Multiple sequence alignment - TraesCS7A01G477500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G477500 chr7A 100.000 5930 0 0 1 5930 671126770 671120841 0.000000e+00 10951.0
1 TraesCS7A01G477500 chr7A 86.906 1451 125 34 3460 4895 671074860 671073460 0.000000e+00 1567.0
2 TraesCS7A01G477500 chr7A 92.561 820 60 1 5111 5930 92364754 92365572 0.000000e+00 1175.0
3 TraesCS7A01G477500 chr7A 91.707 820 68 0 5111 5930 85952862 85953681 0.000000e+00 1138.0
4 TraesCS7A01G477500 chr7A 91.707 820 68 0 5111 5930 556382849 556382030 0.000000e+00 1138.0
5 TraesCS7A01G477500 chr7A 93.490 768 17 12 493 1240 671076664 671075910 0.000000e+00 1110.0
6 TraesCS7A01G477500 chr7A 85.477 964 92 31 2351 3300 671075922 671074993 0.000000e+00 961.0
7 TraesCS7A01G477500 chr7A 86.598 97 12 1 388 483 241728363 241728459 8.130000e-19 106.0
8 TraesCS7A01G477500 chr7D 93.863 2721 141 13 1940 4646 579252648 579249940 0.000000e+00 4076.0
9 TraesCS7A01G477500 chr7D 92.142 1209 68 14 747 1944 579253875 579252683 0.000000e+00 1681.0
10 TraesCS7A01G477500 chr7D 86.204 1341 121 32 3568 4895 579197780 579196491 0.000000e+00 1393.0
11 TraesCS7A01G477500 chr7D 91.474 821 69 1 5111 5930 583073493 583072673 0.000000e+00 1127.0
12 TraesCS7A01G477500 chr7D 87.927 936 82 18 2351 3267 579198861 579197938 0.000000e+00 1074.0
13 TraesCS7A01G477500 chr7D 88.457 771 39 20 493 1240 579199592 579198849 0.000000e+00 885.0
14 TraesCS7A01G477500 chr7D 90.799 413 24 2 4671 5070 579247858 579247447 1.880000e-149 540.0
15 TraesCS7A01G477500 chr7D 89.375 320 12 9 439 748 579254231 579253924 3.350000e-102 383.0
16 TraesCS7A01G477500 chr7D 86.957 161 9 2 6 156 543095622 543095464 2.840000e-38 171.0
17 TraesCS7A01G477500 chr7B 91.265 1225 73 13 3868 5070 643659672 643658460 0.000000e+00 1639.0
18 TraesCS7A01G477500 chr7B 85.274 1460 140 42 3456 4895 643568336 643566932 0.000000e+00 1435.0
19 TraesCS7A01G477500 chr7B 85.244 1457 140 44 3456 4895 643626164 643624766 0.000000e+00 1430.0
20 TraesCS7A01G477500 chr7B 88.048 1004 81 25 2351 3331 643627258 643626271 0.000000e+00 1153.0
21 TraesCS7A01G477500 chr7B 92.269 789 40 11 2351 3122 643698010 643697226 0.000000e+00 1099.0
22 TraesCS7A01G477500 chr7B 88.144 970 49 30 312 1240 643698942 643697998 0.000000e+00 1094.0
23 TraesCS7A01G477500 chr7B 92.481 665 23 16 585 1240 643570023 643569377 0.000000e+00 926.0
24 TraesCS7A01G477500 chr7B 89.161 775 30 26 493 1240 643627993 643627246 0.000000e+00 917.0
25 TraesCS7A01G477500 chr7B 92.936 637 20 15 585 1214 643610556 643609938 0.000000e+00 904.0
26 TraesCS7A01G477500 chr7B 87.124 699 54 8 2353 3021 643569387 643568695 0.000000e+00 760.0
27 TraesCS7A01G477500 chr7B 90.754 411 35 3 3114 3523 643672808 643672400 4.040000e-151 545.0
28 TraesCS7A01G477500 chr7B 92.131 305 23 1 3566 3870 643672395 643672092 4.250000e-116 429.0
29 TraesCS7A01G477500 chr7B 85.606 396 56 1 3660 4054 643378122 643377727 1.190000e-111 414.0
30 TraesCS7A01G477500 chr7B 75.581 688 155 12 1239 1921 63947836 63948515 1.590000e-85 327.0
31 TraesCS7A01G477500 chr7B 85.149 303 31 8 892 1192 643382171 643381881 1.250000e-76 298.0
32 TraesCS7A01G477500 chr7B 91.398 186 16 0 4429 4614 643376749 643376564 7.630000e-64 255.0
33 TraesCS7A01G477500 chr7B 92.683 123 9 0 4773 4895 643586825 643586703 1.700000e-40 178.0
34 TraesCS7A01G477500 chr7B 91.954 87 6 1 70 156 586306580 586306495 2.900000e-23 121.0
35 TraesCS7A01G477500 chr7B 94.667 75 4 0 208 282 586306364 586306290 3.750000e-22 117.0
36 TraesCS7A01G477500 chr7B 85.577 104 14 1 381 483 631427094 631427197 2.260000e-19 108.0
37 TraesCS7A01G477500 chr7B 83.810 105 16 1 381 484 52661540 52661436 1.360000e-16 99.0
38 TraesCS7A01G477500 chr7B 83.810 105 16 1 381 484 52682895 52682791 1.360000e-16 99.0
39 TraesCS7A01G477500 chr7B 77.564 156 26 7 3820 3970 654861481 654861330 1.060000e-12 86.1
40 TraesCS7A01G477500 chr7B 97.561 41 1 0 115 155 643699150 643699110 2.960000e-08 71.3
41 TraesCS7A01G477500 chr1A 92.805 820 56 2 5111 5930 551301416 551302232 0.000000e+00 1184.0
42 TraesCS7A01G477500 chr1A 94.118 34 2 0 5066 5099 566216447 566216414 1.100000e-02 52.8
43 TraesCS7A01G477500 chr6D 92.439 820 62 0 5111 5930 7446954 7447773 0.000000e+00 1171.0
44 TraesCS7A01G477500 chr6D 83.654 104 16 1 381 483 428601756 428601859 4.890000e-16 97.1
45 TraesCS7A01G477500 chr6D 91.111 45 3 1 5074 5118 337843271 337843314 6.420000e-05 60.2
46 TraesCS7A01G477500 chrUn 84.609 1215 123 40 3456 4651 316974332 316975501 0.000000e+00 1149.0
47 TraesCS7A01G477500 chrUn 92.342 666 23 16 585 1240 316972644 316973291 0.000000e+00 922.0
48 TraesCS7A01G477500 chrUn 87.554 699 51 8 2353 3021 316973281 316973973 0.000000e+00 776.0
49 TraesCS7A01G477500 chrUn 92.683 123 9 0 4773 4895 369638983 369639105 1.700000e-40 178.0
50 TraesCS7A01G477500 chr4A 91.951 820 66 0 5111 5930 71082649 71081830 0.000000e+00 1149.0
51 TraesCS7A01G477500 chr4A 83.019 106 18 0 381 486 716944082 716944187 4.890000e-16 97.1
52 TraesCS7A01G477500 chr4D 91.717 821 64 3 5112 5930 19346480 19347298 0.000000e+00 1136.0
53 TraesCS7A01G477500 chr4D 77.839 361 74 6 1988 2345 329001629 329001272 1.000000e-52 219.0
54 TraesCS7A01G477500 chr1D 91.606 822 66 3 5111 5930 365752068 365751248 0.000000e+00 1133.0
55 TraesCS7A01G477500 chr1D 88.068 704 75 4 1240 1939 326905253 326905951 0.000000e+00 826.0
56 TraesCS7A01G477500 chr3A 88.620 703 74 5 1239 1939 543741400 543742098 0.000000e+00 850.0
57 TraesCS7A01G477500 chr3A 87.874 701 78 4 1239 1939 502911975 502912668 0.000000e+00 817.0
58 TraesCS7A01G477500 chr3A 89.286 280 25 2 1940 2218 543742134 543742409 4.400000e-91 346.0
59 TraesCS7A01G477500 chr3B 87.694 707 77 6 1239 1939 597786193 597786895 0.000000e+00 815.0
60 TraesCS7A01G477500 chr3B 89.435 407 38 2 1940 2345 597786931 597787333 5.300000e-140 508.0
61 TraesCS7A01G477500 chr2D 86.648 704 87 6 1239 1941 427339033 427339730 0.000000e+00 773.0
62 TraesCS7A01G477500 chr2D 85.440 364 52 1 1983 2345 101978488 101978851 1.560000e-100 377.0
63 TraesCS7A01G477500 chr4B 84.529 711 81 12 1239 1944 587750558 587749872 0.000000e+00 676.0
64 TraesCS7A01G477500 chr4B 88.308 402 41 3 1940 2340 587749839 587749443 1.500000e-130 477.0
