065 306 61 0 1020 1325 262341499 262341804 7.820000e-56 228.0
33 TraesCS7A01G477900 chr1D 81.226 261 47 2 1067 1326 262252798 262253057 2.830000e-50 209.0
34 TraesCS7A01G477900 chr1D 80.851 141 27 0 1067 1207 7745115 7745255 8.210000e-21 111.0
35 TraesCS7A01G477900 chr1D 77.160 162 33 4 1071 1230 7707093 7707252 1.070000e-14 91.6
36 TraesCS7A01G477900 chr1A 80.065 306 61 0 1020 1325 337629798 337629493 7.820000e-56 228.0
37 TraesCS7A01G477900 chr1A 76.426 263 54 8 1070 1328 9103940 9103682 4.870000e-28 135.0
38 TraesCS7A01G477900 chr4B 78.852 331 70 0 996 1326 471776088 471775758 1.010000e-54 224.0
39 TraesCS7A01G477900 chr4B 95.349 86 4 0 531 616 422179888 422179803 1.360000e-28 137.0
40 TraesCS7A01G477900 chr4B 94.318 88 5 0 531 618 5047382 5047469 4.870000e-28 135.0
41 TraesCS7A01G477900 chr4B 94.318 88 5 0 531 618 610558521 610558434 4.870000e-28 135.0
42 TraesCS7A01G477900 chr4B 94.872 78 2 2 456 531 73262768 73262691 1.360000e-23 121.0
43 TraesCS7A01G477900 chr3B 95.402 87 4 0 531 617 483922304 483922390 3.770000e-29 139.0
44 TraesCS7A01G477900 chr3B 95.349 86 4 0 531 616 649777954 649778039 1.360000e-28 137.0
45 TraesCS7A01G477900 chr3B 85.714 98 13 1 522 618 738187988 738188085 4.940000e-18 102.0
46 TraesCS7A01G477900 chrUn 95.349 86 2 2 2042 2126 82935962 82935878 4.870000e-28 135.0
47 TraesCS7A01G477900 chrUn 95.349 86 2 2 2042 2126 393046698 393046614 4.870000e-28 135.0
48 TraesCS7A01G477900 chr2B 85.496 131 12 6 2130 2256 749903288 749903415 2.270000e-26 130.0
49 TraesCS7A01G477900 chr2B 94.872 78 3 1 455 531 517750902 517750825 1.360000e-23 121.0
50 TraesCS7A01G477900 chr2B 89.011 91 7 3 443 531 373185779 373185690 2.950000e-20 110.0
51 TraesCS7A01G477900 chr6B 89.888 89 7 2 445 531 664459013 664459101 2.280000e-21 113.0
52 TraesCS7A01G477900 chr2A 88.298 94 9 2 531 623 226553807 226553715 8.210000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G477900 chr7A 671217902 671220706 2804 True 5180 5180 100.000000 1 2805 1 chr7A.!!$R5 2804
1 TraesCS7A01G477900 chr7A 655441386 655442159 773 True 1103 1103 93.023000 2045 2789 1 chr7A.!!$R4 744
2 TraesCS7A01G477900 chr7A 177003565 177004348 783 True 1062 1062 91.975000 2045 2789 1 chr7A.!!$R2 744
3 TraesCS7A01G477900 chr7B 645255905 645256958 1053 False 1458 1458 92.068000 787 1814 1 chr7B.!!$F1 1027
4 TraesCS7A01G477900 chr7D 579535463 579537074 1611 True 732 1299 91.372333 81 1814 3 chr7D.!!$R2 1733
5 TraesCS7A01G477900 chr5A 561682090 561682863 773 True 1125 1125 93.548000 2045 2789 1 chr5A.!!$R1 744
6 TraesCS7A01G477900 chr3A 641812403 641813176 773 False 1098 1098 92.894000 2045 2789 1 chr3A.!!$F1 744
7 TraesCS7A01G477900 chr3A 65795990 65796763 773 True 1053 1053 91.860000 2045 2789 1 chr3A.!!$R1 744
8 TraesCS7A01G477900 chr6A 549402310 549403088 778 False 1072 1072 92.190000 2042 2789 1 chr6A.!!$F1 747
9 TraesCS7A01G477900 chr6A 614987389 614988157 768 False 1050 1050 91.871000 2044 2789 1 chr6A.!!$F2 745
10 TraesCS7A01G477900 chr2D 174238813 174239478 665 True 948 948 92.422000 2124 2789 1 chr2D.!!$R1 665
11 TraesCS7A01G477900 chr5B 486363627 486364201 574 True 702 702 88.793000 2214 2789 1 chr5B.!!$R1 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 532 0.036022 TGGATGACACGTGGCATTCA 59.964 50.0 36.64 36.64 46.54 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1992 2066 0.033208 GGGAGATGGGTTGGCATCAA 60.033 55.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.559998 ACAGAACAAAAGCAACCACG 57.440 45.000 0.00 0.00 0.00 4.94
20 21 1.134175 ACAGAACAAAAGCAACCACGG 59.866 47.619 0.00 0.00 0.00 4.94
21 22 1.134175 CAGAACAAAAGCAACCACGGT 59.866 47.619 0.00 0.00 0.00 4.83
22 23 1.822371 AGAACAAAAGCAACCACGGTT 59.178 42.857 0.00 0.00 39.13 4.44
35 36 5.789710 AACCACGGTTGAATCGTTATAAG 57.210 39.130 0.00 0.00 38.94 1.73
36 37 5.075858 ACCACGGTTGAATCGTTATAAGA 57.924 39.130 0.00 0.00 38.94 2.10
37 38 4.866486 ACCACGGTTGAATCGTTATAAGAC 59.134 41.667 0.00 0.00 38.94 3.01
38 39 4.865925 CCACGGTTGAATCGTTATAAGACA 59.134 41.667 0.00 0.00 38.94 3.41
39 40 5.522460 CCACGGTTGAATCGTTATAAGACAT 59.478 40.000 0.00 0.00 38.94 3.06
40 41 6.698329 CCACGGTTGAATCGTTATAAGACATA 59.302 38.462 0.00 0.00 38.94 2.29
41 42 7.223193 CCACGGTTGAATCGTTATAAGACATAA 59.777 37.037 0.00 0.00 38.94 1.90
42 43 8.597227 CACGGTTGAATCGTTATAAGACATAAA 58.403 33.333 0.00 0.00 38.94 1.40
43 44 9.153721 ACGGTTGAATCGTTATAAGACATAAAA 57.846 29.630 0.00 0.00 37.61 1.52
44 45 9.976255 CGGTTGAATCGTTATAAGACATAAAAA 57.024 29.630 0.00 0.00 0.00 1.94
68 69 9.858247 AAATAACATGTATAGAACGCATAAACG 57.142 29.630 0.00 0.00 39.50 3.60
79 80 3.787785 ACGCATAAACGTCATGATACCA 58.212 40.909 12.85 0.00 44.43 3.25
100 101 2.028876 TCGTCAAGACAGTCTGGACAA 58.971 47.619 30.00 15.58 45.62 3.18
105 106 3.134458 CAAGACAGTCTGGACAAAGGTC 58.866 50.000 3.05 5.45 43.55 3.85
114 115 1.967779 TGGACAAAGGTCTCATCGTGA 59.032 47.619 0.00 0.00 43.77 4.35
117 118 3.372206 GGACAAAGGTCTCATCGTGATTG 59.628 47.826 0.00 0.00 43.77 2.67
120 121 0.179100 AGGTCTCATCGTGATTGCCG 60.179 55.000 0.00 0.00 0.00 5.69
126 127 0.460109 CATCGTGATTGCCGAGACCA 60.460 55.000 0.00 0.00 37.81 4.02
128 129 2.456119 CGTGATTGCCGAGACCAGC 61.456 63.158 0.00 0.00 0.00 4.85
138 139 1.339055 CCGAGACCAGCCAATGAAGAA 60.339 52.381 0.00 0.00 0.00 2.52
139 140 1.734465 CGAGACCAGCCAATGAAGAAC 59.266 52.381 0.00 0.00 0.00 3.01
144 145 3.233507 ACCAGCCAATGAAGAACAACAT 58.766 40.909 0.00 0.00 0.00 2.71
158 159 9.554395 TGAAGAACAACATAACATCAAGTAGAA 57.446 29.630 0.00 0.00 0.00 2.10
162 163 9.944663 GAACAACATAACATCAAGTAGAAAACA 57.055 29.630 0.00 0.00 0.00 2.83
178 179 5.734311 AGAAAACATCGACAACAAGTAACG 58.266 37.500 0.00 0.00 0.00 3.18
189 190 2.762745 ACAAGTAACGACGCAATTCCT 58.237 42.857 0.00 0.00 0.00 3.36
207 208 3.204467 TTTGCCACTAAGCCCGGCT 62.204 57.895 5.94 5.94 46.39 5.52
215 216 3.139077 CACTAAGCCCGGCTAATAAAGG 58.861 50.000 13.73 0.92 38.25 3.11
233 234 8.477419 AATAAAGGTCAGGACAAGAATTTTCA 57.523 30.769 1.41 0.00 0.00 2.69
256 257 1.971167 GGGCATGAAACGGTGCTCA 60.971 57.895 0.00 0.00 41.46 4.26
271 272 2.744202 GTGCTCAAATCGACATCTTGGT 59.256 45.455 0.00 0.00 0.00 3.67
276 277 3.930229 TCAAATCGACATCTTGGTAACGG 59.070 43.478 0.00 0.00 42.51 4.44
279 280 3.431922 TCGACATCTTGGTAACGGATC 57.568 47.619 0.00 0.00 42.51 3.36
316 318 1.067212 CGCTAGTACTCCATGTGGGTC 59.933 57.143 0.00 0.00 38.11 4.46
333 335 2.298729 GGGTCAAAATGGCACTAGCAAA 59.701 45.455 0.00 0.00 44.61 3.68
344 346 2.159198 GCACTAGCAAATTGGGGATGTG 60.159 50.000 0.00 0.00 41.58 3.21
381 383 1.281867 TGAGGTGGATAAGGCAAGGTG 59.718 52.381 0.00 0.00 0.00 4.00
382 384 0.625849 AGGTGGATAAGGCAAGGTGG 59.374 55.000 0.00 0.00 0.00 4.61
383 385 0.395724 GGTGGATAAGGCAAGGTGGG 60.396 60.000 0.00 0.00 0.00 4.61
384 386 0.331616 GTGGATAAGGCAAGGTGGGT 59.668 55.000 0.00 0.00 0.00 4.51
385 387 1.562475 GTGGATAAGGCAAGGTGGGTA 59.438 52.381 0.00 0.00 0.00 3.69
386 388 2.174854 GTGGATAAGGCAAGGTGGGTAT 59.825 50.000 0.00 0.00 0.00 2.73
387 389 2.174639 TGGATAAGGCAAGGTGGGTATG 59.825 50.000 0.00 0.00 0.00 2.39
396 398 3.073946 GCAAGGTGGGTATGGGTATGTAT 59.926 47.826 0.00 0.00 0.00 2.29
457 459 6.480524 TTATTGAAGCATCGATAATTCCGG 57.519 37.500 15.44 0.00 37.11 5.14
458 460 3.744238 TGAAGCATCGATAATTCCGGA 57.256 42.857 0.00 0.00 0.00 5.14
459 461 4.066646 TGAAGCATCGATAATTCCGGAA 57.933 40.909 21.37 21.37 0.00 4.30
460 462 4.447290 TGAAGCATCGATAATTCCGGAAA 58.553 39.130 23.08 5.90 0.00 3.13
461 463 4.878971 TGAAGCATCGATAATTCCGGAAAA 59.121 37.500 23.08 13.16 0.00 2.29
