Multiple sequence alignment - TraesCS7A01G474400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G474400 chr7A 100.000 3257 0 0 1 3257 669770514 669773770 0.000000e+00 6015.0
1 TraesCS7A01G474400 chr7A 91.803 122 10 0 4 125 143179944 143179823 1.550000e-38 171.0
2 TraesCS7A01G474400 chr7A 84.921 126 17 2 3 127 519850782 519850906 3.410000e-25 126.0
3 TraesCS7A01G474400 chr7D 92.639 1834 95 22 1430 3257 577704354 577706153 0.000000e+00 2603.0
4 TraesCS7A01G474400 chr7D 96.588 381 12 1 996 1375 577703487 577703867 5.930000e-177 630.0
5 TraesCS7A01G474400 chr7D 86.652 442 22 14 544 964 577703062 577703487 3.830000e-124 455.0
6 TraesCS7A01G474400 chr7D 94.403 268 14 1 255 521 133332957 133333224 8.410000e-111 411.0
7 TraesCS7A01G474400 chr7B 89.449 1905 147 33 991 2877 641141358 641143226 0.000000e+00 2355.0
8 TraesCS7A01G474400 chr7B 94.007 267 14 2 257 522 388900445 388900180 1.410000e-108 403.0
9 TraesCS7A01G474400 chr7B 81.373 408 39 23 2857 3257 641143320 641143697 6.830000e-77 298.0
10 TraesCS7A01G474400 chr7B 79.508 366 20 22 583 948 641141037 641141347 3.290000e-50 209.0
11 TraesCS7A01G474400 chr4A 81.044 1514 168 65 876 2336 544380836 544382283 0.000000e+00 1096.0
12 TraesCS7A01G474400 chr4A 94.796 269 13 1 254 521 200056020 200056288 5.030000e-113 418.0
13 TraesCS7A01G474400 chr4A 93.657 268 16 1 255 521 453679721 453679988 1.820000e-107 399.0
14 TraesCS7A01G474400 chr4A 84.375 128 18 2 3 129 501966200 501966326 1.230000e-24 124.0
15 TraesCS7A01G474400 chr3D 79.406 1481 197 55 812 2257 419463733 419465140 0.000000e+00 946.0
16 TraesCS7A01G474400 chr3D 85.832 847 101 11 1497 2336 419387004 419387838 0.000000e+00 881.0
17 TraesCS7A01G474400 chr3D 81.129 620 61 36 743 1360 419386378 419386943 2.310000e-121 446.0
18 TraesCS7A01G474400 chr3D 94.382 267 14 1 254 519 109257674 109257940 3.020000e-110 409.0
19 TraesCS7A01G474400 chr3D 78.698 338 38 16 814 1138 418875526 418875842 9.220000e-46 195.0
20 TraesCS7A01G474400 chr3D 78.698 338 38 16 814 1138 418890825 418891141 9.220000e-46 195.0
21 TraesCS7A01G474400 chr3D 77.600 375 48 19 991 1363 419515424 419515764 9.220000e-46 195.0
22 TraesCS7A01G474400 chr5D 86.867 830 93 8 1499 2323 442011548 442010730 0.000000e+00 915.0
23 TraesCS7A01G474400 chr5D 91.844 282 20 3 241 521 232836222 232835943 1.100000e-104 390.0
24 TraesCS7A01G474400 chr5D 80.962 499 52 26 885 1376 442012060 442011598 4.000000e-94 355.0
25 TraesCS7A01G474400 chr5D 94.656 131 6 1 2 132 490603055 490602926 5.510000e-48 202.0
26 TraesCS7A01G474400 chr3B 85.330 893 116 8 1447 2336 545668238 545669118 0.000000e+00 909.0
27 TraesCS7A01G474400 chr3B 85.066 904 118 11 1437 2336 545433035 545433925 0.000000e+00 905.0
28 TraesCS7A01G474400 chr3B 84.658 906 117 15 1437 2336 545494640 545495529 0.000000e+00 883.0
29 TraesCS7A01G474400 chr3B 80.645 682 69 45 712 1382 545432407 545433036 1.370000e-128 470.0
30 TraesCS7A01G474400 chr3B 79.034 725 80 42 668 1382 545562093 545562755 6.460000e-117 431.0
31 TraesCS7A01G474400 chr3B 80.410 536 64 29 858 1382 545667724 545668229 1.430000e-98 370.0
32 TraesCS7A01G474400 chr3B 92.481 133 9 1 1 133 689924488 689924357 4.290000e-44 189.0
33 TraesCS7A01G474400 chr3B 88.281 128 12 1 3 130 765775598 765775722 2.020000e-32 150.0
34 TraesCS7A01G474400 chr5B 85.542 830 104 8 1499 2323 538038741 538037923 0.000000e+00 854.0
35 TraesCS7A01G474400 chr5B 94.318 264 14 1 257 519 432418687 432418424 1.410000e-108 403.0
36 TraesCS7A01G474400 chr5B 81.542 493 49 26 885 1371 538039250 538038794 5.130000e-98 368.0
37 TraesCS7A01G474400 chr5B 85.000 80 9 3 3044 3121 491144153 491144075 9.690000e-11 78.7
38 TraesCS7A01G474400 chr3A 83.662 912 120 16 1437 2336 531944485 531943591 0.000000e+00 832.0
39 TraesCS7A01G474400 chr3A 80.816 662 66 41 728 1382 531945091 531944484 2.290000e-126 462.0
40 TraesCS7A01G474400 chr3A 93.680 269 16 1 254 521 352501194 352500926 5.060000e-108 401.0
41 TraesCS7A01G474400 chr3A 75.579 561 74 38 812 1363 531702764 531702258 5.470000e-53 219.0
42 TraesCS7A01G474400 chr5A 93.040 273 17 2 255 526 622144079 622144350 6.550000e-107 398.0
43 TraesCS7A01G474400 chr5A 83.146 89 11 3 3051 3139 549199728 549199812 9.690000e-11 78.7
44 TraesCS7A01G474400 chr6D 95.420 131 5 1 2 131 297159039 297158909 1.180000e-49 207.0
45 TraesCS7A01G474400 chr6D 84.375 128 18 2 3 129 284851739 284851865 1.230000e-24 124.0
46 TraesCS7A01G474400 chr6D 88.333 60 6 1 3048 3107 455448270 455448328 1.620000e-08 71.3
47 TraesCS7A01G474400 chr2A 95.238 126 6 0 2 127 13123918 13124043 1.980000e-47 200.0
48 TraesCS7A01G474400 chr2A 86.667 150 11 5 618 763 46846170 46846314 1.210000e-34 158.0
49 TraesCS7A01G474400 chr2A 83.929 168 15 5 593 755 46847570 46847730 2.020000e-32 150.0
50 TraesCS7A01G474400 chr2A 92.982 57 4 0 586 642 46847527 46847583 2.080000e-12 84.2
51 TraesCS7A01G474400 chr2D 88.889 90 6 3 3050 3139 564093378 564093463 1.240000e-19 108.0
52 TraesCS7A01G474400 chr6B 79.518 83 12 4 3061 3143 692580712 692580789 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G474400 chr7A 669770514 669773770 3256 False 6015.000000 6015 100.000000 1 3257 1 chr7A.!!$F2 3256
1 TraesCS7A01G474400 chr7D 577703062 577706153 3091 False 1229.333333 2603 91.959667 544 3257 3 chr7D.!!$F2 2713
2 TraesCS7A01G474400 chr7B 641141037 641143697 2660 False 954.000000 2355 83.443333 583 3257 3 chr7B.!!$F1 2674
3 TraesCS7A01G474400 chr4A 544380836 544382283 1447 False 1096.000000 1096 81.044000 876 2336 1 chr4A.!!$F4 1460
4 TraesCS7A01G474400 chr3D 419463733 419465140 1407 False 946.000000 946 79.406000 812 2257 1 chr3D.!!$F4 1445
5 TraesCS7A01G474400 chr3D 419386378 419387838 1460 False 663.500000 881 83.480500 743 2336 2 chr3D.!!$F6 1593
6 TraesCS7A01G474400 chr5D 442010730 442012060 1330 True 635.000000 915 83.914500 885 2323 2 chr5D.!!$R3 1438
7 TraesCS7A01G474400 chr3B 545494640 545495529 889 False 883.000000 883 84.658000 1437 2336 1 chr3B.!!$F1 899
8 TraesCS7A01G474400 chr3B 545432407 545433925 1518 False 687.500000 905 82.855500 712 2336 2 chr3B.!!$F4 1624
9 TraesCS7A01G474400 chr3B 545667724 545669118 1394 False 639.500000 909 82.870000 858 2336 2 chr3B.!!$F5 1478
10 TraesCS7A01G474400 chr3B 545562093 545562755 662 False 431.000000 431 79.034000 668 1382 1 chr3B.!!$F2 714