65 TraesCS7A01G477500 chr4B 86.946 406 46 3 1942 2345 72671910 72672310 3.260000e-122 449.0
66 TraesCS7A01G477500 chr5B 88.557 402 39 4 1942 2341 403699741 403699345 1.160000e-131 481.0
67 TraesCS7A01G477500 chr5B 86.538 104 14 0 381 484 34915437 34915540 1.350000e-21 115.0
68 TraesCS7A01G477500 chr5B 93.056 72 2 2 1313 1384 684191417 684191485 1.050000e-17 102.0
69 TraesCS7A01G477500 chr2B 82.133 347 54 4 1940 2285 400367748 400367409 2.090000e-74 291.0
70 TraesCS7A01G477500 chr2B 74.239 493 115 11 1455 1941 704427534 704427048 4.690000e-46 196.0
71 TraesCS7A01G477500 chr5A 86.667 105 13 1 381 484 480119434 480119538 1.350000e-21 115.0
72 TraesCS7A01G477500 chr5A 88.136 59 7 0 98 156 71241212 71241154 2.960000e-08 71.3
73 TraesCS7A01G477500 chr5D 86.869 99 8 5 283 377 557349427 557349524 8.130000e-19 106.0
74 TraesCS7A01G477500 chr5D 86.139 101 8 6 283 378 557340704 557340803 2.920000e-18 104.0
75 TraesCS7A01G477500 chr5D 86.000 100 9 5 283 378 557370795 557370893 1.050000e-17 102.0
76 TraesCS7A01G477500 chr5D 86.000 100 9 5 283 378 564743251 564743349 1.050000e-17 102.0
77 TraesCS7A01G477500 chr3D 84.112 107 16 1 381 486 66312275 66312169 1.050000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G477500 chr7A 671120841 671126770 5929 True 10951.000000 10951 100.000000 1 5930 1 chr7A.!!$R2 5929
1 TraesCS7A01G477500 chr7A 671073460 671076664 3204 True 1212.666667 1567 88.624333 493 4895 3 chr7A.!!$R3 4402
2 TraesCS7A01G477500 chr7A 92364754 92365572 818 False 1175.000000 1175 92.561000 5111 5930 1 chr7A.!!$F2 819
3 TraesCS7A01G477500 chr7A 85952862 85953681 819 False 1138.000000 1138 91.707000 5111 5930 1 chr7A.!!$F1 819
4 TraesCS7A01G477500 chr7A 556382030 556382849 819 True 1138.000000 1138 91.707000 5111 5930 1 chr7A.!!$R1 819
5 TraesCS7A01G477500 chr7D 579247447 579254231 6784 True 1670.000000 4076 91.544750 439 5070 4 chr7D.!!$R4 4631
6 TraesCS7A01G477500 chr7D 583072673 583073493 820 True 1127.000000 1127 91.474000 5111 5930 1 chr7D.!!$R2 819
7 TraesCS7A01G477500 chr7D 579196491 579199592 3101 True 1117.333333 1393 87.529333 493 4895 3 chr7D.!!$R3 4402
8 TraesCS7A01G477500 chr7B 643658460 643659672 1212 True 1639.000000 1639 91.265000 3868 5070 1 chr7B.!!$R5 1202
9 TraesCS7A01G477500 chr7B 643624766 643627993 3227 True 1166.666667 1430 87.484333 493 4895 3 chr7B.!!$R10 4402
10 TraesCS7A01G477500 chr7B 643566932 643570023 3091 True 1040.333333 1435 88.293000 585 4895 3 chr7B.!!$R9 4310
11 TraesCS7A01G477500 chr7B 643609938 643610556 618 True 904.000000 904 92.936000 585 1214 1 chr7B.!!$R4 629
12 TraesCS7A01G477500 chr7B 643697226 643699150 1924 True 754.766667 1099 92.658000 115 3122 3 chr7B.!!$R12 3007
13 TraesCS7A01G477500 chr7B 643672092 643672808 716 True 487.000000 545 91.442500 3114 3870 2 chr7B.!!$R11 756
14 TraesCS7A01G477500 chr7B 63947836 63948515 679 False 327.000000 327 75.581000 1239 1921 1 chr7B.!!$F1 682
15 TraesCS7A01G477500 chr7B 643376564 643382171 5607 True 322.333333 414 87.384333 892 4614 3 chr7B.!!$R8 3722
16 TraesCS7A01G477500 chr1A 551301416 551302232 816 False 1184.000000 1184 92.805000 5111 5930 1 chr1A.!!$F1 819
17 TraesCS7A01G477500 chr6D 7446954 7447773 819 False 1171.000000 1171 92.439000 5111 5930 1 chr6D.!!$F1 819
18 TraesCS7A01G477500 chrUn 316972644 316975501 2857 False 949.000000 1149 88.168333 585 4651 3 chrUn.!!$F2 4066
19 TraesCS7A01G477500 chr4A 71081830 71082649 819 True 1149.000000 1149 91.951000 5111 5930 1 chr4A.!!$R1 819
20 TraesCS7A01G477500 chr4D 19346480 19347298 818 False 1136.000000 1136 91.717000 5112 5930 1 chr4D.!!$F1 818
21 TraesCS7A01G477500 chr1D 365751248 365752068 820 True 1133.000000 1133 91.606000 5111 5930 1 chr1D.!!$R1 819
22 TraesCS7A01G477500 chr1D 326905253 326905951 698 False 826.000000 826 88.068000 1240 1939 1 chr1D.!!$F1 699
23 TraesCS7A01G477500 chr3A 502911975 502912668 693 False 817.000000 817 87.874000 1239 1939 1 chr3A.!!$F1 700
24 TraesCS7A01G477500 chr3A 543741400 543742409 1009 False 598.000000 850 88.953000 1239 2218 2 chr3A.!!$F2 979
25 TraesCS7A01G477500 chr3B 597786193 597787333 1140 False 661.500000 815 88.564500 1239 2345 2 chr3B.!!$F1 1106
26 TraesCS7A01G477500 chr2D 427339033 427339730 697 False 773.000000 773 86.648000 1239 1941 1 chr2D.!!$F2 702
27 TraesCS7A01G477500 chr4B 587749443 587750558 1115 True 576.500000 676 86.418500 1239 2340 2 chr4B.!!$R1 1101

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.392336 TGGCAAAACAATCCTGCACC 59.608 50.000 0.00 0.0 37.83 5.01 F
167 249 0.456824 CAGCTAGCGCTCGAAGTTCA 60.457 55.000 16.34 0.0 45.15 3.18 F
168 250 0.457851 AGCTAGCGCTCGAAGTTCAT 59.542 50.000 16.34 0.0 45.15 2.57 F
183 265 0.457853 TTCATCTCTTCGGCGGTTCG 60.458 55.000 7.21 0.0 0.00 3.95 F
2093 2389 0.680618 TCTTTGGGCTTACGTCCGAA 59.319 50.000 0.00 0.0 37.90 4.30 F
2303 2600 1.285280 CCCCAAGACCACCATACTCA 58.715 55.000 0.00 0.0 0.00 3.41 F
3912 7121 1.381872 CCTCGTCAGGACCCTGGAT 60.382 63.158 15.43 0.0 43.65 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2000 2296 0.170561 GGCTCTCAAGTGCAATGCTG 59.829 55.000 6.82 0.00 36.36 4.41 R
2093 2389 0.560688 TTTGGACTCCCCTTGGCTTT 59.439 50.000 0.00 0.00 35.38 3.51 R
2129 2426 0.616371 CTACCATCACCGTGGGGAAA 59.384 55.000 14.69 4.39 43.77 3.13 R
2213 2510 3.456277 GGTATGAGTGGAAGGAACCTCAT 59.544 47.826 6.29 6.29 44.52 2.90 R
4005 7214 0.670546 CAACGTTGGAGGCGATGACT 60.671 55.000 20.71 0.00 34.75 3.41 R
4669 8555 9.757227 TGAAGGAAAACAAACCAAAACATATAG 57.243 29.630 0.00 0.00 0.00 1.31 R
5077 11039 0.108520 CCATACGTGTGGGCGTTAGT 60.109 55.000 22.66 0.00 43.04 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.450160 GCACTTGCACGTATAATTGGC 58.550 47.619 0.00 0.00 41.59 4.52
25 26 2.159448 GCACTTGCACGTATAATTGGCA 60.159 45.455 0.00 0.00 41.59 4.92
26 27 3.671971 GCACTTGCACGTATAATTGGCAA 60.672 43.478 0.68 0.68 41.67 4.52
27 28 4.480541 CACTTGCACGTATAATTGGCAAA 58.519 39.130 3.01 0.00 43.08 3.68
28 29 4.920340 CACTTGCACGTATAATTGGCAAAA 59.080 37.500 3.01 0.00 43.08 2.44
29 30 4.920927 ACTTGCACGTATAATTGGCAAAAC 59.079 37.500 3.01 0.00 43.08 2.43
30 31 4.505313 TGCACGTATAATTGGCAAAACA 57.495 36.364 3.01 0.00 0.00 2.83
31 32 4.871513 TGCACGTATAATTGGCAAAACAA 58.128 34.783 3.01 0.00 34.41 2.83