462 464 5.355630 TGAAGCATCGATAATTCCGGAAAAA 59.644 36.000 23.08 12.77 0.00 1.94
485 487 7.611213 AAAAATTATGAGACCAGGTCTTACG 57.389 36.000 23.78 0.00 43.53 3.18
486 488 4.939052 ATTATGAGACCAGGTCTTACGG 57.061 45.455 23.78 0.00 43.53 4.02
487 489 1.486211 ATGAGACCAGGTCTTACGGG 58.514 55.000 23.78 0.00 43.53 5.28
488 490 0.113776 TGAGACCAGGTCTTACGGGT 59.886 55.000 23.78 0.00 43.53 5.28
489 491 1.264295 GAGACCAGGTCTTACGGGTT 58.736 55.000 23.78 0.00 43.53 4.11
490 492 2.225091 TGAGACCAGGTCTTACGGGTTA 60.225 50.000 23.78 0.86 43.53 2.85
491 493 2.426381 GAGACCAGGTCTTACGGGTTAG 59.574 54.545 23.78 0.00 43.53 2.34
492 494 2.174360 GACCAGGTCTTACGGGTTAGT 58.826 52.381 12.94 0.00 32.77 2.24
493 495 3.010584 AGACCAGGTCTTACGGGTTAGTA 59.989 47.826 17.31 0.00 40.28 1.82
494 496 3.359950 ACCAGGTCTTACGGGTTAGTAG 58.640 50.000 0.00 0.00 0.00 2.57
495 497 2.692041 CCAGGTCTTACGGGTTAGTAGG 59.308 54.545 0.00 0.00 0.00 3.18
496 498 3.359950 CAGGTCTTACGGGTTAGTAGGT 58.640 50.000 0.00 0.00 0.00 3.08
497 499 3.129988 CAGGTCTTACGGGTTAGTAGGTG 59.870 52.174 0.00 0.00 0.00 4.00
498 500 3.010584 AGGTCTTACGGGTTAGTAGGTGA 59.989 47.826 0.00 0.00 0.00 4.02
499 501 3.379688 GGTCTTACGGGTTAGTAGGTGAG 59.620 52.174 0.00 0.00 0.00 3.51
500 502 4.265073 GTCTTACGGGTTAGTAGGTGAGA 58.735 47.826 0.00 0.00 0.00 3.27
501 503 4.095632 GTCTTACGGGTTAGTAGGTGAGAC 59.904 50.000 0.29 0.29 38.34 3.36
502 504 1.844687 ACGGGTTAGTAGGTGAGACC 58.155 55.000 0.00 0.00 38.99 3.85
503 505 1.109609 CGGGTTAGTAGGTGAGACCC 58.890 60.000 0.00 0.00 45.19 4.46
507 509 2.699321 GGTTAGTAGGTGAGACCCATCC 59.301 54.545 0.00 0.00 39.75 3.51
508 510 3.630311 GGTTAGTAGGTGAGACCCATCCT 60.630 52.174 0.00 0.00 39.75 3.24
509 511 2.166907 AGTAGGTGAGACCCATCCTG 57.833 55.000 0.00 0.00 39.75 3.86
510 512 1.646447 AGTAGGTGAGACCCATCCTGA 59.354 52.381 0.00 0.00 39.75 3.86
511 513 2.248686 AGTAGGTGAGACCCATCCTGAT 59.751 50.000 0.00 0.00 39.75 2.90
512 514 1.504912 AGGTGAGACCCATCCTGATG 58.495 55.000 0.00 0.00 39.75 3.07
524 526 0.536724 TCCTGATGGATGACACGTGG 59.463 55.000 21.57 1.66 37.46 4.94
525 527 1.091771 CCTGATGGATGACACGTGGC 61.092 60.000 21.57 19.24 34.57 5.01
526 528 0.391528 CTGATGGATGACACGTGGCA 60.392 55.000 29.28 29.28 37.54 4.92
528 530 1.339920 TGATGGATGACACGTGGCATT 60.340 47.619 36.07 22.11 45.42 3.56
529 531 1.331756 GATGGATGACACGTGGCATTC 59.668 52.381 36.07 34.16 45.42 2.67
530 532 0.036022 TGGATGACACGTGGCATTCA 59.964 50.000 36.64 36.64 46.54 2.57
531 533 1.339920 TGGATGACACGTGGCATTCAT 60.340 47.619 36.64 26.22 43.95 2.57
532 534 1.064505 GGATGACACGTGGCATTCATG 59.935 52.381 36.07 0.00 45.42 3.07
533 535 1.532505 GATGACACGTGGCATTCATGC 60.533 52.381 36.07 20.17 45.42 4.06
548 550 6.772770 CATTCATGCTTTGTGATTTGTGAA 57.227 33.333 0.00 0.00 0.00 3.18
549 551 7.359262 CATTCATGCTTTGTGATTTGTGAAT 57.641 32.000 0.00 0.00 35.97 2.57
550 552 6.772770 TTCATGCTTTGTGATTTGTGAATG 57.227 33.333 0.00 0.00 0.00 2.67
551 553 4.687018 TCATGCTTTGTGATTTGTGAATGC 59.313 37.500 0.00 0.00 0.00 3.56
552 554 3.391965 TGCTTTGTGATTTGTGAATGCC 58.608 40.909 0.00 0.00 0.00 4.40
553 555 3.181468 TGCTTTGTGATTTGTGAATGCCA 60.181 39.130 0.00 0.00 0.00 4.92
554 556 3.184986 GCTTTGTGATTTGTGAATGCCAC 59.815 43.478 0.00 0.00 45.88 5.01
562 564 3.975992 GTGAATGCCACGTGTCATC 57.024 52.632 13.12 7.23 35.86 2.92
563 565 0.447801 GTGAATGCCACGTGTCATCC 59.552 55.000 13.12 0.00 35.86 3.51
564 566 0.036022 TGAATGCCACGTGTCATCCA 59.964 50.000 13.12 2.86 0.00 3.41
565 567 1.339920 TGAATGCCACGTGTCATCCAT 60.340 47.619 13.12 0.00 0.00 3.41
566 568 1.331756 GAATGCCACGTGTCATCCATC 59.668 52.381 13.12 3.25 0.00 3.51
567 569 0.252761 ATGCCACGTGTCATCCATCA 59.747 50.000 15.65 0.00 0.00 3.07
568 570 0.391528 TGCCACGTGTCATCCATCAG 60.392 55.000 15.65 0.00 0.00 2.90
569 571 0.108186 GCCACGTGTCATCCATCAGA 60.108 55.000 15.65 0.00 0.00 3.27
570 572 1.675714 GCCACGTGTCATCCATCAGAA 60.676 52.381 15.65 0.00 0.00 3.02
571 573 2.910199 CCACGTGTCATCCATCAGAAT 58.090 47.619 15.65 0.00 0.00 2.40
572 574 2.868583 CCACGTGTCATCCATCAGAATC 59.131 50.000 15.65 0.00 0.00 2.52
573 575 2.537214 CACGTGTCATCCATCAGAATCG 59.463 50.000 7.58 0.00 0.00 3.34
574 576 2.130395 CGTGTCATCCATCAGAATCGG 58.870 52.381 0.00 0.00 0.00 4.18
575 577 2.481969 CGTGTCATCCATCAGAATCGGT 60.482 50.000 0.00 0.00 0.00 4.69
576 578 3.126831 GTGTCATCCATCAGAATCGGTC 58.873 50.000 0.00 0.00 0.00 4.79
577 579 3.033909 TGTCATCCATCAGAATCGGTCT 58.966 45.455 0.00 0.00 36.88 3.85
578 580 3.068732 TGTCATCCATCAGAATCGGTCTC 59.931 47.826 0.00 0.00 32.70 3.36
579 581 3.068732 GTCATCCATCAGAATCGGTCTCA 59.931 47.826 0.00 0.00 32.70 3.27
580 582 3.899980 TCATCCATCAGAATCGGTCTCAT 59.100 43.478 0.00 0.00 32.70 2.90
581 583 4.021632 TCATCCATCAGAATCGGTCTCATC 60.022 45.833 0.00 0.00 32.70 2.92
582 584 2.630098 TCCATCAGAATCGGTCTCATCC 59.370 50.000 0.00 0.00 32.70 3.51
597 599 5.713792 TCTCATCCGAATTCTATGAGACC 57.286 43.478 28.79 0.00 46.59 3.85
598 600 5.389520 TCTCATCCGAATTCTATGAGACCT 58.610 41.667 28.79 2.21 46.59 3.85
599 601 5.242615 TCTCATCCGAATTCTATGAGACCTG 59.757 44.000 28.79 15.63 46.59 4.00
600 602 4.281941 TCATCCGAATTCTATGAGACCTGG 59.718 45.833 13.45 0.00 0.00 4.45
601 603 3.643237 TCCGAATTCTATGAGACCTGGT 58.357 45.455 0.00 0.00 0.00 4.00
602 604 3.637229 TCCGAATTCTATGAGACCTGGTC 59.363 47.826 19.20 19.20 0.00 4.02
603 605 3.639094 CCGAATTCTATGAGACCTGGTCT 59.361 47.826 28.70 28.70 46.42 3.85
693 695 0.461163 CGGGACATTGTATCACGCCA 60.461 55.000 0.00 0.00 35.96 5.69
721 723 2.753043 TGGGACGAGGACGCCTAC 60.753 66.667 0.00 0.00 43.96 3.18
725 727 2.754658 ACGAGGACGCCTACCTGG 60.755 66.667 0.00 0.00 43.96 4.45
730 732 2.280552 GGACGCCTACCTGGACACA 61.281 63.158 0.00 0.00 38.35 3.72
731 733 1.669440 GACGCCTACCTGGACACAA 59.331 57.895 0.00 0.00 38.35 3.33
732 734 0.249398 GACGCCTACCTGGACACAAT 59.751 55.000 0.00 0.00 38.35 2.71
776 778 2.653890 CAACAGCCACGAAATGAACAG 58.346 47.619 0.00 0.00 0.00 3.16
777 779 0.593128 ACAGCCACGAAATGAACAGC 59.407 50.000 0.00 0.00 0.00 4.40
796 800 5.393124 ACAGCGTTCACACATTATTCAATG 58.607 37.500 0.00 0.00 45.94 2.82
821 825 2.126424 GACACACGCCTCTCCGAC 60.126 66.667 0.00 0.00 0.00 4.79
851 855 0.461961 CTCAGATCTCGGGACCCAAC 59.538 60.000 12.15 0.00 0.00 3.77
860 864 2.686106 GGACCCAACCCGCCTCTA 60.686 66.667 0.00 0.00 0.00 2.43
872 876 1.495878 CGCCTCTACATCACAGCATC 58.504 55.000 0.00 0.00 0.00 3.91
897 901 5.220835 GCAAACGAATCATATCACATGTGGA 60.221 40.000 25.16 14.70 0.00 4.02
899 903 4.060900 ACGAATCATATCACATGTGGAGC 58.939 43.478 25.16 9.84 0.00 4.70
924 928 7.481798 GCGCATTATTTATACTGAATTGTAGCC 59.518 37.037 0.30 0.00 0.00 3.93
968 1027 9.218525 ACTACATATATCCAATCCCAATAGAGG 57.781 37.037 0.00 0.00 0.00 3.69
1008 1067 4.133796 GCAGAAACCATGGCCGGC 62.134 66.667 21.18 21.18 0.00 6.13
1152 1211 2.494918 CTCCTCCGCTACAACCCG 59.505 66.667 0.00 0.00 0.00 5.28
1189 1248 2.741985 TGCTCATCCACAACGGCG 60.742 61.111 4.80 4.80 33.14 6.46
1339 1398 1.005630 AAGGTGCGTGTCTCTCTGC 60.006 57.895 0.00 0.00 0.00 4.26
1340 1399 2.433318 GGTGCGTGTCTCTCTGCC 60.433 66.667 0.00 0.00 0.00 4.85
1341 1400 2.340078 GTGCGTGTCTCTCTGCCA 59.660 61.111 0.00 0.00 0.00 4.92
1342 1401 1.735920 GTGCGTGTCTCTCTGCCAG 60.736 63.158 0.00 0.00 0.00 4.85
1348 1407 1.613925 GTGTCTCTCTGCCAGTGTGTA 59.386 52.381 0.00 0.00 0.00 2.90
1367 1434 5.098211 GTGTATTTTCCTGCTCTGAAATGC 58.902 41.667 0.00 0.00 32.19 3.56
1395 1469 2.428071 GTGACGGTGTCGGTCGAC 60.428 66.667 15.60 15.60 44.77 4.20
1399 1473 3.054503 CGGTGTCGGTCGACCTCT 61.055 66.667 30.92 0.00 43.97 3.69
1429 1503 3.123620 GCTCTGCAGCTGTTCCCG 61.124 66.667 16.64 1.81 43.09 5.14