11 TraesCS7A01G474400 chr5B 538037923 538039250 1327 True 611.000000 854 83.542000 885 2323 2 chr5B.!!$R3 1438
12 TraesCS7A01G474400 chr3A 531943591 531945091 1500 True 647.000000 832 82.239000 728 2336 2 chr3A.!!$R3 1608
13 TraesCS7A01G474400 chr3A 531702258 531702764 506 True 219.000000 219 75.579000 812 1363 1 chr3A.!!$R2 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
531 532 0.033504 CCAGCCTAATGACGCGGTAT 59.966 55.0 12.47 0.32 0.00 2.73 F
804 818 0.098728 CGGTGGAAATTGCGTCCATC 59.901 55.0 0.75 0.00 46.67 3.51 F
1746 2262 0.109342 GGATCAACATCCGGATGCCT 59.891 55.0 38.44 25.63 39.52 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1704 2220 0.179936 GGTTGCTGAGGATGGAGGAG 59.820 60.000 0.0 0.0 0.00 3.69 R
2055 2577 1.062880 GTGAACAACGCTTTTCCGTCA 59.937 47.619 0.0 0.0 41.16 4.35 R
3122 3820 1.001268 CATGTACTCCATCCGTCCTCG 60.001 57.143 0.0 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.737467 CGGCAGACAATTTATGGACG 57.263 50.000 0.00 0.00 0.00 4.79
20 21 2.276201 CGGCAGACAATTTATGGACGA 58.724 47.619 0.00 0.00 0.00 4.20
21 22 2.872245 CGGCAGACAATTTATGGACGAT 59.128 45.455 0.00 0.00 0.00 3.73
22 23 4.055360 CGGCAGACAATTTATGGACGATA 58.945 43.478 0.00 0.00 0.00 2.92
23 24 4.150627 CGGCAGACAATTTATGGACGATAG 59.849 45.833 0.00 0.00 46.19 2.08
24 25 4.083802 GGCAGACAATTTATGGACGATAGC 60.084 45.833 0.00 0.00 42.67 2.97
25 26 4.511454 GCAGACAATTTATGGACGATAGCA 59.489 41.667 0.00 0.00 42.67 3.49
26 27 5.559035 GCAGACAATTTATGGACGATAGCAC 60.559 44.000 0.00 0.00 42.67 4.40
27 28 5.523552 CAGACAATTTATGGACGATAGCACA 59.476 40.000 0.00 0.00 42.67 4.57
28 29 6.203530 CAGACAATTTATGGACGATAGCACAT 59.796 38.462 0.00 0.00 42.67 3.21
29 30 7.384932 CAGACAATTTATGGACGATAGCACATA 59.615 37.037 0.00 0.00 42.67 2.29
30 31 8.097038 AGACAATTTATGGACGATAGCACATAT 58.903 33.333 0.00 0.00 37.67 1.78
31 32 8.256611 ACAATTTATGGACGATAGCACATATC 57.743 34.615 0.00 0.00 37.67 1.63
32 33 7.877612 ACAATTTATGGACGATAGCACATATCA 59.122 33.333 0.00 0.00 40.42 2.15
33 34 8.385858 CAATTTATGGACGATAGCACATATCAG 58.614 37.037 0.00 0.00 40.42 2.90
34 35 6.590234 TTATGGACGATAGCACATATCAGT 57.410 37.500 0.00 0.00 40.42 3.41
35 36 4.243007 TGGACGATAGCACATATCAGTG 57.757 45.455 0.00 0.00 40.42 3.66
44 45 3.867055 CACATATCAGTGCGTCCATTC 57.133 47.619 0.00 0.00 32.04 2.67
45 46 3.197265 CACATATCAGTGCGTCCATTCA 58.803 45.455 0.00 0.00 32.04 2.57
46 47 3.811497 CACATATCAGTGCGTCCATTCAT 59.189 43.478 0.00 0.00 32.04 2.57
47 48 4.990426 CACATATCAGTGCGTCCATTCATA 59.010 41.667 0.00 0.00 32.04 2.15
48 49 5.640783 CACATATCAGTGCGTCCATTCATAT 59.359 40.000 0.00 0.00 32.04 1.78
49 50 6.148315 CACATATCAGTGCGTCCATTCATATT 59.852 38.462 0.00 0.00 32.04 1.28
50 51 7.331687 CACATATCAGTGCGTCCATTCATATTA 59.668 37.037 0.00 0.00 32.04 0.98
51 52 8.043113 ACATATCAGTGCGTCCATTCATATTAT 58.957 33.333 0.00 0.00 0.00 1.28
52 53 6.974932 ATCAGTGCGTCCATTCATATTATC 57.025 37.500 0.00 0.00 0.00 1.75
53 54 5.852827 TCAGTGCGTCCATTCATATTATCA 58.147 37.500 0.00 0.00 0.00 2.15
54 55 6.287525 TCAGTGCGTCCATTCATATTATCAA 58.712 36.000 0.00 0.00 0.00 2.57
55 56 6.765512 TCAGTGCGTCCATTCATATTATCAAA 59.234 34.615 0.00 0.00 0.00 2.69
56 57 7.041848 TCAGTGCGTCCATTCATATTATCAAAG 60.042 37.037 0.00 0.00 0.00 2.77
57 58 6.767902 AGTGCGTCCATTCATATTATCAAAGT 59.232 34.615 0.00 0.00 0.00 2.66
58 59 6.852853 GTGCGTCCATTCATATTATCAAAGTG 59.147 38.462 0.00 0.00 0.00 3.16
59 60 6.017192 TGCGTCCATTCATATTATCAAAGTGG 60.017 38.462 0.00 0.00 0.00 4.00
60 61 6.204688 GCGTCCATTCATATTATCAAAGTGGA 59.795 38.462 0.00 0.00 0.00 4.02
61 62 7.571983 GCGTCCATTCATATTATCAAAGTGGAG 60.572 40.741 0.00 0.00 34.22 3.86
62 63 7.571983 CGTCCATTCATATTATCAAAGTGGAGC 60.572 40.741 0.00 0.00 34.22 4.70
63 64 6.427853 TCCATTCATATTATCAAAGTGGAGCG 59.572 38.462 0.00 0.00 0.00 5.03
64 65 6.348786 CCATTCATATTATCAAAGTGGAGCGG 60.349 42.308 0.00 0.00 0.00 5.52
65 66 5.545063 TCATATTATCAAAGTGGAGCGGA 57.455 39.130 0.00 0.00 0.00 5.54
66 67 5.297547 TCATATTATCAAAGTGGAGCGGAC 58.702 41.667 0.00 0.00 0.00 4.79
67 68 2.004583 TTATCAAAGTGGAGCGGACG 57.995 50.000 0.00 0.00 0.00 4.79
68 69 0.174845 TATCAAAGTGGAGCGGACGG 59.825 55.000 0.00 0.00 0.00 4.79
69 70 3.423154 CAAAGTGGAGCGGACGGC 61.423 66.667 0.00 0.00 44.05 5.68
78 79 2.785258 GCGGACGGCAAGATTGAC 59.215 61.111 0.00 0.00 42.87 3.18
79 80 2.032634 GCGGACGGCAAGATTGACA 61.033 57.895 0.00 0.00 42.87 3.58
80 81 1.369091 GCGGACGGCAAGATTGACAT 61.369 55.000 0.00 0.00 42.87 3.06
81 82 0.652592 CGGACGGCAAGATTGACATC 59.347 55.000 0.00 0.00 35.35 3.06
82 83 0.652592 GGACGGCAAGATTGACATCG 59.347 55.000 0.00 0.00 35.35 3.84
83 84 1.359848 GACGGCAAGATTGACATCGT 58.640 50.000 0.00 2.05 35.35 3.73
84 85 1.061131 GACGGCAAGATTGACATCGTG 59.939 52.381 0.00 0.00 40.73 4.35
88 89 2.169663 CAAGATTGACATCGTGCAGC 57.830 50.000 0.00 0.00 32.96 5.25
89 90 1.736126 CAAGATTGACATCGTGCAGCT 59.264 47.619 0.00 0.00 32.96 4.24
90 91 1.366679 AGATTGACATCGTGCAGCTG 58.633 50.000 10.11 10.11 34.17 4.24
91 92 1.081892 GATTGACATCGTGCAGCTGT 58.918 50.000 16.64 0.00 30.94 4.40
92 93 1.061711 GATTGACATCGTGCAGCTGTC 59.938 52.381 16.64 13.62 44.02 3.51
93 94 1.284297 TTGACATCGTGCAGCTGTCG 61.284 55.000 16.64 19.39 46.01 4.35
94 95 1.734477 GACATCGTGCAGCTGTCGT 60.734 57.895 24.17 14.00 36.44 4.34
95 96 1.949015 GACATCGTGCAGCTGTCGTG 61.949 60.000 24.17 22.26 36.44 4.35
96 97 3.114616 ATCGTGCAGCTGTCGTGC 61.115 61.111 24.17 10.01 41.59 5.34
100 101 4.939399 TGCAGCTGTCGTGCATAT 57.061 50.000 16.64 0.00 45.96 1.78
102 103 1.856802 TGCAGCTGTCGTGCATATAG 58.143 50.000 16.64 0.00 45.96 1.31
103 104 1.136891 TGCAGCTGTCGTGCATATAGT 59.863 47.619 16.64 0.00 45.96 2.12
104 105 1.524355 GCAGCTGTCGTGCATATAGTG 59.476 52.381 16.64 0.00 40.86 2.74
114 115 1.567504 GCATATAGTGCGTCGTTGGT 58.432 50.000 0.00 0.00 45.23 3.67
115 116 2.734670 GCATATAGTGCGTCGTTGGTA 58.265 47.619 0.00 0.00 45.23 3.25
116 117 3.314553 GCATATAGTGCGTCGTTGGTAT 58.685 45.455 0.00 0.00 45.23 2.73
117 118 4.478699 GCATATAGTGCGTCGTTGGTATA 58.521 43.478 0.00 0.00 45.23 1.47
118 119 4.557690 GCATATAGTGCGTCGTTGGTATAG 59.442 45.833 0.00 0.00 45.23 1.31
119 120 5.696822 CATATAGTGCGTCGTTGGTATAGT 58.303 41.667 0.00 0.00 0.00 2.12
120 121 6.621380 GCATATAGTGCGTCGTTGGTATAGTA 60.621 42.308 0.00 0.00 45.23 1.82
121 122 3.687572 AGTGCGTCGTTGGTATAGTAG 57.312 47.619 0.00 0.00 0.00 2.57