32 33 5.473931 TGCACGTATAATTGGCAAAACAAT 58.526 33.333 3.01 0.00 42.56 2.71
33 34 5.574830 TGCACGTATAATTGGCAAAACAATC 59.425 36.000 3.01 0.00 40.01 2.67
34 35 5.005299 GCACGTATAATTGGCAAAACAATCC 59.995 40.000 3.01 0.00 40.01 3.01
35 36 6.329496 CACGTATAATTGGCAAAACAATCCT 58.671 36.000 3.01 0.00 40.01 3.24
36 37 6.253298 CACGTATAATTGGCAAAACAATCCTG 59.747 38.462 3.01 0.00 40.01 3.86
37 38 5.231991 CGTATAATTGGCAAAACAATCCTGC 59.768 40.000 3.01 0.00 40.01 4.85
38 39 3.488778 AATTGGCAAAACAATCCTGCA 57.511 38.095 3.01 0.00 40.01 4.41
39 40 2.237393 TTGGCAAAACAATCCTGCAC 57.763 45.000 0.00 0.00 37.83 4.57
40 41 0.392336 TGGCAAAACAATCCTGCACC 59.608 50.000 0.00 0.00 37.83 5.01
41 42 0.392336 GGCAAAACAATCCTGCACCA 59.608 50.000 0.00 0.00 37.83 4.17
42 43 1.606224 GGCAAAACAATCCTGCACCAG 60.606 52.381 0.00 0.00 37.83 4.00
43 44 1.069049 GCAAAACAATCCTGCACCAGT 59.931 47.619 0.00 0.00 36.09 4.00
44 45 2.483538 GCAAAACAATCCTGCACCAGTT 60.484 45.455 0.00 0.00 36.09 3.16
45 46 3.383761 CAAAACAATCCTGCACCAGTTC 58.616 45.455 0.00 0.00 0.00 3.01
46 47 2.664402 AACAATCCTGCACCAGTTCT 57.336 45.000 0.00 0.00 0.00 3.01
47 48 3.788227 AACAATCCTGCACCAGTTCTA 57.212 42.857 0.00 0.00 0.00 2.10
48 49 3.340814 ACAATCCTGCACCAGTTCTAG 57.659 47.619 0.00 0.00 0.00 2.43
49 50 2.639839 ACAATCCTGCACCAGTTCTAGT 59.360 45.455 0.00 0.00 0.00 2.57
50 51 3.838317 ACAATCCTGCACCAGTTCTAGTA 59.162 43.478 0.00 0.00 0.00 1.82
51 52 4.471386 ACAATCCTGCACCAGTTCTAGTAT 59.529 41.667 0.00 0.00 0.00 2.12
52 53 5.661312 ACAATCCTGCACCAGTTCTAGTATA 59.339 40.000 0.00 0.00 0.00 1.47
53 54 6.327626 ACAATCCTGCACCAGTTCTAGTATAT 59.672 38.462 0.00 0.00 0.00 0.86
54 55 5.791336 TCCTGCACCAGTTCTAGTATATG 57.209 43.478 0.00 0.00 0.00 1.78
55 56 4.039245 TCCTGCACCAGTTCTAGTATATGC 59.961 45.833 0.00 0.00 0.00 3.14
56 57 3.977427 TGCACCAGTTCTAGTATATGCG 58.023 45.455 0.00 0.00 34.56 4.73
57 58 3.383505 TGCACCAGTTCTAGTATATGCGT 59.616 43.478 0.00 0.00 34.56 5.24
58 59 4.581409 TGCACCAGTTCTAGTATATGCGTA 59.419 41.667 0.00 0.00 34.56 4.42
59 60 5.154932 GCACCAGTTCTAGTATATGCGTAG 58.845 45.833 0.00 0.00 0.00 3.51
60 61 5.048921 GCACCAGTTCTAGTATATGCGTAGA 60.049 44.000 0.00 0.00 0.00 2.59
61 62 6.349445 GCACCAGTTCTAGTATATGCGTAGAT 60.349 42.308 0.00 0.00 0.00 1.98
62 63 7.148289 GCACCAGTTCTAGTATATGCGTAGATA 60.148 40.741 0.00 0.00 0.00 1.98
63 64 8.391859 CACCAGTTCTAGTATATGCGTAGATAG 58.608 40.741 0.00 0.00 0.00 2.08
64 65 8.102047 ACCAGTTCTAGTATATGCGTAGATAGT 58.898 37.037 1.16 1.16 0.00 2.12
65 66 9.597170 CCAGTTCTAGTATATGCGTAGATAGTA 57.403 37.037 3.23 3.23 0.00 1.82
70 71 9.043079 TCTAGTATATGCGTAGATAGTACATGC 57.957 37.037 0.00 0.00 0.00 4.06
71 72 7.625828 AGTATATGCGTAGATAGTACATGCA 57.374 36.000 0.00 0.00 35.10 3.96
72 73 7.473366 AGTATATGCGTAGATAGTACATGCAC 58.527 38.462 0.00 0.00 33.21 4.57
73 74 4.584327 ATGCGTAGATAGTACATGCACA 57.416 40.909 0.00 0.00 33.21 4.57
74 75 4.584327 TGCGTAGATAGTACATGCACAT 57.416 40.909 0.00 0.00 0.00 3.21
75 76 4.298332 TGCGTAGATAGTACATGCACATG 58.702 43.478 9.06 9.06 44.15 3.21
76 77 3.121944 GCGTAGATAGTACATGCACATGC 59.878 47.826 10.50 0.00 42.39 4.06
90 91 4.120646 GCACATGCATACGTAGATTGTC 57.879 45.455 0.00 0.00 41.59 3.18
91 92 3.555547 GCACATGCATACGTAGATTGTCA 59.444 43.478 0.00 0.00 41.59 3.58
92 93 4.033932 GCACATGCATACGTAGATTGTCAA 59.966 41.667 0.00 0.00 41.59 3.18
93 94 5.277490 GCACATGCATACGTAGATTGTCAAT 60.277 40.000 0.00 0.00 41.59 2.57
94 95 6.718388 CACATGCATACGTAGATTGTCAATT 58.282 36.000 0.00 0.00 0.00 2.32
95 96 6.847792 CACATGCATACGTAGATTGTCAATTC 59.152 38.462 0.00 0.00 0.00 2.17
96 97 5.984233 TGCATACGTAGATTGTCAATTCC 57.016 39.130 0.08 0.00 0.00 3.01
97 98 5.423886 TGCATACGTAGATTGTCAATTCCA 58.576 37.500 0.08 0.00 0.00 3.53
98 99 6.054941 TGCATACGTAGATTGTCAATTCCAT 58.945 36.000 0.08 0.00 0.00 3.41
99 100 6.202762 TGCATACGTAGATTGTCAATTCCATC 59.797 38.462 0.08 0.00 0.00 3.51
100 101 6.616471 GCATACGTAGATTGTCAATTCCATCG 60.616 42.308 0.08 4.31 0.00 3.84
101 102 5.006153 ACGTAGATTGTCAATTCCATCGA 57.994 39.130 0.00 0.00 0.00 3.59
102 103 5.043903 ACGTAGATTGTCAATTCCATCGAG 58.956 41.667 0.00 0.00 0.00 4.04
103 104 5.043903 CGTAGATTGTCAATTCCATCGAGT 58.956 41.667 0.00 0.00 0.00 4.18
104 105 5.174035 CGTAGATTGTCAATTCCATCGAGTC 59.826 44.000 0.00 0.00 0.00 3.36
105 106 5.089970 AGATTGTCAATTCCATCGAGTCA 57.910 39.130 0.00 0.00 0.00 3.41
106 107 5.678583 AGATTGTCAATTCCATCGAGTCAT 58.321 37.500 0.00 0.00 0.00 3.06
107 108 6.118170 AGATTGTCAATTCCATCGAGTCATT 58.882 36.000 0.00 0.00 0.00 2.57
108 109 5.550232 TTGTCAATTCCATCGAGTCATTG 57.450 39.130 0.00 0.00 0.00 2.82
109 110 4.578871 TGTCAATTCCATCGAGTCATTGT 58.421 39.130 0.00 0.00 0.00 2.71
110 111 4.631377 TGTCAATTCCATCGAGTCATTGTC 59.369 41.667 0.00 0.00 0.00 3.18
111 112 4.034510 GTCAATTCCATCGAGTCATTGTCC 59.965 45.833 0.00 0.00 0.00 4.02
112 113 3.912496 ATTCCATCGAGTCATTGTCCA 57.088 42.857 0.00 0.00 0.00 4.02
113 114 2.967599 TCCATCGAGTCATTGTCCAG 57.032 50.000 0.00 0.00 0.00 3.86
146 147 3.113322 GTTGCATGCATATGACAGCAAG 58.887 45.455 23.37 6.52 44.88 4.01
164 246 2.492090 CCAGCTAGCGCTCGAAGT 59.508 61.111 16.34 0.00 45.15 3.01
165 247 1.153745 CCAGCTAGCGCTCGAAGTT 60.154 57.895 16.34 0.00 45.15 2.66
166 248 1.142778 CCAGCTAGCGCTCGAAGTTC 61.143 60.000 16.34 0.00 45.15 3.01
167 249 0.456824 CAGCTAGCGCTCGAAGTTCA 60.457 55.000 16.34 0.00 45.15 3.18
168 250 0.457851 AGCTAGCGCTCGAAGTTCAT 59.542 50.000 16.34 0.00 45.15 2.57
169 251 0.849579 GCTAGCGCTCGAAGTTCATC 59.150 55.000 16.34 0.00 0.00 2.92
170 252 1.535015 GCTAGCGCTCGAAGTTCATCT 60.535 52.381 16.34 0.00 0.00 2.90
171 253 2.380660 CTAGCGCTCGAAGTTCATCTC 58.619 52.381 16.34 0.00 0.00 2.75
172 254 0.814457 AGCGCTCGAAGTTCATCTCT 59.186 50.000 2.64 0.00 0.00 3.10
173 255 1.203523 AGCGCTCGAAGTTCATCTCTT 59.796 47.619 2.64 0.00 0.00 2.85
174 256 1.586123 GCGCTCGAAGTTCATCTCTTC 59.414 52.381 0.00 0.00 38.22 2.87
179 261 1.281899 GAAGTTCATCTCTTCGGCGG 58.718 55.000 7.21 0.00 33.30 6.13
180 262 0.608640 AAGTTCATCTCTTCGGCGGT 59.391 50.000 7.21 0.00 0.00 5.68
181 263 0.608640 AGTTCATCTCTTCGGCGGTT 59.391 50.000 7.21 0.00 0.00 4.44
182 264 1.000145 GTTCATCTCTTCGGCGGTTC 59.000 55.000 7.21 0.00 0.00 3.62
183 265 0.457853 TTCATCTCTTCGGCGGTTCG 60.458 55.000 7.21 0.00 0.00 3.95