1448 1522 4.201122 CCTGGCTGGGCATCCTCC 62.201 72.222 1.84 0.00 0.00 4.30
1483 1557 4.821589 GCGAGGGCGGAGAAGGTG 62.822 72.222 0.00 0.00 38.16 4.00
1826 1900 2.843701 CTGGCTTCAGTTCAGTTCAGT 58.156 47.619 0.00 0.00 33.96 3.41
1827 1901 3.209410 CTGGCTTCAGTTCAGTTCAGTT 58.791 45.455 0.00 0.00 33.96 3.16
1828 1902 3.206150 TGGCTTCAGTTCAGTTCAGTTC 58.794 45.455 0.00 0.00 0.00 3.01
1829 1903 3.206150 GGCTTCAGTTCAGTTCAGTTCA 58.794 45.455 0.00 0.00 0.00 3.18
1830 1904 3.249559 GGCTTCAGTTCAGTTCAGTTCAG 59.750 47.826 0.00 0.00 0.00 3.02
1831 1905 3.873952 GCTTCAGTTCAGTTCAGTTCAGT 59.126 43.478 0.00 0.00 0.00 3.41
1832 1906 4.333926 GCTTCAGTTCAGTTCAGTTCAGTT 59.666 41.667 0.00 0.00 0.00 3.16
1833 1907 5.503194 GCTTCAGTTCAGTTCAGTTCAGTTC 60.503 44.000 0.00 0.00 0.00 3.01
1834 1908 5.084818 TCAGTTCAGTTCAGTTCAGTTCA 57.915 39.130 0.00 0.00 0.00 3.18
1835 1909 4.870426 TCAGTTCAGTTCAGTTCAGTTCAC 59.130 41.667 0.00 0.00 0.00 3.18
1836 1910 4.872691 CAGTTCAGTTCAGTTCAGTTCACT 59.127 41.667 0.00 0.00 0.00 3.41
1837 1911 5.006165 CAGTTCAGTTCAGTTCAGTTCACTC 59.994 44.000 0.00 0.00 0.00 3.51
1838 1912 4.060038 TCAGTTCAGTTCAGTTCACTCC 57.940 45.455 0.00 0.00 0.00 3.85
1839 1913 3.450817 TCAGTTCAGTTCAGTTCACTCCA 59.549 43.478 0.00 0.00 0.00 3.86
1840 1914 4.081142 TCAGTTCAGTTCAGTTCACTCCAA 60.081 41.667 0.00 0.00 0.00 3.53
1841 1915 4.272018 CAGTTCAGTTCAGTTCACTCCAAG 59.728 45.833 0.00 0.00 0.00 3.61
1842 1916 4.080863 AGTTCAGTTCAGTTCACTCCAAGT 60.081 41.667 0.00 0.00 0.00 3.16
1843 1917 5.128827 AGTTCAGTTCAGTTCACTCCAAGTA 59.871 40.000 0.00 0.00 0.00 2.24
1844 1918 5.201713 TCAGTTCAGTTCACTCCAAGTAG 57.798 43.478 0.00 0.00 0.00 2.57
1845 1919 4.649674 TCAGTTCAGTTCACTCCAAGTAGT 59.350 41.667 0.00 0.00 0.00 2.73
1846 1920 5.831525 TCAGTTCAGTTCACTCCAAGTAGTA 59.168 40.000 0.00 0.00 0.00 1.82
1847 1921 6.016192 TCAGTTCAGTTCACTCCAAGTAGTAG 60.016 42.308 0.00 0.00 0.00 2.57
1848 1922 4.785511 TCAGTTCACTCCAAGTAGTAGC 57.214 45.455 0.00 0.00 0.00 3.58
1849 1923 4.149598 TCAGTTCACTCCAAGTAGTAGCA 58.850 43.478 0.00 0.00 0.00 3.49
1850 1924 4.218635 TCAGTTCACTCCAAGTAGTAGCAG 59.781 45.833 0.00 0.00 0.00 4.24
1851 1925 4.021894 CAGTTCACTCCAAGTAGTAGCAGT 60.022 45.833 0.00 0.00 0.00 4.40
1852 1926 4.021894 AGTTCACTCCAAGTAGTAGCAGTG 60.022 45.833 0.00 0.00 33.90 3.66
1853 1927 2.231478 TCACTCCAAGTAGTAGCAGTGC 59.769 50.000 7.13 7.13 32.86 4.40
1854 1928 2.232452 CACTCCAAGTAGTAGCAGTGCT 59.768 50.000 23.44 23.44 43.41 4.40
1855 1929 2.494073 ACTCCAAGTAGTAGCAGTGCTC 59.506 50.000 23.64 13.40 40.44 4.26
1856 1930 2.493675 CTCCAAGTAGTAGCAGTGCTCA 59.506 50.000 23.64 5.31 40.44 4.26
1857 1931 3.099905 TCCAAGTAGTAGCAGTGCTCAT 58.900 45.455 23.64 14.02 40.44 2.90
1858 1932 3.131223 TCCAAGTAGTAGCAGTGCTCATC 59.869 47.826 23.64 13.39 40.44 2.92
1859 1933 3.111838 CAAGTAGTAGCAGTGCTCATCG 58.888 50.000 23.64 1.05 40.44 3.84
1860 1934 2.370349 AGTAGTAGCAGTGCTCATCGT 58.630 47.619 23.64 5.39 40.44 3.73
1861 1935 2.098280 AGTAGTAGCAGTGCTCATCGTG 59.902 50.000 23.64 0.00 40.44 4.35
1862 1936 0.174389 AGTAGCAGTGCTCATCGTGG 59.826 55.000 23.64 0.00 40.44 4.94
1863 1937 0.173481 GTAGCAGTGCTCATCGTGGA 59.827 55.000 23.64 0.00 40.44 4.02
1864 1938 0.894835 TAGCAGTGCTCATCGTGGAA 59.105 50.000 23.64 0.00 40.44 3.53
1865 1939 0.671781 AGCAGTGCTCATCGTGGAAC 60.672 55.000 13.14 0.00 30.62 3.62
1866 1940 0.671781 GCAGTGCTCATCGTGGAACT 60.672 55.000 8.18 0.00 31.75 3.01
1867 1941 1.073964 CAGTGCTCATCGTGGAACTG 58.926 55.000 0.00 0.00 31.75 3.16
1868 1942 0.681733 AGTGCTCATCGTGGAACTGT 59.318 50.000 0.00 0.00 31.75 3.55
1869 1943 0.792640 GTGCTCATCGTGGAACTGTG 59.207 55.000 0.00 0.00 31.75 3.66
1870 1944 0.392706 TGCTCATCGTGGAACTGTGT 59.607 50.000 0.00 0.00 31.75 3.72
1871 1945 1.071605 GCTCATCGTGGAACTGTGTC 58.928 55.000 0.00 0.00 31.75 3.67
1872 1946 1.340658 CTCATCGTGGAACTGTGTCG 58.659 55.000 0.00 0.00 31.75 4.35
1873 1947 0.666274 TCATCGTGGAACTGTGTCGC 60.666 55.000 0.00 0.00 31.75 5.19
1874 1948 1.733041 ATCGTGGAACTGTGTCGCG 60.733 57.895 0.00 0.00 35.98 5.87
1875 1949 2.137425 ATCGTGGAACTGTGTCGCGA 62.137 55.000 3.71 3.71 45.28 5.87
1876 1950 1.947146 CGTGGAACTGTGTCGCGAA 60.947 57.895 12.06 0.00 36.65 4.70
1877 1951 1.282248 CGTGGAACTGTGTCGCGAAT 61.282 55.000 12.06 0.00 36.65 3.34
1878 1952 0.438830 GTGGAACTGTGTCGCGAATC 59.561 55.000 12.06 7.70 0.00 2.52
1879 1953 1.006825 TGGAACTGTGTCGCGAATCG 61.007 55.000 12.06 0.00 40.15 3.34
1880 1954 1.683790 GGAACTGTGTCGCGAATCGG 61.684 60.000 12.06 14.55 39.05 4.18
1881 1955 1.683790 GAACTGTGTCGCGAATCGGG 61.684 60.000 12.06 13.67 41.10 5.14
1882 1956 2.126071 CTGTGTCGCGAATCGGGT 60.126 61.111 12.06 0.00 40.60 5.28
1883 1957 2.431771 TGTGTCGCGAATCGGGTG 60.432 61.111 12.06 0.00 40.60 4.61
1884 1958 2.431942 GTGTCGCGAATCGGGTGT 60.432 61.111 12.06 0.00 40.60 4.16
1885 1959 2.431771 TGTCGCGAATCGGGTGTG 60.432 61.111 12.06 0.00 40.60 3.82
1886 1960 2.431942 GTCGCGAATCGGGTGTGT 60.432 61.111 12.06 0.00 40.60 3.72
1887 1961 1.153978 GTCGCGAATCGGGTGTGTA 60.154 57.895 12.06 0.00 40.60 2.90
1888 1962 1.153978 TCGCGAATCGGGTGTGTAC 60.154 57.895 18.77 0.00 40.60 2.90
1889 1963 1.153901 CGCGAATCGGGTGTGTACT 60.154 57.895 11.67 0.00 35.14 2.73
1890 1964 0.734942 CGCGAATCGGGTGTGTACTT 60.735 55.000 11.67 0.00 35.14 2.24
1891 1965 1.435577 GCGAATCGGGTGTGTACTTT 58.564 50.000 4.35 0.00 0.00 2.66
1892 1966 1.127951 GCGAATCGGGTGTGTACTTTG 59.872 52.381 4.35 0.00 0.00 2.77
1893 1967 1.730064 CGAATCGGGTGTGTACTTTGG 59.270 52.381 0.00 0.00 0.00 3.28
1894 1968 2.610976 CGAATCGGGTGTGTACTTTGGA 60.611 50.000 0.00 0.00 0.00 3.53
1895 1969 3.404899 GAATCGGGTGTGTACTTTGGAA 58.595 45.455 0.00 0.00 0.00 3.53
1896 1970 2.243602 TCGGGTGTGTACTTTGGAAC 57.756 50.000 0.00 0.00 0.00 3.62
1897 1971 1.485480 TCGGGTGTGTACTTTGGAACA 59.515 47.619 0.00 0.00 0.00 3.18
1898 1972 2.105134 TCGGGTGTGTACTTTGGAACAT 59.895 45.455 0.00 0.00 39.30 2.71
1899 1973 2.225491 CGGGTGTGTACTTTGGAACATG 59.775 50.000 0.00 0.00 39.30 3.21
1900 1974 3.219281 GGGTGTGTACTTTGGAACATGT 58.781 45.455 0.00 0.00 39.30 3.21
1901 1975 4.391155 GGGTGTGTACTTTGGAACATGTA 58.609 43.478 0.00 0.00 39.30 2.29
1902 1976 4.454504 GGGTGTGTACTTTGGAACATGTAG 59.545 45.833 0.00 0.00 39.30 2.74
1903 1977 4.083484 GGTGTGTACTTTGGAACATGTAGC 60.083 45.833 0.00 0.00 39.30 3.58
1904 1978 4.513692 GTGTGTACTTTGGAACATGTAGCA 59.486 41.667 0.00 0.00 39.30 3.49
1905 1979 4.513692 TGTGTACTTTGGAACATGTAGCAC 59.486 41.667 0.00 0.00 39.30 4.40
1906 1980 4.755123 GTGTACTTTGGAACATGTAGCACT 59.245 41.667 0.00 0.00 39.30 4.40
1907 1981 5.238650 GTGTACTTTGGAACATGTAGCACTT 59.761 40.000 0.00 0.00 39.30 3.16
1908 1982 4.836125 ACTTTGGAACATGTAGCACTTG 57.164 40.909 0.00 0.00 39.30 3.16
1909 1983 3.569701 ACTTTGGAACATGTAGCACTTGG 59.430 43.478 0.00 0.00 39.30 3.61
1910 1984 1.533625 TGGAACATGTAGCACTTGGC 58.466 50.000 0.00 0.00 45.30 4.52
1919 1993 4.675404 GCACTTGGCTACTCGTGT 57.325 55.556 0.00 0.00 40.25 4.49
1920 1994 3.806591 GCACTTGGCTACTCGTGTA 57.193 52.632 0.00 0.00 40.25 2.90
1921 1995 2.074547 GCACTTGGCTACTCGTGTAA 57.925 50.000 0.00 0.00 40.25 2.41
1922 1996 2.618053 GCACTTGGCTACTCGTGTAAT 58.382 47.619 0.00 0.00 40.25 1.89
1923 1997 3.777478 GCACTTGGCTACTCGTGTAATA 58.223 45.455 0.00 0.00 40.25 0.98
1924 1998 4.178540 GCACTTGGCTACTCGTGTAATAA 58.821 43.478 0.00 0.00 40.25 1.40
1925 1999 4.628333 GCACTTGGCTACTCGTGTAATAAA 59.372 41.667 0.00 0.00 40.25 1.40
1926 2000 5.220416 GCACTTGGCTACTCGTGTAATAAAG 60.220 44.000 0.00 5.40 40.25 1.85
1927 2001 4.868734 ACTTGGCTACTCGTGTAATAAAGC 59.131 41.667 0.00 0.17 0.00 3.51
1928 2002 3.788937 TGGCTACTCGTGTAATAAAGCC 58.211 45.455 17.44 17.44 36.27 4.35