122 123 3.012518 AGTGCGTCGTTGGTATAGTAGT 58.987 45.455 0.00 0.00 0.00 2.73
123 124 3.441572 AGTGCGTCGTTGGTATAGTAGTT 59.558 43.478 0.00 0.00 0.00 2.24
124 125 4.082571 AGTGCGTCGTTGGTATAGTAGTTT 60.083 41.667 0.00 0.00 0.00 2.66
125 126 4.263911 GTGCGTCGTTGGTATAGTAGTTTC 59.736 45.833 0.00 0.00 0.00 2.78
126 127 3.479949 GCGTCGTTGGTATAGTAGTTTCG 59.520 47.826 0.00 0.00 0.00 3.46
127 128 4.727734 GCGTCGTTGGTATAGTAGTTTCGA 60.728 45.833 0.00 0.00 0.00 3.71
128 129 5.505286 CGTCGTTGGTATAGTAGTTTCGAT 58.495 41.667 0.00 0.00 0.00 3.59
129 130 5.967674 CGTCGTTGGTATAGTAGTTTCGATT 59.032 40.000 0.00 0.00 0.00 3.34
130 131 6.470235 CGTCGTTGGTATAGTAGTTTCGATTT 59.530 38.462 0.00 0.00 0.00 2.17
131 132 7.008628 CGTCGTTGGTATAGTAGTTTCGATTTT 59.991 37.037 0.00 0.00 0.00 1.82
132 133 8.650714 GTCGTTGGTATAGTAGTTTCGATTTTT 58.349 33.333 0.00 0.00 0.00 1.94
152 153 4.394439 TTTTGGTAAGGTTGACTTTGGC 57.606 40.909 0.00 0.00 40.64 4.52
153 154 3.306472 TTGGTAAGGTTGACTTTGGCT 57.694 42.857 0.00 0.00 40.64 4.75
154 155 2.858745 TGGTAAGGTTGACTTTGGCTC 58.141 47.619 0.00 0.00 40.64 4.70
155 156 2.173782 TGGTAAGGTTGACTTTGGCTCA 59.826 45.455 0.00 0.00 40.64 4.26
156 157 3.219281 GGTAAGGTTGACTTTGGCTCAA 58.781 45.455 0.00 0.00 40.64 3.02
157 158 3.634910 GGTAAGGTTGACTTTGGCTCAAA 59.365 43.478 1.27 1.27 40.64 2.69
168 169 4.972591 GCTCAAAGCCAAACGCAT 57.027 50.000 0.00 0.00 41.38 4.73
169 170 2.729378 GCTCAAAGCCAAACGCATC 58.271 52.632 0.00 0.00 41.38 3.91
170 171 0.733909 GCTCAAAGCCAAACGCATCC 60.734 55.000 0.00 0.00 41.38 3.51
171 172 0.454957 CTCAAAGCCAAACGCATCCG 60.455 55.000 0.00 0.00 41.38 4.18
172 173 0.886938 TCAAAGCCAAACGCATCCGA 60.887 50.000 0.00 0.00 41.38 4.55
173 174 0.039617 CAAAGCCAAACGCATCCGAA 60.040 50.000 0.00 0.00 41.38 4.30
174 175 0.887933 AAAGCCAAACGCATCCGAAT 59.112 45.000 0.00 0.00 41.38 3.34
175 176 1.745232 AAGCCAAACGCATCCGAATA 58.255 45.000 0.00 0.00 41.38 1.75
176 177 1.745232 AGCCAAACGCATCCGAATAA 58.255 45.000 0.00 0.00 41.38 1.40
177 178 2.297701 AGCCAAACGCATCCGAATAAT 58.702 42.857 0.00 0.00 41.38 1.28
178 179 2.033299 AGCCAAACGCATCCGAATAATG 59.967 45.455 0.00 0.00 41.38 1.90
179 180 2.384382 CCAAACGCATCCGAATAATGC 58.616 47.619 0.00 0.00 44.81 3.56
186 187 3.228749 GCATCCGAATAATGCACAATCG 58.771 45.455 3.35 0.00 46.93 3.34
191 192 4.271590 CGAATAATGCACAATCGGAACA 57.728 40.909 0.00 0.00 0.00 3.18
192 193 4.847633 CGAATAATGCACAATCGGAACAT 58.152 39.130 0.00 0.00 0.00 2.71
193 194 4.671964 CGAATAATGCACAATCGGAACATG 59.328 41.667 0.00 0.00 0.00 3.21
194 195 2.945447 AATGCACAATCGGAACATGG 57.055 45.000 0.00 0.00 0.00 3.66
195 196 2.127271 ATGCACAATCGGAACATGGA 57.873 45.000 0.00 0.00 0.00 3.41
196 197 1.164411 TGCACAATCGGAACATGGAC 58.836 50.000 0.00 0.00 0.00 4.02
197 198 0.451783 GCACAATCGGAACATGGACC 59.548 55.000 0.00 0.00 0.00 4.46
198 199 1.950484 GCACAATCGGAACATGGACCT 60.950 52.381 0.00 0.00 0.00 3.85
199 200 1.739466 CACAATCGGAACATGGACCTG 59.261 52.381 0.00 0.00 0.00 4.00
200 201 0.734889 CAATCGGAACATGGACCTGC 59.265 55.000 0.00 0.00 0.00 4.85
201 202 0.327924 AATCGGAACATGGACCTGCA 59.672 50.000 0.00 0.00 0.00 4.41
202 203 0.548031 ATCGGAACATGGACCTGCAT 59.452 50.000 0.00 0.00 0.00 3.96
203 204 0.392863 TCGGAACATGGACCTGCATG 60.393 55.000 5.32 5.32 35.13 4.06
204 205 0.392863 CGGAACATGGACCTGCATGA 60.393 55.000 13.17 0.00 33.38 3.07
205 206 1.838112 GGAACATGGACCTGCATGAA 58.162 50.000 13.17 0.00 33.38 2.57
206 207 1.474077 GGAACATGGACCTGCATGAAC 59.526 52.381 13.17 6.61 33.38 3.18
207 208 2.161855 GAACATGGACCTGCATGAACA 58.838 47.619 13.17 0.00 33.38 3.18
208 209 1.830279 ACATGGACCTGCATGAACAG 58.170 50.000 13.17 0.00 37.42 3.16
209 210 0.454600 CATGGACCTGCATGAACAGC 59.545 55.000 0.00 0.00 36.29 4.40
210 211 0.038599 ATGGACCTGCATGAACAGCA 59.961 50.000 0.00 0.00 40.19 4.41
215 216 4.092652 TGCATGAACAGCAGCGCG 62.093 61.111 0.00 0.00 37.02 6.86
217 218 4.824166 CATGAACAGCAGCGCGCC 62.824 66.667 30.33 14.19 44.04 6.53
241 242 3.674997 GGCAACTTGTCTCCTTATGTCA 58.325 45.455 0.00 0.00 0.00 3.58
242 243 3.437049 GGCAACTTGTCTCCTTATGTCAC 59.563 47.826 0.00 0.00 0.00 3.67
243 244 4.319177 GCAACTTGTCTCCTTATGTCACT 58.681 43.478 0.00 0.00 0.00 3.41
244 245 5.479306 GCAACTTGTCTCCTTATGTCACTA 58.521 41.667 0.00 0.00 0.00 2.74
245 246 5.578727 GCAACTTGTCTCCTTATGTCACTAG 59.421 44.000 0.00 0.00 0.00 2.57
246 247 5.923733 ACTTGTCTCCTTATGTCACTAGG 57.076 43.478 0.00 0.00 0.00 3.02
247 248 5.334421 ACTTGTCTCCTTATGTCACTAGGT 58.666 41.667 0.00 0.00 0.00 3.08
248 249 5.780793 ACTTGTCTCCTTATGTCACTAGGTT 59.219 40.000 0.00 0.00 0.00 3.50
249 250 6.952358 ACTTGTCTCCTTATGTCACTAGGTTA 59.048 38.462 0.00 0.00 0.00 2.85
250 251 7.620094 ACTTGTCTCCTTATGTCACTAGGTTAT 59.380 37.037 0.00 0.00 0.00 1.89
251 252 7.584122 TGTCTCCTTATGTCACTAGGTTATC 57.416 40.000 0.00 0.00 0.00 1.75
252 253 6.262496 TGTCTCCTTATGTCACTAGGTTATCG 59.738 42.308 0.00 0.00 0.00 2.92
253 254 5.241064 TCTCCTTATGTCACTAGGTTATCGC 59.759 44.000 0.00 0.00 0.00 4.58
254 255 5.138276 TCCTTATGTCACTAGGTTATCGCT 58.862 41.667 0.00 0.00 0.00 4.93
255 256 6.301486 TCCTTATGTCACTAGGTTATCGCTA 58.699 40.000 0.00 0.00 0.00 4.26
256 257 6.774170 TCCTTATGTCACTAGGTTATCGCTAA 59.226 38.462 0.00 0.00 0.00 3.09
257 258 7.040617 TCCTTATGTCACTAGGTTATCGCTAAG 60.041 40.741 0.00 0.00 0.00 2.18
258 259 4.913335 TGTCACTAGGTTATCGCTAAGG 57.087 45.455 0.00 0.00 0.00 2.69
259 260 3.067742 TGTCACTAGGTTATCGCTAAGGC 59.932 47.826 0.00 0.00 0.00 4.35
260 261 3.318557 GTCACTAGGTTATCGCTAAGGCT 59.681 47.826 0.00 0.00 36.09 4.58
261 262 4.518211 GTCACTAGGTTATCGCTAAGGCTA 59.482 45.833 0.00 0.00 36.09 3.93
262 263 4.760715 TCACTAGGTTATCGCTAAGGCTAG 59.239 45.833 0.00 0.00 36.09 3.42
263 264 4.519730 CACTAGGTTATCGCTAAGGCTAGT 59.480 45.833 0.00 0.00 36.09 2.57
264 265 4.761227 ACTAGGTTATCGCTAAGGCTAGTC 59.239 45.833 0.00 0.00 36.09 2.59
265 266 3.563223 AGGTTATCGCTAAGGCTAGTCA 58.437 45.455 0.00 0.00 36.09 3.41
266 267 4.153411 AGGTTATCGCTAAGGCTAGTCAT 58.847 43.478 0.00 0.00 36.09 3.06
267 268 5.322754 AGGTTATCGCTAAGGCTAGTCATA 58.677 41.667 0.00 0.00 36.09 2.15
268 269 5.416326 AGGTTATCGCTAAGGCTAGTCATAG 59.584 44.000 2.20 2.20 36.09 2.23
269 270 5.183522 GGTTATCGCTAAGGCTAGTCATAGT 59.816 44.000 8.30 0.00 36.09 2.12
270 271 4.775058 ATCGCTAAGGCTAGTCATAGTG 57.225 45.455 12.75 12.75 36.09 2.74
271 272 3.816994 TCGCTAAGGCTAGTCATAGTGA 58.183 45.455 16.60 16.60 33.74 3.41