184 266 1.878522 CATCTCTTCGGCGGTTCGG 60.879 63.158 7.21 0.00 0.00 4.30
202 284 4.717629 CCGACTGCGCACCGAAGA 62.718 66.667 23.79 0.00 35.81 2.87
203 285 3.470567 CGACTGCGCACCGAAGAC 61.471 66.667 19.13 4.06 35.81 3.01
204 286 2.355837 GACTGCGCACCGAAGACA 60.356 61.111 5.66 0.00 35.81 3.41
205 287 2.356313 ACTGCGCACCGAAGACAG 60.356 61.111 5.66 0.00 35.81 3.51
206 288 2.049156 CTGCGCACCGAAGACAGA 60.049 61.111 5.66 0.00 33.75 3.41
207 289 1.446792 CTGCGCACCGAAGACAGAT 60.447 57.895 5.66 0.00 33.75 2.90
208 290 1.416813 CTGCGCACCGAAGACAGATC 61.417 60.000 5.66 0.00 33.75 2.75
232 314 2.908073 GCCAGGCCGTGTGTTCTTG 61.908 63.158 0.00 0.00 0.00 3.02
233 315 1.227823 CCAGGCCGTGTGTTCTTGA 60.228 57.895 0.00 0.00 0.00 3.02
234 316 1.230635 CCAGGCCGTGTGTTCTTGAG 61.231 60.000 0.00 0.00 0.00 3.02
235 317 1.598130 AGGCCGTGTGTTCTTGAGC 60.598 57.895 0.00 0.00 0.00 4.26
236 318 2.617274 GGCCGTGTGTTCTTGAGCC 61.617 63.158 0.00 0.00 0.00 4.70
237 319 2.617274 GCCGTGTGTTCTTGAGCCC 61.617 63.158 0.00 0.00 0.00 5.19
238 320 1.227823 CCGTGTGTTCTTGAGCCCA 60.228 57.895 0.00 0.00 0.00 5.36
239 321 0.817634 CCGTGTGTTCTTGAGCCCAA 60.818 55.000 0.00 0.00 0.00 4.12
240 322 1.021202 CGTGTGTTCTTGAGCCCAAA 58.979 50.000 0.00 0.00 0.00 3.28
241 323 1.002468 CGTGTGTTCTTGAGCCCAAAG 60.002 52.381 0.00 0.00 0.00 2.77
242 324 2.024414 GTGTGTTCTTGAGCCCAAAGT 58.976 47.619 0.00 0.00 0.00 2.66
243 325 3.211045 GTGTGTTCTTGAGCCCAAAGTA 58.789 45.455 0.00 0.00 0.00 2.24
244 326 3.003378 GTGTGTTCTTGAGCCCAAAGTAC 59.997 47.826 0.00 0.00 0.00 2.73
245 327 3.211045 GTGTTCTTGAGCCCAAAGTACA 58.789 45.455 0.00 0.79 0.00 2.90
246 328 3.821033 GTGTTCTTGAGCCCAAAGTACAT 59.179 43.478 0.00 0.00 0.00 2.29
247 329 4.072131 TGTTCTTGAGCCCAAAGTACATC 58.928 43.478 0.00 0.00 0.00 3.06
248 330 2.972625 TCTTGAGCCCAAAGTACATCG 58.027 47.619 0.00 0.00 0.00 3.84
249 331 2.565391 TCTTGAGCCCAAAGTACATCGA 59.435 45.455 0.00 0.00 0.00 3.59
250 332 3.007506 TCTTGAGCCCAAAGTACATCGAA 59.992 43.478 0.00 0.00 0.00 3.71
251 333 3.410631 TGAGCCCAAAGTACATCGAAA 57.589 42.857 0.00 0.00 0.00 3.46
252 334 3.745799 TGAGCCCAAAGTACATCGAAAA 58.254 40.909 0.00 0.00 0.00 2.29
253 335 3.500680 TGAGCCCAAAGTACATCGAAAAC 59.499 43.478 0.00 0.00 0.00 2.43
254 336 3.482436 AGCCCAAAGTACATCGAAAACA 58.518 40.909 0.00 0.00 0.00 2.83
255 337 3.502211 AGCCCAAAGTACATCGAAAACAG 59.498 43.478 0.00 0.00 0.00 3.16
256 338 3.821841 CCCAAAGTACATCGAAAACAGC 58.178 45.455 0.00 0.00 0.00 4.40
257 339 3.502211 CCCAAAGTACATCGAAAACAGCT 59.498 43.478 0.00 0.00 0.00 4.24
258 340 4.378459 CCCAAAGTACATCGAAAACAGCTC 60.378 45.833 0.00 0.00 0.00 4.09
259 341 4.452455 CCAAAGTACATCGAAAACAGCTCT 59.548 41.667 0.00 0.00 0.00 4.09
260 342 5.049405 CCAAAGTACATCGAAAACAGCTCTT 60.049 40.000 0.00 0.00 0.00 2.85
271 353 1.848652 ACAGCTCTTCGGCCTAAGTA 58.151 50.000 16.06 3.47 0.00 2.24
282 364 2.165030 CGGCCTAAGTAAGACCGAAGAA 59.835 50.000 0.00 0.00 46.71 2.52
283 365 3.734293 CGGCCTAAGTAAGACCGAAGAAG 60.734 52.174 0.00 0.00 46.71 2.85
284 366 3.430513 GGCCTAAGTAAGACCGAAGAAGG 60.431 52.174 0.00 0.00 37.30 3.46
285 367 3.446516 GCCTAAGTAAGACCGAAGAAGGA 59.553 47.826 0.00 0.00 34.73 3.36
287 369 5.301298 GCCTAAGTAAGACCGAAGAAGGATA 59.699 44.000 0.00 0.00 34.73 2.59
289 371 6.320672 CCTAAGTAAGACCGAAGAAGGATACA 59.679 42.308 0.00 0.00 41.41 2.29
291 373 7.893124 AAGTAAGACCGAAGAAGGATACATA 57.107 36.000 0.00 0.00 41.41 2.29
292 374 7.893124 AGTAAGACCGAAGAAGGATACATAA 57.107 36.000 0.00 0.00 41.41 1.90
295 377 6.642707 AGACCGAAGAAGGATACATAAGAG 57.357 41.667 0.00 0.00 41.41 2.85
296 378 5.536916 AGACCGAAGAAGGATACATAAGAGG 59.463 44.000 0.00 0.00 41.41 3.69
297 379 4.589374 ACCGAAGAAGGATACATAAGAGGG 59.411 45.833 0.00 0.00 41.41 4.30
298 380 4.833380 CCGAAGAAGGATACATAAGAGGGA 59.167 45.833 0.00 0.00 41.41 4.20
299 381 5.279056 CCGAAGAAGGATACATAAGAGGGAC 60.279 48.000 0.00 0.00 41.41 4.46
300 382 5.563085 CGAAGAAGGATACATAAGAGGGACG 60.563 48.000 0.00 0.00 41.41 4.79
301 383 4.153411 AGAAGGATACATAAGAGGGACGG 58.847 47.826 0.00 0.00 41.41 4.79
303 385 2.179424 AGGATACATAAGAGGGACGGGT 59.821 50.000 0.00 0.00 41.41 5.28
304 386 2.970640 GGATACATAAGAGGGACGGGTT 59.029 50.000 0.00 0.00 0.00 4.11
306 388 4.776308 GGATACATAAGAGGGACGGGTTAT 59.224 45.833 0.00 0.00 0.00 1.89
307 389 5.954150 GGATACATAAGAGGGACGGGTTATA 59.046 44.000 0.00 0.00 0.00 0.98
308 390 6.610425 GGATACATAAGAGGGACGGGTTATAT 59.390 42.308 0.00 0.00 0.00 0.86
309 391 7.781693 GGATACATAAGAGGGACGGGTTATATA 59.218 40.741 0.00 0.00 0.00 0.86
310 392 9.193806 GATACATAAGAGGGACGGGTTATATAA 57.806 37.037 0.00 0.00 0.00 0.98
344 430 4.968181 CGAACTACGTCATACATTGTCGAT 59.032 41.667 0.00 0.00 38.87 3.59
345 431 5.454554 CGAACTACGTCATACATTGTCGATT 59.545 40.000 0.00 0.00 38.87 3.34
518 619 5.577164 GTCTAGTTGACGTTGCATGATAGTT 59.423 40.000 0.00 0.00 35.81 2.24
525 626 5.462068 TGACGTTGCATGATAGTTATAGCAC 59.538 40.000 0.00 0.00 28.22 4.40
526 627 5.601662 ACGTTGCATGATAGTTATAGCACT 58.398 37.500 0.00 0.00 28.22 4.40
527 628 6.049149 ACGTTGCATGATAGTTATAGCACTT 58.951 36.000 0.00 0.00 28.22 3.16
528 629 7.207383 ACGTTGCATGATAGTTATAGCACTTA 58.793 34.615 0.00 0.00 28.22 2.24
859 1056 1.178276 CTAGCTATGCTCCCTACCGG 58.822 60.000 0.00 0.00 40.44 5.28
1387 1626 1.812571 CTTTTAGCACCGGCAGTGATT 59.187 47.619 4.74 0.00 44.52 2.57
1508 1752 3.027412 GAGACAAGCATAGTGAGGGAGA 58.973 50.000 0.00 0.00 0.00 3.71
1553 1797 1.202604 GGTTGTCGGTTCTCTTGTCCA 60.203 52.381 0.00 0.00 0.00 4.02
1587 1831 1.818674 GGAATCGTCAAGGTGCCAAAT 59.181 47.619 0.00 0.00 0.00 2.32
1733 1978 1.889829 CACAATTTTTCCAGCCCCGTA 59.110 47.619 0.00 0.00 0.00 4.02
1737 1982 2.122783 TTTTTCCAGCCCCGTATCTG 57.877 50.000 0.00 0.00 0.00 2.90
1768 2013 3.491964 CGGCGGTCCAAATACTATCTTGA 60.492 47.826 0.00 0.00 0.00 3.02
1921 2176 4.112634 TCGAGTGCTTCCAAAAGATATCG 58.887 43.478 0.00 0.00 35.29 2.92
1924 2179 3.865745 AGTGCTTCCAAAAGATATCGTCG 59.134 43.478 0.00 0.00 34.14 5.12
1971 2267 5.747565 GAATGTGTTCGATGAAGACAACAA 58.252 37.500 12.60 0.00 46.03 2.83
1978 2274 6.258947 TGTTCGATGAAGACAACAATGTTGTA 59.741 34.615 28.90 15.67 41.31 2.41
1979 2275 6.223138 TCGATGAAGACAACAATGTTGTAC 57.777 37.500 28.90 21.98 41.31 2.90
1980 2276 5.989168 TCGATGAAGACAACAATGTTGTACT 59.011 36.000 28.90 22.86 41.31 2.73
