Multiple sequence alignment - TraesCS7A01G477500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G477500 | chr7A | 100.000 | 5930 | 0 | 0 | 1 | 5930 | 671126770 | 671120841 | 0.000000e+00 | 10951.0 |
1 | TraesCS7A01G477500 | chr7A | 86.906 | 1451 | 125 | 34 | 3460 | 4895 | 671074860 | 671073460 | 0.000000e+00 | 1567.0 |
2 | TraesCS7A01G477500 | chr7A | 92.561 | 820 | 60 | 1 | 5111 | 5930 | 92364754 | 92365572 | 0.000000e+00 | 1175.0 |
3 | TraesCS7A01G477500 | chr7A | 91.707 | 820 | 68 | 0 | 5111 | 5930 | 85952862 | 85953681 | 0.000000e+00 | 1138.0 |
4 | TraesCS7A01G477500 | chr7A | 91.707 | 820 | 68 | 0 | 5111 | 5930 | 556382849 | 556382030 | 0.000000e+00 | 1138.0 |
5 | TraesCS7A01G477500 | chr7A | 93.490 | 768 | 17 | 12 | 493 | 1240 | 671076664 | 671075910 | 0.000000e+00 | 1110.0 |
6 | TraesCS7A01G477500 | chr7A | 85.477 | 964 | 92 | 31 | 2351 | 3300 | 671075922 | 671074993 | 0.000000e+00 | 961.0 |
7 | TraesCS7A01G477500 | chr7A | 86.598 | 97 | 12 | 1 | 388 | 483 | 241728363 | 241728459 | 8.130000e-19 | 106.0 |
8 | TraesCS7A01G477500 | chr7D | 93.863 | 2721 | 141 | 13 | 1940 | 4646 | 579252648 | 579249940 | 0.000000e+00 | 4076.0 |
9 | TraesCS7A01G477500 | chr7D | 92.142 | 1209 | 68 | 14 | 747 | 1944 | 579253875 | 579252683 | 0.000000e+00 | 1681.0 |
10 | TraesCS7A01G477500 | chr7D | 86.204 | 1341 | 121 | 32 | 3568 | 4895 | 579197780 | 579196491 | 0.000000e+00 | 1393.0 |
11 | TraesCS7A01G477500 | chr7D | 91.474 | 821 | 69 | 1 | 5111 | 5930 | 583073493 | 583072673 | 0.000000e+00 | 1127.0 |
12 | TraesCS7A01G477500 | chr7D | 87.927 | 936 | 82 | 18 | 2351 | 3267 | 579198861 | 579197938 | 0.000000e+00 | 1074.0 |
13 | TraesCS7A01G477500 | chr7D | 88.457 | 771 | 39 | 20 | 493 | 1240 | 579199592 | 579198849 | 0.000000e+00 | 885.0 |
14 | TraesCS7A01G477500 | chr7D | 90.799 | 413 | 24 | 2 | 4671 | 5070 | 579247858 | 579247447 | 1.880000e-149 | 540.0 |
15 | TraesCS7A01G477500 | chr7D | 89.375 | 320 | 12 | 9 | 439 | 748 | 579254231 | 579253924 | 3.350000e-102 | 383.0 |
16 | TraesCS7A01G477500 | chr7D | 86.957 | 161 | 9 | 2 | 6 | 156 | 543095622 | 543095464 | 2.840000e-38 | 171.0 |
17 | TraesCS7A01G477500 | chr7B | 91.265 | 1225 | 73 | 13 | 3868 | 5070 | 643659672 | 643658460 | 0.000000e+00 | 1639.0 |
18 | TraesCS7A01G477500 | chr7B | 85.274 | 1460 | 140 | 42 | 3456 | 4895 | 643568336 | 643566932 | 0.000000e+00 | 1435.0 |
19 | TraesCS7A01G477500 | chr7B | 85.244 | 1457 | 140 | 44 | 3456 | 4895 | 643626164 | 643624766 | 0.000000e+00 | 1430.0 |
20 | TraesCS7A01G477500 | chr7B | 88.048 | 1004 | 81 | 25 | 2351 | 3331 | 643627258 | 643626271 | 0.000000e+00 | 1153.0 |
21 | TraesCS7A01G477500 | chr7B | 92.269 | 789 | 40 | 11 | 2351 | 3122 | 643698010 | 643697226 | 0.000000e+00 | 1099.0 |
22 | TraesCS7A01G477500 | chr7B | 88.144 | 970 | 49 | 30 | 312 | 1240 | 643698942 | 643697998 | 0.000000e+00 | 1094.0 |
23 | TraesCS7A01G477500 | chr7B | 92.481 | 665 | 23 | 16 | 585 | 1240 | 643570023 | 643569377 | 0.000000e+00 | 926.0 |
24 | TraesCS7A01G477500 | chr7B | 89.161 | 775 | 30 | 26 | 493 | 1240 | 643627993 | 643627246 | 0.000000e+00 | 917.0 |
25 | TraesCS7A01G477500 | chr7B | 92.936 | 637 | 20 | 15 | 585 | 1214 | 643610556 | 643609938 | 0.000000e+00 | 904.0 |
26 | TraesCS7A01G477500 | chr7B | 87.124 | 699 | 54 | 8 | 2353 | 3021 | 643569387 | 643568695 | 0.000000e+00 | 760.0 |
27 | TraesCS7A01G477500 | chr7B | 90.754 | 411 | 35 | 3 | 3114 | 3523 | 643672808 | 643672400 | 4.040000e-151 | 545.0 |
28 | TraesCS7A01G477500 | chr7B | 92.131 | 305 | 23 | 1 | 3566 | 3870 | 643672395 | 643672092 | 4.250000e-116 | 429.0 |
29 | TraesCS7A01G477500 | chr7B | 85.606 | 396 | 56 | 1 | 3660 | 4054 | 643378122 | 643377727 | 1.190000e-111 | 414.0 |
30 | TraesCS7A01G477500 | chr7B | 75.581 | 688 | 155 | 12 | 1239 | 1921 | 63947836 | 63948515 | 1.590000e-85 | 327.0 |
31 | TraesCS7A01G477500 | chr7B | 85.149 | 303 | 31 | 8 | 892 | 1192 | 643382171 | 643381881 | 1.250000e-76 | 298.0 |
32 | TraesCS7A01G477500 | chr7B | 91.398 | 186 | 16 | 0 | 4429 | 4614 | 643376749 | 643376564 | 7.630000e-64 | 255.0 |
33 | TraesCS7A01G477500 | chr7B | 92.683 | 123 | 9 | 0 | 4773 | 4895 | 643586825 | 643586703 | 1.700000e-40 | 178.0 |
34 | TraesCS7A01G477500 | chr7B | 91.954 | 87 | 6 | 1 | 70 | 156 | 586306580 | 586306495 | 2.900000e-23 | 121.0 |
35 | TraesCS7A01G477500 | chr7B | 94.667 | 75 | 4 | 0 | 208 | 282 | 586306364 | 586306290 | 3.750000e-22 | 117.0 |
36 | TraesCS7A01G477500 | chr7B | 85.577 | 104 | 14 | 1 | 381 | 483 | 631427094 | 631427197 | 2.260000e-19 | 108.0 |
37 | TraesCS7A01G477500 | chr7B | 83.810 | 105 | 16 | 1 | 381 | 484 | 52661540 | 52661436 | 1.360000e-16 | 99.0 |
38 | TraesCS7A01G477500 | chr7B | 83.810 | 105 | 16 | 1 | 381 | 484 | 52682895 | 52682791 | 1.360000e-16 | 99.0 |
39 | TraesCS7A01G477500 | chr7B | 77.564 | 156 | 26 | 7 | 3820 | 3970 | 654861481 | 654861330 | 1.060000e-12 | 86.1 |
40 | TraesCS7A01G477500 | chr7B | 97.561 | 41 | 1 | 0 | 115 | 155 | 643699150 | 643699110 | 2.960000e-08 | 71.3 |
41 | TraesCS7A01G477500 | chr1A | 92.805 | 820 | 56 | 2 | 5111 | 5930 | 551301416 | 551302232 | 0.000000e+00 | 1184.0 |
42 | TraesCS7A01G477500 | chr1A | 94.118 | 34 | 2 | 0 | 5066 | 5099 | 566216447 | 566216414 | 1.100000e-02 | 52.8 |
43 | TraesCS7A01G477500 | chr6D | 92.439 | 820 | 62 | 0 | 5111 | 5930 | 7446954 | 7447773 | 0.000000e+00 | 1171.0 |
44 | TraesCS7A01G477500 | chr6D | 83.654 | 104 | 16 | 1 | 381 | 483 | 428601756 | 428601859 | 4.890000e-16 | 97.1 |
45 | TraesCS7A01G477500 | chr6D | 91.111 | 45 | 3 | 1 | 5074 | 5118 | 337843271 | 337843314 | 6.420000e-05 | 60.2 |
46 | TraesCS7A01G477500 | chrUn | 84.609 | 1215 | 123 | 40 | 3456 | 4651 | 316974332 | 316975501 | 0.000000e+00 | 1149.0 |
47 | TraesCS7A01G477500 | chrUn | 92.342 | 666 | 23 | 16 | 585 | 1240 | 316972644 | 316973291 | 0.000000e+00 | 922.0 |
48 | TraesCS7A01G477500 | chrUn | 87.554 | 699 | 51 | 8 | 2353 | 3021 | 316973281 | 316973973 | 0.000000e+00 | 776.0 |
49 | TraesCS7A01G477500 | chrUn | 92.683 | 123 | 9 | 0 | 4773 | 4895 | 369638983 | 369639105 | 1.700000e-40 | 178.0 |
50 | TraesCS7A01G477500 | chr4A | 91.951 | 820 | 66 | 0 | 5111 | 5930 | 71082649 | 71081830 | 0.000000e+00 | 1149.0 |
51 | TraesCS7A01G477500 | chr4A | 83.019 | 106 | 18 | 0 | 381 | 486 | 716944082 | 716944187 | 4.890000e-16 | 97.1 |
52 | TraesCS7A01G477500 | chr4D | 91.717 | 821 | 64 | 3 | 5112 | 5930 | 19346480 | 19347298 | 0.000000e+00 | 1136.0 |
53 | TraesCS7A01G477500 | chr4D | 77.839 | 361 | 74 | 6 | 1988 | 2345 | 329001629 | 329001272 | 1.000000e-52 | 219.0 |
54 | TraesCS7A01G477500 | chr1D | 91.606 | 822 | 66 | 3 | 5111 | 5930 | 365752068 | 365751248 | 0.000000e+00 | 1133.0 |
55 | TraesCS7A01G477500 | chr1D | 88.068 | 704 | 75 | 4 | 1240 | 1939 | 326905253 | 326905951 | 0.000000e+00 | 826.0 |
56 | TraesCS7A01G477500 | chr3A | 88.620 | 703 | 74 | 5 | 1239 | 1939 | 543741400 | 543742098 | 0.000000e+00 | 850.0 |
57 | TraesCS7A01G477500 | chr3A | 87.874 | 701 | 78 | 4 | 1239 | 1939 | 502911975 | 502912668 | 0.000000e+00 | 817.0 |
58 | TraesCS7A01G477500 | chr3A | 89.286 | 280 | 25 | 2 | 1940 | 2218 | 543742134 | 543742409 | 4.400000e-91 | 346.0 |
59 | TraesCS7A01G477500 | chr3B | 87.694 | 707 | 77 | 6 | 1239 | 1939 | 597786193 | 597786895 | 0.000000e+00 | 815.0 |
60 | TraesCS7A01G477500 | chr3B | 89.435 | 407 | 38 | 2 | 1940 | 2345 | 597786931 | 597787333 | 5.300000e-140 | 508.0 |
61 | TraesCS7A01G477500 | chr2D | 86.648 | 704 | 87 | 6 | 1239 | 1941 | 427339033 | 427339730 | 0.000000e+00 | 773.0 |
62 | TraesCS7A01G477500 | chr2D | 85.440 | 364 | 52 | 1 | 1983 | 2345 | 101978488 | 101978851 | 1.560000e-100 | 377.0 |
63 | TraesCS7A01G477500 | chr4B | 84.529 | 711 | 81 | 12 | 1239 | 1944 | 587750558 | 587749872 | 0.000000e+00 | 676.0 |
64 | TraesCS7A01G477500 | chr4B | 88.308 | 402 | 41 | 3 | 1940 | 2340 | 587749839 | 587749443 | 1.500000e-130 | 477.0 |
65 | TraesCS7A01G477500 | chr4B | 86.946 | 406 | 46 | 3 | 1942 | 2345 | 72671910 | 72672310 | 3.260000e-122 | 449.0 |