272 273 3.815962 TCGCTAAGGCTAGTCATAGTGAG 59.184 47.826 16.60 5.86 32.70 3.51
273 274 3.815962 CGCTAAGGCTAGTCATAGTGAGA 59.184 47.826 13.52 0.00 36.09 3.27
274 275 4.083537 CGCTAAGGCTAGTCATAGTGAGAG 60.084 50.000 13.52 0.00 36.09 3.20
275 276 4.825085 GCTAAGGCTAGTCATAGTGAGAGT 59.175 45.833 8.30 0.00 35.22 3.24
276 277 5.998981 GCTAAGGCTAGTCATAGTGAGAGTA 59.001 44.000 8.30 0.00 35.22 2.59
277 278 6.487331 GCTAAGGCTAGTCATAGTGAGAGTAA 59.513 42.308 8.30 0.00 35.22 2.24
278 279 6.702716 AAGGCTAGTCATAGTGAGAGTAAC 57.297 41.667 0.00 0.00 0.00 2.50
279 280 6.008696 AGGCTAGTCATAGTGAGAGTAACT 57.991 41.667 0.00 0.00 0.00 2.24
280 281 6.428295 AGGCTAGTCATAGTGAGAGTAACTT 58.572 40.000 0.00 0.00 0.00 2.66
281 282 7.575505 AGGCTAGTCATAGTGAGAGTAACTTA 58.424 38.462 0.00 0.00 0.00 2.24
282 283 7.717875 AGGCTAGTCATAGTGAGAGTAACTTAG 59.282 40.741 0.00 0.00 0.00 2.18
283 284 7.499895 GGCTAGTCATAGTGAGAGTAACTTAGT 59.500 40.741 0.00 0.00 0.00 2.24
284 285 9.545105 GCTAGTCATAGTGAGAGTAACTTAGTA 57.455 37.037 0.00 0.00 0.00 1.82
287 288 9.962809 AGTCATAGTGAGAGTAACTTAGTAAGT 57.037 33.333 9.85 9.85 45.46 2.24
299 300 9.890352 AGTAACTTAGTAAGTAATATAGCGCAC 57.110 33.333 15.84 0.00 41.91 5.34
300 301 9.890352 GTAACTTAGTAAGTAATATAGCGCACT 57.110 33.333 15.84 0.00 41.91 4.40
302 303 9.460906 AACTTAGTAAGTAATATAGCGCACTTC 57.539 33.333 15.84 4.08 41.91 3.01
303 304 7.802251 ACTTAGTAAGTAATATAGCGCACTTCG 59.198 37.037 14.00 0.00 40.69 3.79
304 305 6.309712 AGTAAGTAATATAGCGCACTTCGA 57.690 37.500 11.47 0.00 41.67 3.71
305 306 6.372185 AGTAAGTAATATAGCGCACTTCGAG 58.628 40.000 11.47 0.00 41.67 4.04
306 307 5.434352 AAGTAATATAGCGCACTTCGAGA 57.566 39.130 11.47 0.00 41.67 4.04
307 308 5.434352 AGTAATATAGCGCACTTCGAGAA 57.566 39.130 11.47 0.00 41.67 2.87
308 309 5.828747 AGTAATATAGCGCACTTCGAGAAA 58.171 37.500 11.47 0.00 41.67 2.52
309 310 6.448006 AGTAATATAGCGCACTTCGAGAAAT 58.552 36.000 11.47 0.00 41.67 2.17
310 311 6.924060 AGTAATATAGCGCACTTCGAGAAATT 59.076 34.615 11.47 0.00 41.67 1.82
311 312 6.604735 AATATAGCGCACTTCGAGAAATTT 57.395 33.333 11.47 0.00 41.67 1.82
312 313 4.946784 ATAGCGCACTTCGAGAAATTTT 57.053 36.364 11.47 0.00 41.67 1.82
313 314 3.626028 AGCGCACTTCGAGAAATTTTT 57.374 38.095 11.47 0.00 41.67 1.94
314 315 3.300009 AGCGCACTTCGAGAAATTTTTG 58.700 40.909 11.47 0.00 41.67 2.44
315 316 2.160104 GCGCACTTCGAGAAATTTTTGC 60.160 45.455 0.30 0.00 41.67 3.68
316 317 3.300009 CGCACTTCGAGAAATTTTTGCT 58.700 40.909 0.00 0.00 41.67 3.91
317 318 3.730715 CGCACTTCGAGAAATTTTTGCTT 59.269 39.130 0.00 0.00 41.67 3.91
318 319 4.909305 CGCACTTCGAGAAATTTTTGCTTA 59.091 37.500 0.00 0.00 41.67 3.09
319 320 5.569059 CGCACTTCGAGAAATTTTTGCTTAT 59.431 36.000 0.00 0.00 41.67 1.73
320 321 6.451571 CGCACTTCGAGAAATTTTTGCTTATG 60.452 38.462 0.00 0.00 41.67 1.90
321 322 6.363357 GCACTTCGAGAAATTTTTGCTTATGT 59.637 34.615 0.00 0.00 0.00 2.29
322 323 7.617935 GCACTTCGAGAAATTTTTGCTTATGTG 60.618 37.037 0.00 0.00 0.00 3.21
323 324 7.591057 CACTTCGAGAAATTTTTGCTTATGTGA 59.409 33.333 0.00 0.00 0.00 3.58
324 325 7.591426 ACTTCGAGAAATTTTTGCTTATGTGAC 59.409 33.333 0.00 0.00 0.00 3.67
325 326 6.964908 TCGAGAAATTTTTGCTTATGTGACA 58.035 32.000 0.00 0.00 0.00 3.58
326 327 7.592938 TCGAGAAATTTTTGCTTATGTGACAT 58.407 30.769 2.65 2.65 0.00 3.06
327 328 7.538334 TCGAGAAATTTTTGCTTATGTGACATG 59.462 33.333 8.61 0.00 0.00 3.21
328 329 7.326789 CGAGAAATTTTTGCTTATGTGACATGT 59.673 33.333 8.61 0.00 0.00 3.21
329 330 9.624697 GAGAAATTTTTGCTTATGTGACATGTA 57.375 29.630 8.61 0.00 0.00 2.29
330 331 9.630098 AGAAATTTTTGCTTATGTGACATGTAG 57.370 29.630 8.61 6.74 0.00 2.74
331 332 9.410556 GAAATTTTTGCTTATGTGACATGTAGT 57.589 29.630 8.61 0.00 0.00 2.73
332 333 9.762933 AAATTTTTGCTTATGTGACATGTAGTT 57.237 25.926 8.61 0.00 0.00 2.24
336 337 9.838975 TTTTGCTTATGTGACATGTAGTTAATG 57.161 29.630 8.61 0.00 0.00 1.90
337 338 8.785329 TTGCTTATGTGACATGTAGTTAATGA 57.215 30.769 8.61 0.00 0.00 2.57
338 339 8.424274 TGCTTATGTGACATGTAGTTAATGAG 57.576 34.615 8.61 0.00 0.00 2.90
339 340 8.257306 TGCTTATGTGACATGTAGTTAATGAGA 58.743 33.333 8.61 0.00 0.00 3.27
340 341 9.098355 GCTTATGTGACATGTAGTTAATGAGAA 57.902 33.333 8.61 0.00 0.00 2.87
343 344 7.889589 TGTGACATGTAGTTAATGAGAAGTG 57.110 36.000 0.00 0.00 0.00 3.16
344 345 6.873605 TGTGACATGTAGTTAATGAGAAGTGG 59.126 38.462 0.00 0.00 0.00 4.00
345 346 6.874134 GTGACATGTAGTTAATGAGAAGTGGT 59.126 38.462 0.00 0.00 0.00 4.16
346 347 8.033038 GTGACATGTAGTTAATGAGAAGTGGTA 58.967 37.037 0.00 0.00 0.00 3.25
347 348 8.590204 TGACATGTAGTTAATGAGAAGTGGTAA 58.410 33.333 0.00 0.00 0.00 2.85
348 349 8.773404 ACATGTAGTTAATGAGAAGTGGTAAC 57.227 34.615 0.00 0.00 0.00 2.50
381 382 9.278978 TGTTACTGTAACATAGCATTTTCAAGA 57.721 29.630 25.14 1.54 43.23 3.02
382 383 9.543018 GTTACTGTAACATAGCATTTTCAAGAC 57.457 33.333 22.30 0.00 38.52 3.01
383 384 7.744087 ACTGTAACATAGCATTTTCAAGACA 57.256 32.000 0.00 0.00 0.00 3.41
384 385 8.165239 ACTGTAACATAGCATTTTCAAGACAA 57.835 30.769 0.00 0.00 0.00 3.18
385 386 8.292448 ACTGTAACATAGCATTTTCAAGACAAG 58.708 33.333 0.00 0.00 0.00 3.16
386 387 8.389779 TGTAACATAGCATTTTCAAGACAAGA 57.610 30.769 0.00 0.00 0.00 3.02
387 388 9.013229 TGTAACATAGCATTTTCAAGACAAGAT 57.987 29.630 0.00 0.00 0.00 2.40
388 389 9.282247 GTAACATAGCATTTTCAAGACAAGATG 57.718 33.333 0.00 0.00 0.00 2.90
389 390 7.692460 ACATAGCATTTTCAAGACAAGATGA 57.308 32.000 0.00 0.00 0.00 2.92
390 391 7.759465 ACATAGCATTTTCAAGACAAGATGAG 58.241 34.615 0.00 0.00 0.00 2.90
391 392 7.392673 ACATAGCATTTTCAAGACAAGATGAGT 59.607 33.333 0.00 0.00 0.00 3.41
392 393 6.251655 AGCATTTTCAAGACAAGATGAGTC 57.748 37.500 0.00 0.00 36.26 3.36
394 395 7.164122 AGCATTTTCAAGACAAGATGAGTCTA 58.836 34.615 0.00 0.00 45.11 2.59
395 396 7.118971 AGCATTTTCAAGACAAGATGAGTCTAC 59.881 37.037 0.00 0.00 45.11 2.59
396 397 7.095060 GCATTTTCAAGACAAGATGAGTCTACA 60.095 37.037 0.00 0.00 45.11 2.74
397 398 8.777413 CATTTTCAAGACAAGATGAGTCTACAA 58.223 33.333 0.00 0.00 45.11 2.41
398 399 7.953158 TTTCAAGACAAGATGAGTCTACAAG 57.047 36.000 0.00 0.00 45.11 3.16
399 400 5.473931 TCAAGACAAGATGAGTCTACAAGC 58.526 41.667 0.00 0.00 45.11 4.01
400 401 5.244851 TCAAGACAAGATGAGTCTACAAGCT 59.755 40.000 0.00 0.00 45.11 3.74
401 402 6.434340 TCAAGACAAGATGAGTCTACAAGCTA 59.566 38.462 0.00 0.00 45.11 3.32
402 403 6.842437 AGACAAGATGAGTCTACAAGCTAA 57.158 37.500 0.00 0.00 44.10 3.09