1981 2277 6.481976 TCGATGAAGACAACAATGTTGTACTT 59.518 34.615 28.90 27.98 41.31 2.24
2000 2296 8.561738 TGTACTTAGTTGATTTTGAAGATCCC 57.438 34.615 0.00 0.00 0.00 3.85
2013 2309 1.471119 AGATCCCAGCATTGCACTTG 58.529 50.000 11.91 0.16 0.00 3.16
2065 2361 3.088532 CTCGAGGCCTCATAGATTAGCT 58.911 50.000 31.67 0.00 0.00 3.32
2088 2384 1.539827 GCAATGTCTTTGGGCTTACGT 59.460 47.619 0.00 0.00 35.75 3.57
2093 2389 0.680618 TCTTTGGGCTTACGTCCGAA 59.319 50.000 0.00 0.00 37.90 4.30
2213 2510 3.465210 TGCCAAATCCCACCCATAATCTA 59.535 43.478 0.00 0.00 0.00 1.98
2239 2536 3.263425 GGTTCCTTCCACTCATACCAAGA 59.737 47.826 0.00 0.00 0.00 3.02
2303 2600 1.285280 CCCCAAGACCACCATACTCA 58.715 55.000 0.00 0.00 0.00 3.41
2424 2723 4.720649 TTTAGAAGGAGATGAGTCCACG 57.279 45.455 0.00 0.00 39.34 4.94
2647 3291 4.712337 AGACAATACTACCTCTGGTCCAAG 59.288 45.833 0.00 0.00 37.09 3.61
2797 3445 8.008513 TGGAGAAGGAGTACTTATGTGAATAC 57.991 38.462 0.00 0.00 40.21 1.89
2976 3690 9.677567 GCAAGAAGACACTATTACAAATTTTCA 57.322 29.630 0.00 0.00 0.00 2.69
3012 3726 6.014669 TGTTGGGTATGATCTTTTTCCCTTTG 60.015 38.462 13.33 0.00 36.23 2.77
3031 3748 3.708403 TGCACCTGATTGAGAGTCATT 57.292 42.857 0.00 0.00 0.00 2.57
3035 3752 4.008330 CACCTGATTGAGAGTCATTTGCT 58.992 43.478 0.00 0.00 0.00 3.91
3080 3802 4.703093 TGCTACCTTACCAAAATGGCTTAC 59.297 41.667 0.00 0.00 42.67 2.34
3081 3803 4.948004 GCTACCTTACCAAAATGGCTTACT 59.052 41.667 0.00 0.00 42.67 2.24
3082 3804 6.117488 GCTACCTTACCAAAATGGCTTACTA 58.883 40.000 0.00 0.00 42.67 1.82
3084 3806 7.121611 GCTACCTTACCAAAATGGCTTACTAAA 59.878 37.037 0.00 0.00 42.67 1.85
3149 4922 5.994668 GCAAAACATTTTCCTCCAACCATTA 59.005 36.000 0.00 0.00 0.00 1.90
3309 5088 8.877195 AGTTATAAAAACCAAGTACTCTCTCCA 58.123 33.333 0.00 0.00 0.00 3.86
3313 5092 5.825593 AAACCAAGTACTCTCTCCAATCA 57.174 39.130 0.00 0.00 0.00 2.57
3616 6821 5.049060 TGTTGTGTGTAAGCAATACCATCAC 60.049 40.000 0.00 0.58 33.27 3.06
3633 6838 6.237901 ACCATCACAAGCTAACTGACAATAA 58.762 36.000 0.00 0.00 0.00 1.40
3765 6974 1.598130 GCTGAACAACACGCTCCCT 60.598 57.895 0.00 0.00 0.00 4.20
3885 7094 4.263243 GGCTCCATGCTAATGACCTTCTAT 60.263 45.833 0.00 0.00 42.39 1.98
3912 7121 1.381872 CCTCGTCAGGACCCTGGAT 60.382 63.158 15.43 0.00 43.65 3.41
3960 7169 4.457496 ACCATGACTGCCGAGGCG 62.457 66.667 9.78 6.99 45.51 5.52
4005 7214 2.124403 GTCCTCGGGGCGACTCTA 60.124 66.667 0.00 0.00 0.00 2.43
4055 7264 7.217200 GCAGTCTGGTTCATTATTCAGGTATA 58.783 38.462 1.14 0.00 0.00 1.47
4669 8555 8.079203 CGGATACTGATTGCTCATATATACTCC 58.921 40.741 0.00 0.00 0.00 3.85
4813 10757 1.275291 ACGAGGAGAAGAAAATCGGCA 59.725 47.619 0.00 0.00 37.69 5.69
4867 10814 2.741985 CGGTCTTGCGGTCATGCA 60.742 61.111 0.00 0.00 44.61 3.96
4868 10815 2.108514 CGGTCTTGCGGTCATGCAT 61.109 57.895 0.00 0.00 45.78 3.96
4926 10886 1.970114 GCAGTGCAGTGTCATGGCT 60.970 57.895 22.22 0.00 0.00 4.75
4938 10898 3.441572 GTGTCATGGCTTGAGTTTATGCT 59.558 43.478 2.94 0.00 34.17 3.79
4948 10908 6.051717 GCTTGAGTTTATGCTATCTTGGAGA 58.948 40.000 0.00 0.00 0.00 3.71
5011 10973 6.332735 AGGTGAATAAGACAAAAAGAAGGC 57.667 37.500 0.00 0.00 0.00 4.35
5083 11045 9.815936 ACAAGAAATAAAACGGAAATACTAACG 57.184 29.630 0.00 0.00 0.00 3.18
5084 11046 8.782327 CAAGAAATAAAACGGAAATACTAACGC 58.218 33.333 0.00 0.00 0.00 4.84
5085 11047 7.466805 AGAAATAAAACGGAAATACTAACGCC 58.533 34.615 0.00 0.00 0.00 5.68
5086 11048 5.739752 ATAAAACGGAAATACTAACGCCC 57.260 39.130 0.00 0.00 0.00 6.13
5087 11049 2.766345 AACGGAAATACTAACGCCCA 57.234 45.000 0.00 0.00 0.00 5.36
5088 11050 2.014335 ACGGAAATACTAACGCCCAC 57.986 50.000 0.00 0.00 0.00 4.61
5089 11051 1.275856 ACGGAAATACTAACGCCCACA 59.724 47.619 0.00 0.00 0.00 4.17
5090 11052 1.662122 CGGAAATACTAACGCCCACAC 59.338 52.381 0.00 0.00 0.00 3.82
5091 11053 1.662122 GGAAATACTAACGCCCACACG 59.338 52.381 0.00 0.00 39.50 4.49
5102 11064 3.481661 CCACACGTATGGGCGTTC 58.518 61.111 4.49 0.00 43.83 3.95
5103 11065 2.104253 CCACACGTATGGGCGTTCC 61.104 63.158 4.49 0.00 43.83 3.62
5118 11080 2.534396 TTCCCCAACTCGCCCACAT 61.534 57.895 0.00 0.00 0.00 3.21
5131 11093 4.063529 CACATGTGTGGGCGTTCT 57.936 55.556 18.03 0.00 42.10 3.01
5158 11120 1.292223 CCCACACGTCTGGATCGTT 59.708 57.895 11.92 0.00 39.55 3.85
5173 11135 5.361427 TGGATCGTTGTTCACTGTCTTTTA 58.639 37.500 0.00 0.00 0.00 1.52
5174 11136 5.995282 TGGATCGTTGTTCACTGTCTTTTAT 59.005 36.000 0.00 0.00 0.00 1.40
5209 11171 3.888930 ACGAAAAGGTGGATTTGATGTGT 59.111 39.130 0.00 0.00 0.00 3.72
5217 11179 4.242475 GTGGATTTGATGTGTCACGTAGA 58.758 43.478 0.00 0.00 33.11 2.59
5250 11212 1.021968 GTGGGCGTTGAAGAGTTTGT 58.978 50.000 0.00 0.00 0.00 2.83
5256 11218 2.290641 GCGTTGAAGAGTTTGTCCACAT 59.709 45.455 0.00 0.00 0.00 3.21
5307 11269 4.558095 GCTGTGTGGACGAACTAGTTTCTA 60.558 45.833 10.02 0.00 31.20 2.10
5308 11270 5.117355 TGTGTGGACGAACTAGTTTCTAG 57.883 43.478 10.02 4.86 31.20 2.43
5328 11290 1.480212 CCACACAGCCACCACCTAGA 61.480 60.000 0.00 0.00 0.00 2.43
5473 11438 3.244105 AACTGCAGTTGCGCGTAG 58.756 55.556 30.66 0.00 45.83 3.51
5503 11468 3.367292 CCAGATAAACACACATGGCAACC 60.367 47.826 0.00 0.00 0.00 3.77
5536 11501 6.779049 ACAATACATGGCAACTATGATTGGAT 59.221 34.615 0.00 0.00 33.53 3.41
5542 11507 3.947196 GGCAACTATGATTGGATCACACA 59.053 43.478 0.00 0.00 43.01 3.72
5553 11518 2.571202 TGGATCACACATGGCAACTAGA 59.429 45.455 0.00 0.00 37.61 2.43
5587 11552 8.482943 ACATGGCAACTACTGTTTGACTATATA 58.517 33.333 0.00 0.00 33.52 0.86
5633 11598 3.184986 GCAACTACGGTTTGATTACACGT 59.815 43.478 0.00 0.00 41.10 4.49
5645 11610 4.946445 TGATTACACGTGACAACTACCAA 58.054 39.130 25.01 2.11 0.00 3.67
5719 11685 4.634012 TTACAACTACACTTGCCATCCT 57.366 40.909 0.00 0.00 0.00 3.24
5792 11758 0.599558 ACCTAACGTAGCTGCGTCAA 59.400 50.000 29.76 19.27 45.00 3.18
5800 11766 2.731027 CGTAGCTGCGTCAAGACATGTA 60.731 50.000 16.66 0.00 0.00 2.29
5855 11821 7.789831 AGGTGGAGATGAGTAGTATTTATTGGA 59.210 37.037 0.00 0.00 0.00 3.53
5921 11887 4.275508 CTGCCCACACACAGCCCT 62.276 66.667 0.00 0.00 0.00 5.19
5922 11888 2.851588 TGCCCACACACAGCCCTA 60.852 61.111 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.159448 TGCCAATTATACGTGCAAGTGC 60.159 45.455 15.96 8.65 42.50 4.40
5 6 3.755965 TGCCAATTATACGTGCAAGTG 57.244 42.857 15.96 1.12 0.00 3.16
6 7 4.775058 TTTGCCAATTATACGTGCAAGT 57.225 36.364 10.83 10.83 42.25 3.16