66 | TraesCS7A01G477500 | chr5B | 88.557 | 402 | 39 | 4 | 1942 | 2341 | 403699741 | 403699345 | 1.160000e-131 | 481.0 |
67 | TraesCS7A01G477500 | chr5B | 86.538 | 104 | 14 | 0 | 381 | 484 | 34915437 | 34915540 | 1.350000e-21 | 115.0 |
68 | TraesCS7A01G477500 | chr5B | 93.056 | 72 | 2 | 2 | 1313 | 1384 | 684191417 | 684191485 | 1.050000e-17 | 102.0 |
69 | TraesCS7A01G477500 | chr2B | 82.133 | 347 | 54 | 4 | 1940 | 2285 | 400367748 | 400367409 | 2.090000e-74 | 291.0 |
70 | TraesCS7A01G477500 | chr2B | 74.239 | 493 | 115 | 11 | 1455 | 1941 | 704427534 | 704427048 | 4.690000e-46 | 196.0 |
71 | TraesCS7A01G477500 | chr5A | 86.667 | 105 | 13 | 1 | 381 | 484 | 480119434 | 480119538 | 1.350000e-21 | 115.0 |
72 | TraesCS7A01G477500 | chr5A | 88.136 | 59 | 7 | 0 | 98 | 156 | 71241212 | 71241154 | 2.960000e-08 | 71.3 |
73 | TraesCS7A01G477500 | chr5D | 86.869 | 99 | 8 | 5 | 283 | 377 | 557349427 | 557349524 | 8.130000e-19 | 106.0 |
74 | TraesCS7A01G477500 | chr5D | 86.139 | 101 | 8 | 6 | 283 | 378 | 557340704 | 557340803 | 2.920000e-18 | 104.0 |
75 | TraesCS7A01G477500 | chr5D | 86.000 | 100 | 9 | 5 | 283 | 378 | 557370795 | 557370893 | 1.050000e-17 | 102.0 |
76 | TraesCS7A01G477500 | chr5D | 86.000 | 100 | 9 | 5 | 283 | 378 | 564743251 | 564743349 | 1.050000e-17 | 102.0 |
77 | TraesCS7A01G477500 | chr3D | 84.112 | 107 | 16 | 1 | 381 | 486 | 66312275 | 66312169 | 1.050000e-17 | 102.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G477500 | chr7A | 671120841 | 671126770 | 5929 | True | 10951.000000 | 10951 | 100.000000 | 1 | 5930 | 1 | chr7A.!!$R2 | 5929 |
1 | TraesCS7A01G477500 | chr7A | 671073460 | 671076664 | 3204 | True | 1212.666667 | 1567 | 88.624333 | 493 | 4895 | 3 | chr7A.!!$R3 | 4402 |
2 | TraesCS7A01G477500 | chr7A | 92364754 | 92365572 | 818 | False | 1175.000000 | 1175 | 92.561000 | 5111 | 5930 | 1 | chr7A.!!$F2 | 819 |
3 | TraesCS7A01G477500 | chr7A | 85952862 | 85953681 | 819 | False | 1138.000000 | 1138 | 91.707000 | 5111 | 5930 | 1 | chr7A.!!$F1 | 819 |
4 | TraesCS7A01G477500 | chr7A | 556382030 | 556382849 | 819 | True | 1138.000000 | 1138 | 91.707000 | 5111 | 5930 | 1 | chr7A.!!$R1 | 819 |
5 | TraesCS7A01G477500 | chr7D | 579247447 | 579254231 | 6784 | True | 1670.000000 | 4076 | 91.544750 | 439 | 5070 | 4 | chr7D.!!$R4 | 4631 |
6 | TraesCS7A01G477500 | chr7D | 583072673 | 583073493 | 820 | True | 1127.000000 | 1127 | 91.474000 | 5111 | 5930 | 1 | chr7D.!!$R2 | 819 |
7 | TraesCS7A01G477500 | chr7D | 579196491 | 579199592 | 3101 | True | 1117.333333 | 1393 | 87.529333 | 493 | 4895 | 3 | chr7D.!!$R3 | 4402 |
8 | TraesCS7A01G477500 | chr7B | 643658460 | 643659672 | 1212 | True | 1639.000000 | 1639 | 91.265000 | 3868 | 5070 | 1 | chr7B.!!$R5 | 1202 |
9 | TraesCS7A01G477500 | chr7B | 643624766 | 643627993 | 3227 | True | 1166.666667 | 1430 | 87.484333 | 493 | 4895 | 3 | chr7B.!!$R10 | 4402 |
10 | TraesCS7A01G477500 | chr7B | 643566932 | 643570023 | 3091 | True | 1040.333333 | 1435 | 88.293000 | 585 | 4895 | 3 | chr7B.!!$R9 | 4310 |
11 | TraesCS7A01G477500 | chr7B | 643609938 | 643610556 | 618 | True | 904.000000 | 904 | 92.936000 | 585 | 1214 | 1 | chr7B.!!$R4 | 629 |
12 | TraesCS7A01G477500 | chr7B | 643697226 | 643699150 | 1924 | True | 754.766667 | 1099 | 92.658000 | 115 | 3122 | 3 | chr7B.!!$R12 | 3007 |
13 | TraesCS7A01G477500 | chr7B | 643672092 | 643672808 | 716 | True | 487.000000 | 545 | 91.442500 | 3114 | 3870 | 2 | chr7B.!!$R11 | 756 |
14 | TraesCS7A01G477500 | chr7B | 63947836 | 63948515 | 679 | False | 327.000000 | 327 | 75.581000 | 1239 | 1921 | 1 | chr7B.!!$F1 | 682 |
15 | TraesCS7A01G477500 | chr7B | 643376564 | 643382171 | 5607 | True | 322.333333 | 414 | 87.384333 | 892 | 4614 | 3 | chr7B.!!$R8 | 3722 |
16 | TraesCS7A01G477500 | chr1A | 551301416 | 551302232 | 816 | False | 1184.000000 | 1184 | 92.805000 | 5111 | 5930 | 1 | chr1A.!!$F1 | 819 |
17 | TraesCS7A01G477500 | chr6D | 7446954 | 7447773 | 819 | False | 1171.000000 | 1171 | 92.439000 | 5111 | 5930 | 1 | chr6D.!!$F1 | 819 |
18 | TraesCS7A01G477500 | chrUn | 316972644 | 316975501 | 2857 | False | 949.000000 | 1149 | 88.168333 | 585 | 4651 | 3 | chrUn.!!$F2 | 4066 |
19 | TraesCS7A01G477500 | chr4A | 71081830 | 71082649 | 819 | True | 1149.000000 | 1149 | 91.951000 | 5111 | 5930 | 1 | chr4A.!!$R1 | 819 |
20 | TraesCS7A01G477500 | chr4D | 19346480 | 19347298 | 818 | False | 1136.000000 | 1136 | 91.717000 | 5112 | 5930 | 1 | chr4D.!!$F1 | 818 |
21 | TraesCS7A01G477500 | chr1D | 365751248 | 365752068 | 820 | True | 1133.000000 | 1133 | 91.606000 | 5111 | 5930 | 1 | chr1D.!!$R1 | 819 |
22 | TraesCS7A01G477500 | chr1D | 326905253 | 326905951 | 698 | False | 826.000000 | 826 | 88.068000 | 1240 | 1939 | 1 | chr1D.!!$F1 | 699 |
23 | TraesCS7A01G477500 | chr3A | 502911975 | 502912668 | 693 | False | 817.000000 | 817 | 87.874000 | 1239 | 1939 | 1 | chr3A.!!$F1 | 700 |
24 | TraesCS7A01G477500 | chr3A | 543741400 | 543742409 | 1009 | False | 598.000000 | 850 | 88.953000 | 1239 | 2218 | 2 | chr3A.!!$F2 | 979 |
25 | TraesCS7A01G477500 | chr3B | 597786193 | 597787333 | 1140 | False | 661.500000 | 815 | 88.564500 | 1239 | 2345 | 2 | chr3B.!!$F1 | 1106 |
26 | TraesCS7A01G477500 | chr2D | 427339033 | 427339730 | 697 | False | 773.000000 | 773 | 86.648000 | 1239 | 1941 | 1 | chr2D.!!$F2 | 702 |
27 | TraesCS7A01G477500 | chr4B | 587749443 | 587750558 | 1115 | True | 576.500000 | 676 | 86.418500 | 1239 | 2340 | 2 | chr4B.!!$R1 | 1101 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
40 | 41 | 0.392336 | TGGCAAAACAATCCTGCACC | 59.608 | 50.000 | 0.00 | 0.0 | 37.83 | 5.01 | F |
167 | 249 | 0.456824 | CAGCTAGCGCTCGAAGTTCA | 60.457 | 55.000 | 16.34 | 0.0 | 45.15 | 3.18 | F |
168 | 250 | 0.457851 | AGCTAGCGCTCGAAGTTCAT | 59.542 | 50.000 | 16.34 | 0.0 | 45.15 | 2.57 | F |
183 | 265 | 0.457853 | TTCATCTCTTCGGCGGTTCG | 60.458 | 55.000 | 7.21 | 0.0 | 0.00 | 3.95 | F |
2093 | 2389 | 0.680618 | TCTTTGGGCTTACGTCCGAA | 59.319 | 50.000 | 0.00 | 0.0 | 37.90 | 4.30 | F |
2303 | 2600 | 1.285280 | CCCCAAGACCACCATACTCA | 58.715 | 55.000 | 0.00 | 0.0 | 0.00 | 3.41 | F |
3912 | 7121 | 1.381872 | CCTCGTCAGGACCCTGGAT | 60.382 | 63.158 | 15.43 | 0.0 | 43.65 | 3.41 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2000 | 2296 | 0.170561 | GGCTCTCAAGTGCAATGCTG | 59.829 | 55.000 | 6.82 | 0.00 | 36.36 | 4.41 | R |
2093 | 2389 | 0.560688 | TTTGGACTCCCCTTGGCTTT | 59.439 | 50.000 | 0.00 | 0.00 | 35.38 | 3.51 | R |
2129 | 2426 | 0.616371 | CTACCATCACCGTGGGGAAA | 59.384 | 55.000 | 14.69 | 4.39 | 43.77 | 3.13 | R |
2213 | 2510 | 3.456277 | GGTATGAGTGGAAGGAACCTCAT | 59.544 | 47.826 | 6.29 | 6.29 | 44.52 | 2.90 | R |
4005 | 7214 | 0.670546 | CAACGTTGGAGGCGATGACT | 60.671 | 55.000 | 20.71 | 0.00 | 34.75 | 3.41 | R |
4669 | 8555 | 9.757227 | TGAAGGAAAACAAACCAAAACATATAG | 57.243 | 29.630 | 0.00 | 0.00 | 0.00 | 1.31 | R |
5077 | 11039 | 0.108520 | CCATACGTGTGGGCGTTAGT | 60.109 | 55.000 | 22.66 | 0.00 | 43.04 | 2.24 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
24 | 25 | 2.450160 | GCACTTGCACGTATAATTGGC | 58.550 | 47.619 | 0.00 | 0.00 | 41.59 | 4.52 |
25 | 26 | 2.159448 | GCACTTGCACGTATAATTGGCA | 60.159 | 45.455 | 0.00 | 0.00 | 41.59 | 4.92 |
26 | 27 | 3.671971 | GCACTTGCACGTATAATTGGCAA | 60.672 | 43.478 | 0.68 | 0.68 | 41.67 | 4.52 |
27 | 28 | 4.480541 | CACTTGCACGTATAATTGGCAAA | 58.519 | 39.130 | 3.01 | 0.00 | 43.08 | 3.68 |
28 | 29 | 4.920340 | CACTTGCACGTATAATTGGCAAAA | 59.080 | 37.500 | 3.01 | 0.00 | 43.08 | 2.44 |
29 | 30 | 4.920927 | ACTTGCACGTATAATTGGCAAAAC | 59.079 | 37.500 | 3.01 | 0.00 | 43.08 | 2.43 |
30 | 31 | 4.505313 | TGCACGTATAATTGGCAAAACA | 57.495 | 36.364 | 3.01 | 0.00 | 0.00 | 2.83 |
31 | 32 | 4.871513 | TGCACGTATAATTGGCAAAACAA | 58.128 | 34.783 | 3.01 | 0.00 | 34.41 | 2.83 |
32 | 33 | 5.473931 | TGCACGTATAATTGGCAAAACAAT | 58.526 | 33.333 | 3.01 | 0.00 | 42.56 | 2.71 |
33 | 34 | 5.574830 | TGCACGTATAATTGGCAAAACAATC | 59.425 | 36.000 | 3.01 | 0.00 | 40.01 | 2.67 |