403 404 7.416964 AGACAAGATGAGTCTACAAGCTAAT 57.583 36.000 0.00 0.00 44.10 1.73
404 405 7.846066 AGACAAGATGAGTCTACAAGCTAATT 58.154 34.615 0.00 0.00 44.10 1.40
405 406 8.972127 AGACAAGATGAGTCTACAAGCTAATTA 58.028 33.333 0.00 0.00 44.10 1.40
406 407 9.587772 GACAAGATGAGTCTACAAGCTAATTAA 57.412 33.333 0.00 0.00 33.30 1.40
413 414 9.587772 TGAGTCTACAAGCTAATTAATGAAGTC 57.412 33.333 0.00 0.00 0.00 3.01
414 415 8.950208 AGTCTACAAGCTAATTAATGAAGTCC 57.050 34.615 0.00 0.00 0.00 3.85
415 416 8.763601 AGTCTACAAGCTAATTAATGAAGTCCT 58.236 33.333 0.00 0.00 0.00 3.85
416 417 9.036671 GTCTACAAGCTAATTAATGAAGTCCTC 57.963 37.037 0.00 0.00 0.00 3.71
417 418 8.982723 TCTACAAGCTAATTAATGAAGTCCTCT 58.017 33.333 0.00 0.00 0.00 3.69
420 421 9.553064 ACAAGCTAATTAATGAAGTCCTCTATG 57.447 33.333 0.00 0.00 0.00 2.23
421 422 9.770097 CAAGCTAATTAATGAAGTCCTCTATGA 57.230 33.333 0.00 0.00 0.00 2.15
467 468 9.409918 TGCACTATGAAGATAGTAACTTAGACT 57.590 33.333 0.00 0.00 42.55 3.24
502 503 7.713750 TGCATGACACTAGTATAAGTTACTCC 58.286 38.462 0.00 0.00 0.00 3.85
503 504 7.146648 GCATGACACTAGTATAAGTTACTCCC 58.853 42.308 0.00 0.00 0.00 4.30
504 505 7.659186 CATGACACTAGTATAAGTTACTCCCC 58.341 42.308 0.00 0.00 0.00 4.81
505 506 6.734532 TGACACTAGTATAAGTTACTCCCCA 58.265 40.000 0.00 0.00 0.00 4.96
506 507 6.604795 TGACACTAGTATAAGTTACTCCCCAC 59.395 42.308 0.00 0.00 0.00 4.61
507 508 6.739664 ACACTAGTATAAGTTACTCCCCACT 58.260 40.000 0.00 0.00 0.00 4.00
508 509 7.876371 ACACTAGTATAAGTTACTCCCCACTA 58.124 38.462 0.00 0.00 0.00 2.74
509 510 8.509441 ACACTAGTATAAGTTACTCCCCACTAT 58.491 37.037 0.00 0.00 0.00 2.12
510 511 8.794553 CACTAGTATAAGTTACTCCCCACTATG 58.205 40.741 0.00 0.00 0.00 2.23
511 512 8.730948 ACTAGTATAAGTTACTCCCCACTATGA 58.269 37.037 0.00 0.00 0.00 2.15
512 513 7.836479 AGTATAAGTTACTCCCCACTATGAC 57.164 40.000 0.00 0.00 0.00 3.06
513 514 6.781507 AGTATAAGTTACTCCCCACTATGACC 59.218 42.308 0.00 0.00 0.00 4.02
514 515 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
515 516 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
516 517 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
517 518 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
518 519 0.692419 CTCCCCACTATGACCAGCCT 60.692 60.000 0.00 0.00 0.00 4.58
519 520 0.639943 TCCCCACTATGACCAGCCTA 59.360 55.000 0.00 0.00 0.00 3.93
520 521 1.009060 TCCCCACTATGACCAGCCTAA 59.991 52.381 0.00 0.00 0.00 2.69
521 522 2.057922 CCCCACTATGACCAGCCTAAT 58.942 52.381 0.00 0.00 0.00 1.73
522 523 2.224621 CCCCACTATGACCAGCCTAATG 60.225 54.545 0.00 0.00 0.00 1.90
523 524 2.705658 CCCACTATGACCAGCCTAATGA 59.294 50.000 0.00 0.00 0.00 2.57
524 525 3.495100 CCCACTATGACCAGCCTAATGAC 60.495 52.174 0.00 0.00 0.00 3.06
525 526 3.384668 CACTATGACCAGCCTAATGACG 58.615 50.000 0.00 0.00 0.00 4.35
526 527 2.224066 ACTATGACCAGCCTAATGACGC 60.224 50.000 0.00 0.00 0.00 5.19
527 528 0.530650 ATGACCAGCCTAATGACGCG 60.531 55.000 3.53 3.53 0.00 6.01
528 529 1.883084 GACCAGCCTAATGACGCGG 60.883 63.158 12.47 0.00 0.00 6.46
529 530 2.186903 CCAGCCTAATGACGCGGT 59.813 61.111 12.47 0.00 0.00 5.68
530 531 1.324740 ACCAGCCTAATGACGCGGTA 61.325 55.000 12.47 0.00 32.62 4.02
531 532 0.033504 CCAGCCTAATGACGCGGTAT 59.966 55.000 12.47 0.32 0.00 2.73
532 533 1.419374 CAGCCTAATGACGCGGTATC 58.581 55.000 12.47 0.00 0.00 2.24
533 534 0.317479 AGCCTAATGACGCGGTATCC 59.683 55.000 12.47 0.00 0.00 2.59
560 561 5.983790 TTTAATATGCTGTTTTCGCGTTG 57.016 34.783 5.77 0.00 0.00 4.10
578 579 0.248580 TGCAACTGAAGCTGCAAACG 60.249 50.000 5.94 0.00 43.23 3.60
608 614 1.009675 GCATGCCGGAGTTAATGCG 60.010 57.895 5.05 0.00 43.30 4.73
610 616 1.451207 ATGCCGGAGTTAATGCGCA 60.451 52.632 14.96 14.96 42.15 6.09
647 653 1.714899 ATGCCGGAGTTAATGCACGC 61.715 55.000 5.05 0.00 36.41 5.34
734 747 1.576356 GACAAGATCGAGACATGGCC 58.424 55.000 0.00 0.00 0.00 5.36
797 811 2.485122 CGCTCCGGTGGAAATTGC 59.515 61.111 0.00 0.00 0.00 3.56
798 812 2.485122 GCTCCGGTGGAAATTGCG 59.515 61.111 0.00 0.00 0.00 4.85
799 813 2.332654 GCTCCGGTGGAAATTGCGT 61.333 57.895 0.00 0.00 0.00 5.24
800 814 1.794222 CTCCGGTGGAAATTGCGTC 59.206 57.895 0.00 0.00 0.00 5.19
803 817 1.312371 CCGGTGGAAATTGCGTCCAT 61.312 55.000 0.75 0.00 46.67 3.41
804 818 0.098728 CGGTGGAAATTGCGTCCATC 59.901 55.000 0.75 0.00 46.67 3.51
805 819 0.098728 GGTGGAAATTGCGTCCATCG 59.901 55.000 0.75 0.00 46.67 3.84
883 909 2.570068 CCTTCGTCGTCGTCGTCG 60.570 66.667 14.18 14.18 46.06 5.12
953 1012 2.565210 AACAACACTCGACGTACACA 57.435 45.000 0.00 0.00 0.00 3.72
954 1013 1.831343 ACAACACTCGACGTACACAC 58.169 50.000 0.00 0.00 0.00 3.82
967 1026 2.223735 CGTACACACGGCCATCTATCTT 60.224 50.000 2.24 0.00 44.59 2.40
969 1028 1.134401 ACACACGGCCATCTATCTTGG 60.134 52.381 2.24 0.00 37.31 3.61
971 1030 1.139058 ACACGGCCATCTATCTTGGTC 59.861 52.381 2.24 0.00 36.57 4.02
975 1034 1.139058 GGCCATCTATCTTGGTCGTGT 59.861 52.381 0.00 0.00 36.57 4.49
976 1035 2.420129 GGCCATCTATCTTGGTCGTGTT 60.420 50.000 0.00 0.00 36.57 3.32
977 1036 2.866762 GCCATCTATCTTGGTCGTGTTC 59.133 50.000 0.00 0.00 36.57 3.18
978 1037 3.678806 GCCATCTATCTTGGTCGTGTTCA 60.679 47.826 0.00 0.00 36.57 3.18
979 1038 3.865745 CCATCTATCTTGGTCGTGTTCAC 59.134 47.826 0.00 0.00 0.00 3.18
980 1039 3.587797 TCTATCTTGGTCGTGTTCACC 57.412 47.619 0.00 0.00 0.00 4.02
981 1040 2.094906 TCTATCTTGGTCGTGTTCACCG 60.095 50.000 0.00 0.00 36.61 4.94
982 1041 0.391597 ATCTTGGTCGTGTTCACCGT 59.608 50.000 0.00 0.00 36.61 4.83
983 1042 0.249155 TCTTGGTCGTGTTCACCGTC 60.249 55.000 0.00 0.00 36.61 4.79
984 1043 0.249322 CTTGGTCGTGTTCACCGTCT 60.249 55.000 0.00 0.00 36.61 4.18
985 1044 0.176219 TTGGTCGTGTTCACCGTCTT 59.824 50.000 0.00 0.00 36.61 3.01
986 1045 0.528901 TGGTCGTGTTCACCGTCTTG 60.529 55.000 0.00 0.00 36.61 3.02
987 1046 1.219522 GGTCGTGTTCACCGTCTTGG 61.220 60.000 0.00 0.00 46.41 3.61
996 1055 3.632700 CCGTCTTGGTCGCGAAAA 58.367 55.556 12.06 7.96 0.00 2.29
997 1056 1.491563 CCGTCTTGGTCGCGAAAAG 59.508 57.895 21.10 21.10 0.00 2.27
999 1058 0.856641 CGTCTTGGTCGCGAAAAGAA 59.143 50.000 27.61 14.92 32.03 2.52
1077 1139 2.106938 TGCGAGGGCGACATCATC 59.893 61.111 2.83 0.00 42.48 2.92
1391 1489 4.036498 TCGATTCTAGCTTACTTCCTTCGG 59.964 45.833 0.00 0.00 0.00 4.30
1402 1500 3.089284 ACTTCCTTCGGCCCAAAATAAG 58.911 45.455 0.00 0.00 0.00 1.73
1415 1513 5.920840 GCCCAAAATAAGTGTCTCAACTTTC 59.079 40.000 0.00 0.00 40.77 2.62