1929 2003 3.196039 TGGCTACTCGTGTAATAAAGCCA 59.804 43.478 21.25 21.25 40.41 4.75
1930 2004 4.141801 TGGCTACTCGTGTAATAAAGCCAT 60.142 41.667 21.25 0.00 38.92 4.40
1931 2005 4.211374 GGCTACTCGTGTAATAAAGCCATG 59.789 45.833 18.75 0.00 35.98 3.66
1932 2006 4.211374 GCTACTCGTGTAATAAAGCCATGG 59.789 45.833 7.63 7.63 0.00 3.66
1933 2007 4.481368 ACTCGTGTAATAAAGCCATGGA 57.519 40.909 18.40 0.00 0.00 3.41
1934 2008 4.442706 ACTCGTGTAATAAAGCCATGGAG 58.557 43.478 18.40 0.81 0.00 3.86
1935 2009 4.161565 ACTCGTGTAATAAAGCCATGGAGA 59.838 41.667 18.40 0.00 0.00 3.71
1936 2010 4.693283 TCGTGTAATAAAGCCATGGAGAG 58.307 43.478 18.40 0.00 0.00 3.20
1937 2011 4.404394 TCGTGTAATAAAGCCATGGAGAGA 59.596 41.667 18.40 0.00 0.00 3.10
1938 2012 5.105106 TCGTGTAATAAAGCCATGGAGAGAA 60.105 40.000 18.40 0.00 0.00 2.87
1939 2013 5.584649 CGTGTAATAAAGCCATGGAGAGAAA 59.415 40.000 18.40 0.00 0.00 2.52
1940 2014 6.260936 CGTGTAATAAAGCCATGGAGAGAAAT 59.739 38.462 18.40 0.00 0.00 2.17
1941 2015 7.519008 CGTGTAATAAAGCCATGGAGAGAAATC 60.519 40.741 18.40 0.08 0.00 2.17
1942 2016 7.283127 GTGTAATAAAGCCATGGAGAGAAATCA 59.717 37.037 18.40 2.92 0.00 2.57
1943 2017 8.000709 TGTAATAAAGCCATGGAGAGAAATCAT 58.999 33.333 18.40 0.00 0.00 2.45
1944 2018 6.896021 ATAAAGCCATGGAGAGAAATCATG 57.104 37.500 18.40 0.00 38.30 3.07
1953 2027 8.865420 CATGGAGAGAAATCATGGATTATCTT 57.135 34.615 9.05 0.00 35.82 2.40
1954 2028 9.298250 CATGGAGAGAAATCATGGATTATCTTT 57.702 33.333 9.05 2.93 35.82 2.52
1955 2029 9.878737 ATGGAGAGAAATCATGGATTATCTTTT 57.121 29.630 9.05 0.00 32.26 2.27
1956 2030 9.705103 TGGAGAGAAATCATGGATTATCTTTTT 57.295 29.630 9.05 0.00 32.26 1.94
1977 2051 7.989416 TTTTTACGTGAAGAGGTGGAATTAT 57.011 32.000 0.00 0.00 0.00 1.28
1978 2052 7.605410 TTTTACGTGAAGAGGTGGAATTATC 57.395 36.000 0.00 0.00 0.00 1.75
1979 2053 6.540438 TTACGTGAAGAGGTGGAATTATCT 57.460 37.500 0.00 0.00 0.00 1.98
1980 2054 5.012328 ACGTGAAGAGGTGGAATTATCTC 57.988 43.478 0.00 0.00 0.00 2.75
1981 2055 4.045104 CGTGAAGAGGTGGAATTATCTCG 58.955 47.826 0.00 0.00 0.00 4.04
1982 2056 3.804873 GTGAAGAGGTGGAATTATCTCGC 59.195 47.826 0.00 0.00 0.00 5.03
1983 2057 3.181465 TGAAGAGGTGGAATTATCTCGCC 60.181 47.826 0.00 0.00 0.00 5.54
1984 2058 1.694696 AGAGGTGGAATTATCTCGCCC 59.305 52.381 0.00 0.00 30.88 6.13
1985 2059 0.393077 AGGTGGAATTATCTCGCCCG 59.607 55.000 0.00 0.00 30.88 6.13
1986 2060 0.602905 GGTGGAATTATCTCGCCCGG 60.603 60.000 0.00 0.00 0.00 5.73
1987 2061 1.070786 TGGAATTATCTCGCCCGGC 59.929 57.895 0.00 0.00 0.00 6.13
1988 2062 1.371558 GGAATTATCTCGCCCGGCT 59.628 57.895 8.05 0.00 0.00 5.52
1989 2063 0.670854 GGAATTATCTCGCCCGGCTC 60.671 60.000 8.05 0.00 0.00 4.70
1990 2064 0.670854 GAATTATCTCGCCCGGCTCC 60.671 60.000 8.05 0.00 0.00 4.70
1991 2065 1.407656 AATTATCTCGCCCGGCTCCA 61.408 55.000 8.05 0.00 0.00 3.86
1992 2066 1.194781 ATTATCTCGCCCGGCTCCAT 61.195 55.000 8.05 0.00 0.00 3.41
1993 2067 1.407656 TTATCTCGCCCGGCTCCATT 61.408 55.000 8.05 0.00 0.00 3.16
1994 2068 2.099652 TATCTCGCCCGGCTCCATTG 62.100 60.000 8.05 0.00 0.00 2.82
1995 2069 4.161295 CTCGCCCGGCTCCATTGA 62.161 66.667 8.05 0.00 0.00 2.57
1996 2070 3.466791 CTCGCCCGGCTCCATTGAT 62.467 63.158 8.05 0.00 0.00 2.57
1997 2071 3.282157 CGCCCGGCTCCATTGATG 61.282 66.667 8.05 0.00 0.00 3.07
1998 2072 3.599704 GCCCGGCTCCATTGATGC 61.600 66.667 0.71 0.00 0.00 3.91
1999 2073 2.908940 CCCGGCTCCATTGATGCC 60.909 66.667 0.00 9.03 42.94 4.40
2000 2074 2.124193 CCGGCTCCATTGATGCCA 60.124 61.111 16.25 0.00 46.39 4.92
2001 2075 1.753848 CCGGCTCCATTGATGCCAA 60.754 57.895 16.25 0.00 46.39 4.52
2002 2076 1.434696 CGGCTCCATTGATGCCAAC 59.565 57.895 16.25 0.00 46.39 3.77
2003 2077 1.818555 GGCTCCATTGATGCCAACC 59.181 57.895 12.78 0.00 45.46 3.77
2004 2078 1.679559 GGCTCCATTGATGCCAACCC 61.680 60.000 12.78 0.00 45.46 4.11
2005 2079 0.971959 GCTCCATTGATGCCAACCCA 60.972 55.000 0.00 0.00 34.72 4.51
2006 2080 1.784358 CTCCATTGATGCCAACCCAT 58.216 50.000 0.00 0.00 34.72 4.00
2007 2081 1.684983 CTCCATTGATGCCAACCCATC 59.315 52.381 0.00 0.00 41.51 3.51
2008 2082 1.288633 TCCATTGATGCCAACCCATCT 59.711 47.619 4.10 0.00 41.65 2.90
2009 2083 1.684983 CCATTGATGCCAACCCATCTC 59.315 52.381 4.10 0.00 41.65 2.75
2010 2084 1.684983 CATTGATGCCAACCCATCTCC 59.315 52.381 4.10 0.00 41.65 3.71
2011 2085 0.033208 TTGATGCCAACCCATCTCCC 60.033 55.000 4.10 0.00 41.65 4.30
2012 2086 0.920763 TGATGCCAACCCATCTCCCT 60.921 55.000 4.10 0.00 41.65 4.20
2013 2087 1.140312 GATGCCAACCCATCTCCCTA 58.860 55.000 0.00 0.00 38.80 3.53
2014 2088 1.707427 GATGCCAACCCATCTCCCTAT 59.293 52.381 0.00 0.00 38.80 2.57
2015 2089 2.505672 TGCCAACCCATCTCCCTATA 57.494 50.000 0.00 0.00 0.00 1.31
2016 2090 2.338809 TGCCAACCCATCTCCCTATAG 58.661 52.381 0.00 0.00 0.00 1.31
2017 2091 2.090210 TGCCAACCCATCTCCCTATAGA 60.090 50.000 0.00 0.00 0.00 1.98
2018 2092 2.303311 GCCAACCCATCTCCCTATAGAC 59.697 54.545 0.00 0.00 0.00 2.59
2019 2093 3.587498 CCAACCCATCTCCCTATAGACA 58.413 50.000 0.00 0.00 0.00 3.41
2020 2094 3.580458 CCAACCCATCTCCCTATAGACAG 59.420 52.174 0.00 0.00 0.00 3.51
2021 2095 2.896039 ACCCATCTCCCTATAGACAGC 58.104 52.381 0.00 0.00 0.00 4.40
2022 2096 1.821753 CCCATCTCCCTATAGACAGCG 59.178 57.143 0.00 0.00 0.00 5.18
2023 2097 2.555448 CCCATCTCCCTATAGACAGCGA 60.555 54.545 0.00 0.00 0.00 4.93
2024 2098 3.360867 CCATCTCCCTATAGACAGCGAT 58.639 50.000 0.00 0.00 0.00 4.58
2025 2099 3.766591 CCATCTCCCTATAGACAGCGATT 59.233 47.826 0.00 0.00 0.00 3.34
2026 2100 4.381398 CCATCTCCCTATAGACAGCGATTG 60.381 50.000 0.00 0.00 0.00 2.67
2027 2101 2.558795 TCTCCCTATAGACAGCGATTGC 59.441 50.000 0.00 0.00 43.24 3.56
2028 2102 2.297315 CTCCCTATAGACAGCGATTGCA 59.703 50.000 7.90 0.00 46.23 4.08
2029 2103 2.035961 TCCCTATAGACAGCGATTGCAC 59.964 50.000 7.90 0.00 46.23 4.57
2030 2104 2.224042 CCCTATAGACAGCGATTGCACA 60.224 50.000 7.90 0.00 46.23 4.57
2031 2105 3.457234 CCTATAGACAGCGATTGCACAA 58.543 45.455 7.90 0.00 46.23 3.33
2032 2106 3.492383 CCTATAGACAGCGATTGCACAAG 59.508 47.826 7.90 0.00 46.23 3.16
2033 2107 2.741759 TAGACAGCGATTGCACAAGA 57.258 45.000 7.90 0.00 46.23 3.02
2034 2108 1.436600 AGACAGCGATTGCACAAGAG 58.563 50.000 7.90 0.00 46.23 2.85
2035 2109 0.179205 GACAGCGATTGCACAAGAGC 60.179 55.000 7.90 5.14 46.23 4.09
2036 2110 1.136147 CAGCGATTGCACAAGAGCC 59.864 57.895 7.90 0.00 46.23 4.70
2037 2111 2.099062 GCGATTGCACAAGAGCCG 59.901 61.111 0.00 0.00 42.15 5.52
2038 2112 2.787249 CGATTGCACAAGAGCCGG 59.213 61.111 0.00 0.00 0.00 6.13
2039 2113 2.034879 CGATTGCACAAGAGCCGGT 61.035 57.895 1.90 0.00 0.00 5.28
2040 2114 1.503542 GATTGCACAAGAGCCGGTG 59.496 57.895 1.90 0.00 38.05 4.94
2209 2312 1.540267 CCACCGCCTGTAAAATTGGA 58.460 50.000 0.00 0.00 0.00 3.53
2360 2464 2.364317 CTCTTCCTCTCGCCCCCA 60.364 66.667 0.00 0.00 0.00 4.96
2415 2520 2.041928 CCTCTGGCTCCTCCCCTT 59.958 66.667 0.00 0.00 0.00 3.95
2483 2591 1.689233 CCTCCTCCCCACGGAATCA 60.689 63.158 0.00 0.00 37.86 2.57
2642 2762 3.011517 GCTCCCTCCTCTTGGCCA 61.012 66.667 0.00 0.00 0.00 5.36
2652 2772 3.186283 TCCTCTTGGCCAAGGTAACATA 58.814 45.455 38.60 20.65 38.88 2.29
2684 2804 1.302832 GCGATGGATGTGGGGATCC 60.303 63.158 1.92 1.92 42.23 3.36
2690 2810 1.216990 GGATGTGGGGATCCTGAACT 58.783 55.000 12.58 0.00 39.20 3.01
2786 2906 0.457853 TGTCGGCGTGCTGATCTTAC 60.458 55.000 6.85 0.00 33.49 2.34
2787 2907 0.457853 GTCGGCGTGCTGATCTTACA 60.458 55.000 6.85 0.00 33.49 2.41
2788 2908 0.457853 TCGGCGTGCTGATCTTACAC 60.458 55.000 6.85 0.00 0.00 2.90
2789 2909 0.458543 CGGCGTGCTGATCTTACACT 60.459 55.000 0.00 0.00 32.07 3.55