34 | 35 | 5.005299 | GCACGTATAATTGGCAAAACAATCC | 59.995 | 40.000 | 3.01 | 0.00 | 40.01 | 3.01 |
35 | 36 | 6.329496 | CACGTATAATTGGCAAAACAATCCT | 58.671 | 36.000 | 3.01 | 0.00 | 40.01 | 3.24 |
36 | 37 | 6.253298 | CACGTATAATTGGCAAAACAATCCTG | 59.747 | 38.462 | 3.01 | 0.00 | 40.01 | 3.86 |
37 | 38 | 5.231991 | CGTATAATTGGCAAAACAATCCTGC | 59.768 | 40.000 | 3.01 | 0.00 | 40.01 | 4.85 |
38 | 39 | 3.488778 | AATTGGCAAAACAATCCTGCA | 57.511 | 38.095 | 3.01 | 0.00 | 40.01 | 4.41 |
39 | 40 | 2.237393 | TTGGCAAAACAATCCTGCAC | 57.763 | 45.000 | 0.00 | 0.00 | 37.83 | 4.57 |
40 | 41 | 0.392336 | TGGCAAAACAATCCTGCACC | 59.608 | 50.000 | 0.00 | 0.00 | 37.83 | 5.01 |
41 | 42 | 0.392336 | GGCAAAACAATCCTGCACCA | 59.608 | 50.000 | 0.00 | 0.00 | 37.83 | 4.17 |
42 | 43 | 1.606224 | GGCAAAACAATCCTGCACCAG | 60.606 | 52.381 | 0.00 | 0.00 | 37.83 | 4.00 |
43 | 44 | 1.069049 | GCAAAACAATCCTGCACCAGT | 59.931 | 47.619 | 0.00 | 0.00 | 36.09 | 4.00 |
44 | 45 | 2.483538 | GCAAAACAATCCTGCACCAGTT | 60.484 | 45.455 | 0.00 | 0.00 | 36.09 | 3.16 |
45 | 46 | 3.383761 | CAAAACAATCCTGCACCAGTTC | 58.616 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
46 | 47 | 2.664402 | AACAATCCTGCACCAGTTCT | 57.336 | 45.000 | 0.00 | 0.00 | 0.00 | 3.01 |
47 | 48 | 3.788227 | AACAATCCTGCACCAGTTCTA | 57.212 | 42.857 | 0.00 | 0.00 | 0.00 | 2.10 |
48 | 49 | 3.340814 | ACAATCCTGCACCAGTTCTAG | 57.659 | 47.619 | 0.00 | 0.00 | 0.00 | 2.43 |
49 | 50 | 2.639839 | ACAATCCTGCACCAGTTCTAGT | 59.360 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
50 | 51 | 3.838317 | ACAATCCTGCACCAGTTCTAGTA | 59.162 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
51 | 52 | 4.471386 | ACAATCCTGCACCAGTTCTAGTAT | 59.529 | 41.667 | 0.00 | 0.00 | 0.00 | 2.12 |
52 | 53 | 5.661312 | ACAATCCTGCACCAGTTCTAGTATA | 59.339 | 40.000 | 0.00 | 0.00 | 0.00 | 1.47 |
53 | 54 | 6.327626 | ACAATCCTGCACCAGTTCTAGTATAT | 59.672 | 38.462 | 0.00 | 0.00 | 0.00 | 0.86 |
54 | 55 | 5.791336 | TCCTGCACCAGTTCTAGTATATG | 57.209 | 43.478 | 0.00 | 0.00 | 0.00 | 1.78 |
55 | 56 | 4.039245 | TCCTGCACCAGTTCTAGTATATGC | 59.961 | 45.833 | 0.00 | 0.00 | 0.00 | 3.14 |
56 | 57 | 3.977427 | TGCACCAGTTCTAGTATATGCG | 58.023 | 45.455 | 0.00 | 0.00 | 34.56 | 4.73 |
57 | 58 | 3.383505 | TGCACCAGTTCTAGTATATGCGT | 59.616 | 43.478 | 0.00 | 0.00 | 34.56 | 5.24 |
58 | 59 | 4.581409 | TGCACCAGTTCTAGTATATGCGTA | 59.419 | 41.667 | 0.00 | 0.00 | 34.56 | 4.42 |
59 | 60 | 5.154932 | GCACCAGTTCTAGTATATGCGTAG | 58.845 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
60 | 61 | 5.048921 | GCACCAGTTCTAGTATATGCGTAGA | 60.049 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
61 | 62 | 6.349445 | GCACCAGTTCTAGTATATGCGTAGAT | 60.349 | 42.308 | 0.00 | 0.00 | 0.00 | 1.98 |
62 | 63 | 7.148289 | GCACCAGTTCTAGTATATGCGTAGATA | 60.148 | 40.741 | 0.00 | 0.00 | 0.00 | 1.98 |
63 | 64 | 8.391859 | CACCAGTTCTAGTATATGCGTAGATAG | 58.608 | 40.741 | 0.00 | 0.00 | 0.00 | 2.08 |
64 | 65 | 8.102047 | ACCAGTTCTAGTATATGCGTAGATAGT | 58.898 | 37.037 | 1.16 | 1.16 | 0.00 | 2.12 |
65 | 66 | 9.597170 | CCAGTTCTAGTATATGCGTAGATAGTA | 57.403 | 37.037 | 3.23 | 3.23 | 0.00 | 1.82 |
70 | 71 | 9.043079 | TCTAGTATATGCGTAGATAGTACATGC | 57.957 | 37.037 | 0.00 | 0.00 | 0.00 | 4.06 |
71 | 72 | 7.625828 | AGTATATGCGTAGATAGTACATGCA | 57.374 | 36.000 | 0.00 | 0.00 | 35.10 | 3.96 |
72 | 73 | 7.473366 | AGTATATGCGTAGATAGTACATGCAC | 58.527 | 38.462 | 0.00 | 0.00 | 33.21 | 4.57 |
73 | 74 | 4.584327 | ATGCGTAGATAGTACATGCACA | 57.416 | 40.909 | 0.00 | 0.00 | 33.21 | 4.57 |
74 | 75 | 4.584327 | TGCGTAGATAGTACATGCACAT | 57.416 | 40.909 | 0.00 | 0.00 | 0.00 | 3.21 |
75 | 76 | 4.298332 | TGCGTAGATAGTACATGCACATG | 58.702 | 43.478 | 9.06 | 9.06 | 44.15 | 3.21 |
76 | 77 | 3.121944 | GCGTAGATAGTACATGCACATGC | 59.878 | 47.826 | 10.50 | 0.00 | 42.39 | 4.06 |
90 | 91 | 4.120646 | GCACATGCATACGTAGATTGTC | 57.879 | 45.455 | 0.00 | 0.00 | 41.59 | 3.18 |
91 | 92 | 3.555547 | GCACATGCATACGTAGATTGTCA | 59.444 | 43.478 | 0.00 | 0.00 | 41.59 | 3.58 |
92 | 93 | 4.033932 | GCACATGCATACGTAGATTGTCAA | 59.966 | 41.667 | 0.00 | 0.00 | 41.59 | 3.18 |
93 | 94 | 5.277490 | GCACATGCATACGTAGATTGTCAAT | 60.277 | 40.000 | 0.00 | 0.00 | 41.59 | 2.57 |
94 | 95 | 6.718388 | CACATGCATACGTAGATTGTCAATT | 58.282 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
95 | 96 | 6.847792 | CACATGCATACGTAGATTGTCAATTC | 59.152 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
96 | 97 | 5.984233 | TGCATACGTAGATTGTCAATTCC | 57.016 | 39.130 | 0.08 | 0.00 | 0.00 | 3.01 |
97 | 98 | 5.423886 | TGCATACGTAGATTGTCAATTCCA | 58.576 | 37.500 | 0.08 | 0.00 | 0.00 | 3.53 |
98 | 99 | 6.054941 | TGCATACGTAGATTGTCAATTCCAT | 58.945 | 36.000 | 0.08 | 0.00 | 0.00 | 3.41 |
99 | 100 | 6.202762 | TGCATACGTAGATTGTCAATTCCATC | 59.797 | 38.462 | 0.08 | 0.00 | 0.00 | 3.51 |
100 | 101 | 6.616471 | GCATACGTAGATTGTCAATTCCATCG | 60.616 | 42.308 | 0.08 | 4.31 | 0.00 | 3.84 |
101 | 102 | 5.006153 | ACGTAGATTGTCAATTCCATCGA | 57.994 | 39.130 | 0.00 | 0.00 | 0.00 | 3.59 |
102 | 103 | 5.043903 | ACGTAGATTGTCAATTCCATCGAG | 58.956 | 41.667 | 0.00 | 0.00 | 0.00 | 4.04 |
103 | 104 | 5.043903 | CGTAGATTGTCAATTCCATCGAGT | 58.956 | 41.667 | 0.00 | 0.00 | 0.00 | 4.18 |
104 | 105 | 5.174035 | CGTAGATTGTCAATTCCATCGAGTC | 59.826 | 44.000 | 0.00 | 0.00 | 0.00 | 3.36 |
105 | 106 | 5.089970 | AGATTGTCAATTCCATCGAGTCA | 57.910 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
106 | 107 | 5.678583 | AGATTGTCAATTCCATCGAGTCAT | 58.321 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
107 | 108 | 6.118170 | AGATTGTCAATTCCATCGAGTCATT | 58.882 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
108 | 109 | 5.550232 | TTGTCAATTCCATCGAGTCATTG | 57.450 | 39.130 | 0.00 | 0.00 | 0.00 | 2.82 |
109 | 110 | 4.578871 | TGTCAATTCCATCGAGTCATTGT | 58.421 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
110 | 111 | 4.631377 | TGTCAATTCCATCGAGTCATTGTC | 59.369 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
111 | 112 | 4.034510 | GTCAATTCCATCGAGTCATTGTCC | 59.965 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
112 | 113 | 3.912496 | ATTCCATCGAGTCATTGTCCA | 57.088 | 42.857 | 0.00 | 0.00 | 0.00 | 4.02 |
113 | 114 | 2.967599 | TCCATCGAGTCATTGTCCAG | 57.032 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
146 | 147 | 3.113322 | GTTGCATGCATATGACAGCAAG | 58.887 | 45.455 | 23.37 | 6.52 | 44.88 | 4.01 |
164 | 246 | 2.492090 | CCAGCTAGCGCTCGAAGT | 59.508 | 61.111 | 16.34 | 0.00 | 45.15 | 3.01 |
165 | 247 | 1.153745 | CCAGCTAGCGCTCGAAGTT | 60.154 | 57.895 | 16.34 | 0.00 | 45.15 | 2.66 |
166 | 248 | 1.142778 | CCAGCTAGCGCTCGAAGTTC | 61.143 | 60.000 | 16.34 | 0.00 | 45.15 | 3.01 |
167 | 249 | 0.456824 | CAGCTAGCGCTCGAAGTTCA | 60.457 | 55.000 | 16.34 | 0.00 | 45.15 | 3.18 |
168 | 250 | 0.457851 | AGCTAGCGCTCGAAGTTCAT | 59.542 | 50.000 | 16.34 | 0.00 | 45.15 | 2.57 |
169 | 251 | 0.849579 | GCTAGCGCTCGAAGTTCATC | 59.150 | 55.000 | 16.34 | 0.00 | 0.00 | 2.92 |
170 | 252 | 1.535015 | GCTAGCGCTCGAAGTTCATCT | 60.535 | 52.381 | 16.34 | 0.00 | 0.00 | 2.90 |
171 | 253 | 2.380660 | CTAGCGCTCGAAGTTCATCTC | 58.619 | 52.381 | 16.34 | 0.00 | 0.00 | 2.75 |
172 | 254 | 0.814457 | AGCGCTCGAAGTTCATCTCT | 59.186 | 50.000 | 2.64 | 0.00 | 0.00 | 3.10 |
173 | 255 | 1.203523 | AGCGCTCGAAGTTCATCTCTT | 59.796 | 47.619 | 2.64 | 0.00 | 0.00 | 2.85 |
174 | 256 | 1.586123 | GCGCTCGAAGTTCATCTCTTC | 59.414 | 52.381 | 0.00 | 0.00 | 38.22 | 2.87 |
179 | 261 | 1.281899 | GAAGTTCATCTCTTCGGCGG | 58.718 | 55.000 | 7.21 | 0.00 | 33.30 | 6.13 |
180 | 262 | 0.608640 | AAGTTCATCTCTTCGGCGGT | 59.391 | 50.000 | 7.21 | 0.00 | 0.00 | 5.68 |
181 | 263 | 0.608640 | AGTTCATCTCTTCGGCGGTT | 59.391 | 50.000 | 7.21 | 0.00 | 0.00 | 4.44 |
182 | 264 | 1.000145 | GTTCATCTCTTCGGCGGTTC | 59.000 | 55.000 | 7.21 | 0.00 | 0.00 | 3.62 |
183 | 265 | 0.457853 | TTCATCTCTTCGGCGGTTCG | 60.458 | 55.000 | 7.21 | 0.00 | 0.00 | 3.95 |
184 | 266 | 1.878522 | CATCTCTTCGGCGGTTCGG | 60.879 | 63.158 | 7.21 | 0.00 | 0.00 | 4.30 |
202 | 284 | 4.717629 | CCGACTGCGCACCGAAGA | 62.718 | 66.667 | 23.79 | 0.00 | 35.81 | 2.87 |