1418 1516 8.846211 CCCAAAATAAGTGTCTCAACTTTCTAA 58.154 33.333 0.00 0.00 40.77 2.10
1444 1954 5.168647 AGACGGAGAGGGAGTATATACTG 57.831 47.826 20.13 5.68 36.50 2.74
1471 1981 6.676950 TGCATTGTTGTTTACGAAGATCAAT 58.323 32.000 0.00 0.00 32.04 2.57
1487 2000 7.148738 CGAAGATCAATATGTTCATTACGGAGG 60.149 40.741 0.00 0.00 35.60 4.30
1524 2040 7.254227 TGTTTATTATATTCAGGGTTGCGAC 57.746 36.000 0.00 0.00 0.00 5.19
1574 2090 1.002900 CAACAACAGCGACACGGAAAT 60.003 47.619 0.00 0.00 0.00 2.17
1623 2139 2.231529 CGAGGGTTAGAGGTGATCGAT 58.768 52.381 0.00 0.00 0.00 3.59
1746 2262 0.109342 GGATCAACATCCGGATGCCT 59.891 55.000 38.44 25.63 39.52 4.75
1833 2349 2.743195 CGCTACAGTGCTCCTCAAC 58.257 57.895 0.00 0.00 0.00 3.18
1962 2478 2.647875 CCGACATTTGCCGCCAAA 59.352 55.556 0.00 0.00 44.39 3.28
2019 2541 1.073923 GACCAAGAACATGTGACCCCT 59.926 52.381 0.00 0.00 0.00 4.79
2055 2577 2.224066 GCGCTACTACCAGGATGTGATT 60.224 50.000 0.00 0.00 0.00 2.57
2271 2811 4.789012 CAACTAACGTTGGGTAGGAGTA 57.211 45.455 16.48 0.00 45.28 2.59
2272 2812 4.488879 CAACTAACGTTGGGTAGGAGTAC 58.511 47.826 16.48 0.00 45.28 2.73
2294 2834 4.719773 ACCTAGTAGAATGCATGGTGGTTA 59.280 41.667 0.00 0.00 29.14 2.85
2341 2885 5.643777 CCGATGGAGAAGATGTAACACTTTT 59.356 40.000 0.00 0.00 0.00 2.27
2347 2891 6.706270 GGAGAAGATGTAACACTTTTCTGTCA 59.294 38.462 0.00 0.00 31.11 3.58
2357 2901 9.353999 GTAACACTTTTCTGTCAATCACTTTTT 57.646 29.630 0.00 0.00 0.00 1.94
2442 2986 8.806429 ATCACATGGTTCAATAAGTGTCATTA 57.194 30.769 0.00 0.00 0.00 1.90
2460 3004 9.522804 GTGTCATTATTGGTTTTGTCAAACTAA 57.477 29.630 0.00 0.00 44.64 2.24
2541 3085 6.985117 ACAAGTAACGGTGTATCTTCACTAA 58.015 36.000 0.00 0.00 38.28 2.24
2542 3086 7.609056 ACAAGTAACGGTGTATCTTCACTAAT 58.391 34.615 0.00 0.00 38.28 1.73
2543 3087 8.092687 ACAAGTAACGGTGTATCTTCACTAATT 58.907 33.333 0.00 0.00 38.28 1.40
2544 3088 9.577110 CAAGTAACGGTGTATCTTCACTAATTA 57.423 33.333 0.00 0.00 38.28 1.40
2658 3209 3.760580 AAATTTCGATGGTGGGCAAAA 57.239 38.095 0.00 0.00 0.00 2.44
2659 3210 3.760580 AATTTCGATGGTGGGCAAAAA 57.239 38.095 0.00 0.00 0.00 1.94
2826 3377 9.030301 GTGCACAAACATTTTGATTAGTTTACT 57.970 29.630 13.17 0.00 33.30 2.24
3026 3695 8.076781 AGTACTATATATCACAGCGTTCACAAG 58.923 37.037 0.00 0.00 0.00 3.16
3083 3781 9.265862 TCCATTCCATAATACAAGACCATTTTT 57.734 29.630 0.00 0.00 0.00 1.94
3097 3795 9.559958 CAAGACCATTTTTACAAGCTAACATAG 57.440 33.333 0.00 0.00 0.00 2.23
3123 3821 9.329913 GCTTGCAAAATGGTCTAATATTATACG 57.670 33.333 0.00 0.00 0.00 3.06
3132 3830 7.114754 TGGTCTAATATTATACGAGGACGGAT 58.885 38.462 0.00 0.00 45.64 4.18
3157 3855 4.847198 AGTACATGATTTGCCACATCTGA 58.153 39.130 0.00 0.00 0.00 3.27
3181 3879 4.997565 ACCATTCAGCGTGGAATTAATTG 58.002 39.130 5.17 0.00 39.12 2.32
3189 3887 6.035843 CAGCGTGGAATTAATTGCATTAACT 58.964 36.000 22.97 15.21 40.23 2.24
3190 3888 6.531240 CAGCGTGGAATTAATTGCATTAACTT 59.469 34.615 22.97 6.11 40.23 2.66
3191 3889 7.063308 CAGCGTGGAATTAATTGCATTAACTTT 59.937 33.333 22.97 5.22 40.23 2.66
3230 3931 4.151335 GCACACACTAGTTGATCAGAACAG 59.849 45.833 10.71 0.00 0.00 3.16
3233 3934 6.648310 CACACACTAGTTGATCAGAACAGATT 59.352 38.462 10.71 0.00 0.00 2.40
3234 3935 7.814587 CACACACTAGTTGATCAGAACAGATTA 59.185 37.037 10.71 0.00 0.00 1.75
3235 3936 8.031864 ACACACTAGTTGATCAGAACAGATTAG 58.968 37.037 10.71 0.00 0.00 1.73
3236 3937 8.246871 CACACTAGTTGATCAGAACAGATTAGA 58.753 37.037 0.00 0.00 0.00 2.10
3239 3940 9.030452 ACTAGTTGATCAGAACAGATTAGAAGT 57.970 33.333 0.00 0.00 0.00 3.01
3247 3948 9.953697 ATCAGAACAGATTAGAAGTAATACGTC 57.046 33.333 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.276201 TCGTCCATAAATTGTCTGCCG 58.724 47.619 0.00 0.00 0.00 5.69
1 2 4.083802 GCTATCGTCCATAAATTGTCTGCC 60.084 45.833 0.00 0.00 0.00 4.85
2 3 4.511454 TGCTATCGTCCATAAATTGTCTGC 59.489 41.667 0.00 0.00 0.00 4.26
3 4 5.523552 TGTGCTATCGTCCATAAATTGTCTG 59.476 40.000 0.00 0.00 0.00 3.51
4 5 5.670485 TGTGCTATCGTCCATAAATTGTCT 58.330 37.500 0.00 0.00 0.00 3.41
5 6 5.984233 TGTGCTATCGTCCATAAATTGTC 57.016 39.130 0.00 0.00 0.00 3.18
6 7 7.877612 TGATATGTGCTATCGTCCATAAATTGT 59.122 33.333 0.00 0.00 39.36 2.71
7 8 8.255394 TGATATGTGCTATCGTCCATAAATTG 57.745 34.615 0.00 0.00 39.36 2.32
8 9 8.097038 ACTGATATGTGCTATCGTCCATAAATT 58.903 33.333 0.00 0.00 39.36 1.82
9 10 7.547019 CACTGATATGTGCTATCGTCCATAAAT 59.453 37.037 0.00 0.00 39.36 1.40
10 11 6.868339 CACTGATATGTGCTATCGTCCATAAA 59.132 38.462 0.00 0.00 39.36 1.40
11 12 6.389906 CACTGATATGTGCTATCGTCCATAA 58.610 40.000 0.00 0.00 39.36 1.90
12 13 5.954335 CACTGATATGTGCTATCGTCCATA 58.046 41.667 0.00 0.00 39.36 2.74
13 14 4.814147 CACTGATATGTGCTATCGTCCAT 58.186 43.478 0.00 0.00 39.36 3.41
14 15 4.243007 CACTGATATGTGCTATCGTCCA 57.757 45.455 0.00 0.00 39.36 4.02
24 25 3.197265 TGAATGGACGCACTGATATGTG 58.803 45.455 0.00 0.00 40.62 3.21
25 26 3.541996 TGAATGGACGCACTGATATGT 57.458 42.857 0.00 0.00 0.00 2.29
26 27 6.732531 AATATGAATGGACGCACTGATATG 57.267 37.500 0.00 0.00 0.00 1.78
27 28 8.260114 TGATAATATGAATGGACGCACTGATAT 58.740 33.333 0.00 0.00 0.00 1.63
28 29 7.610865 TGATAATATGAATGGACGCACTGATA 58.389 34.615 0.00 0.00 0.00 2.15
29 30 6.466812 TGATAATATGAATGGACGCACTGAT 58.533 36.000 0.00 0.00 0.00 2.90
30 31 5.852827 TGATAATATGAATGGACGCACTGA 58.147 37.500 0.00 0.00 0.00 3.41
31 32 6.544038 TTGATAATATGAATGGACGCACTG 57.456 37.500 0.00 0.00 0.00 3.66
32 33 6.767902 ACTTTGATAATATGAATGGACGCACT 59.232 34.615 0.00 0.00 0.00 4.40
33 34 6.852853 CACTTTGATAATATGAATGGACGCAC 59.147 38.462 0.00 0.00 0.00 5.34
34 35 6.017192 CCACTTTGATAATATGAATGGACGCA 60.017 38.462 0.00 0.00 0.00 5.24
35 36 6.204688 TCCACTTTGATAATATGAATGGACGC 59.795 38.462 0.00 0.00 0.00 5.19
36 37 7.571983 GCTCCACTTTGATAATATGAATGGACG 60.572 40.741 0.00 0.00 30.70 4.79
37 38 7.571983 CGCTCCACTTTGATAATATGAATGGAC 60.572 40.741 0.00 0.00 30.70 4.02
38 39 6.427853 CGCTCCACTTTGATAATATGAATGGA 59.572 38.462 0.00 0.00 32.88 3.41
39 40 6.348786 CCGCTCCACTTTGATAATATGAATGG 60.349 42.308 0.00 0.00 0.00 3.16
40 41 6.427853 TCCGCTCCACTTTGATAATATGAATG 59.572 38.462 0.00 0.00 0.00 2.67
41 42 6.428159 GTCCGCTCCACTTTGATAATATGAAT 59.572 38.462 0.00 0.00 0.00 2.57
42 43 5.758296 GTCCGCTCCACTTTGATAATATGAA 59.242 40.000 0.00 0.00 0.00 2.57
43 44 5.297547 GTCCGCTCCACTTTGATAATATGA 58.702 41.667 0.00 0.00 0.00 2.15
44 45 4.150627 CGTCCGCTCCACTTTGATAATATG 59.849 45.833 0.00 0.00 0.00 1.78