7 8 4.920340 TGTTTTGCCAATTATACGTGCAAG 59.080 37.500 0.00 0.00 42.25 4.01
8 9 4.871513 TGTTTTGCCAATTATACGTGCAA 58.128 34.783 0.00 0.00 39.92 4.08
9 10 4.505313 TGTTTTGCCAATTATACGTGCA 57.495 36.364 0.00 0.00 0.00 4.57
10 11 5.005299 GGATTGTTTTGCCAATTATACGTGC 59.995 40.000 0.00 0.00 35.24 5.34
11 12 6.253298 CAGGATTGTTTTGCCAATTATACGTG 59.747 38.462 0.00 0.00 35.24 4.49
12 13 6.329496 CAGGATTGTTTTGCCAATTATACGT 58.671 36.000 0.00 0.00 35.24 3.57
13 14 5.231991 GCAGGATTGTTTTGCCAATTATACG 59.768 40.000 0.00 0.00 35.24 3.06
14 15 6.035975 GTGCAGGATTGTTTTGCCAATTATAC 59.964 38.462 0.00 0.00 35.24 1.47
15 16 6.105333 GTGCAGGATTGTTTTGCCAATTATA 58.895 36.000 0.00 0.00 35.24 0.98
16 17 4.937015 GTGCAGGATTGTTTTGCCAATTAT 59.063 37.500 0.00 0.00 35.24 1.28
17 18 4.314121 GTGCAGGATTGTTTTGCCAATTA 58.686 39.130 0.00 0.00 35.24 1.40
18 19 3.140623 GTGCAGGATTGTTTTGCCAATT 58.859 40.909 0.00 0.00 35.24 2.32
19 20 2.550639 GGTGCAGGATTGTTTTGCCAAT 60.551 45.455 0.00 0.00 37.74 3.16
20 21 1.202627 GGTGCAGGATTGTTTTGCCAA 60.203 47.619 0.00 0.00 37.03 4.52
21 22 0.392336 GGTGCAGGATTGTTTTGCCA 59.608 50.000 0.00 0.00 37.03 4.92
22 23 0.392336 TGGTGCAGGATTGTTTTGCC 59.608 50.000 0.00 0.00 37.03 4.52
23 24 1.069049 ACTGGTGCAGGATTGTTTTGC 59.931 47.619 0.00 0.00 35.51 3.68
24 25 3.068590 AGAACTGGTGCAGGATTGTTTTG 59.931 43.478 0.00 0.00 35.51 2.44
25 26 3.299503 AGAACTGGTGCAGGATTGTTTT 58.700 40.909 0.00 0.00 35.51 2.43
26 27 2.949447 AGAACTGGTGCAGGATTGTTT 58.051 42.857 0.00 0.00 35.51 2.83
27 28 2.664402 AGAACTGGTGCAGGATTGTT 57.336 45.000 0.00 0.00 35.51 2.83
28 29 2.639839 ACTAGAACTGGTGCAGGATTGT 59.360 45.455 0.00 0.00 35.51 2.71
29 30 3.340814 ACTAGAACTGGTGCAGGATTG 57.659 47.619 0.00 0.00 35.51 2.67
30 31 6.742644 GCATATACTAGAACTGGTGCAGGATT 60.743 42.308 0.00 0.00 35.51 3.01
31 32 5.279708 GCATATACTAGAACTGGTGCAGGAT 60.280 44.000 0.00 0.00 35.51 3.24
32 33 4.039245 GCATATACTAGAACTGGTGCAGGA 59.961 45.833 0.00 0.00 35.51 3.86
33 34 4.310769 GCATATACTAGAACTGGTGCAGG 58.689 47.826 0.00 0.00 35.51 4.85
34 35 3.983988 CGCATATACTAGAACTGGTGCAG 59.016 47.826 0.00 0.00 37.52 4.41
35 36 3.383505 ACGCATATACTAGAACTGGTGCA 59.616 43.478 0.00 0.00 0.00 4.57
36 37 3.978687 ACGCATATACTAGAACTGGTGC 58.021 45.455 0.00 0.00 0.00 5.01
37 38 6.555812 TCTACGCATATACTAGAACTGGTG 57.444 41.667 0.00 0.00 0.00 4.17
38 39 8.102047 ACTATCTACGCATATACTAGAACTGGT 58.898 37.037 0.00 0.00 0.00 4.00
39 40 8.495361 ACTATCTACGCATATACTAGAACTGG 57.505 38.462 0.00 0.00 0.00 4.00
44 45 9.043079 GCATGTACTATCTACGCATATACTAGA 57.957 37.037 0.00 0.00 0.00 2.43
45 46 8.827677 TGCATGTACTATCTACGCATATACTAG 58.172 37.037 0.00 0.00 0.00 2.57
46 47 8.610035 GTGCATGTACTATCTACGCATATACTA 58.390 37.037 6.69 0.00 0.00 1.82
47 48 7.120726 TGTGCATGTACTATCTACGCATATACT 59.879 37.037 15.25 0.00 0.00 2.12
48 49 7.248437 TGTGCATGTACTATCTACGCATATAC 58.752 38.462 15.25 0.00 0.00 1.47
49 50 7.385778 TGTGCATGTACTATCTACGCATATA 57.614 36.000 15.25 0.00 0.00 0.86
50 51 6.267496 TGTGCATGTACTATCTACGCATAT 57.733 37.500 15.25 0.00 0.00 1.78
51 52 5.699097 TGTGCATGTACTATCTACGCATA 57.301 39.130 15.25 0.00 0.00 3.14
52 53 4.584327 TGTGCATGTACTATCTACGCAT 57.416 40.909 15.25 0.00 0.00 4.73
53 54 4.298332 CATGTGCATGTACTATCTACGCA 58.702 43.478 15.25 0.00 34.23 5.24
54 55 3.121944 GCATGTGCATGTACTATCTACGC 59.878 47.826 15.25 3.80 40.80 4.42
55 56 4.893036 GCATGTGCATGTACTATCTACG 57.107 45.455 15.25 0.00 40.80 3.51
69 70 3.555547 TGACAATCTACGTATGCATGTGC 59.444 43.478 10.16 0.00 42.50 4.57
70 71 5.717038 TTGACAATCTACGTATGCATGTG 57.283 39.130 10.16 3.78 0.00 3.21
71 72 6.017934 GGAATTGACAATCTACGTATGCATGT 60.018 38.462 10.16 1.67 0.00 3.21
72 73 6.018016 TGGAATTGACAATCTACGTATGCATG 60.018 38.462 10.16 0.00 0.00 4.06
73 74 6.054941 TGGAATTGACAATCTACGTATGCAT 58.945 36.000 3.79 3.79 0.00 3.96
74 75 5.423886 TGGAATTGACAATCTACGTATGCA 58.576 37.500 0.05 0.00 0.00 3.96
75 76 5.984233 TGGAATTGACAATCTACGTATGC 57.016 39.130 0.05 0.00 0.00 3.14
76 77 6.640907 TCGATGGAATTGACAATCTACGTATG 59.359 38.462 0.05 0.00 29.84 2.39
77 78 6.745116 TCGATGGAATTGACAATCTACGTAT 58.255 36.000 0.05 0.00 29.84 3.06
78 79 6.139048 TCGATGGAATTGACAATCTACGTA 57.861 37.500 0.05 0.00 29.84 3.57
79 80 5.006153 TCGATGGAATTGACAATCTACGT 57.994 39.130 0.05 0.00 29.84 3.57
80 81 5.043903 ACTCGATGGAATTGACAATCTACG 58.956 41.667 0.05 4.43 32.08 3.51
81 82 6.042777 TGACTCGATGGAATTGACAATCTAC 58.957 40.000 0.05 0.00 32.08 2.59
82 83 6.220726 TGACTCGATGGAATTGACAATCTA 57.779 37.500 0.05 0.00 32.08 1.98
83 84 5.089970 TGACTCGATGGAATTGACAATCT 57.910 39.130 0.05 0.00 32.08 2.40
84 85 5.998454 ATGACTCGATGGAATTGACAATC 57.002 39.130 0.05 0.00 32.08 2.67
85 86 5.649395 ACAATGACTCGATGGAATTGACAAT 59.351 36.000 13.81 0.00 32.08 2.71
86 87 5.003160 ACAATGACTCGATGGAATTGACAA 58.997 37.500 13.81 0.00 32.08 3.18
87 88 4.578871 ACAATGACTCGATGGAATTGACA 58.421 39.130 13.81 0.00 32.08 3.58
88 89 4.034510 GGACAATGACTCGATGGAATTGAC 59.965 45.833 13.81 9.31 32.08 3.18
89 90 4.191544 GGACAATGACTCGATGGAATTGA 58.808 43.478 13.81 0.00 34.92 2.57
90 91 3.940852 TGGACAATGACTCGATGGAATTG 59.059 43.478 8.06 8.06 34.99 2.32
91 92 4.194640 CTGGACAATGACTCGATGGAATT 58.805 43.478 0.00 0.00 0.00 2.17
92 93 3.432749 CCTGGACAATGACTCGATGGAAT 60.433 47.826 0.00 0.00 0.00 3.01
93 94 2.093500 CCTGGACAATGACTCGATGGAA 60.093 50.000 0.00 0.00 0.00 3.53
94 95 1.482182 CCTGGACAATGACTCGATGGA 59.518 52.381 0.00 0.00 0.00 3.41
95 96 1.482182 TCCTGGACAATGACTCGATGG 59.518 52.381 0.00 0.00 0.00 3.51
96 97 2.932614 GTTCCTGGACAATGACTCGATG 59.067 50.000 0.00 0.00 0.00 3.84
97 98 2.567169 TGTTCCTGGACAATGACTCGAT 59.433 45.455 0.00 0.00 0.00 3.59
98 99 1.967779 TGTTCCTGGACAATGACTCGA 59.032 47.619 0.00 0.00 0.00 4.04
99 100 2.455674 TGTTCCTGGACAATGACTCG 57.544 50.000 0.00 0.00 0.00 4.18
100 101 3.503748 CCTTTGTTCCTGGACAATGACTC 59.496 47.826 17.96 0.00 39.12 3.36
101 102 3.490348 CCTTTGTTCCTGGACAATGACT 58.510 45.455 17.96 0.00 39.12 3.41
102 103 2.029918 GCCTTTGTTCCTGGACAATGAC 60.030 50.000 17.96 7.26 39.12 3.06
103 104 2.158475 AGCCTTTGTTCCTGGACAATGA 60.158 45.455 17.96 5.49 39.12 2.57
104 105 2.029649 CAGCCTTTGTTCCTGGACAATG 60.030 50.000 0.00 6.86 39.12 2.82
105 106 2.242043 CAGCCTTTGTTCCTGGACAAT 58.758 47.619 0.00 0.00 39.12 2.71