203 | 285 | 3.470567 | CGACTGCGCACCGAAGAC | 61.471 | 66.667 | 19.13 | 4.06 | 35.81 | 3.01 |
204 | 286 | 2.355837 | GACTGCGCACCGAAGACA | 60.356 | 61.111 | 5.66 | 0.00 | 35.81 | 3.41 |
205 | 287 | 2.356313 | ACTGCGCACCGAAGACAG | 60.356 | 61.111 | 5.66 | 0.00 | 35.81 | 3.51 |
206 | 288 | 2.049156 | CTGCGCACCGAAGACAGA | 60.049 | 61.111 | 5.66 | 0.00 | 33.75 | 3.41 |
207 | 289 | 1.446792 | CTGCGCACCGAAGACAGAT | 60.447 | 57.895 | 5.66 | 0.00 | 33.75 | 2.90 |
208 | 290 | 1.416813 | CTGCGCACCGAAGACAGATC | 61.417 | 60.000 | 5.66 | 0.00 | 33.75 | 2.75 |
232 | 314 | 2.908073 | GCCAGGCCGTGTGTTCTTG | 61.908 | 63.158 | 0.00 | 0.00 | 0.00 | 3.02 |
233 | 315 | 1.227823 | CCAGGCCGTGTGTTCTTGA | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 3.02 |
234 | 316 | 1.230635 | CCAGGCCGTGTGTTCTTGAG | 61.231 | 60.000 | 0.00 | 0.00 | 0.00 | 3.02 |
235 | 317 | 1.598130 | AGGCCGTGTGTTCTTGAGC | 60.598 | 57.895 | 0.00 | 0.00 | 0.00 | 4.26 |
236 | 318 | 2.617274 | GGCCGTGTGTTCTTGAGCC | 61.617 | 63.158 | 0.00 | 0.00 | 0.00 | 4.70 |
237 | 319 | 2.617274 | GCCGTGTGTTCTTGAGCCC | 61.617 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
238 | 320 | 1.227823 | CCGTGTGTTCTTGAGCCCA | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 5.36 |
239 | 321 | 0.817634 | CCGTGTGTTCTTGAGCCCAA | 60.818 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
240 | 322 | 1.021202 | CGTGTGTTCTTGAGCCCAAA | 58.979 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
241 | 323 | 1.002468 | CGTGTGTTCTTGAGCCCAAAG | 60.002 | 52.381 | 0.00 | 0.00 | 0.00 | 2.77 |
242 | 324 | 2.024414 | GTGTGTTCTTGAGCCCAAAGT | 58.976 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
243 | 325 | 3.211045 | GTGTGTTCTTGAGCCCAAAGTA | 58.789 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
244 | 326 | 3.003378 | GTGTGTTCTTGAGCCCAAAGTAC | 59.997 | 47.826 | 0.00 | 0.00 | 0.00 | 2.73 |
245 | 327 | 3.211045 | GTGTTCTTGAGCCCAAAGTACA | 58.789 | 45.455 | 0.00 | 0.79 | 0.00 | 2.90 |
246 | 328 | 3.821033 | GTGTTCTTGAGCCCAAAGTACAT | 59.179 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
247 | 329 | 4.072131 | TGTTCTTGAGCCCAAAGTACATC | 58.928 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
248 | 330 | 2.972625 | TCTTGAGCCCAAAGTACATCG | 58.027 | 47.619 | 0.00 | 0.00 | 0.00 | 3.84 |
249 | 331 | 2.565391 | TCTTGAGCCCAAAGTACATCGA | 59.435 | 45.455 | 0.00 | 0.00 | 0.00 | 3.59 |
250 | 332 | 3.007506 | TCTTGAGCCCAAAGTACATCGAA | 59.992 | 43.478 | 0.00 | 0.00 | 0.00 | 3.71 |
251 | 333 | 3.410631 | TGAGCCCAAAGTACATCGAAA | 57.589 | 42.857 | 0.00 | 0.00 | 0.00 | 3.46 |
252 | 334 | 3.745799 | TGAGCCCAAAGTACATCGAAAA | 58.254 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
253 | 335 | 3.500680 | TGAGCCCAAAGTACATCGAAAAC | 59.499 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
254 | 336 | 3.482436 | AGCCCAAAGTACATCGAAAACA | 58.518 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
255 | 337 | 3.502211 | AGCCCAAAGTACATCGAAAACAG | 59.498 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
256 | 338 | 3.821841 | CCCAAAGTACATCGAAAACAGC | 58.178 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
257 | 339 | 3.502211 | CCCAAAGTACATCGAAAACAGCT | 59.498 | 43.478 | 0.00 | 0.00 | 0.00 | 4.24 |
258 | 340 | 4.378459 | CCCAAAGTACATCGAAAACAGCTC | 60.378 | 45.833 | 0.00 | 0.00 | 0.00 | 4.09 |
259 | 341 | 4.452455 | CCAAAGTACATCGAAAACAGCTCT | 59.548 | 41.667 | 0.00 | 0.00 | 0.00 | 4.09 |
260 | 342 | 5.049405 | CCAAAGTACATCGAAAACAGCTCTT | 60.049 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
271 | 353 | 1.848652 | ACAGCTCTTCGGCCTAAGTA | 58.151 | 50.000 | 16.06 | 3.47 | 0.00 | 2.24 |
282 | 364 | 2.165030 | CGGCCTAAGTAAGACCGAAGAA | 59.835 | 50.000 | 0.00 | 0.00 | 46.71 | 2.52 |
283 | 365 | 3.734293 | CGGCCTAAGTAAGACCGAAGAAG | 60.734 | 52.174 | 0.00 | 0.00 | 46.71 | 2.85 |
284 | 366 | 3.430513 | GGCCTAAGTAAGACCGAAGAAGG | 60.431 | 52.174 | 0.00 | 0.00 | 37.30 | 3.46 |
285 | 367 | 3.446516 | GCCTAAGTAAGACCGAAGAAGGA | 59.553 | 47.826 | 0.00 | 0.00 | 34.73 | 3.36 |
287 | 369 | 5.301298 | GCCTAAGTAAGACCGAAGAAGGATA | 59.699 | 44.000 | 0.00 | 0.00 | 34.73 | 2.59 |
289 | 371 | 6.320672 | CCTAAGTAAGACCGAAGAAGGATACA | 59.679 | 42.308 | 0.00 | 0.00 | 41.41 | 2.29 |
291 | 373 | 7.893124 | AAGTAAGACCGAAGAAGGATACATA | 57.107 | 36.000 | 0.00 | 0.00 | 41.41 | 2.29 |
292 | 374 | 7.893124 | AGTAAGACCGAAGAAGGATACATAA | 57.107 | 36.000 | 0.00 | 0.00 | 41.41 | 1.90 |
295 | 377 | 6.642707 | AGACCGAAGAAGGATACATAAGAG | 57.357 | 41.667 | 0.00 | 0.00 | 41.41 | 2.85 |
296 | 378 | 5.536916 | AGACCGAAGAAGGATACATAAGAGG | 59.463 | 44.000 | 0.00 | 0.00 | 41.41 | 3.69 |
297 | 379 | 4.589374 | ACCGAAGAAGGATACATAAGAGGG | 59.411 | 45.833 | 0.00 | 0.00 | 41.41 | 4.30 |
298 | 380 | 4.833380 | CCGAAGAAGGATACATAAGAGGGA | 59.167 | 45.833 | 0.00 | 0.00 | 41.41 | 4.20 |
299 | 381 | 5.279056 | CCGAAGAAGGATACATAAGAGGGAC | 60.279 | 48.000 | 0.00 | 0.00 | 41.41 | 4.46 |
300 | 382 | 5.563085 | CGAAGAAGGATACATAAGAGGGACG | 60.563 | 48.000 | 0.00 | 0.00 | 41.41 | 4.79 |
301 | 383 | 4.153411 | AGAAGGATACATAAGAGGGACGG | 58.847 | 47.826 | 0.00 | 0.00 | 41.41 | 4.79 |
303 | 385 | 2.179424 | AGGATACATAAGAGGGACGGGT | 59.821 | 50.000 | 0.00 | 0.00 | 41.41 | 5.28 |
304 | 386 | 2.970640 | GGATACATAAGAGGGACGGGTT | 59.029 | 50.000 | 0.00 | 0.00 | 0.00 | 4.11 |
306 | 388 | 4.776308 | GGATACATAAGAGGGACGGGTTAT | 59.224 | 45.833 | 0.00 | 0.00 | 0.00 | 1.89 |
307 | 389 | 5.954150 | GGATACATAAGAGGGACGGGTTATA | 59.046 | 44.000 | 0.00 | 0.00 | 0.00 | 0.98 |
308 | 390 | 6.610425 | GGATACATAAGAGGGACGGGTTATAT | 59.390 | 42.308 | 0.00 | 0.00 | 0.00 | 0.86 |
309 | 391 | 7.781693 | GGATACATAAGAGGGACGGGTTATATA | 59.218 | 40.741 | 0.00 | 0.00 | 0.00 | 0.86 |
310 | 392 | 9.193806 | GATACATAAGAGGGACGGGTTATATAA | 57.806 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
344 | 430 | 4.968181 | CGAACTACGTCATACATTGTCGAT | 59.032 | 41.667 | 0.00 | 0.00 | 38.87 | 3.59 |
345 | 431 | 5.454554 | CGAACTACGTCATACATTGTCGATT | 59.545 | 40.000 | 0.00 | 0.00 | 38.87 | 3.34 |
518 | 619 | 5.577164 | GTCTAGTTGACGTTGCATGATAGTT | 59.423 | 40.000 | 0.00 | 0.00 | 35.81 | 2.24 |
525 | 626 | 5.462068 | TGACGTTGCATGATAGTTATAGCAC | 59.538 | 40.000 | 0.00 | 0.00 | 28.22 | 4.40 |
526 | 627 | 5.601662 | ACGTTGCATGATAGTTATAGCACT | 58.398 | 37.500 | 0.00 | 0.00 | 28.22 | 4.40 |
527 | 628 | 6.049149 | ACGTTGCATGATAGTTATAGCACTT | 58.951 | 36.000 | 0.00 | 0.00 | 28.22 | 3.16 |
528 | 629 | 7.207383 | ACGTTGCATGATAGTTATAGCACTTA | 58.793 | 34.615 | 0.00 | 0.00 | 28.22 | 2.24 |
859 | 1056 | 1.178276 | CTAGCTATGCTCCCTACCGG | 58.822 | 60.000 | 0.00 | 0.00 | 40.44 | 5.28 |
1387 | 1626 | 1.812571 | CTTTTAGCACCGGCAGTGATT | 59.187 | 47.619 | 4.74 | 0.00 | 44.52 | 2.57 |
1508 | 1752 | 3.027412 | GAGACAAGCATAGTGAGGGAGA | 58.973 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1553 | 1797 | 1.202604 | GGTTGTCGGTTCTCTTGTCCA | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
1587 | 1831 | 1.818674 | GGAATCGTCAAGGTGCCAAAT | 59.181 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
1733 | 1978 | 1.889829 | CACAATTTTTCCAGCCCCGTA | 59.110 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
1737 | 1982 | 2.122783 | TTTTTCCAGCCCCGTATCTG | 57.877 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1768 | 2013 | 3.491964 | CGGCGGTCCAAATACTATCTTGA | 60.492 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
1921 | 2176 | 4.112634 | TCGAGTGCTTCCAAAAGATATCG | 58.887 | 43.478 | 0.00 | 0.00 | 35.29 | 2.92 |
1924 | 2179 | 3.865745 | AGTGCTTCCAAAAGATATCGTCG | 59.134 | 43.478 | 0.00 | 0.00 | 34.14 | 5.12 |
1971 | 2267 | 5.747565 | GAATGTGTTCGATGAAGACAACAA | 58.252 | 37.500 | 12.60 | 0.00 | 46.03 | 2.83 |
1978 | 2274 | 6.258947 | TGTTCGATGAAGACAACAATGTTGTA | 59.741 | 34.615 | 28.90 | 15.67 | 41.31 | 2.41 |
1979 | 2275 | 6.223138 | TCGATGAAGACAACAATGTTGTAC | 57.777 | 37.500 | 28.90 | 21.98 | 41.31 | 2.90 |
1980 | 2276 | 5.989168 | TCGATGAAGACAACAATGTTGTACT | 59.011 | 36.000 | 28.90 | 22.86 | 41.31 | 2.73 |
1981 | 2277 | 6.481976 | TCGATGAAGACAACAATGTTGTACTT | 59.518 | 34.615 | 28.90 | 27.98 | 41.31 | 2.24 |