45 46 4.307432 CGTCCGCTCCACTTTGATAATAT 58.693 43.478 0.00 0.00 0.00 1.28
46 47 3.491964 CCGTCCGCTCCACTTTGATAATA 60.492 47.826 0.00 0.00 0.00 0.98
47 48 2.550978 CGTCCGCTCCACTTTGATAAT 58.449 47.619 0.00 0.00 0.00 1.28
48 49 1.404986 CCGTCCGCTCCACTTTGATAA 60.405 52.381 0.00 0.00 0.00 1.75
49 50 0.174845 CCGTCCGCTCCACTTTGATA 59.825 55.000 0.00 0.00 0.00 2.15
50 51 1.079127 CCGTCCGCTCCACTTTGAT 60.079 57.895 0.00 0.00 0.00 2.57
51 52 2.342279 CCGTCCGCTCCACTTTGA 59.658 61.111 0.00 0.00 0.00 2.69
52 53 3.423154 GCCGTCCGCTCCACTTTG 61.423 66.667 0.00 0.00 0.00 2.77
53 54 3.469863 TTGCCGTCCGCTCCACTTT 62.470 57.895 0.00 0.00 38.78 2.66
54 55 3.883744 CTTGCCGTCCGCTCCACTT 62.884 63.158 0.00 0.00 38.78 3.16
55 56 4.379243 CTTGCCGTCCGCTCCACT 62.379 66.667 0.00 0.00 38.78 4.00
56 57 3.665675 ATCTTGCCGTCCGCTCCAC 62.666 63.158 0.00 0.00 38.78 4.02
57 58 2.954684 AATCTTGCCGTCCGCTCCA 61.955 57.895 0.00 0.00 38.78 3.86
58 59 2.125106 AATCTTGCCGTCCGCTCC 60.125 61.111 0.00 0.00 38.78 4.70
59 60 1.447838 TCAATCTTGCCGTCCGCTC 60.448 57.895 0.00 0.00 38.78 5.03
60 61 1.741770 GTCAATCTTGCCGTCCGCT 60.742 57.895 0.00 0.00 38.78 5.52
61 62 1.369091 ATGTCAATCTTGCCGTCCGC 61.369 55.000 0.00 0.00 38.31 5.54
62 63 0.652592 GATGTCAATCTTGCCGTCCG 59.347 55.000 0.00 0.00 0.00 4.79
63 64 0.652592 CGATGTCAATCTTGCCGTCC 59.347 55.000 0.00 0.00 0.00 4.79
64 65 1.061131 CACGATGTCAATCTTGCCGTC 59.939 52.381 0.00 0.00 0.00 4.79
65 66 1.078709 CACGATGTCAATCTTGCCGT 58.921 50.000 0.00 0.00 0.00 5.68
66 67 0.247814 GCACGATGTCAATCTTGCCG 60.248 55.000 6.03 0.00 46.93 5.69
67 68 3.611433 GCACGATGTCAATCTTGCC 57.389 52.632 6.03 0.00 46.93 4.52
69 70 1.736126 AGCTGCACGATGTCAATCTTG 59.264 47.619 1.02 0.00 35.64 3.02
70 71 1.736126 CAGCTGCACGATGTCAATCTT 59.264 47.619 0.00 0.00 0.00 2.40
71 72 1.338484 ACAGCTGCACGATGTCAATCT 60.338 47.619 15.27 0.00 37.86 2.40
72 73 1.081892 ACAGCTGCACGATGTCAATC 58.918 50.000 15.27 0.00 37.86 2.67
73 74 3.238232 ACAGCTGCACGATGTCAAT 57.762 47.368 15.27 0.00 37.86 2.57
74 75 4.777384 ACAGCTGCACGATGTCAA 57.223 50.000 15.27 0.00 37.86 3.18
77 78 2.023771 CACGACAGCTGCACGATGT 61.024 57.895 30.57 13.14 46.62 3.06
78 79 2.774126 CACGACAGCTGCACGATG 59.226 61.111 30.57 22.23 34.52 3.84
79 80 3.114616 GCACGACAGCTGCACGAT 61.115 61.111 30.57 17.14 34.56 3.73
80 81 4.583866 TGCACGACAGCTGCACGA 62.584 61.111 30.57 13.14 39.76 4.35
84 85 1.524355 CACTATATGCACGACAGCTGC 59.476 52.381 15.27 5.81 34.99 5.25
96 97 5.696822 ACTATACCAACGACGCACTATATG 58.303 41.667 0.00 0.00 0.00 1.78
97 98 5.954296 ACTATACCAACGACGCACTATAT 57.046 39.130 0.00 0.00 0.00 0.86
98 99 5.991606 ACTACTATACCAACGACGCACTATA 59.008 40.000 0.00 0.00 0.00 1.31
99 100 4.818546 ACTACTATACCAACGACGCACTAT 59.181 41.667 0.00 0.00 0.00 2.12
100 101 4.191544 ACTACTATACCAACGACGCACTA 58.808 43.478 0.00 0.00 0.00 2.74
101 102 3.012518 ACTACTATACCAACGACGCACT 58.987 45.455 0.00 0.00 0.00 4.40
102 103 3.411415 ACTACTATACCAACGACGCAC 57.589 47.619 0.00 0.00 0.00 5.34
103 104 4.414852 GAAACTACTATACCAACGACGCA 58.585 43.478 0.00 0.00 0.00 5.24
104 105 3.479949 CGAAACTACTATACCAACGACGC 59.520 47.826 0.00 0.00 0.00 5.19
105 106 4.897224 TCGAAACTACTATACCAACGACG 58.103 43.478 0.00 0.00 0.00 5.12
106 107 7.746526 AAATCGAAACTACTATACCAACGAC 57.253 36.000 0.00 0.00 0.00 4.34
107 108 8.761575 AAAAATCGAAACTACTATACCAACGA 57.238 30.769 0.00 0.00 0.00 3.85
130 131 4.468153 AGCCAAAGTCAACCTTACCAAAAA 59.532 37.500 0.00 0.00 31.48 1.94
131 132 4.027437 AGCCAAAGTCAACCTTACCAAAA 58.973 39.130 0.00 0.00 31.48 2.44
132 133 3.634910 GAGCCAAAGTCAACCTTACCAAA 59.365 43.478 0.00 0.00 31.48 3.28
133 134 3.219281 GAGCCAAAGTCAACCTTACCAA 58.781 45.455 0.00 0.00 31.48 3.67
134 135 2.173782 TGAGCCAAAGTCAACCTTACCA 59.826 45.455 0.00 0.00 31.48 3.25
135 136 2.858745 TGAGCCAAAGTCAACCTTACC 58.141 47.619 0.00 0.00 31.48 2.85
136 137 4.860072 CTTTGAGCCAAAGTCAACCTTAC 58.140 43.478 15.52 0.00 43.85 2.34
151 152 0.733909 GGATGCGTTTGGCTTTGAGC 60.734 55.000 0.00 0.00 44.05 4.26
152 153 0.454957 CGGATGCGTTTGGCTTTGAG 60.455 55.000 0.00 0.00 44.05 3.02
153 154 0.886938 TCGGATGCGTTTGGCTTTGA 60.887 50.000 6.49 0.00 44.05 2.69
154 155 0.039617 TTCGGATGCGTTTGGCTTTG 60.040 50.000 6.49 0.00 44.05 2.77
155 156 0.887933 ATTCGGATGCGTTTGGCTTT 59.112 45.000 6.49 0.00 44.05 3.51
156 157 1.745232 TATTCGGATGCGTTTGGCTT 58.255 45.000 6.49 0.00 44.05 4.35
157 158 1.745232 TTATTCGGATGCGTTTGGCT 58.255 45.000 6.49 0.00 44.05 4.75
158 159 2.384382 CATTATTCGGATGCGTTTGGC 58.616 47.619 6.49 0.00 43.96 4.52
159 160 2.384382 GCATTATTCGGATGCGTTTGG 58.616 47.619 6.49 0.00 40.30 3.28
170 171 4.271590 TGTTCCGATTGTGCATTATTCG 57.728 40.909 0.00 0.40 0.00 3.34
171 172 4.977963 CCATGTTCCGATTGTGCATTATTC 59.022 41.667 0.00 0.00 0.00 1.75
172 173 4.644234 TCCATGTTCCGATTGTGCATTATT 59.356 37.500 0.00 0.00 0.00 1.40
173 174 4.036734 GTCCATGTTCCGATTGTGCATTAT 59.963 41.667 0.00 0.00 0.00 1.28
174 175 3.376859 GTCCATGTTCCGATTGTGCATTA 59.623 43.478 0.00 0.00 0.00 1.90
175 176 2.164219 GTCCATGTTCCGATTGTGCATT 59.836 45.455 0.00 0.00 0.00 3.56
176 177 1.745087 GTCCATGTTCCGATTGTGCAT 59.255 47.619 0.00 0.00 0.00 3.96
177 178 1.164411 GTCCATGTTCCGATTGTGCA 58.836 50.000 0.00 0.00 0.00 4.57
178 179 0.451783 GGTCCATGTTCCGATTGTGC 59.548 55.000 0.00 0.00 0.00 4.57
179 180 1.739466 CAGGTCCATGTTCCGATTGTG 59.261 52.381 0.00 0.00 0.00 3.33
180 181 1.950484 GCAGGTCCATGTTCCGATTGT 60.950 52.381 0.00 0.00 0.00 2.71
181 182 0.734889 GCAGGTCCATGTTCCGATTG 59.265 55.000 0.00 0.00 0.00 2.67
182 183 0.327924 TGCAGGTCCATGTTCCGATT 59.672 50.000 0.00 0.00 0.00 3.34
183 184 0.548031 ATGCAGGTCCATGTTCCGAT 59.452 50.000 0.00 0.00 0.00 4.18
184 185 0.392863 CATGCAGGTCCATGTTCCGA 60.393 55.000 0.00 0.00 38.19 4.55
185 186 0.392863 TCATGCAGGTCCATGTTCCG 60.393 55.000 0.00 0.00 42.44 4.30
186 187 1.474077 GTTCATGCAGGTCCATGTTCC 59.526 52.381 0.00 0.00 42.44 3.62
187 188 2.161855 TGTTCATGCAGGTCCATGTTC 58.838 47.619 0.00 0.00 42.44 3.18
188 189 2.165167 CTGTTCATGCAGGTCCATGTT 58.835 47.619 0.00 0.00 42.44 2.71
189 190 1.830279 CTGTTCATGCAGGTCCATGT 58.170 50.000 0.00 0.00 42.44 3.21
190 191 0.454600 GCTGTTCATGCAGGTCCATG 59.545 55.000 0.00 0.00 43.04 3.66
191 192 0.038599 TGCTGTTCATGCAGGTCCAT 59.961 50.000 0.00 0.00 37.00 3.41
192 193 1.455412 TGCTGTTCATGCAGGTCCA 59.545 52.632 0.00 0.00 37.00 4.02