2790 2910 1.202256 CGGCGTGCTGATCTTACACTA 60.202 52.381 0.00 0.00 32.07 2.74
2791 2911 2.464865 GGCGTGCTGATCTTACACTAG 58.535 52.381 10.27 0.00 32.07 2.57
2792 2912 2.159226 GGCGTGCTGATCTTACACTAGT 60.159 50.000 10.27 0.00 32.07 2.57
2793 2913 2.854777 GCGTGCTGATCTTACACTAGTG 59.145 50.000 21.44 21.44 32.07 2.74
2794 2914 2.854777 CGTGCTGATCTTACACTAGTGC 59.145 50.000 22.90 5.95 32.07 4.40
2795 2915 3.673323 CGTGCTGATCTTACACTAGTGCA 60.673 47.826 22.90 7.33 32.07 4.57
2796 2916 3.862267 GTGCTGATCTTACACTAGTGCAG 59.138 47.826 22.90 19.36 0.00 4.41
2797 2917 3.763897 TGCTGATCTTACACTAGTGCAGA 59.236 43.478 22.90 22.22 0.00 4.26
2798 2918 4.220602 TGCTGATCTTACACTAGTGCAGAA 59.779 41.667 22.90 12.06 30.06 3.02
2799 2919 4.564769 GCTGATCTTACACTAGTGCAGAAC 59.435 45.833 22.90 20.39 30.06 3.01
2800 2920 5.073311 TGATCTTACACTAGTGCAGAACC 57.927 43.478 22.90 17.74 30.06 3.62
2801 2921 3.570926 TCTTACACTAGTGCAGAACCG 57.429 47.619 22.90 4.89 0.00 4.44
2802 2922 2.230508 TCTTACACTAGTGCAGAACCGG 59.769 50.000 22.90 0.00 0.00 5.28
2803 2923 0.892755 TACACTAGTGCAGAACCGGG 59.107 55.000 22.90 0.00 0.00 5.73
2804 2924 1.741770 CACTAGTGCAGAACCGGGC 60.742 63.158 10.54 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.134175 CCGTGGTTGCTTTTGTTCTGT 59.866 47.619 0.00 0.00 0.00 3.41
2 3 1.470051 ACCGTGGTTGCTTTTGTTCT 58.530 45.000 0.00 0.00 0.00 3.01
3 4 1.923864 CAACCGTGGTTGCTTTTGTTC 59.076 47.619 18.06 0.00 46.92 3.18
5 6 3.731295 CAACCGTGGTTGCTTTTGT 57.269 47.368 18.06 0.00 46.92 2.83
13 14 5.349543 GTCTTATAACGATTCAACCGTGGTT 59.650 40.000 0.00 0.00 40.44 3.67
14 15 4.866486 GTCTTATAACGATTCAACCGTGGT 59.134 41.667 0.00 0.00 40.44 4.16
15 16 4.865925 TGTCTTATAACGATTCAACCGTGG 59.134 41.667 0.00 0.00 40.44 4.94
16 17 6.583912 ATGTCTTATAACGATTCAACCGTG 57.416 37.500 0.00 0.00 40.44 4.94
17 18 8.706492 TTTATGTCTTATAACGATTCAACCGT 57.294 30.769 0.00 0.00 42.61 4.83
18 19 9.976255 TTTTTATGTCTTATAACGATTCAACCG 57.024 29.630 0.00 0.00 0.00 4.44
42 43 9.858247 CGTTTATGCGTTCTATACATGTTATTT 57.142 29.630 2.30 0.00 0.00 1.40
43 44 9.037737 ACGTTTATGCGTTCTATACATGTTATT 57.962 29.630 2.30 0.00 43.04 1.40
44 45 8.583810 ACGTTTATGCGTTCTATACATGTTAT 57.416 30.769 2.30 0.00 43.04 1.89
45 46 7.701501 TGACGTTTATGCGTTCTATACATGTTA 59.298 33.333 2.30 0.00 45.79 2.41
46 47 6.532302 TGACGTTTATGCGTTCTATACATGTT 59.468 34.615 2.30 0.00 45.79 2.71
47 48 6.037726 TGACGTTTATGCGTTCTATACATGT 58.962 36.000 2.69 2.69 45.79 3.21
48 49 6.505039 TGACGTTTATGCGTTCTATACATG 57.495 37.500 0.00 0.00 45.79 3.21
49 50 6.921307 TCATGACGTTTATGCGTTCTATACAT 59.079 34.615 8.41 0.00 45.79 2.29
50 51 6.267070 TCATGACGTTTATGCGTTCTATACA 58.733 36.000 8.41 0.00 45.79 2.29
51 52 6.742999 TCATGACGTTTATGCGTTCTATAC 57.257 37.500 8.41 0.00 45.79 1.47
52 53 7.539710 GGTATCATGACGTTTATGCGTTCTATA 59.460 37.037 0.00 0.10 45.79 1.31
53 54 6.365247 GGTATCATGACGTTTATGCGTTCTAT 59.635 38.462 0.00 0.83 45.79 1.98
54 55 5.688621 GGTATCATGACGTTTATGCGTTCTA 59.311 40.000 0.00 0.00 45.79 2.10
55 56 4.506654 GGTATCATGACGTTTATGCGTTCT 59.493 41.667 0.00 0.00 45.79 3.01
56 57 4.269123 TGGTATCATGACGTTTATGCGTTC 59.731 41.667 0.00 1.67 45.79 3.95
57 58 4.185394 TGGTATCATGACGTTTATGCGTT 58.815 39.130 0.00 1.09 45.79 4.84
58 59 4.447724 GATGGTATCATGACGTTTATGCGT 59.552 41.667 0.00 0.00 39.77 5.24
59 60 4.432892 CGATGGTATCATGACGTTTATGCG 60.433 45.833 0.00 0.00 32.98 4.73
60 61 4.447724 ACGATGGTATCATGACGTTTATGC 59.552 41.667 0.00 0.00 32.32 3.14
61 62 5.689961 TGACGATGGTATCATGACGTTTATG 59.310 40.000 0.00 7.26 35.10 1.90
62 63 5.838529 TGACGATGGTATCATGACGTTTAT 58.161 37.500 0.00 0.00 35.10 1.40
63 64 5.251601 TGACGATGGTATCATGACGTTTA 57.748 39.130 0.00 0.00 35.10 2.01
64 65 4.118093 TGACGATGGTATCATGACGTTT 57.882 40.909 0.00 0.00 35.10 3.60
65 66 3.793797 TGACGATGGTATCATGACGTT 57.206 42.857 0.00 0.00 35.10 3.99
66 67 3.380320 TCTTGACGATGGTATCATGACGT 59.620 43.478 6.51 6.51 36.81 4.34
67 68 3.731216 GTCTTGACGATGGTATCATGACG 59.269 47.826 0.00 0.00 39.06 4.35
68 69 4.682787 TGTCTTGACGATGGTATCATGAC 58.317 43.478 0.00 11.34 44.38 3.06
69 70 4.402474 ACTGTCTTGACGATGGTATCATGA 59.598 41.667 0.00 0.00 32.98 3.07
70 71 4.686972 ACTGTCTTGACGATGGTATCATG 58.313 43.478 0.00 0.00 32.98 3.07
71 72 4.646945 AGACTGTCTTGACGATGGTATCAT 59.353 41.667 4.06 0.00 36.09 2.45
72 73 4.017126 AGACTGTCTTGACGATGGTATCA 58.983 43.478 4.06 0.00 0.00 2.15
73 74 4.355437 CAGACTGTCTTGACGATGGTATC 58.645 47.826 7.77 0.00 0.00 2.24
74 75 3.131223 CCAGACTGTCTTGACGATGGTAT 59.869 47.826 7.77 0.00 0.00 2.73
75 76 2.492088 CCAGACTGTCTTGACGATGGTA 59.508 50.000 7.77 0.00 0.00 3.25
76 77 1.273606 CCAGACTGTCTTGACGATGGT 59.726 52.381 7.77 0.00 0.00 3.55
77 78 1.546029 TCCAGACTGTCTTGACGATGG 59.454 52.381 7.77 5.64 0.00 3.51
78 79 2.029918 TGTCCAGACTGTCTTGACGATG 60.030 50.000 26.98 9.83 40.77 3.84
79 80 2.239400 TGTCCAGACTGTCTTGACGAT 58.761 47.619 26.98 0.00 40.77 3.73
100 101 1.740380 CGGCAATCACGATGAGACCTT 60.740 52.381 0.00 0.00 0.00 3.50
105 106 1.203928 GTCTCGGCAATCACGATGAG 58.796 55.000 0.00 0.00 39.89 2.90
114 115 2.756400 TTGGCTGGTCTCGGCAAT 59.244 55.556 0.00 0.00 46.76 3.56
117 118 1.372087 CTTCATTGGCTGGTCTCGGC 61.372 60.000 0.00 0.00 44.31 5.54
120 121 2.783135 TGTTCTTCATTGGCTGGTCTC 58.217 47.619 0.00 0.00 0.00 3.36
126 127 6.209192 TGATGTTATGTTGTTCTTCATTGGCT 59.791 34.615 0.00 0.00 0.00 4.75
128 129 8.084073 ACTTGATGTTATGTTGTTCTTCATTGG 58.916 33.333 0.00 0.00 0.00 3.16
139 140 9.265938 CGATGTTTTCTACTTGATGTTATGTTG 57.734 33.333 0.00 0.00 0.00 3.33
144 145 8.492748 GTTGTCGATGTTTTCTACTTGATGTTA 58.507 33.333 0.00 0.00 0.00 2.41
158 159 4.317558 CGTCGTTACTTGTTGTCGATGTTT 60.318 41.667 0.00 0.00 34.32 2.83
162 163 1.717645 GCGTCGTTACTTGTTGTCGAT 59.282 47.619 0.00 0.00 33.35 3.59
163 164 1.122849 GCGTCGTTACTTGTTGTCGA 58.877 50.000 0.00 0.00 0.00 4.20
195 196 2.775960 ACCTTTATTAGCCGGGCTTAGT 59.224 45.455 29.02 15.52 40.44 2.24
207 208 9.581289 TGAAAATTCTTGTCCTGACCTTTATTA 57.419 29.630 0.00 0.00 0.00 0.98
215 216 4.083802 CGGAGTGAAAATTCTTGTCCTGAC 60.084 45.833 0.00 0.00 0.00 3.51
233 234 2.046314 CCGTTTCATGCCCGGAGT 60.046 61.111 0.73 0.00 44.41 3.85
250 251 2.744202 ACCAAGATGTCGATTTGAGCAC 59.256 45.455 0.00 0.00 0.00 4.40
256 257 4.196626 TCCGTTACCAAGATGTCGATTT 57.803 40.909 0.00 0.00 0.00 2.17
276 277 1.480219 GATGCAACCGTCGGACGATC 61.480 60.000 30.33 19.96 46.05 3.69
279 280 3.186047 GGATGCAACCGTCGGACG 61.186 66.667 22.88 22.88 42.11 4.79
287 288 1.538419 GGAGTACTAGCGGATGCAACC 60.538 57.143 2.19 2.19 46.23 3.77
298 299 4.819105 TTTGACCCACATGGAGTACTAG 57.181 45.455 0.00 0.00 37.39 2.57
316 318 3.685756 CCCAATTTGCTAGTGCCATTTTG 59.314 43.478 0.00 0.00 38.71 2.44
344 346 1.691434 CTCATGCTCTAAGGGAGGGAC 59.309 57.143 0.00 0.00 42.08 4.46
349 351 1.008327 TCCACCTCATGCTCTAAGGGA 59.992 52.381 2.73 0.00 34.31 4.20
381 383 7.280356 GGATACATTCATACATACCCATACCC 58.720 42.308 0.00 0.00 0.00 3.69
382 384 7.127339 AGGGATACATTCATACATACCCATACC 59.873 40.741 0.00 0.00 37.49 2.73
383 385 8.090788 AGGGATACATTCATACATACCCATAC 57.909 38.462 0.00 0.00 37.49 2.39
384 386 8.694171 AAGGGATACATTCATACATACCCATA 57.306 34.615 0.00 0.00 33.63 2.74
385 387 7.588866 AAGGGATACATTCATACATACCCAT 57.411 36.000 0.00 0.00 33.63 4.00
386 388 8.694171 ATAAGGGATACATTCATACATACCCA 57.306 34.615 0.00 0.00 41.52 4.51
387 389 8.211629 GGATAAGGGATACATTCATACATACCC 58.788 40.741 0.00 0.00 41.52 3.69
440 442 5.828299 TTTTTCCGGAATTATCGATGCTT 57.172 34.783 19.62 0.70 0.00 3.91
461 463 6.598064 CCGTAAGACCTGGTCTCATAATTTTT 59.402 38.462 28.46 12.75 42.59 1.94
462 464 6.113411 CCGTAAGACCTGGTCTCATAATTTT 58.887 40.000 28.46 13.45 42.59 1.82