2000 | 2296 | 8.561738 | TGTACTTAGTTGATTTTGAAGATCCC | 57.438 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
2013 | 2309 | 1.471119 | AGATCCCAGCATTGCACTTG | 58.529 | 50.000 | 11.91 | 0.16 | 0.00 | 3.16 |
2065 | 2361 | 3.088532 | CTCGAGGCCTCATAGATTAGCT | 58.911 | 50.000 | 31.67 | 0.00 | 0.00 | 3.32 |
2088 | 2384 | 1.539827 | GCAATGTCTTTGGGCTTACGT | 59.460 | 47.619 | 0.00 | 0.00 | 35.75 | 3.57 |
2093 | 2389 | 0.680618 | TCTTTGGGCTTACGTCCGAA | 59.319 | 50.000 | 0.00 | 0.00 | 37.90 | 4.30 |
2213 | 2510 | 3.465210 | TGCCAAATCCCACCCATAATCTA | 59.535 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
2239 | 2536 | 3.263425 | GGTTCCTTCCACTCATACCAAGA | 59.737 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
2303 | 2600 | 1.285280 | CCCCAAGACCACCATACTCA | 58.715 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2424 | 2723 | 4.720649 | TTTAGAAGGAGATGAGTCCACG | 57.279 | 45.455 | 0.00 | 0.00 | 39.34 | 4.94 |
2647 | 3291 | 4.712337 | AGACAATACTACCTCTGGTCCAAG | 59.288 | 45.833 | 0.00 | 0.00 | 37.09 | 3.61 |
2797 | 3445 | 8.008513 | TGGAGAAGGAGTACTTATGTGAATAC | 57.991 | 38.462 | 0.00 | 0.00 | 40.21 | 1.89 |
2976 | 3690 | 9.677567 | GCAAGAAGACACTATTACAAATTTTCA | 57.322 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
3012 | 3726 | 6.014669 | TGTTGGGTATGATCTTTTTCCCTTTG | 60.015 | 38.462 | 13.33 | 0.00 | 36.23 | 2.77 |
3031 | 3748 | 3.708403 | TGCACCTGATTGAGAGTCATT | 57.292 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
3035 | 3752 | 4.008330 | CACCTGATTGAGAGTCATTTGCT | 58.992 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
3080 | 3802 | 4.703093 | TGCTACCTTACCAAAATGGCTTAC | 59.297 | 41.667 | 0.00 | 0.00 | 42.67 | 2.34 |
3081 | 3803 | 4.948004 | GCTACCTTACCAAAATGGCTTACT | 59.052 | 41.667 | 0.00 | 0.00 | 42.67 | 2.24 |
3082 | 3804 | 6.117488 | GCTACCTTACCAAAATGGCTTACTA | 58.883 | 40.000 | 0.00 | 0.00 | 42.67 | 1.82 |
3084 | 3806 | 7.121611 | GCTACCTTACCAAAATGGCTTACTAAA | 59.878 | 37.037 | 0.00 | 0.00 | 42.67 | 1.85 |
3149 | 4922 | 5.994668 | GCAAAACATTTTCCTCCAACCATTA | 59.005 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
3309 | 5088 | 8.877195 | AGTTATAAAAACCAAGTACTCTCTCCA | 58.123 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
3313 | 5092 | 5.825593 | AAACCAAGTACTCTCTCCAATCA | 57.174 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
3616 | 6821 | 5.049060 | TGTTGTGTGTAAGCAATACCATCAC | 60.049 | 40.000 | 0.00 | 0.58 | 33.27 | 3.06 |
3633 | 6838 | 6.237901 | ACCATCACAAGCTAACTGACAATAA | 58.762 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3765 | 6974 | 1.598130 | GCTGAACAACACGCTCCCT | 60.598 | 57.895 | 0.00 | 0.00 | 0.00 | 4.20 |
3885 | 7094 | 4.263243 | GGCTCCATGCTAATGACCTTCTAT | 60.263 | 45.833 | 0.00 | 0.00 | 42.39 | 1.98 |
3912 | 7121 | 1.381872 | CCTCGTCAGGACCCTGGAT | 60.382 | 63.158 | 15.43 | 0.00 | 43.65 | 3.41 |
3960 | 7169 | 4.457496 | ACCATGACTGCCGAGGCG | 62.457 | 66.667 | 9.78 | 6.99 | 45.51 | 5.52 |
4005 | 7214 | 2.124403 | GTCCTCGGGGCGACTCTA | 60.124 | 66.667 | 0.00 | 0.00 | 0.00 | 2.43 |
4055 | 7264 | 7.217200 | GCAGTCTGGTTCATTATTCAGGTATA | 58.783 | 38.462 | 1.14 | 0.00 | 0.00 | 1.47 |
4669 | 8555 | 8.079203 | CGGATACTGATTGCTCATATATACTCC | 58.921 | 40.741 | 0.00 | 0.00 | 0.00 | 3.85 |
4813 | 10757 | 1.275291 | ACGAGGAGAAGAAAATCGGCA | 59.725 | 47.619 | 0.00 | 0.00 | 37.69 | 5.69 |
4867 | 10814 | 2.741985 | CGGTCTTGCGGTCATGCA | 60.742 | 61.111 | 0.00 | 0.00 | 44.61 | 3.96 |
4868 | 10815 | 2.108514 | CGGTCTTGCGGTCATGCAT | 61.109 | 57.895 | 0.00 | 0.00 | 45.78 | 3.96 |
4926 | 10886 | 1.970114 | GCAGTGCAGTGTCATGGCT | 60.970 | 57.895 | 22.22 | 0.00 | 0.00 | 4.75 |
4938 | 10898 | 3.441572 | GTGTCATGGCTTGAGTTTATGCT | 59.558 | 43.478 | 2.94 | 0.00 | 34.17 | 3.79 |
4948 | 10908 | 6.051717 | GCTTGAGTTTATGCTATCTTGGAGA | 58.948 | 40.000 | 0.00 | 0.00 | 0.00 | 3.71 |
5011 | 10973 | 6.332735 | AGGTGAATAAGACAAAAAGAAGGC | 57.667 | 37.500 | 0.00 | 0.00 | 0.00 | 4.35 |
5083 | 11045 | 9.815936 | ACAAGAAATAAAACGGAAATACTAACG | 57.184 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
5084 | 11046 | 8.782327 | CAAGAAATAAAACGGAAATACTAACGC | 58.218 | 33.333 | 0.00 | 0.00 | 0.00 | 4.84 |
5085 | 11047 | 7.466805 | AGAAATAAAACGGAAATACTAACGCC | 58.533 | 34.615 | 0.00 | 0.00 | 0.00 | 5.68 |
5086 | 11048 | 5.739752 | ATAAAACGGAAATACTAACGCCC | 57.260 | 39.130 | 0.00 | 0.00 | 0.00 | 6.13 |
5087 | 11049 | 2.766345 | AACGGAAATACTAACGCCCA | 57.234 | 45.000 | 0.00 | 0.00 | 0.00 | 5.36 |
5088 | 11050 | 2.014335 | ACGGAAATACTAACGCCCAC | 57.986 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
5089 | 11051 | 1.275856 | ACGGAAATACTAACGCCCACA | 59.724 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
5090 | 11052 | 1.662122 | CGGAAATACTAACGCCCACAC | 59.338 | 52.381 | 0.00 | 0.00 | 0.00 | 3.82 |
5091 | 11053 | 1.662122 | GGAAATACTAACGCCCACACG | 59.338 | 52.381 | 0.00 | 0.00 | 39.50 | 4.49 |
5102 | 11064 | 3.481661 | CCACACGTATGGGCGTTC | 58.518 | 61.111 | 4.49 | 0.00 | 43.83 | 3.95 |
5103 | 11065 | 2.104253 | CCACACGTATGGGCGTTCC | 61.104 | 63.158 | 4.49 | 0.00 | 43.83 | 3.62 |
5118 | 11080 | 2.534396 | TTCCCCAACTCGCCCACAT | 61.534 | 57.895 | 0.00 | 0.00 | 0.00 | 3.21 |
5131 | 11093 | 4.063529 | CACATGTGTGGGCGTTCT | 57.936 | 55.556 | 18.03 | 0.00 | 42.10 | 3.01 |
5158 | 11120 | 1.292223 | CCCACACGTCTGGATCGTT | 59.708 | 57.895 | 11.92 | 0.00 | 39.55 | 3.85 |
5173 | 11135 | 5.361427 | TGGATCGTTGTTCACTGTCTTTTA | 58.639 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
5174 | 11136 | 5.995282 | TGGATCGTTGTTCACTGTCTTTTAT | 59.005 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
5209 | 11171 | 3.888930 | ACGAAAAGGTGGATTTGATGTGT | 59.111 | 39.130 | 0.00 | 0.00 | 0.00 | 3.72 |
5217 | 11179 | 4.242475 | GTGGATTTGATGTGTCACGTAGA | 58.758 | 43.478 | 0.00 | 0.00 | 33.11 | 2.59 |
5250 | 11212 | 1.021968 | GTGGGCGTTGAAGAGTTTGT | 58.978 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
5256 | 11218 | 2.290641 | GCGTTGAAGAGTTTGTCCACAT | 59.709 | 45.455 | 0.00 | 0.00 | 0.00 | 3.21 |
5307 | 11269 | 4.558095 | GCTGTGTGGACGAACTAGTTTCTA | 60.558 | 45.833 | 10.02 | 0.00 | 31.20 | 2.10 |
5308 | 11270 | 5.117355 | TGTGTGGACGAACTAGTTTCTAG | 57.883 | 43.478 | 10.02 | 4.86 | 31.20 | 2.43 |
5328 | 11290 | 1.480212 | CCACACAGCCACCACCTAGA | 61.480 | 60.000 | 0.00 | 0.00 | 0.00 | 2.43 |
5473 | 11438 | 3.244105 | AACTGCAGTTGCGCGTAG | 58.756 | 55.556 | 30.66 | 0.00 | 45.83 | 3.51 |
5503 | 11468 | 3.367292 | CCAGATAAACACACATGGCAACC | 60.367 | 47.826 | 0.00 | 0.00 | 0.00 | 3.77 |
5536 | 11501 | 6.779049 | ACAATACATGGCAACTATGATTGGAT | 59.221 | 34.615 | 0.00 | 0.00 | 33.53 | 3.41 |
5542 | 11507 | 3.947196 | GGCAACTATGATTGGATCACACA | 59.053 | 43.478 | 0.00 | 0.00 | 43.01 | 3.72 |
5553 | 11518 | 2.571202 | TGGATCACACATGGCAACTAGA | 59.429 | 45.455 | 0.00 | 0.00 | 37.61 | 2.43 |
5587 | 11552 | 8.482943 | ACATGGCAACTACTGTTTGACTATATA | 58.517 | 33.333 | 0.00 | 0.00 | 33.52 | 0.86 |
5633 | 11598 | 3.184986 | GCAACTACGGTTTGATTACACGT | 59.815 | 43.478 | 0.00 | 0.00 | 41.10 | 4.49 |
5645 | 11610 | 4.946445 | TGATTACACGTGACAACTACCAA | 58.054 | 39.130 | 25.01 | 2.11 | 0.00 | 3.67 |
5719 | 11685 | 4.634012 | TTACAACTACACTTGCCATCCT | 57.366 | 40.909 | 0.00 | 0.00 | 0.00 | 3.24 |
5792 | 11758 | 0.599558 | ACCTAACGTAGCTGCGTCAA | 59.400 | 50.000 | 29.76 | 19.27 | 45.00 | 3.18 |
5800 | 11766 | 2.731027 | CGTAGCTGCGTCAAGACATGTA | 60.731 | 50.000 | 16.66 | 0.00 | 0.00 | 2.29 |
5855 | 11821 | 7.789831 | AGGTGGAGATGAGTAGTATTTATTGGA | 59.210 | 37.037 | 0.00 | 0.00 | 0.00 | 3.53 |
5921 | 11887 | 4.275508 | CTGCCCACACACAGCCCT | 62.276 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
5922 | 11888 | 2.851588 | TGCCCACACACAGCCCTA | 60.852 | 61.111 | 0.00 | 0.00 | 0.00 | 3.53 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
4 | 5 | 2.159448 | TGCCAATTATACGTGCAAGTGC | 60.159 | 45.455 | 15.96 | 8.65 | 42.50 | 4.40 |
5 | 6 | 3.755965 | TGCCAATTATACGTGCAAGTG | 57.244 | 42.857 | 15.96 | 1.12 | 0.00 | 3.16 |
6 | 7 | 4.775058 | TTTGCCAATTATACGTGCAAGT | 57.225 | 36.364 | 10.83 | 10.83 | 42.25 | 3.16 |