106 107 1.064017 ACAGCCTTTGTTCCTGGACAA 60.064 47.619 0.00 1.65 36.31 3.18
107 108 0.550914 ACAGCCTTTGTTCCTGGACA 59.449 50.000 0.00 0.00 36.31 4.02
108 109 3.421567 ACAGCCTTTGTTCCTGGAC 57.578 52.632 0.00 0.00 36.31 4.02
164 246 0.457853 CGAACCGCCGAAGAGATGAA 60.458 55.000 0.00 0.00 0.00 2.57
165 247 1.138883 CGAACCGCCGAAGAGATGA 59.861 57.895 0.00 0.00 0.00 2.92
166 248 1.878522 CCGAACCGCCGAAGAGATG 60.879 63.158 0.00 0.00 0.00 2.90
167 249 2.494918 CCGAACCGCCGAAGAGAT 59.505 61.111 0.00 0.00 0.00 2.75
168 250 4.430765 GCCGAACCGCCGAAGAGA 62.431 66.667 0.00 0.00 0.00 3.10
185 267 4.717629 TCTTCGGTGCGCAGTCGG 62.718 66.667 25.86 14.40 35.95 4.79
186 268 3.470567 GTCTTCGGTGCGCAGTCG 61.471 66.667 22.24 22.24 39.07 4.18
187 269 2.355837 TGTCTTCGGTGCGCAGTC 60.356 61.111 12.22 5.29 0.00 3.51
188 270 2.159819 ATCTGTCTTCGGTGCGCAGT 62.160 55.000 12.22 0.00 0.00 4.40
189 271 1.416813 GATCTGTCTTCGGTGCGCAG 61.417 60.000 12.22 0.00 0.00 5.18
190 272 1.446099 GATCTGTCTTCGGTGCGCA 60.446 57.895 5.66 5.66 0.00 6.09
191 273 0.737715 AAGATCTGTCTTCGGTGCGC 60.738 55.000 0.00 0.00 40.68 6.09
192 274 3.425578 AAGATCTGTCTTCGGTGCG 57.574 52.632 0.00 0.00 40.68 5.34
200 282 1.333636 CCTGGCCCGAAGATCTGTCT 61.334 60.000 0.00 0.00 35.82 3.41
201 283 1.144936 CCTGGCCCGAAGATCTGTC 59.855 63.158 0.00 0.00 0.00 3.51
202 284 3.036429 GCCTGGCCCGAAGATCTGT 62.036 63.158 7.66 0.00 0.00 3.41
203 285 2.203126 GCCTGGCCCGAAGATCTG 60.203 66.667 7.66 0.00 0.00 2.90
204 286 3.483869 GGCCTGGCCCGAAGATCT 61.484 66.667 27.77 0.00 44.06 2.75
232 314 3.500680 TGTTTTCGATGTACTTTGGGCTC 59.499 43.478 0.00 0.00 0.00 4.70
233 315 3.482436 TGTTTTCGATGTACTTTGGGCT 58.518 40.909 0.00 0.00 0.00 5.19
234 316 3.821841 CTGTTTTCGATGTACTTTGGGC 58.178 45.455 0.00 0.00 0.00 5.36
235 317 3.502211 AGCTGTTTTCGATGTACTTTGGG 59.498 43.478 0.00 0.00 0.00 4.12
236 318 4.452455 AGAGCTGTTTTCGATGTACTTTGG 59.548 41.667 0.00 0.00 0.00 3.28
237 319 5.597813 AGAGCTGTTTTCGATGTACTTTG 57.402 39.130 0.00 0.00 0.00 2.77
238 320 5.107453 CGAAGAGCTGTTTTCGATGTACTTT 60.107 40.000 15.68 0.00 46.67 2.66
239 321 4.386049 CGAAGAGCTGTTTTCGATGTACTT 59.614 41.667 15.68 0.00 46.67 2.24
240 322 3.921021 CGAAGAGCTGTTTTCGATGTACT 59.079 43.478 15.68 0.00 46.67 2.73
241 323 3.060895 CCGAAGAGCTGTTTTCGATGTAC 59.939 47.826 20.13 0.00 46.67 2.90
242 324 3.250744 CCGAAGAGCTGTTTTCGATGTA 58.749 45.455 20.13 0.00 46.67 2.29
243 325 2.069273 CCGAAGAGCTGTTTTCGATGT 58.931 47.619 20.13 0.00 46.67 3.06
244 326 1.201965 GCCGAAGAGCTGTTTTCGATG 60.202 52.381 20.13 9.81 46.67 3.84
245 327 1.079503 GCCGAAGAGCTGTTTTCGAT 58.920 50.000 20.13 0.00 46.67 3.59
246 328 0.949105 GGCCGAAGAGCTGTTTTCGA 60.949 55.000 20.13 0.00 46.67 3.71
247 329 0.951040 AGGCCGAAGAGCTGTTTTCG 60.951 55.000 14.40 14.40 44.17 3.46
248 330 2.094762 TAGGCCGAAGAGCTGTTTTC 57.905 50.000 0.00 0.00 0.00 2.29
249 331 2.224548 ACTTAGGCCGAAGAGCTGTTTT 60.225 45.455 29.73 4.03 0.00 2.43
250 332 1.348036 ACTTAGGCCGAAGAGCTGTTT 59.652 47.619 29.73 4.77 0.00 2.83
251 333 0.977395 ACTTAGGCCGAAGAGCTGTT 59.023 50.000 29.73 5.50 0.00 3.16
252 334 1.848652 TACTTAGGCCGAAGAGCTGT 58.151 50.000 29.73 12.01 0.00 4.40
253 335 2.427453 TCTTACTTAGGCCGAAGAGCTG 59.573 50.000 29.73 16.36 0.00 4.24
254 336 2.427812 GTCTTACTTAGGCCGAAGAGCT 59.572 50.000 29.73 11.95 0.00 4.09
255 337 2.481622 GGTCTTACTTAGGCCGAAGAGC 60.482 54.545 29.73 21.49 39.27 4.09
256 338 3.439895 GGTCTTACTTAGGCCGAAGAG 57.560 52.381 29.73 18.14 39.27 2.85
271 353 6.041069 CCTCTTATGTATCCTTCTTCGGTCTT 59.959 42.308 0.00 0.00 0.00 3.01
279 361 4.153411 CCGTCCCTCTTATGTATCCTTCT 58.847 47.826 0.00 0.00 0.00 2.85
282 364 2.179424 ACCCGTCCCTCTTATGTATCCT 59.821 50.000 0.00 0.00 0.00 3.24
283 365 2.606378 ACCCGTCCCTCTTATGTATCC 58.394 52.381 0.00 0.00 0.00 2.59
284 366 5.997384 ATAACCCGTCCCTCTTATGTATC 57.003 43.478 0.00 0.00 0.00 2.24
285 367 9.725206 ATTATATAACCCGTCCCTCTTATGTAT 57.275 33.333 0.00 0.00 0.00 2.29
287 369 8.319146 CAATTATATAACCCGTCCCTCTTATGT 58.681 37.037 0.00 0.00 0.00 2.29
289 371 8.445361 ACAATTATATAACCCGTCCCTCTTAT 57.555 34.615 0.00 0.00 0.00 1.73
291 373 6.758806 ACAATTATATAACCCGTCCCTCTT 57.241 37.500 0.00 0.00 0.00 2.85
292 374 7.860649 TTACAATTATATAACCCGTCCCTCT 57.139 36.000 0.00 0.00 0.00 3.69
433 526 9.125026 AGTTTATTTAGAGATTTCAATGCCGAT 57.875 29.630 0.00 0.00 0.00 4.18
464 557 5.472820 ACGATATACTCCCTCCGTTTCTAAG 59.527 44.000 0.00 0.00 0.00 2.18
505 606 7.171508 TGCTAAGTGCTATAACTATCATGCAAC 59.828 37.037 0.00 0.00 43.37 4.17
518 619 4.649218 TGTGTCATCCTGCTAAGTGCTATA 59.351 41.667 0.00 0.00 43.37 1.31
525 626 2.548875 GAGCTGTGTCATCCTGCTAAG 58.451 52.381 0.00 0.00 37.26 2.18
526 627 1.134995 CGAGCTGTGTCATCCTGCTAA 60.135 52.381 0.00 0.00 37.26 3.09
527 628 0.457443 CGAGCTGTGTCATCCTGCTA 59.543 55.000 0.00 0.00 37.26 3.49
528 629 1.217511 CGAGCTGTGTCATCCTGCT 59.782 57.895 0.00 0.00 39.44 4.24
859 1056 5.520288 CGTGTAATGTGGCATATATAGAGGC 59.480 44.000 0.00 0.00 0.00 4.70
1245 1484 2.476241 GCAAATCTTTTGCCTCCGTTTG 59.524 45.455 12.74 0.00 39.38 2.93
1272 1511 9.825109 AAACTCTGCTCCTCTCTTATTTAATAC 57.175 33.333 0.00 0.00 0.00 1.89
1508 1752 1.069765 CCAACCGGAGCGCTATGAT 59.930 57.895 11.50 0.00 0.00 2.45
1553 1797 1.078708 ATTCCGTCCGCGAATGGTT 60.079 52.632 8.23 0.00 41.33 3.67
1587 1831 1.073025 GCTCACATGGACACCACCA 59.927 57.895 0.00 0.00 44.41 4.17
1646 1890 3.407698 TCTTCTTCAAATGCCGCTACAA 58.592 40.909 0.00 0.00 0.00 2.41
1733 1978 2.963854 CGCCGATCGCTTGCAGAT 60.964 61.111 10.32 0.00 34.21 2.90
1790 2035 2.035783 GGCTCCCCCAAGGTCAAC 59.964 66.667 0.00 0.00 36.75 3.18
1835 2090 0.991920 CTGGGGCTAACTCTTTCCCA 59.008 55.000 0.00 0.00 44.59 4.37
1882 2137 3.056393 ACTCGAATGACGGGATTTACACA 60.056 43.478 0.00 0.00 46.62 3.72
1921 2176 3.878086 TTTGATGAACAGCTTGACGAC 57.122 42.857 0.00 0.00 0.00 4.34
1924 2179 5.566774 CGAGAATTTTGATGAACAGCTTGAC 59.433 40.000 0.00 0.00 0.00 3.18
1959 2255 8.677148 ACTAAGTACAACATTGTTGTCTTCAT 57.323 30.769 32.35 21.82 42.35 2.57
1960 2256 8.394877 CAACTAAGTACAACATTGTTGTCTTCA 58.605 33.333 32.35 16.58 42.35 3.02
1962 2258 8.500753 TCAACTAAGTACAACATTGTTGTCTT 57.499 30.769 32.35 30.33 42.35 3.01
1978 2274 6.151817 GCTGGGATCTTCAAAATCAACTAAGT 59.848 38.462 0.00 0.00 0.00 2.24