463 465 5.396436 CCCGTAAGACCTGGTCTCATAATTT 60.396 44.000 28.46 14.16 42.59 1.82
464 466 4.101119 CCCGTAAGACCTGGTCTCATAATT 59.899 45.833 28.46 14.86 42.59 1.40
465 467 3.641906 CCCGTAAGACCTGGTCTCATAAT 59.358 47.826 28.46 15.56 42.59 1.28
466 468 3.028850 CCCGTAAGACCTGGTCTCATAA 58.971 50.000 28.46 12.50 42.59 1.90
467 469 2.024655 ACCCGTAAGACCTGGTCTCATA 60.025 50.000 28.46 15.96 42.59 2.15
468 470 1.273098 ACCCGTAAGACCTGGTCTCAT 60.273 52.381 28.46 17.00 42.59 2.90
469 471 0.113776 ACCCGTAAGACCTGGTCTCA 59.886 55.000 28.46 13.27 42.59 3.27
470 472 1.264295 AACCCGTAAGACCTGGTCTC 58.736 55.000 28.46 16.42 42.59 3.36
471 473 2.225217 ACTAACCCGTAAGACCTGGTCT 60.225 50.000 23.49 23.49 45.64 3.85
472 474 2.174360 ACTAACCCGTAAGACCTGGTC 58.826 52.381 19.20 19.20 43.02 4.02
473 475 2.315720 ACTAACCCGTAAGACCTGGT 57.684 50.000 0.00 0.00 43.02 4.00
474 476 2.692041 CCTACTAACCCGTAAGACCTGG 59.308 54.545 0.00 0.00 43.02 4.45
475 477 3.129988 CACCTACTAACCCGTAAGACCTG 59.870 52.174 0.00 0.00 43.02 4.00
476 478 3.010584 TCACCTACTAACCCGTAAGACCT 59.989 47.826 0.00 0.00 43.02 3.85
477 479 3.356290 TCACCTACTAACCCGTAAGACC 58.644 50.000 0.00 0.00 43.02 3.85
478 480 4.095632 GTCTCACCTACTAACCCGTAAGAC 59.904 50.000 0.00 0.00 43.02 3.01
479 481 4.265073 GTCTCACCTACTAACCCGTAAGA 58.735 47.826 0.00 0.00 43.02 2.10
480 482 3.379688 GGTCTCACCTACTAACCCGTAAG 59.620 52.174 0.00 0.00 34.73 2.34
481 483 3.356290 GGTCTCACCTACTAACCCGTAA 58.644 50.000 0.00 0.00 34.73 3.18
482 484 2.357154 GGGTCTCACCTACTAACCCGTA 60.357 54.545 0.00 0.00 40.19 4.02
483 485 1.618074 GGGTCTCACCTACTAACCCGT 60.618 57.143 0.00 0.00 40.19 5.28
484 486 1.109609 GGGTCTCACCTACTAACCCG 58.890 60.000 0.00 0.00 40.19 5.28
486 488 2.699321 GGATGGGTCTCACCTACTAACC 59.301 54.545 0.00 0.00 38.64 2.85
487 489 3.385111 CAGGATGGGTCTCACCTACTAAC 59.615 52.174 0.00 0.00 38.64 2.34
488 490 3.271225 TCAGGATGGGTCTCACCTACTAA 59.729 47.826 0.00 0.00 38.64 2.24
489 491 2.856864 TCAGGATGGGTCTCACCTACTA 59.143 50.000 0.00 0.00 38.64 1.82
490 492 1.646447 TCAGGATGGGTCTCACCTACT 59.354 52.381 0.00 0.00 38.64 2.57
491 493 2.160721 TCAGGATGGGTCTCACCTAC 57.839 55.000 0.00 0.00 38.64 3.18
492 494 2.682594 CATCAGGATGGGTCTCACCTA 58.317 52.381 1.25 0.00 38.64 3.08
493 495 1.504912 CATCAGGATGGGTCTCACCT 58.495 55.000 1.25 0.00 38.64 4.00
506 508 1.091771 GCCACGTGTCATCCATCAGG 61.092 60.000 15.65 0.00 0.00 3.86
507 509 0.391528 TGCCACGTGTCATCCATCAG 60.392 55.000 15.65 0.00 0.00 2.90
508 510 0.252761 ATGCCACGTGTCATCCATCA 59.747 50.000 15.65 0.00 0.00 3.07
509 511 1.331756 GAATGCCACGTGTCATCCATC 59.668 52.381 13.12 3.25 0.00 3.51
510 512 1.339920 TGAATGCCACGTGTCATCCAT 60.340 47.619 13.12 0.00 0.00 3.41
511 513 0.036022 TGAATGCCACGTGTCATCCA 59.964 50.000 13.12 2.86 0.00 3.41
512 514 1.064505 CATGAATGCCACGTGTCATCC 59.935 52.381 13.12 0.00 0.00 3.51
513 515 2.463553 CATGAATGCCACGTGTCATC 57.536 50.000 13.12 7.23 0.00 2.92
525 527 6.772770 TTCACAAATCACAAAGCATGAATG 57.227 33.333 0.00 0.00 0.00 2.67
526 528 6.128391 GCATTCACAAATCACAAAGCATGAAT 60.128 34.615 0.00 0.00 36.28 2.57
527 529 5.177881 GCATTCACAAATCACAAAGCATGAA 59.822 36.000 0.00 0.00 0.00 2.57
528 530 4.687018 GCATTCACAAATCACAAAGCATGA 59.313 37.500 0.00 0.00 0.00 3.07
529 531 4.142988 GGCATTCACAAATCACAAAGCATG 60.143 41.667 0.00 0.00 0.00 4.06
530 532 3.998341 GGCATTCACAAATCACAAAGCAT 59.002 39.130 0.00 0.00 0.00 3.79
531 533 3.181468 TGGCATTCACAAATCACAAAGCA 60.181 39.130 0.00 0.00 0.00 3.91
532 534 3.184986 GTGGCATTCACAAATCACAAAGC 59.815 43.478 0.00 0.00 45.39 3.51
533 535 3.426191 CGTGGCATTCACAAATCACAAAG 59.574 43.478 0.00 0.00 46.36 2.77
534 536 3.181482 ACGTGGCATTCACAAATCACAAA 60.181 39.130 0.00 0.00 46.36 2.83
535 537 2.360483 ACGTGGCATTCACAAATCACAA 59.640 40.909 0.00 0.00 46.36 3.33
536 538 1.952990 ACGTGGCATTCACAAATCACA 59.047 42.857 0.00 0.00 46.36 3.58
537 539 2.287547 ACACGTGGCATTCACAAATCAC 60.288 45.455 21.57 0.00 46.36 3.06
538 540 1.952990 ACACGTGGCATTCACAAATCA 59.047 42.857 21.57 0.00 46.36 2.57
539 541 2.031245 TGACACGTGGCATTCACAAATC 60.031 45.455 23.03 3.54 46.36 2.17
540 542 1.952990 TGACACGTGGCATTCACAAAT 59.047 42.857 23.03 0.00 46.36 2.32
541 543 1.383523 TGACACGTGGCATTCACAAA 58.616 45.000 23.03 0.00 46.36 2.83
542 544 1.535028 GATGACACGTGGCATTCACAA 59.465 47.619 36.07 8.22 45.42 3.33
543 545 1.155889 GATGACACGTGGCATTCACA 58.844 50.000 36.07 9.07 45.42 3.58
544 546 0.447801 GGATGACACGTGGCATTCAC 59.552 55.000 36.07 24.74 45.42 3.18
545 547 0.036022 TGGATGACACGTGGCATTCA 59.964 50.000 36.64 36.64 46.54 2.57
546 548 1.331756 GATGGATGACACGTGGCATTC 59.668 52.381 36.07 34.16 45.42 2.67
547 549 1.339920 TGATGGATGACACGTGGCATT 60.340 47.619 36.07 22.11 45.42 3.56
549 551 0.391528 CTGATGGATGACACGTGGCA 60.392 55.000 29.28 29.28 37.54 4.92
550 552 0.108186 TCTGATGGATGACACGTGGC 60.108 55.000 21.57 19.24 0.00 5.01
551 553 2.385013 TTCTGATGGATGACACGTGG 57.615 50.000 21.57 1.66 0.00 4.94
552 554 2.537214 CGATTCTGATGGATGACACGTG 59.463 50.000 15.48 15.48 0.00 4.49
553 555 2.481969 CCGATTCTGATGGATGACACGT 60.482 50.000 0.00 0.00 0.00 4.49
554 556 2.130395 CCGATTCTGATGGATGACACG 58.870 52.381 0.00 0.00 0.00 4.49
555 557 3.126831 GACCGATTCTGATGGATGACAC 58.873 50.000 0.00 0.00 0.00 3.67
556 558 3.033909 AGACCGATTCTGATGGATGACA 58.966 45.455 0.00 0.00 31.12 3.58
557 559 3.068732 TGAGACCGATTCTGATGGATGAC 59.931 47.826 0.00 0.00 33.22 3.06
558 560 3.299503 TGAGACCGATTCTGATGGATGA 58.700 45.455 0.00 0.00 33.22 2.92
559 561 3.740631 TGAGACCGATTCTGATGGATG 57.259 47.619 0.00 0.00 33.22 3.51
560 562 3.260380 GGATGAGACCGATTCTGATGGAT 59.740 47.826 0.00 0.00 33.22 3.41
561 563 2.630098 GGATGAGACCGATTCTGATGGA 59.370 50.000 0.00 0.00 33.22 3.41
562 564 3.037431 GGATGAGACCGATTCTGATGG 57.963 52.381 0.00 0.00 33.22 3.51
572 574 4.216472 TCTCATAGAATTCGGATGAGACCG 59.784 45.833 31.61 19.06 46.68 4.79
573 575 5.713792 TCTCATAGAATTCGGATGAGACC 57.286 43.478 31.61 0.06 46.68 3.85
576 578 5.468592 CAGGTCTCATAGAATTCGGATGAG 58.531 45.833 29.43 29.43 45.27 2.90
577 579 4.281941 CCAGGTCTCATAGAATTCGGATGA 59.718 45.833 19.08 19.08 0.00 2.92
578 580 4.039730 ACCAGGTCTCATAGAATTCGGATG 59.960 45.833 14.09 14.09 0.00 3.51
579 581 4.227197 ACCAGGTCTCATAGAATTCGGAT 58.773 43.478 0.00 0.00 0.00 4.18
580 582 3.637229 GACCAGGTCTCATAGAATTCGGA 59.363 47.826 12.94 0.00 0.00 4.55
581 583 3.639094 AGACCAGGTCTCATAGAATTCGG 59.361 47.826 17.31 0.00 38.71 4.30
582 584 4.927978 AGACCAGGTCTCATAGAATTCG 57.072 45.455 17.31 0.00 38.71 3.34
631 633 6.201064 CGTGGACGGTTGGTACTAGAGTAC 62.201 54.167 10.78 10.78 41.62 2.73
709 711 2.439701 TCCAGGTAGGCGTCCTCG 60.440 66.667 1.46 0.00 37.29 4.63
725 727 1.824852 GGTGGGAAATGGGATTGTGTC 59.175 52.381 0.00 0.00 0.00 3.67
730 732 1.273724 TGCATGGTGGGAAATGGGATT 60.274 47.619 0.00 0.00 0.00 3.01
731 733 0.339162 TGCATGGTGGGAAATGGGAT 59.661 50.000 0.00 0.00 0.00 3.85
732 734 0.115944 TTGCATGGTGGGAAATGGGA 59.884 50.000 0.00 0.00 0.00 4.37
735 737 2.675889 GCTTCTTGCATGGTGGGAAATG 60.676 50.000 0.00 0.00 42.31 2.32
736 738 1.551883 GCTTCTTGCATGGTGGGAAAT 59.448 47.619 0.00 0.00 42.31 2.17
737 739 0.968405 GCTTCTTGCATGGTGGGAAA 59.032 50.000 0.00 0.00 42.31 3.13
776 778 4.980590 TCCATTGAATAATGTGTGAACGC 58.019 39.130 0.00 0.00 41.68 4.84
777 779 5.512788 GCTTCCATTGAATAATGTGTGAACG 59.487 40.000 0.00 0.00 41.68 3.95
821 825 3.490590 CCGAGATCTGAGTCAATGGTGAG 60.491 52.174 0.00 0.00 33.27 3.51
851 855 1.227380 GCTGTGATGTAGAGGCGGG 60.227 63.158 0.00 0.00 0.00 6.13
860 864 0.166597 CGTTTGCGATGCTGTGATGT 59.833 50.000 0.00 0.00 41.33 3.06