7 | 8 | 4.920340 | TGTTTTGCCAATTATACGTGCAAG | 59.080 | 37.500 | 0.00 | 0.00 | 42.25 | 4.01 |
8 | 9 | 4.871513 | TGTTTTGCCAATTATACGTGCAA | 58.128 | 34.783 | 0.00 | 0.00 | 39.92 | 4.08 |
9 | 10 | 4.505313 | TGTTTTGCCAATTATACGTGCA | 57.495 | 36.364 | 0.00 | 0.00 | 0.00 | 4.57 |
10 | 11 | 5.005299 | GGATTGTTTTGCCAATTATACGTGC | 59.995 | 40.000 | 0.00 | 0.00 | 35.24 | 5.34 |
11 | 12 | 6.253298 | CAGGATTGTTTTGCCAATTATACGTG | 59.747 | 38.462 | 0.00 | 0.00 | 35.24 | 4.49 |
12 | 13 | 6.329496 | CAGGATTGTTTTGCCAATTATACGT | 58.671 | 36.000 | 0.00 | 0.00 | 35.24 | 3.57 |
13 | 14 | 5.231991 | GCAGGATTGTTTTGCCAATTATACG | 59.768 | 40.000 | 0.00 | 0.00 | 35.24 | 3.06 |
14 | 15 | 6.035975 | GTGCAGGATTGTTTTGCCAATTATAC | 59.964 | 38.462 | 0.00 | 0.00 | 35.24 | 1.47 |
15 | 16 | 6.105333 | GTGCAGGATTGTTTTGCCAATTATA | 58.895 | 36.000 | 0.00 | 0.00 | 35.24 | 0.98 |
16 | 17 | 4.937015 | GTGCAGGATTGTTTTGCCAATTAT | 59.063 | 37.500 | 0.00 | 0.00 | 35.24 | 1.28 |
17 | 18 | 4.314121 | GTGCAGGATTGTTTTGCCAATTA | 58.686 | 39.130 | 0.00 | 0.00 | 35.24 | 1.40 |
18 | 19 | 3.140623 | GTGCAGGATTGTTTTGCCAATT | 58.859 | 40.909 | 0.00 | 0.00 | 35.24 | 2.32 |
19 | 20 | 2.550639 | GGTGCAGGATTGTTTTGCCAAT | 60.551 | 45.455 | 0.00 | 0.00 | 37.74 | 3.16 |
20 | 21 | 1.202627 | GGTGCAGGATTGTTTTGCCAA | 60.203 | 47.619 | 0.00 | 0.00 | 37.03 | 4.52 |
21 | 22 | 0.392336 | GGTGCAGGATTGTTTTGCCA | 59.608 | 50.000 | 0.00 | 0.00 | 37.03 | 4.92 |
22 | 23 | 0.392336 | TGGTGCAGGATTGTTTTGCC | 59.608 | 50.000 | 0.00 | 0.00 | 37.03 | 4.52 |
23 | 24 | 1.069049 | ACTGGTGCAGGATTGTTTTGC | 59.931 | 47.619 | 0.00 | 0.00 | 35.51 | 3.68 |
24 | 25 | 3.068590 | AGAACTGGTGCAGGATTGTTTTG | 59.931 | 43.478 | 0.00 | 0.00 | 35.51 | 2.44 |
25 | 26 | 3.299503 | AGAACTGGTGCAGGATTGTTTT | 58.700 | 40.909 | 0.00 | 0.00 | 35.51 | 2.43 |
26 | 27 | 2.949447 | AGAACTGGTGCAGGATTGTTT | 58.051 | 42.857 | 0.00 | 0.00 | 35.51 | 2.83 |
27 | 28 | 2.664402 | AGAACTGGTGCAGGATTGTT | 57.336 | 45.000 | 0.00 | 0.00 | 35.51 | 2.83 |
28 | 29 | 2.639839 | ACTAGAACTGGTGCAGGATTGT | 59.360 | 45.455 | 0.00 | 0.00 | 35.51 | 2.71 |
29 | 30 | 3.340814 | ACTAGAACTGGTGCAGGATTG | 57.659 | 47.619 | 0.00 | 0.00 | 35.51 | 2.67 |
30 | 31 | 6.742644 | GCATATACTAGAACTGGTGCAGGATT | 60.743 | 42.308 | 0.00 | 0.00 | 35.51 | 3.01 |
31 | 32 | 5.279708 | GCATATACTAGAACTGGTGCAGGAT | 60.280 | 44.000 | 0.00 | 0.00 | 35.51 | 3.24 |
32 | 33 | 4.039245 | GCATATACTAGAACTGGTGCAGGA | 59.961 | 45.833 | 0.00 | 0.00 | 35.51 | 3.86 |
33 | 34 | 4.310769 | GCATATACTAGAACTGGTGCAGG | 58.689 | 47.826 | 0.00 | 0.00 | 35.51 | 4.85 |
34 | 35 | 3.983988 | CGCATATACTAGAACTGGTGCAG | 59.016 | 47.826 | 0.00 | 0.00 | 37.52 | 4.41 |
35 | 36 | 3.383505 | ACGCATATACTAGAACTGGTGCA | 59.616 | 43.478 | 0.00 | 0.00 | 0.00 | 4.57 |
36 | 37 | 3.978687 | ACGCATATACTAGAACTGGTGC | 58.021 | 45.455 | 0.00 | 0.00 | 0.00 | 5.01 |
37 | 38 | 6.555812 | TCTACGCATATACTAGAACTGGTG | 57.444 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
38 | 39 | 8.102047 | ACTATCTACGCATATACTAGAACTGGT | 58.898 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
39 | 40 | 8.495361 | ACTATCTACGCATATACTAGAACTGG | 57.505 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
44 | 45 | 9.043079 | GCATGTACTATCTACGCATATACTAGA | 57.957 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
45 | 46 | 8.827677 | TGCATGTACTATCTACGCATATACTAG | 58.172 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
46 | 47 | 8.610035 | GTGCATGTACTATCTACGCATATACTA | 58.390 | 37.037 | 6.69 | 0.00 | 0.00 | 1.82 |
47 | 48 | 7.120726 | TGTGCATGTACTATCTACGCATATACT | 59.879 | 37.037 | 15.25 | 0.00 | 0.00 | 2.12 |
48 | 49 | 7.248437 | TGTGCATGTACTATCTACGCATATAC | 58.752 | 38.462 | 15.25 | 0.00 | 0.00 | 1.47 |
49 | 50 | 7.385778 | TGTGCATGTACTATCTACGCATATA | 57.614 | 36.000 | 15.25 | 0.00 | 0.00 | 0.86 |
50 | 51 | 6.267496 | TGTGCATGTACTATCTACGCATAT | 57.733 | 37.500 | 15.25 | 0.00 | 0.00 | 1.78 |
51 | 52 | 5.699097 | TGTGCATGTACTATCTACGCATA | 57.301 | 39.130 | 15.25 | 0.00 | 0.00 | 3.14 |
52 | 53 | 4.584327 | TGTGCATGTACTATCTACGCAT | 57.416 | 40.909 | 15.25 | 0.00 | 0.00 | 4.73 |
53 | 54 | 4.298332 | CATGTGCATGTACTATCTACGCA | 58.702 | 43.478 | 15.25 | 0.00 | 34.23 | 5.24 |
54 | 55 | 3.121944 | GCATGTGCATGTACTATCTACGC | 59.878 | 47.826 | 15.25 | 3.80 | 40.80 | 4.42 |
55 | 56 | 4.893036 | GCATGTGCATGTACTATCTACG | 57.107 | 45.455 | 15.25 | 0.00 | 40.80 | 3.51 |
69 | 70 | 3.555547 | TGACAATCTACGTATGCATGTGC | 59.444 | 43.478 | 10.16 | 0.00 | 42.50 | 4.57 |
70 | 71 | 5.717038 | TTGACAATCTACGTATGCATGTG | 57.283 | 39.130 | 10.16 | 3.78 | 0.00 | 3.21 |
71 | 72 | 6.017934 | GGAATTGACAATCTACGTATGCATGT | 60.018 | 38.462 | 10.16 | 1.67 | 0.00 | 3.21 |
72 | 73 | 6.018016 | TGGAATTGACAATCTACGTATGCATG | 60.018 | 38.462 | 10.16 | 0.00 | 0.00 | 4.06 |
73 | 74 | 6.054941 | TGGAATTGACAATCTACGTATGCAT | 58.945 | 36.000 | 3.79 | 3.79 | 0.00 | 3.96 |
74 | 75 | 5.423886 | TGGAATTGACAATCTACGTATGCA | 58.576 | 37.500 | 0.05 | 0.00 | 0.00 | 3.96 |
75 | 76 | 5.984233 | TGGAATTGACAATCTACGTATGC | 57.016 | 39.130 | 0.05 | 0.00 | 0.00 | 3.14 |
76 | 77 | 6.640907 | TCGATGGAATTGACAATCTACGTATG | 59.359 | 38.462 | 0.05 | 0.00 | 29.84 | 2.39 |
77 | 78 | 6.745116 | TCGATGGAATTGACAATCTACGTAT | 58.255 | 36.000 | 0.05 | 0.00 | 29.84 | 3.06 |
78 | 79 | 6.139048 | TCGATGGAATTGACAATCTACGTA | 57.861 | 37.500 | 0.05 | 0.00 | 29.84 | 3.57 |
79 | 80 | 5.006153 | TCGATGGAATTGACAATCTACGT | 57.994 | 39.130 | 0.05 | 0.00 | 29.84 | 3.57 |
80 | 81 | 5.043903 | ACTCGATGGAATTGACAATCTACG | 58.956 | 41.667 | 0.05 | 4.43 | 32.08 | 3.51 |
81 | 82 | 6.042777 | TGACTCGATGGAATTGACAATCTAC | 58.957 | 40.000 | 0.05 | 0.00 | 32.08 | 2.59 |
82 | 83 | 6.220726 | TGACTCGATGGAATTGACAATCTA | 57.779 | 37.500 | 0.05 | 0.00 | 32.08 | 1.98 |
83 | 84 | 5.089970 | TGACTCGATGGAATTGACAATCT | 57.910 | 39.130 | 0.05 | 0.00 | 32.08 | 2.40 |
84 | 85 | 5.998454 | ATGACTCGATGGAATTGACAATC | 57.002 | 39.130 | 0.05 | 0.00 | 32.08 | 2.67 |
85 | 86 | 5.649395 | ACAATGACTCGATGGAATTGACAAT | 59.351 | 36.000 | 13.81 | 0.00 | 32.08 | 2.71 |
86 | 87 | 5.003160 | ACAATGACTCGATGGAATTGACAA | 58.997 | 37.500 | 13.81 | 0.00 | 32.08 | 3.18 |
87 | 88 | 4.578871 | ACAATGACTCGATGGAATTGACA | 58.421 | 39.130 | 13.81 | 0.00 | 32.08 | 3.58 |
88 | 89 | 4.034510 | GGACAATGACTCGATGGAATTGAC | 59.965 | 45.833 | 13.81 | 9.31 | 32.08 | 3.18 |
89 | 90 | 4.191544 | GGACAATGACTCGATGGAATTGA | 58.808 | 43.478 | 13.81 | 0.00 | 34.92 | 2.57 |
90 | 91 | 3.940852 | TGGACAATGACTCGATGGAATTG | 59.059 | 43.478 | 8.06 | 8.06 | 34.99 | 2.32 |
91 | 92 | 4.194640 | CTGGACAATGACTCGATGGAATT | 58.805 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
92 | 93 | 3.432749 | CCTGGACAATGACTCGATGGAAT | 60.433 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
93 | 94 | 2.093500 | CCTGGACAATGACTCGATGGAA | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
94 | 95 | 1.482182 | CCTGGACAATGACTCGATGGA | 59.518 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
95 | 96 | 1.482182 | TCCTGGACAATGACTCGATGG | 59.518 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
96 | 97 | 2.932614 | GTTCCTGGACAATGACTCGATG | 59.067 | 50.000 | 0.00 | 0.00 | 0.00 | 3.84 |
97 | 98 | 2.567169 | TGTTCCTGGACAATGACTCGAT | 59.433 | 45.455 | 0.00 | 0.00 | 0.00 | 3.59 |
98 | 99 | 1.967779 | TGTTCCTGGACAATGACTCGA | 59.032 | 47.619 | 0.00 | 0.00 | 0.00 | 4.04 |
99 | 100 | 2.455674 | TGTTCCTGGACAATGACTCG | 57.544 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
100 | 101 | 3.503748 | CCTTTGTTCCTGGACAATGACTC | 59.496 | 47.826 | 17.96 | 0.00 | 39.12 | 3.36 |
101 | 102 | 3.490348 | CCTTTGTTCCTGGACAATGACT | 58.510 | 45.455 | 17.96 | 0.00 | 39.12 | 3.41 |
102 | 103 | 2.029918 | GCCTTTGTTCCTGGACAATGAC | 60.030 | 50.000 | 17.96 | 7.26 | 39.12 | 3.06 |
103 | 104 | 2.158475 | AGCCTTTGTTCCTGGACAATGA | 60.158 | 45.455 | 17.96 | 5.49 | 39.12 | 2.57 |
104 | 105 | 2.029649 | CAGCCTTTGTTCCTGGACAATG | 60.030 | 50.000 | 0.00 | 6.86 | 39.12 | 2.82 |
105 | 106 | 2.242043 | CAGCCTTTGTTCCTGGACAAT | 58.758 | 47.619 | 0.00 | 0.00 | 39.12 | 2.71 |