1979 2275 6.151648 TGCTGGGATCTTCAAAATCAACTAAG 59.848 38.462 0.00 0.00 0.00 2.18
1980 2276 6.009589 TGCTGGGATCTTCAAAATCAACTAA 58.990 36.000 0.00 0.00 0.00 2.24
1981 2277 5.569355 TGCTGGGATCTTCAAAATCAACTA 58.431 37.500 0.00 0.00 0.00 2.24
2000 2296 0.170561 GGCTCTCAAGTGCAATGCTG 59.829 55.000 6.82 0.00 36.36 4.41
2013 2309 1.334384 GGAAGGTGAGGGAGGCTCTC 61.334 65.000 15.23 11.11 0.00 3.20
2065 2361 1.412079 AAGCCCAAAGACATTGCACA 58.588 45.000 0.00 0.00 37.73 4.57
2088 2384 1.378762 CTCCCCTTGGCTTTTCGGA 59.621 57.895 0.00 0.00 0.00 4.55
2093 2389 0.560688 TTTGGACTCCCCTTGGCTTT 59.439 50.000 0.00 0.00 35.38 3.51
2129 2426 0.616371 CTACCATCACCGTGGGGAAA 59.384 55.000 14.69 4.39 43.77 3.13
2213 2510 3.456277 GGTATGAGTGGAAGGAACCTCAT 59.544 47.826 6.29 6.29 44.52 2.90
2239 2536 2.101582 CGTGCTCTAAGGCTAAGATGGT 59.898 50.000 0.00 0.00 0.00 3.55
2323 2620 3.949113 GGCCGAATGTAAGGTTAATTGGA 59.051 43.478 0.00 0.00 0.00 3.53
2514 3156 3.157087 CACATAGTAAATCCATGGCCCC 58.843 50.000 6.96 0.00 0.00 5.80
2598 3240 8.692110 ACACATGCAGTACATCAAATTAATTG 57.308 30.769 0.39 0.00 36.64 2.32
2693 3341 3.502211 CCGTACCATTGGATTAGCATTCC 59.498 47.826 10.37 0.00 0.00 3.01
2760 3408 8.312564 AGTACTCCTTCTCCAAACTAAATGTAC 58.687 37.037 0.00 0.00 0.00 2.90
2797 3445 9.035607 CAAAGTTGAATGCATACTACTAGTAGG 57.964 37.037 29.05 15.43 35.74 3.18
2920 3634 2.867647 GCCCAAGTTTTTCTGCATCCAC 60.868 50.000 0.00 0.00 0.00 4.02
2976 3690 3.135712 TCATACCCAACAACGGAGCATAT 59.864 43.478 0.00 0.00 0.00 1.78
3012 3726 3.427233 GCAAATGACTCTCAATCAGGTGC 60.427 47.826 0.00 0.00 34.54 5.01
3053 3775 6.136155 AGCCATTTTGGTAAGGTAGCATATT 58.864 36.000 0.00 0.00 40.46 1.28
3122 3952 4.273235 GGTTGGAGGAAAATGTTTTGCTTG 59.727 41.667 12.48 0.00 46.67 4.01
3221 4999 5.560724 TGGACTAAAATACTGAGCTTTGCT 58.439 37.500 0.00 0.00 43.88 3.91
3252 5031 5.774690 AGAAGGCAAGGTTTCACAAATATCA 59.225 36.000 0.00 0.00 0.00 2.15
3309 5088 7.903995 ATTGGTGCGTCAATTAATTTTGATT 57.096 28.000 0.00 0.00 37.88 2.57
3616 6821 8.932945 TCAGACTATTATTGTCAGTTAGCTTG 57.067 34.615 9.21 0.00 36.94 4.01
3633 6838 9.900710 GTGTACGAATAATCAGATTCAGACTAT 57.099 33.333 0.00 0.00 35.86 2.12
3705 6914 0.759959 TGTACTTGAGGCCCACGAAA 59.240 50.000 0.00 0.00 0.00 3.46
3912 7121 3.407967 GGCCAGTGGATCGGGGAA 61.408 66.667 15.20 0.00 32.04 3.97
4005 7214 0.670546 CAACGTTGGAGGCGATGACT 60.671 55.000 20.71 0.00 34.75 3.41
4669 8555 9.757227 TGAAGGAAAACAAACCAAAACATATAG 57.243 29.630 0.00 0.00 0.00 1.31
4848 10795 2.434884 CATGACCGCAAGACCGCT 60.435 61.111 0.00 0.00 43.02 5.52
4861 10808 1.219522 CGATCAGCAGCGATGCATGA 61.220 55.000 29.24 25.60 37.25 3.07
4867 10814 0.386838 TCATGACGATCAGCAGCGAT 59.613 50.000 0.00 0.10 0.00 4.58
4868 10815 0.248784 CTCATGACGATCAGCAGCGA 60.249 55.000 0.00 0.00 0.00 4.93
4926 10886 7.187824 ACTCTCCAAGATAGCATAAACTCAA 57.812 36.000 0.00 0.00 0.00 3.02
4938 10898 5.935945 TGGTTTGTTCAACTCTCCAAGATA 58.064 37.500 0.00 0.00 35.46 1.98
4948 10908 4.942761 AATCATGCTGGTTTGTTCAACT 57.057 36.364 0.00 0.00 35.46 3.16
4976 10936 6.070251 TGTCTTATTCACCTAGGATCTTTGCA 60.070 38.462 17.98 0.00 0.00 4.08
5070 11032 1.662122 GTGTGGGCGTTAGTATTTCCG 59.338 52.381 0.00 0.00 0.00 4.30
5071 11033 1.662122 CGTGTGGGCGTTAGTATTTCC 59.338 52.381 0.00 0.00 0.00 3.13
5072 11034 2.340337 ACGTGTGGGCGTTAGTATTTC 58.660 47.619 0.00 0.00 43.04 2.17
5073 11035 2.460757 ACGTGTGGGCGTTAGTATTT 57.539 45.000 0.00 0.00 43.04 1.40
5074 11036 3.450578 CATACGTGTGGGCGTTAGTATT 58.549 45.455 4.09 0.00 43.04 1.89
5075 11037 2.223876 CCATACGTGTGGGCGTTAGTAT 60.224 50.000 22.66 0.00 43.04 2.12
5076 11038 1.134753 CCATACGTGTGGGCGTTAGTA 59.865 52.381 22.66 0.00 43.04 1.82
5077 11039 0.108520 CCATACGTGTGGGCGTTAGT 60.109 55.000 22.66 0.00 43.04 2.24
5078 11040 2.673074 CCATACGTGTGGGCGTTAG 58.327 57.895 22.66 0.00 43.04 2.34
5079 11041 4.915298 CCATACGTGTGGGCGTTA 57.085 55.556 22.66 0.00 43.04 3.18
5098 11060 4.323477 TGGGCGAGTTGGGGAACG 62.323 66.667 0.00 0.00 0.00 3.95
5099 11061 2.671963 GTGGGCGAGTTGGGGAAC 60.672 66.667 0.00 0.00 0.00 3.62
5100 11062 2.534396 ATGTGGGCGAGTTGGGGAA 61.534 57.895 0.00 0.00 0.00 3.97
5101 11063 2.933287 ATGTGGGCGAGTTGGGGA 60.933 61.111 0.00 0.00 0.00 4.81
5102 11064 2.751436 CATGTGGGCGAGTTGGGG 60.751 66.667 0.00 0.00 0.00 4.96
5103 11065 2.034066 ACATGTGGGCGAGTTGGG 59.966 61.111 0.00 0.00 0.00 4.12
5104 11066 1.600636 ACACATGTGGGCGAGTTGG 60.601 57.895 28.64 0.77 34.19 3.77
5105 11067 1.575922 CACACATGTGGGCGAGTTG 59.424 57.895 28.64 12.76 42.10 3.16
5106 11068 4.063529 CACACATGTGGGCGAGTT 57.936 55.556 28.64 3.84 42.10 3.01
5118 11080 1.525077 GTTGGAGAACGCCCACACA 60.525 57.895 0.00 0.00 32.58 3.72
5131 11093 3.509137 GACGTGTGGGCGAGTTGGA 62.509 63.158 0.00 0.00 35.59 3.53
5158 11120 8.708742 CAAGATTCGTATAAAAGACAGTGAACA 58.291 33.333 0.00 0.00 0.00 3.18
5173 11135 5.120208 CACCTTTTCGTGTCAAGATTCGTAT 59.880 40.000 0.00 0.00 0.00 3.06
5174 11136 4.446385 CACCTTTTCGTGTCAAGATTCGTA 59.554 41.667 0.00 0.00 0.00 3.43
5209 11171 0.892358 ACCAGCCTCGTTCTACGTGA 60.892 55.000 0.00 0.00 43.14 4.35
5217 11179 2.111043 CCACACACCAGCCTCGTT 59.889 61.111 0.00 0.00 0.00 3.85
5250 11212 2.438254 GTGATGCGGGCATGTGGA 60.438 61.111 11.44 0.00 36.70 4.02
5293 11255 3.319972 TGTGTGGCTAGAAACTAGTTCGT 59.680 43.478 8.95 1.69 41.52 3.85
5307 11269 4.586235 GGTGGTGGCTGTGTGGCT 62.586 66.667 0.00 0.00 42.34 4.75
5308 11270 3.190738 TAGGTGGTGGCTGTGTGGC 62.191 63.158 0.00 0.00 42.18 5.01
5473 11438 2.030274 GTGTGTTTATCTGGTTGCCACC 60.030 50.000 0.00 0.00 44.56 4.61
5503 11468 5.879237 AGTTGCCATGTATTGTTAATCACG 58.121 37.500 0.00 0.00 0.00 4.35
5536 11501 5.411361 GTGTTTATCTAGTTGCCATGTGTGA 59.589 40.000 0.00 0.00 0.00 3.58
5542 11507 5.357878 CCATGTGTGTTTATCTAGTTGCCAT 59.642 40.000 0.00 0.00 0.00 4.40
5553 11518 5.070001 ACAGTAGTTGCCATGTGTGTTTAT 58.930 37.500 0.00 0.00 0.00 1.40
5587 11552 4.391830 CGTGTGTGATTAACTACTTGCCAT 59.608 41.667 0.00 0.00 0.00 4.40
5633 11598 7.523052 GCCATGTCTAATTTTTGGTAGTTGTCA 60.523 37.037 0.00 0.00 0.00 3.58
5719 11685 3.521531 TGGTTGGCAGATGTAGTTATCCA 59.478 43.478 0.00 0.00 0.00 3.41
5792 11758 4.379813 CGAAGCAAAAATGCCTACATGTCT 60.380 41.667 0.00 0.00 36.36 3.41
5800 11766 3.199764 GCACGAAGCAAAAATGCCT 57.800 47.368 0.00 0.00 44.79 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.