872 876 4.667504 CACATGTGATATGATTCGTTTGCG 59.332 41.667 21.64 0.00 39.92 4.85
897 901 8.230486 GCTACAATTCAGTATAAATAATGCGCT 58.770 33.333 9.73 0.00 0.00 5.92
899 903 8.503196 TGGCTACAATTCAGTATAAATAATGCG 58.497 33.333 0.00 0.00 0.00 4.73
924 928 2.681706 AGTCGTTGAGCAGATCTGTTG 58.318 47.619 23.38 6.45 0.00 3.33
968 1027 3.895232 TTGGGATAGCTCTGTCTGTTC 57.105 47.619 0.00 0.00 0.00 3.18
1008 1067 0.813210 GCAGCTTCAGATCCCCTTCG 60.813 60.000 0.00 0.00 0.00 3.79
1152 1211 4.081050 GGCACCTTCTTGTGGACC 57.919 61.111 0.00 0.00 36.73 4.46
1339 1398 3.438087 CAGAGCAGGAAAATACACACTGG 59.562 47.826 0.00 0.00 0.00 4.00
1340 1399 4.318332 TCAGAGCAGGAAAATACACACTG 58.682 43.478 0.00 0.00 0.00 3.66
1341 1400 4.623932 TCAGAGCAGGAAAATACACACT 57.376 40.909 0.00 0.00 0.00 3.55
1342 1401 5.689383 TTTCAGAGCAGGAAAATACACAC 57.311 39.130 0.00 0.00 31.72 3.82
1348 1407 2.165030 CCGCATTTCAGAGCAGGAAAAT 59.835 45.455 2.30 0.00 37.74 1.82
1395 1469 2.234414 AGAGCAGAGCAAGAAGAAGAGG 59.766 50.000 0.00 0.00 0.00 3.69
1399 1473 1.071228 TGCAGAGCAGAGCAAGAAGAA 59.929 47.619 0.00 0.00 37.90 2.52
1789 1863 2.820037 GTCTAGTTGGCAGGCGGC 60.820 66.667 0.00 0.00 43.74 6.53
1814 1888 5.091261 AGTGAACTGAACTGAACTGAACT 57.909 39.130 0.00 0.00 0.00 3.01
1815 1889 4.271291 GGAGTGAACTGAACTGAACTGAAC 59.729 45.833 0.00 0.00 0.00 3.18
1816 1890 4.081142 TGGAGTGAACTGAACTGAACTGAA 60.081 41.667 0.00 0.00 0.00 3.02
1817 1891 3.450817 TGGAGTGAACTGAACTGAACTGA 59.549 43.478 0.00 0.00 0.00 3.41
1818 1892 3.797039 TGGAGTGAACTGAACTGAACTG 58.203 45.455 0.00 0.00 0.00 3.16
1819 1893 4.080863 ACTTGGAGTGAACTGAACTGAACT 60.081 41.667 0.00 0.00 0.00 3.01
1820 1894 4.192317 ACTTGGAGTGAACTGAACTGAAC 58.808 43.478 0.00 0.00 0.00 3.18
1821 1895 4.487714 ACTTGGAGTGAACTGAACTGAA 57.512 40.909 0.00 0.00 0.00 3.02
1822 1896 4.649674 ACTACTTGGAGTGAACTGAACTGA 59.350 41.667 0.00 0.00 0.00 3.41
1823 1897 4.950050 ACTACTTGGAGTGAACTGAACTG 58.050 43.478 0.00 0.00 0.00 3.16
1824 1898 5.279056 GCTACTACTTGGAGTGAACTGAACT 60.279 44.000 0.00 0.00 0.00 3.01
1825 1899 4.924462 GCTACTACTTGGAGTGAACTGAAC 59.076 45.833 0.00 0.00 0.00 3.18
1826 1900 4.587262 TGCTACTACTTGGAGTGAACTGAA 59.413 41.667 0.00 0.00 0.00 3.02
1827 1901 4.149598 TGCTACTACTTGGAGTGAACTGA 58.850 43.478 0.00 0.00 0.00 3.41
1828 1902 4.021894 ACTGCTACTACTTGGAGTGAACTG 60.022 45.833 0.00 0.00 33.70 3.16
1829 1903 4.153411 ACTGCTACTACTTGGAGTGAACT 58.847 43.478 0.00 0.00 33.70 3.01
1830 1904 4.522722 ACTGCTACTACTTGGAGTGAAC 57.477 45.455 0.00 0.00 33.70 3.18
1834 1908 2.494073 GAGCACTGCTACTACTTGGAGT 59.506 50.000 2.71 0.00 39.88 3.85
1835 1909 2.493675 TGAGCACTGCTACTACTTGGAG 59.506 50.000 2.71 0.00 39.88 3.86
1836 1910 2.525368 TGAGCACTGCTACTACTTGGA 58.475 47.619 2.71 0.00 39.88 3.53
1837 1911 3.452474 GATGAGCACTGCTACTACTTGG 58.548 50.000 2.71 0.00 39.88 3.61
1838 1912 3.111838 CGATGAGCACTGCTACTACTTG 58.888 50.000 2.71 0.00 39.88 3.16
1839 1913 2.755655 ACGATGAGCACTGCTACTACTT 59.244 45.455 2.71 0.00 39.88 2.24
1840 1914 2.098280 CACGATGAGCACTGCTACTACT 59.902 50.000 2.71 0.00 39.88 2.57
1841 1915 2.455032 CACGATGAGCACTGCTACTAC 58.545 52.381 2.71 0.00 39.88 2.73
1842 1916 1.405463 CCACGATGAGCACTGCTACTA 59.595 52.381 2.71 0.00 39.88 1.82
1843 1917 0.174389 CCACGATGAGCACTGCTACT 59.826 55.000 2.71 0.00 39.88 2.57
1844 1918 0.173481 TCCACGATGAGCACTGCTAC 59.827 55.000 2.71 0.00 39.88 3.58
1845 1919 0.894835 TTCCACGATGAGCACTGCTA 59.105 50.000 2.71 0.00 39.88 3.49
1846 1920 0.671781 GTTCCACGATGAGCACTGCT 60.672 55.000 2.22 2.22 43.88 4.24
1847 1921 0.671781 AGTTCCACGATGAGCACTGC 60.672 55.000 0.00 0.00 0.00 4.40
1848 1922 1.073964 CAGTTCCACGATGAGCACTG 58.926 55.000 0.00 0.00 0.00 3.66
1849 1923 0.681733 ACAGTTCCACGATGAGCACT 59.318 50.000 0.00 0.00 0.00 4.40
1850 1924 0.792640 CACAGTTCCACGATGAGCAC 59.207 55.000 0.00 0.00 0.00 4.40
1851 1925 0.392706 ACACAGTTCCACGATGAGCA 59.607 50.000 0.00 0.00 0.00 4.26
1852 1926 1.071605 GACACAGTTCCACGATGAGC 58.928 55.000 0.00 0.00 0.00 4.26
1853 1927 1.340658 CGACACAGTTCCACGATGAG 58.659 55.000 0.00 0.00 0.00 2.90
1854 1928 0.666274 GCGACACAGTTCCACGATGA 60.666 55.000 0.00 0.00 0.00 2.92
1855 1929 1.781555 GCGACACAGTTCCACGATG 59.218 57.895 0.00 0.00 0.00 3.84
1856 1930 1.733041 CGCGACACAGTTCCACGAT 60.733 57.895 0.00 0.00 0.00 3.73
1857 1931 2.339100 TTCGCGACACAGTTCCACGA 62.339 55.000 9.15 0.00 0.00 4.35
1858 1932 1.282248 ATTCGCGACACAGTTCCACG 61.282 55.000 9.15 0.00 0.00 4.94
1859 1933 0.438830 GATTCGCGACACAGTTCCAC 59.561 55.000 9.15 0.00 0.00 4.02
1860 1934 1.006825 CGATTCGCGACACAGTTCCA 61.007 55.000 9.15 0.00 44.57 3.53
1861 1935 1.683790 CCGATTCGCGACACAGTTCC 61.684 60.000 9.15 0.00 44.57 3.62
1862 1936 1.683790 CCCGATTCGCGACACAGTTC 61.684 60.000 9.15 0.00 44.57 3.01
1863 1937 1.736645 CCCGATTCGCGACACAGTT 60.737 57.895 9.15 0.00 44.57 3.16
1864 1938 2.126071 CCCGATTCGCGACACAGT 60.126 61.111 9.15 0.00 44.57 3.55
1865 1939 2.126071 ACCCGATTCGCGACACAG 60.126 61.111 9.15 0.00 44.57 3.66
1866 1940 2.431771 CACCCGATTCGCGACACA 60.432 61.111 9.15 0.00 44.57 3.72
1867 1941 2.431942 ACACCCGATTCGCGACAC 60.432 61.111 9.15 4.79 44.57 3.67
1868 1942 1.864725 TACACACCCGATTCGCGACA 61.865 55.000 9.15 0.00 44.57 4.35
1869 1943 1.153978 TACACACCCGATTCGCGAC 60.154 57.895 9.15 0.00 44.57 5.19
1870 1944 1.153978 GTACACACCCGATTCGCGA 60.154 57.895 3.71 3.71 44.57 5.87
1871 1945 0.734942 AAGTACACACCCGATTCGCG 60.735 55.000 0.00 0.00 40.47 5.87
1872 1946 1.127951 CAAAGTACACACCCGATTCGC 59.872 52.381 0.00 0.00 0.00 4.70
1873 1947 1.730064 CCAAAGTACACACCCGATTCG 59.270 52.381 0.00 0.00 0.00 3.34
1874 1948 3.048337 TCCAAAGTACACACCCGATTC 57.952 47.619 0.00 0.00 0.00 2.52
1875 1949 3.143728 GTTCCAAAGTACACACCCGATT 58.856 45.455 0.00 0.00 0.00 3.34
1876 1950 2.105134 TGTTCCAAAGTACACACCCGAT 59.895 45.455 0.00 0.00 0.00 4.18
1877 1951 1.485480 TGTTCCAAAGTACACACCCGA 59.515 47.619 0.00 0.00 0.00 5.14
1878 1952 1.956297 TGTTCCAAAGTACACACCCG 58.044 50.000 0.00 0.00 0.00 5.28
1879 1953 3.219281 ACATGTTCCAAAGTACACACCC 58.781 45.455 0.00 0.00 0.00 4.61
1880 1954 4.083484 GCTACATGTTCCAAAGTACACACC 60.083 45.833 2.30 0.00 0.00 4.16
1881 1955 4.513692 TGCTACATGTTCCAAAGTACACAC 59.486 41.667 2.30 0.00 0.00 3.82
1882 1956 4.513692 GTGCTACATGTTCCAAAGTACACA 59.486 41.667 2.30 0.00 0.00 3.72
1883 1957 4.755123 AGTGCTACATGTTCCAAAGTACAC 59.245 41.667 2.30 0.00 0.00 2.90
1884 1958 4.968259 AGTGCTACATGTTCCAAAGTACA 58.032 39.130 2.30 0.00 0.00 2.90
1885 1959 5.334879 CCAAGTGCTACATGTTCCAAAGTAC 60.335 44.000 2.30 4.59 0.00 2.73
1886 1960 4.759693 CCAAGTGCTACATGTTCCAAAGTA 59.240 41.667 2.30 0.00 0.00 2.24
1887 1961 3.569701 CCAAGTGCTACATGTTCCAAAGT 59.430 43.478 2.30 0.00 0.00 2.66
1888 1962 3.612479 GCCAAGTGCTACATGTTCCAAAG 60.612 47.826 2.30 0.00 36.87 2.77
1889 1963 2.295909 GCCAAGTGCTACATGTTCCAAA 59.704 45.455 2.30 0.00 36.87 3.28
1890 1964 1.885887 GCCAAGTGCTACATGTTCCAA 59.114 47.619 2.30 0.00 36.87 3.53
1891 1965 1.533625 GCCAAGTGCTACATGTTCCA 58.466 50.000 2.30 0.00 36.87 3.53
1902 1976 2.074547 TTACACGAGTAGCCAAGTGC 57.925 50.000 0.00 0.00 38.08 4.40
1903 1977 5.220416 GCTTTATTACACGAGTAGCCAAGTG 60.220 44.000 0.00 0.00 40.17 3.16
1904 1978 4.868734 GCTTTATTACACGAGTAGCCAAGT 59.131 41.667 0.00 0.00 0.00 3.16
1905 1979 4.270325 GGCTTTATTACACGAGTAGCCAAG 59.730 45.833 16.00 9.61 41.85 3.61
1906 1980 4.186159 GGCTTTATTACACGAGTAGCCAA 58.814 43.478 16.00 0.40 41.85 4.52
1907 1981 3.196039 TGGCTTTATTACACGAGTAGCCA 59.804 43.478 18.67 18.67 46.79 4.75
1908 1982 3.788937 TGGCTTTATTACACGAGTAGCC 58.211 45.455 14.55 14.55 42.34 3.93