106 | 107 | 1.064017 | ACAGCCTTTGTTCCTGGACAA | 60.064 | 47.619 | 0.00 | 1.65 | 36.31 | 3.18 |
107 | 108 | 0.550914 | ACAGCCTTTGTTCCTGGACA | 59.449 | 50.000 | 0.00 | 0.00 | 36.31 | 4.02 |
108 | 109 | 3.421567 | ACAGCCTTTGTTCCTGGAC | 57.578 | 52.632 | 0.00 | 0.00 | 36.31 | 4.02 |
164 | 246 | 0.457853 | CGAACCGCCGAAGAGATGAA | 60.458 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
165 | 247 | 1.138883 | CGAACCGCCGAAGAGATGA | 59.861 | 57.895 | 0.00 | 0.00 | 0.00 | 2.92 |
166 | 248 | 1.878522 | CCGAACCGCCGAAGAGATG | 60.879 | 63.158 | 0.00 | 0.00 | 0.00 | 2.90 |
167 | 249 | 2.494918 | CCGAACCGCCGAAGAGAT | 59.505 | 61.111 | 0.00 | 0.00 | 0.00 | 2.75 |
168 | 250 | 4.430765 | GCCGAACCGCCGAAGAGA | 62.431 | 66.667 | 0.00 | 0.00 | 0.00 | 3.10 |
185 | 267 | 4.717629 | TCTTCGGTGCGCAGTCGG | 62.718 | 66.667 | 25.86 | 14.40 | 35.95 | 4.79 |
186 | 268 | 3.470567 | GTCTTCGGTGCGCAGTCG | 61.471 | 66.667 | 22.24 | 22.24 | 39.07 | 4.18 |
187 | 269 | 2.355837 | TGTCTTCGGTGCGCAGTC | 60.356 | 61.111 | 12.22 | 5.29 | 0.00 | 3.51 |
188 | 270 | 2.159819 | ATCTGTCTTCGGTGCGCAGT | 62.160 | 55.000 | 12.22 | 0.00 | 0.00 | 4.40 |
189 | 271 | 1.416813 | GATCTGTCTTCGGTGCGCAG | 61.417 | 60.000 | 12.22 | 0.00 | 0.00 | 5.18 |
190 | 272 | 1.446099 | GATCTGTCTTCGGTGCGCA | 60.446 | 57.895 | 5.66 | 5.66 | 0.00 | 6.09 |
191 | 273 | 0.737715 | AAGATCTGTCTTCGGTGCGC | 60.738 | 55.000 | 0.00 | 0.00 | 40.68 | 6.09 |
192 | 274 | 3.425578 | AAGATCTGTCTTCGGTGCG | 57.574 | 52.632 | 0.00 | 0.00 | 40.68 | 5.34 |
200 | 282 | 1.333636 | CCTGGCCCGAAGATCTGTCT | 61.334 | 60.000 | 0.00 | 0.00 | 35.82 | 3.41 |
201 | 283 | 1.144936 | CCTGGCCCGAAGATCTGTC | 59.855 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
202 | 284 | 3.036429 | GCCTGGCCCGAAGATCTGT | 62.036 | 63.158 | 7.66 | 0.00 | 0.00 | 3.41 |
203 | 285 | 2.203126 | GCCTGGCCCGAAGATCTG | 60.203 | 66.667 | 7.66 | 0.00 | 0.00 | 2.90 |
204 | 286 | 3.483869 | GGCCTGGCCCGAAGATCT | 61.484 | 66.667 | 27.77 | 0.00 | 44.06 | 2.75 |
232 | 314 | 3.500680 | TGTTTTCGATGTACTTTGGGCTC | 59.499 | 43.478 | 0.00 | 0.00 | 0.00 | 4.70 |
233 | 315 | 3.482436 | TGTTTTCGATGTACTTTGGGCT | 58.518 | 40.909 | 0.00 | 0.00 | 0.00 | 5.19 |
234 | 316 | 3.821841 | CTGTTTTCGATGTACTTTGGGC | 58.178 | 45.455 | 0.00 | 0.00 | 0.00 | 5.36 |
235 | 317 | 3.502211 | AGCTGTTTTCGATGTACTTTGGG | 59.498 | 43.478 | 0.00 | 0.00 | 0.00 | 4.12 |
236 | 318 | 4.452455 | AGAGCTGTTTTCGATGTACTTTGG | 59.548 | 41.667 | 0.00 | 0.00 | 0.00 | 3.28 |
237 | 319 | 5.597813 | AGAGCTGTTTTCGATGTACTTTG | 57.402 | 39.130 | 0.00 | 0.00 | 0.00 | 2.77 |
238 | 320 | 5.107453 | CGAAGAGCTGTTTTCGATGTACTTT | 60.107 | 40.000 | 15.68 | 0.00 | 46.67 | 2.66 |
239 | 321 | 4.386049 | CGAAGAGCTGTTTTCGATGTACTT | 59.614 | 41.667 | 15.68 | 0.00 | 46.67 | 2.24 |
240 | 322 | 3.921021 | CGAAGAGCTGTTTTCGATGTACT | 59.079 | 43.478 | 15.68 | 0.00 | 46.67 | 2.73 |
241 | 323 | 3.060895 | CCGAAGAGCTGTTTTCGATGTAC | 59.939 | 47.826 | 20.13 | 0.00 | 46.67 | 2.90 |
242 | 324 | 3.250744 | CCGAAGAGCTGTTTTCGATGTA | 58.749 | 45.455 | 20.13 | 0.00 | 46.67 | 2.29 |
243 | 325 | 2.069273 | CCGAAGAGCTGTTTTCGATGT | 58.931 | 47.619 | 20.13 | 0.00 | 46.67 | 3.06 |
244 | 326 | 1.201965 | GCCGAAGAGCTGTTTTCGATG | 60.202 | 52.381 | 20.13 | 9.81 | 46.67 | 3.84 |
245 | 327 | 1.079503 | GCCGAAGAGCTGTTTTCGAT | 58.920 | 50.000 | 20.13 | 0.00 | 46.67 | 3.59 |
246 | 328 | 0.949105 | GGCCGAAGAGCTGTTTTCGA | 60.949 | 55.000 | 20.13 | 0.00 | 46.67 | 3.71 |
247 | 329 | 0.951040 | AGGCCGAAGAGCTGTTTTCG | 60.951 | 55.000 | 14.40 | 14.40 | 44.17 | 3.46 |
248 | 330 | 2.094762 | TAGGCCGAAGAGCTGTTTTC | 57.905 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
249 | 331 | 2.224548 | ACTTAGGCCGAAGAGCTGTTTT | 60.225 | 45.455 | 29.73 | 4.03 | 0.00 | 2.43 |
250 | 332 | 1.348036 | ACTTAGGCCGAAGAGCTGTTT | 59.652 | 47.619 | 29.73 | 4.77 | 0.00 | 2.83 |
251 | 333 | 0.977395 | ACTTAGGCCGAAGAGCTGTT | 59.023 | 50.000 | 29.73 | 5.50 | 0.00 | 3.16 |
252 | 334 | 1.848652 | TACTTAGGCCGAAGAGCTGT | 58.151 | 50.000 | 29.73 | 12.01 | 0.00 | 4.40 |
253 | 335 | 2.427453 | TCTTACTTAGGCCGAAGAGCTG | 59.573 | 50.000 | 29.73 | 16.36 | 0.00 | 4.24 |
254 | 336 | 2.427812 | GTCTTACTTAGGCCGAAGAGCT | 59.572 | 50.000 | 29.73 | 11.95 | 0.00 | 4.09 |
255 | 337 | 2.481622 | GGTCTTACTTAGGCCGAAGAGC | 60.482 | 54.545 | 29.73 | 21.49 | 39.27 | 4.09 |
256 | 338 | 3.439895 | GGTCTTACTTAGGCCGAAGAG | 57.560 | 52.381 | 29.73 | 18.14 | 39.27 | 2.85 |
271 | 353 | 6.041069 | CCTCTTATGTATCCTTCTTCGGTCTT | 59.959 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
279 | 361 | 4.153411 | CCGTCCCTCTTATGTATCCTTCT | 58.847 | 47.826 | 0.00 | 0.00 | 0.00 | 2.85 |
282 | 364 | 2.179424 | ACCCGTCCCTCTTATGTATCCT | 59.821 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
283 | 365 | 2.606378 | ACCCGTCCCTCTTATGTATCC | 58.394 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
284 | 366 | 5.997384 | ATAACCCGTCCCTCTTATGTATC | 57.003 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
285 | 367 | 9.725206 | ATTATATAACCCGTCCCTCTTATGTAT | 57.275 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
287 | 369 | 8.319146 | CAATTATATAACCCGTCCCTCTTATGT | 58.681 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
289 | 371 | 8.445361 | ACAATTATATAACCCGTCCCTCTTAT | 57.555 | 34.615 | 0.00 | 0.00 | 0.00 | 1.73 |
291 | 373 | 6.758806 | ACAATTATATAACCCGTCCCTCTT | 57.241 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
292 | 374 | 7.860649 | TTACAATTATATAACCCGTCCCTCT | 57.139 | 36.000 | 0.00 | 0.00 | 0.00 | 3.69 |
433 | 526 | 9.125026 | AGTTTATTTAGAGATTTCAATGCCGAT | 57.875 | 29.630 | 0.00 | 0.00 | 0.00 | 4.18 |
464 | 557 | 5.472820 | ACGATATACTCCCTCCGTTTCTAAG | 59.527 | 44.000 | 0.00 | 0.00 | 0.00 | 2.18 |
505 | 606 | 7.171508 | TGCTAAGTGCTATAACTATCATGCAAC | 59.828 | 37.037 | 0.00 | 0.00 | 43.37 | 4.17 |
518 | 619 | 4.649218 | TGTGTCATCCTGCTAAGTGCTATA | 59.351 | 41.667 | 0.00 | 0.00 | 43.37 | 1.31 |
525 | 626 | 2.548875 | GAGCTGTGTCATCCTGCTAAG | 58.451 | 52.381 | 0.00 | 0.00 | 37.26 | 2.18 |
526 | 627 | 1.134995 | CGAGCTGTGTCATCCTGCTAA | 60.135 | 52.381 | 0.00 | 0.00 | 37.26 | 3.09 |
527 | 628 | 0.457443 | CGAGCTGTGTCATCCTGCTA | 59.543 | 55.000 | 0.00 | 0.00 | 37.26 | 3.49 |
528 | 629 | 1.217511 | CGAGCTGTGTCATCCTGCT | 59.782 | 57.895 | 0.00 | 0.00 | 39.44 | 4.24 |
859 | 1056 | 5.520288 | CGTGTAATGTGGCATATATAGAGGC | 59.480 | 44.000 | 0.00 | 0.00 | 0.00 | 4.70 |
1245 | 1484 | 2.476241 | GCAAATCTTTTGCCTCCGTTTG | 59.524 | 45.455 | 12.74 | 0.00 | 39.38 | 2.93 |
1272 | 1511 | 9.825109 | AAACTCTGCTCCTCTCTTATTTAATAC | 57.175 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
1508 | 1752 | 1.069765 | CCAACCGGAGCGCTATGAT | 59.930 | 57.895 | 11.50 | 0.00 | 0.00 | 2.45 |
1553 | 1797 | 1.078708 | ATTCCGTCCGCGAATGGTT | 60.079 | 52.632 | 8.23 | 0.00 | 41.33 | 3.67 |
1587 | 1831 | 1.073025 | GCTCACATGGACACCACCA | 59.927 | 57.895 | 0.00 | 0.00 | 44.41 | 4.17 |
1646 | 1890 | 3.407698 | TCTTCTTCAAATGCCGCTACAA | 58.592 | 40.909 | 0.00 | 0.00 | 0.00 | 2.41 |
1733 | 1978 | 2.963854 | CGCCGATCGCTTGCAGAT | 60.964 | 61.111 | 10.32 | 0.00 | 34.21 | 2.90 |
1790 | 2035 | 2.035783 | GGCTCCCCCAAGGTCAAC | 59.964 | 66.667 | 0.00 | 0.00 | 36.75 | 3.18 |
1835 | 2090 | 0.991920 | CTGGGGCTAACTCTTTCCCA | 59.008 | 55.000 | 0.00 | 0.00 | 44.59 | 4.37 |
1882 | 2137 | 3.056393 | ACTCGAATGACGGGATTTACACA | 60.056 | 43.478 | 0.00 | 0.00 | 46.62 | 3.72 |
1921 | 2176 | 3.878086 | TTTGATGAACAGCTTGACGAC | 57.122 | 42.857 | 0.00 | 0.00 | 0.00 | 4.34 |
1924 | 2179 | 5.566774 | CGAGAATTTTGATGAACAGCTTGAC | 59.433 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1959 | 2255 | 8.677148 | ACTAAGTACAACATTGTTGTCTTCAT | 57.323 | 30.769 | 32.35 | 21.82 | 42.35 | 2.57 |
1960 | 2256 | 8.394877 | CAACTAAGTACAACATTGTTGTCTTCA | 58.605 | 33.333 | 32.35 | 16.58 | 42.35 | 3.02 |
1962 | 2258 | 8.500753 | TCAACTAAGTACAACATTGTTGTCTT | 57.499 | 30.769 | 32.35 | 30.33 | 42.35 | 3.01 |
1978 | 2274 | 6.151817 | GCTGGGATCTTCAAAATCAACTAAGT | 59.848 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
1979 | 2275 | 6.151648 | TGCTGGGATCTTCAAAATCAACTAAG | 59.848 | 38.462 | 0.00 | 0.00 | 0.00 | 2.18 |
1980 | 2276 | 6.009589 | TGCTGGGATCTTCAAAATCAACTAA | 58.990 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1981 | 2277 | 5.569355 | TGCTGGGATCTTCAAAATCAACTA | 58.431 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
2000 | 2296 | 0.170561 | GGCTCTCAAGTGCAATGCTG | 59.829 | 55.000 | 6.82 | 0.00 | 36.36 | 4.41 |
2013 | 2309 | 1.334384 | GGAAGGTGAGGGAGGCTCTC | 61.334 | 65.000 | 15.23 | 11.11 | 0.00 | 3.20 |
2065 | 2361 | 1.412079 | AAGCCCAAAGACATTGCACA | 58.588 | 45.000 | 0.00 | 0.00 | 37.73 | 4.57 |
2088 | 2384 | 1.378762 | CTCCCCTTGGCTTTTCGGA | 59.621 | 57.895 | 0.00 | 0.00 | 0.00 | 4.55 |
2093 | 2389 | 0.560688 | TTTGGACTCCCCTTGGCTTT | 59.439 | 50.000 | 0.00 | 0.00 | 35.38 | 3.51 |
2129 | 2426 | 0.616371 | CTACCATCACCGTGGGGAAA | 59.384 | 55.000 | 14.69 | 4.39 | 43.77 | 3.13 |
2213 | 2510 | 3.456277 | GGTATGAGTGGAAGGAACCTCAT | 59.544 | 47.826 | 6.29 | 6.29 | 44.52 | 2.90 |
2239 | 2536 | 2.101582 | CGTGCTCTAAGGCTAAGATGGT | 59.898 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
2323 | 2620 | 3.949113 | GGCCGAATGTAAGGTTAATTGGA | 59.051 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
2514 | 3156 | 3.157087 | CACATAGTAAATCCATGGCCCC | 58.843 | 50.000 | 6.96 | 0.00 | 0.00 | 5.80 |
2598 | 3240 | 8.692110 | ACACATGCAGTACATCAAATTAATTG | 57.308 | 30.769 | 0.39 | 0.00 | 36.64 | 2.32 |
2693 | 3341 | 3.502211 | CCGTACCATTGGATTAGCATTCC | 59.498 | 47.826 | 10.37 | 0.00 | 0.00 | 3.01 |
2760 | 3408 | 8.312564 | AGTACTCCTTCTCCAAACTAAATGTAC | 58.687 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
2797 | 3445 | 9.035607 | CAAAGTTGAATGCATACTACTAGTAGG | 57.964 | 37.037 | 29.05 | 15.43 | 35.74 | 3.18 |
2920 | 3634 | 2.867647 | GCCCAAGTTTTTCTGCATCCAC | 60.868 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2976 | 3690 | 3.135712 | TCATACCCAACAACGGAGCATAT | 59.864 | 43.478 | 0.00 | 0.00 | 0.00 | 1.78 |
3012 | 3726 | 3.427233 | GCAAATGACTCTCAATCAGGTGC | 60.427 | 47.826 | 0.00 | 0.00 | 34.54 | 5.01 |
3053 | 3775 | 6.136155 | AGCCATTTTGGTAAGGTAGCATATT | 58.864 | 36.000 | 0.00 | 0.00 | 40.46 | 1.28 |
3122 | 3952 | 4.273235 | GGTTGGAGGAAAATGTTTTGCTTG | 59.727 | 41.667 | 12.48 | 0.00 | 46.67 | 4.01 |
3221 | 4999 | 5.560724 | TGGACTAAAATACTGAGCTTTGCT | 58.439 | 37.500 | 0.00 | 0.00 | 43.88 | 3.91 |
3252 | 5031 | 5.774690 | AGAAGGCAAGGTTTCACAAATATCA | 59.225 | 36.000 | 0.00 | 0.00 | 0.00 | 2.15 |
3309 | 5088 | 7.903995 | ATTGGTGCGTCAATTAATTTTGATT | 57.096 | 28.000 | 0.00 | 0.00 | 37.88 | 2.57 |
3616 | 6821 | 8.932945 | TCAGACTATTATTGTCAGTTAGCTTG | 57.067 | 34.615 | 9.21 | 0.00 | 36.94 | 4.01 |
3633 | 6838 | 9.900710 | GTGTACGAATAATCAGATTCAGACTAT | 57.099 | 33.333 | 0.00 | 0.00 | 35.86 | 2.12 |
3705 | 6914 | 0.759959 | TGTACTTGAGGCCCACGAAA | 59.240 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
3912 | 7121 | 3.407967 | GGCCAGTGGATCGGGGAA | 61.408 | 66.667 | 15.20 | 0.00 | 32.04 | 3.97 |
4005 | 7214 | 0.670546 | CAACGTTGGAGGCGATGACT | 60.671 | 55.000 | 20.71 | 0.00 | 34.75 | 3.41 |
4669 | 8555 | 9.757227 | TGAAGGAAAACAAACCAAAACATATAG | 57.243 | 29.630 | 0.00 | 0.00 | 0.00 | 1.31 |
4848 | 10795 | 2.434884 | CATGACCGCAAGACCGCT | 60.435 | 61.111 | 0.00 | 0.00 | 43.02 | 5.52 |
4861 | 10808 | 1.219522 | CGATCAGCAGCGATGCATGA | 61.220 | 55.000 | 29.24 | 25.60 | 37.25 | 3.07 |
4867 | 10814 | 0.386838 | TCATGACGATCAGCAGCGAT | 59.613 | 50.000 | 0.00 | 0.10 | 0.00 | 4.58 |
4868 | 10815 | 0.248784 | CTCATGACGATCAGCAGCGA | 60.249 | 55.000 | 0.00 | 0.00 | 0.00 | 4.93 |
4926 | 10886 | 7.187824 | ACTCTCCAAGATAGCATAAACTCAA | 57.812 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4938 | 10898 | 5.935945 | TGGTTTGTTCAACTCTCCAAGATA | 58.064 | 37.500 | 0.00 | 0.00 | 35.46 | 1.98 |
4948 | 10908 | 4.942761 | AATCATGCTGGTTTGTTCAACT | 57.057 | 36.364 | 0.00 | 0.00 | 35.46 | 3.16 |
4976 | 10936 | 6.070251 | TGTCTTATTCACCTAGGATCTTTGCA | 60.070 | 38.462 | 17.98 | 0.00 | 0.00 | 4.08 |
5070 | 11032 | 1.662122 | GTGTGGGCGTTAGTATTTCCG | 59.338 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
5071 | 11033 | 1.662122 | CGTGTGGGCGTTAGTATTTCC | 59.338 | 52.381 | 0.00 | 0.00 | 0.00 | 3.13 |
5072 | 11034 | 2.340337 | ACGTGTGGGCGTTAGTATTTC | 58.660 | 47.619 | 0.00 | 0.00 | 43.04 | 2.17 |
5073 | 11035 | 2.460757 | ACGTGTGGGCGTTAGTATTT | 57.539 | 45.000 | 0.00 | 0.00 | 43.04 | 1.40 |
5074 | 11036 | 3.450578 | CATACGTGTGGGCGTTAGTATT | 58.549 | 45.455 | 4.09 | 0.00 | 43.04 | 1.89 |
5075 | 11037 | 2.223876 | CCATACGTGTGGGCGTTAGTAT | 60.224 | 50.000 | 22.66 | 0.00 | 43.04 | 2.12 |
5076 | 11038 | 1.134753 | CCATACGTGTGGGCGTTAGTA | 59.865 | 52.381 | 22.66 | 0.00 | 43.04 | 1.82 |
5077 | 11039 | 0.108520 | CCATACGTGTGGGCGTTAGT | 60.109 | 55.000 | 22.66 | 0.00 | 43.04 | 2.24 |
5078 | 11040 | 2.673074 | CCATACGTGTGGGCGTTAG | 58.327 | 57.895 | 22.66 | 0.00 | 43.04 | 2.34 |
5079 | 11041 | 4.915298 | CCATACGTGTGGGCGTTA | 57.085 | 55.556 | 22.66 | 0.00 | 43.04 | 3.18 |
5098 | 11060 | 4.323477 | TGGGCGAGTTGGGGAACG | 62.323 | 66.667 | 0.00 | 0.00 | 0.00 | 3.95 |
5099 | 11061 | 2.671963 | GTGGGCGAGTTGGGGAAC | 60.672 | 66.667 | 0.00 | 0.00 | 0.00 | 3.62 |
5100 | 11062 | 2.534396 | ATGTGGGCGAGTTGGGGAA | 61.534 | 57.895 | 0.00 | 0.00 | 0.00 | 3.97 |
5101 | 11063 | 2.933287 | ATGTGGGCGAGTTGGGGA | 60.933 | 61.111 | 0.00 | 0.00 | 0.00 | 4.81 |
5102 | 11064 | 2.751436 | CATGTGGGCGAGTTGGGG | 60.751 | 66.667 | 0.00 | 0.00 | 0.00 | 4.96 |
5103 | 11065 | 2.034066 | ACATGTGGGCGAGTTGGG | 59.966 | 61.111 | 0.00 | 0.00 | 0.00 | 4.12 |
5104 | 11066 | 1.600636 | ACACATGTGGGCGAGTTGG | 60.601 | 57.895 | 28.64 | 0.77 | 34.19 | 3.77 |
5105 | 11067 | 1.575922 | CACACATGTGGGCGAGTTG | 59.424 | 57.895 | 28.64 | 12.76 | 42.10 | 3.16 |
5106 | 11068 | 4.063529 | CACACATGTGGGCGAGTT | 57.936 | 55.556 | 28.64 | 3.84 | 42.10 | 3.01 |
5118 | 11080 | 1.525077 | GTTGGAGAACGCCCACACA | 60.525 | 57.895 | 0.00 | 0.00 | 32.58 | 3.72 |
5131 | 11093 | 3.509137 | GACGTGTGGGCGAGTTGGA | 62.509 | 63.158 | 0.00 | 0.00 | 35.59 | 3.53 |
5158 | 11120 | 8.708742 | CAAGATTCGTATAAAAGACAGTGAACA | 58.291 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
5173 | 11135 | 5.120208 | CACCTTTTCGTGTCAAGATTCGTAT | 59.880 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
5174 | 11136 | 4.446385 | CACCTTTTCGTGTCAAGATTCGTA | 59.554 | 41.667 | 0.00 | 0.00 | 0.00 | 3.43 |
5209 | 11171 | 0.892358 | ACCAGCCTCGTTCTACGTGA | 60.892 | 55.000 | 0.00 | 0.00 | 43.14 | 4.35 |
5217 | 11179 | 2.111043 | CCACACACCAGCCTCGTT | 59.889 | 61.111 | 0.00 | 0.00 | 0.00 | 3.85 |
5250 | 11212 | 2.438254 | GTGATGCGGGCATGTGGA | 60.438 | 61.111 | 11.44 | 0.00 | 36.70 | 4.02 |
5293 | 11255 | 3.319972 | TGTGTGGCTAGAAACTAGTTCGT | 59.680 | 43.478 | 8.95 | 1.69 | 41.52 | 3.85 |
5307 | 11269 | 4.586235 | GGTGGTGGCTGTGTGGCT | 62.586 | 66.667 | 0.00 | 0.00 | 42.34 | 4.75 |
5308 | 11270 | 3.190738 | TAGGTGGTGGCTGTGTGGC | 62.191 | 63.158 | 0.00 | 0.00 | 42.18 | 5.01 |
5473 | 11438 | 2.030274 | GTGTGTTTATCTGGTTGCCACC | 60.030 | 50.000 | 0.00 | 0.00 | 44.56 | 4.61 |
5503 | 11468 | 5.879237 | AGTTGCCATGTATTGTTAATCACG | 58.121 | 37.500 | 0.00 | 0.00 | 0.00 | 4.35 |
5536 | 11501 | 5.411361 | GTGTTTATCTAGTTGCCATGTGTGA | 59.589 | 40.000 | 0.00 | 0.00 | 0.00 | 3.58 |
5542 | 11507 | 5.357878 | CCATGTGTGTTTATCTAGTTGCCAT | 59.642 | 40.000 | 0.00 | 0.00 | 0.00 | 4.40 |
5553 | 11518 | 5.070001 | ACAGTAGTTGCCATGTGTGTTTAT | 58.930 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
5587 | 11552 | 4.391830 | CGTGTGTGATTAACTACTTGCCAT | 59.608 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
5633 | 11598 | 7.523052 | GCCATGTCTAATTTTTGGTAGTTGTCA | 60.523 | 37.037 | 0.00 | 0.00 | 0.00 | 3.58 |
5719 | 11685 | 3.521531 | TGGTTGGCAGATGTAGTTATCCA | 59.478 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
5792 | 11758 | 4.379813 | CGAAGCAAAAATGCCTACATGTCT | 60.380 | 41.667 | 0.00 | 0.00 | 36.36 | 3.41 |
5800 | 11766 | 3.199764 | GCACGAAGCAAAAATGCCT | 57.800 | 47.368 | 0.00 | 0.00 | 44.79 | 4.75 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.