1909 1983 4.211374 CCATGGCTTTATTACACGAGTAGC 59.789 45.833 0.00 0.00 0.00 3.58
1910 1984 5.597806 TCCATGGCTTTATTACACGAGTAG 58.402 41.667 6.96 0.00 0.00 2.57
1911 1985 5.361571 TCTCCATGGCTTTATTACACGAGTA 59.638 40.000 6.96 0.00 0.00 2.59
1912 1986 4.161565 TCTCCATGGCTTTATTACACGAGT 59.838 41.667 6.96 0.00 0.00 4.18
1913 1987 4.693283 TCTCCATGGCTTTATTACACGAG 58.307 43.478 6.96 0.00 0.00 4.18
1914 1988 4.404394 TCTCTCCATGGCTTTATTACACGA 59.596 41.667 6.96 0.00 0.00 4.35
1915 1989 4.693283 TCTCTCCATGGCTTTATTACACG 58.307 43.478 6.96 0.00 0.00 4.49
1916 1990 7.283127 TGATTTCTCTCCATGGCTTTATTACAC 59.717 37.037 6.96 0.00 0.00 2.90
1917 1991 7.345691 TGATTTCTCTCCATGGCTTTATTACA 58.654 34.615 6.96 0.00 0.00 2.41
1918 1992 7.807977 TGATTTCTCTCCATGGCTTTATTAC 57.192 36.000 6.96 0.00 0.00 1.89
1919 1993 8.400184 CATGATTTCTCTCCATGGCTTTATTA 57.600 34.615 6.96 0.00 35.34 0.98
1920 1994 7.286215 CATGATTTCTCTCCATGGCTTTATT 57.714 36.000 6.96 0.00 35.34 1.40
1921 1995 6.896021 CATGATTTCTCTCCATGGCTTTAT 57.104 37.500 6.96 0.00 35.34 1.40
1928 2002 8.865420 AAGATAATCCATGATTTCTCTCCATG 57.135 34.615 0.00 0.00 37.87 3.66
1929 2003 9.878737 AAAAGATAATCCATGATTTCTCTCCAT 57.121 29.630 0.00 0.00 33.95 3.41
1930 2004 9.705103 AAAAAGATAATCCATGATTTCTCTCCA 57.295 29.630 0.00 0.00 33.95 3.86
1953 2027 7.881232 AGATAATTCCACCTCTTCACGTAAAAA 59.119 33.333 0.00 0.00 0.00 1.94
1954 2028 7.391620 AGATAATTCCACCTCTTCACGTAAAA 58.608 34.615 0.00 0.00 0.00 1.52
1955 2029 6.942976 AGATAATTCCACCTCTTCACGTAAA 58.057 36.000 0.00 0.00 0.00 2.01
1956 2030 6.540438 AGATAATTCCACCTCTTCACGTAA 57.460 37.500 0.00 0.00 0.00 3.18
1957 2031 5.220989 CGAGATAATTCCACCTCTTCACGTA 60.221 44.000 0.00 0.00 0.00 3.57
1958 2032 4.440250 CGAGATAATTCCACCTCTTCACGT 60.440 45.833 0.00 0.00 0.00 4.49
1959 2033 4.045104 CGAGATAATTCCACCTCTTCACG 58.955 47.826 0.00 0.00 0.00 4.35
1960 2034 3.804873 GCGAGATAATTCCACCTCTTCAC 59.195 47.826 0.00 0.00 0.00 3.18
1961 2035 3.181465 GGCGAGATAATTCCACCTCTTCA 60.181 47.826 0.00 0.00 0.00 3.02
1962 2036 3.394719 GGCGAGATAATTCCACCTCTTC 58.605 50.000 0.00 0.00 0.00 2.87
1963 2037 2.104963 GGGCGAGATAATTCCACCTCTT 59.895 50.000 0.00 0.00 0.00 2.85
1964 2038 1.694696 GGGCGAGATAATTCCACCTCT 59.305 52.381 0.00 0.00 0.00 3.69
1965 2039 1.605712 CGGGCGAGATAATTCCACCTC 60.606 57.143 0.00 0.00 0.00 3.85
1966 2040 0.393077 CGGGCGAGATAATTCCACCT 59.607 55.000 0.00 0.00 0.00 4.00
1967 2041 0.602905 CCGGGCGAGATAATTCCACC 60.603 60.000 0.00 0.00 0.00 4.61
1968 2042 1.228657 GCCGGGCGAGATAATTCCAC 61.229 60.000 1.81 0.00 0.00 4.02
1969 2043 1.070786 GCCGGGCGAGATAATTCCA 59.929 57.895 1.81 0.00 0.00 3.53
1970 2044 0.670854 GAGCCGGGCGAGATAATTCC 60.671 60.000 14.39 0.00 0.00 3.01
1971 2045 0.670854 GGAGCCGGGCGAGATAATTC 60.671 60.000 14.39 2.54 0.00 2.17
1972 2046 1.371558 GGAGCCGGGCGAGATAATT 59.628 57.895 14.39 0.00 0.00 1.40
1973 2047 1.194781 ATGGAGCCGGGCGAGATAAT 61.195 55.000 14.39 0.21 0.00 1.28
1974 2048 1.407656 AATGGAGCCGGGCGAGATAA 61.408 55.000 14.39 0.00 0.00 1.75
1975 2049 1.837051 AATGGAGCCGGGCGAGATA 60.837 57.895 14.39 0.00 0.00 1.98
1976 2050 3.164269 AATGGAGCCGGGCGAGAT 61.164 61.111 14.39 3.57 0.00 2.75
1977 2051 4.161295 CAATGGAGCCGGGCGAGA 62.161 66.667 14.39 0.95 0.00 4.04
1978 2052 3.466791 ATCAATGGAGCCGGGCGAG 62.467 63.158 14.39 1.35 0.00 5.03
1979 2053 3.479203 ATCAATGGAGCCGGGCGA 61.479 61.111 14.39 3.74 0.00 5.54
1980 2054 3.282157 CATCAATGGAGCCGGGCG 61.282 66.667 14.39 0.00 0.00 6.13
1981 2055 3.599704 GCATCAATGGAGCCGGGC 61.600 66.667 12.11 12.11 0.00 6.13
1982 2056 2.908940 GGCATCAATGGAGCCGGG 60.909 66.667 2.18 0.00 38.86 5.73
1986 2060 0.971959 TGGGTTGGCATCAATGGAGC 60.972 55.000 0.00 0.00 35.10 4.70
1987 2061 1.684983 GATGGGTTGGCATCAATGGAG 59.315 52.381 0.00 0.00 35.10 3.86
1988 2062 1.288633 AGATGGGTTGGCATCAATGGA 59.711 47.619 0.00 0.00 35.10 3.41
1989 2063 1.684983 GAGATGGGTTGGCATCAATGG 59.315 52.381 0.00 0.00 35.10 3.16
1990 2064 1.684983 GGAGATGGGTTGGCATCAATG 59.315 52.381 0.00 0.00 35.10 2.82
1991 2065 1.412074 GGGAGATGGGTTGGCATCAAT 60.412 52.381 0.00 0.00 35.10 2.57
1992 2066 0.033208 GGGAGATGGGTTGGCATCAA 60.033 55.000 0.00 0.00 0.00 2.57
1993 2067 0.920763 AGGGAGATGGGTTGGCATCA 60.921 55.000 0.00 0.00 0.00 3.07
1994 2068 1.140312 TAGGGAGATGGGTTGGCATC 58.860 55.000 0.00 0.00 0.00 3.91
1995 2069 1.838611 ATAGGGAGATGGGTTGGCAT 58.161 50.000 0.00 0.00 0.00 4.40
1996 2070 2.090210 TCTATAGGGAGATGGGTTGGCA 60.090 50.000 0.00 0.00 0.00 4.92
1997 2071 2.303311 GTCTATAGGGAGATGGGTTGGC 59.697 54.545 0.00 0.00 0.00 4.52
1998 2072 3.580458 CTGTCTATAGGGAGATGGGTTGG 59.420 52.174 0.00 0.00 0.00 3.77
1999 2073 3.007398 GCTGTCTATAGGGAGATGGGTTG 59.993 52.174 0.00 0.00 0.00 3.77
2000 2074 3.243724 GCTGTCTATAGGGAGATGGGTT 58.756 50.000 0.00 0.00 0.00 4.11
2001 2075 2.819726 CGCTGTCTATAGGGAGATGGGT 60.820 54.545 0.00 0.00 32.84 4.51
2002 2076 1.821753 CGCTGTCTATAGGGAGATGGG 59.178 57.143 0.00 0.00 32.84 4.00
2003 2077 2.796557 TCGCTGTCTATAGGGAGATGG 58.203 52.381 0.00 0.00 35.08 3.51
2004 2078 4.742417 CAATCGCTGTCTATAGGGAGATG 58.258 47.826 0.00 0.00 41.99 2.90
2005 2079 3.194542 GCAATCGCTGTCTATAGGGAGAT 59.805 47.826 0.00 1.59 41.99 2.75
2006 2080 2.558795 GCAATCGCTGTCTATAGGGAGA 59.441 50.000 0.00 0.00 41.99 3.71
2007 2081 2.297315 TGCAATCGCTGTCTATAGGGAG 59.703 50.000 0.00 0.00 41.99 4.30
2008 2082 2.035961 GTGCAATCGCTGTCTATAGGGA 59.964 50.000 0.00 0.00 42.73 4.20
2009 2083 2.224042 TGTGCAATCGCTGTCTATAGGG 60.224 50.000 0.00 0.00 39.64 3.53
2010 2084 3.097877 TGTGCAATCGCTGTCTATAGG 57.902 47.619 0.00 0.00 39.64 2.57
2011 2085 4.363138 TCTTGTGCAATCGCTGTCTATAG 58.637 43.478 0.00 0.00 39.64 1.31
2012 2086 4.363138 CTCTTGTGCAATCGCTGTCTATA 58.637 43.478 0.00 0.00 39.64 1.31
2013 2087 3.193263 CTCTTGTGCAATCGCTGTCTAT 58.807 45.455 0.00 0.00 39.64 1.98
2014 2088 2.610433 CTCTTGTGCAATCGCTGTCTA 58.390 47.619 0.00 0.00 39.64 2.59
2015 2089 1.436600 CTCTTGTGCAATCGCTGTCT 58.563 50.000 0.00 0.00 39.64 3.41
2016 2090 0.179205 GCTCTTGTGCAATCGCTGTC 60.179 55.000 0.00 0.00 39.64 3.51
2017 2091 1.580845 GGCTCTTGTGCAATCGCTGT 61.581 55.000 0.00 0.00 39.64 4.40
2018 2092 1.136147 GGCTCTTGTGCAATCGCTG 59.864 57.895 0.00 0.00 39.64 5.18
2019 2093 2.393768 CGGCTCTTGTGCAATCGCT 61.394 57.895 0.00 0.00 39.64 4.93
2020 2094 2.099062 CGGCTCTTGTGCAATCGC 59.901 61.111 0.00 0.00 39.24 4.58
2021 2095 2.034879 ACCGGCTCTTGTGCAATCG 61.035 57.895 0.00 0.00 34.04 3.34
2022 2096 1.503542 CACCGGCTCTTGTGCAATC 59.496 57.895 0.00 0.00 34.04 2.67
2023 2097 3.672293 CACCGGCTCTTGTGCAAT 58.328 55.556 0.00 0.00 34.04 3.56
2038 2112 4.679373 TCTCTTATCTCTTGATGGGCAC 57.321 45.455 0.00 0.00 34.32 5.01
2039 2113 4.102210 CCTTCTCTTATCTCTTGATGGGCA 59.898 45.833 0.00 0.00 34.32 5.36
2040 2114 4.346418 TCCTTCTCTTATCTCTTGATGGGC 59.654 45.833 0.00 0.00 34.32 5.36
2041 2115 6.043012 ACATCCTTCTCTTATCTCTTGATGGG 59.957 42.308 0.00 0.00 33.23 4.00
2042 2116 7.065120 ACATCCTTCTCTTATCTCTTGATGG 57.935 40.000 0.00 0.00 33.23 3.51
2642 2762 0.107361 GCCACCGGCTATGTTACCTT 60.107 55.000 0.00 0.00 46.69 3.50
2669 2789 1.496429 GTTCAGGATCCCCACATCCAT 59.504 52.381 8.55 0.00 44.57 3.41
2684 2804 3.194542 CCTCTCTACAGGGTGAAGTTCAG 59.805 52.174 5.62 0.00 0.00 3.02
2690 2810 2.241430 TCGATCCTCTCTACAGGGTGAA 59.759 50.000 0.00 0.00 33.81 3.18
2732 2852 0.461135 AAGCAACAACAACAGCTGGG 59.539 50.000 19.93 12.40 37.41 4.45
2786 2906 1.741770 GCCCGGTTCTGCACTAGTG 60.742 63.158 18.93 18.93 0.00 2.74
2787 2907 2.663196 GCCCGGTTCTGCACTAGT 59.337 61.111 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.