193 194 4.402851 TGCTGTTCATGCAGGTCC 57.597 55.556 0.00 0.00 37.00 4.46
198 199 4.092652 CGCGCTGCTGTTCATGCA 62.093 61.111 5.56 0.00 38.81 3.96
200 201 4.824166 GGCGCGCTGCTGTTCATG 62.824 66.667 32.29 0.00 45.43 3.07
213 214 4.090057 GACAAGTTGCCTCGGCGC 62.090 66.667 0.00 0.00 45.51 6.53
214 215 2.357517 AGACAAGTTGCCTCGGCG 60.358 61.111 0.00 0.00 45.51 6.46
215 216 2.035442 GGAGACAAGTTGCCTCGGC 61.035 63.158 12.37 0.00 42.35 5.54
216 217 0.035458 AAGGAGACAAGTTGCCTCGG 59.965 55.000 12.37 0.00 0.00 4.63
217 218 2.743636 TAAGGAGACAAGTTGCCTCG 57.256 50.000 12.37 0.00 0.00 4.63
218 219 3.935828 GACATAAGGAGACAAGTTGCCTC 59.064 47.826 10.49 10.49 0.00 4.70
219 220 3.327757 TGACATAAGGAGACAAGTTGCCT 59.672 43.478 1.81 0.00 0.00 4.75
220 221 3.437049 GTGACATAAGGAGACAAGTTGCC 59.563 47.826 1.81 0.00 0.00 4.52
221 222 4.319177 AGTGACATAAGGAGACAAGTTGC 58.681 43.478 1.81 0.00 0.00 4.17
222 223 6.102663 CCTAGTGACATAAGGAGACAAGTTG 58.897 44.000 0.00 0.00 31.64 3.16
223 224 5.780793 ACCTAGTGACATAAGGAGACAAGTT 59.219 40.000 11.83 0.00 34.34 2.66
224 225 5.334421 ACCTAGTGACATAAGGAGACAAGT 58.666 41.667 11.83 0.00 34.34 3.16
225 226 5.923733 ACCTAGTGACATAAGGAGACAAG 57.076 43.478 11.83 0.00 34.34 3.16
226 227 7.201794 CGATAACCTAGTGACATAAGGAGACAA 60.202 40.741 11.83 0.00 34.34 3.18
227 228 6.262496 CGATAACCTAGTGACATAAGGAGACA 59.738 42.308 11.83 0.00 34.34 3.41
228 229 6.670233 CGATAACCTAGTGACATAAGGAGAC 58.330 44.000 11.83 2.16 34.34 3.36
229 230 5.241064 GCGATAACCTAGTGACATAAGGAGA 59.759 44.000 11.83 1.64 34.34 3.71
230 231 5.241949 AGCGATAACCTAGTGACATAAGGAG 59.758 44.000 11.83 1.66 34.34 3.69
231 232 5.138276 AGCGATAACCTAGTGACATAAGGA 58.862 41.667 11.83 0.00 34.34 3.36
232 233 5.455056 AGCGATAACCTAGTGACATAAGG 57.545 43.478 4.85 4.85 36.42 2.69
233 234 7.085116 CCTTAGCGATAACCTAGTGACATAAG 58.915 42.308 0.00 0.00 0.00 1.73
234 235 6.516194 GCCTTAGCGATAACCTAGTGACATAA 60.516 42.308 0.00 0.00 0.00 1.90
235 236 5.048224 GCCTTAGCGATAACCTAGTGACATA 60.048 44.000 0.00 0.00 0.00 2.29
236 237 4.262079 GCCTTAGCGATAACCTAGTGACAT 60.262 45.833 0.00 0.00 0.00 3.06
237 238 3.067742 GCCTTAGCGATAACCTAGTGACA 59.932 47.826 0.00 0.00 0.00 3.58
238 239 3.318557 AGCCTTAGCGATAACCTAGTGAC 59.681 47.826 0.00 0.00 46.67 3.67
239 240 3.563223 AGCCTTAGCGATAACCTAGTGA 58.437 45.455 0.00 0.00 46.67 3.41
240 241 4.519730 ACTAGCCTTAGCGATAACCTAGTG 59.480 45.833 19.91 5.34 46.67 2.74
241 242 4.727677 ACTAGCCTTAGCGATAACCTAGT 58.272 43.478 17.02 17.02 46.67 2.57
242 243 4.760715 TGACTAGCCTTAGCGATAACCTAG 59.239 45.833 16.11 16.11 46.67 3.02
243 244 4.722220 TGACTAGCCTTAGCGATAACCTA 58.278 43.478 0.00 0.00 46.67 3.08
244 245 3.563223 TGACTAGCCTTAGCGATAACCT 58.437 45.455 0.00 0.00 46.67 3.50
245 246 4.522722 ATGACTAGCCTTAGCGATAACC 57.477 45.455 0.00 0.00 46.67 2.85
246 247 6.072618 TCACTATGACTAGCCTTAGCGATAAC 60.073 42.308 0.00 0.00 46.67 1.89
247 248 6.002082 TCACTATGACTAGCCTTAGCGATAA 58.998 40.000 0.00 0.00 46.67 1.75
248 249 5.557866 TCACTATGACTAGCCTTAGCGATA 58.442 41.667 0.00 0.00 46.67 2.92
249 250 4.399219 TCACTATGACTAGCCTTAGCGAT 58.601 43.478 0.00 0.00 46.67 4.58
250 251 3.815962 CTCACTATGACTAGCCTTAGCGA 59.184 47.826 0.00 0.00 46.67 4.93
251 252 3.815962 TCTCACTATGACTAGCCTTAGCG 59.184 47.826 0.00 0.00 46.67 4.26
252 253 4.825085 ACTCTCACTATGACTAGCCTTAGC 59.175 45.833 0.00 0.00 40.32 3.09
253 254 7.717875 AGTTACTCTCACTATGACTAGCCTTAG 59.282 40.741 0.00 0.00 0.00 2.18
254 255 7.575505 AGTTACTCTCACTATGACTAGCCTTA 58.424 38.462 0.00 0.00 0.00 2.69
255 256 6.428295 AGTTACTCTCACTATGACTAGCCTT 58.572 40.000 0.00 0.00 0.00 4.35
256 257 6.008696 AGTTACTCTCACTATGACTAGCCT 57.991 41.667 0.00 0.00 0.00 4.58
257 258 6.702716 AAGTTACTCTCACTATGACTAGCC 57.297 41.667 0.00 0.00 0.00 3.93
258 259 8.441312 ACTAAGTTACTCTCACTATGACTAGC 57.559 38.462 0.00 0.00 0.00 3.42
261 262 9.962809 ACTTACTAAGTTACTCTCACTATGACT 57.037 33.333 0.00 0.00 39.04 3.41
273 274 9.890352 GTGCGCTATATTACTTACTAAGTTACT 57.110 33.333 9.73 0.00 42.81 2.24
274 275 9.890352 AGTGCGCTATATTACTTACTAAGTTAC 57.110 33.333 9.73 0.00 42.81 2.50
276 277 9.460906 GAAGTGCGCTATATTACTTACTAAGTT 57.539 33.333 9.73 0.00 42.81 2.66
277 278 7.802251 CGAAGTGCGCTATATTACTTACTAAGT 59.198 37.037 9.73 6.68 45.40 2.24
278 279 8.013947 TCGAAGTGCGCTATATTACTTACTAAG 58.986 37.037 9.73 0.00 40.61 2.18
279 280 7.864686 TCGAAGTGCGCTATATTACTTACTAA 58.135 34.615 9.73 0.00 40.61 2.24
280 281 7.386025 TCTCGAAGTGCGCTATATTACTTACTA 59.614 37.037 9.73 0.00 40.61 1.82
281 282 6.204301 TCTCGAAGTGCGCTATATTACTTACT 59.796 38.462 9.73 0.00 40.61 2.24
282 283 6.369005 TCTCGAAGTGCGCTATATTACTTAC 58.631 40.000 9.73 2.73 40.61 2.34
283 284 6.549912 TCTCGAAGTGCGCTATATTACTTA 57.450 37.500 9.73 0.00 40.61 2.24
284 285 5.434352 TCTCGAAGTGCGCTATATTACTT 57.566 39.130 9.73 8.79 40.61 2.24
285 286 5.434352 TTCTCGAAGTGCGCTATATTACT 57.566 39.130 9.73 0.00 40.61 2.24
286 287 6.692232 ATTTCTCGAAGTGCGCTATATTAC 57.308 37.500 9.73 0.00 40.61 1.89
287 288 7.709269 AAATTTCTCGAAGTGCGCTATATTA 57.291 32.000 9.73 0.00 40.61 0.98
288 289 6.604735 AAATTTCTCGAAGTGCGCTATATT 57.395 33.333 9.73 0.00 40.61 1.28
289 290 6.604735 AAAATTTCTCGAAGTGCGCTATAT 57.395 33.333 9.73 0.00 40.61 0.86
290 291 6.247903 CAAAAATTTCTCGAAGTGCGCTATA 58.752 36.000 9.73 0.00 40.61 1.31
291 292 4.946784 AAAATTTCTCGAAGTGCGCTAT 57.053 36.364 9.73 0.00 40.61 2.97
292 293 4.463209 CAAAAATTTCTCGAAGTGCGCTA 58.537 39.130 9.73 0.00 40.61 4.26
293 294 3.300009 CAAAAATTTCTCGAAGTGCGCT 58.700 40.909 9.73 0.00 40.61 5.92
294 295 2.160104 GCAAAAATTTCTCGAAGTGCGC 60.160 45.455 0.00 0.00 40.61 6.09
295 296 3.300009 AGCAAAAATTTCTCGAAGTGCG 58.700 40.909 0.00 0.00 42.69 5.34
296 297 6.363357 ACATAAGCAAAAATTTCTCGAAGTGC 59.637 34.615 0.00 0.00 0.00 4.40
297 298 7.591057 TCACATAAGCAAAAATTTCTCGAAGTG 59.409 33.333 0.00 0.00 0.00 3.16
298 299 7.591426 GTCACATAAGCAAAAATTTCTCGAAGT 59.409 33.333 0.00 0.00 0.00 3.01
299 300 7.591057 TGTCACATAAGCAAAAATTTCTCGAAG 59.409 33.333 0.00 0.00 0.00 3.79
300 301 7.421599 TGTCACATAAGCAAAAATTTCTCGAA 58.578 30.769 0.00 0.00 0.00 3.71
301 302 6.964908 TGTCACATAAGCAAAAATTTCTCGA 58.035 32.000 0.00 0.00 0.00 4.04
302 303 7.326789 ACATGTCACATAAGCAAAAATTTCTCG 59.673 33.333 0.00 0.00 0.00 4.04
303 304 8.524870 ACATGTCACATAAGCAAAAATTTCTC 57.475 30.769 0.00 0.00 0.00 2.87
304 305 9.630098 CTACATGTCACATAAGCAAAAATTTCT 57.370 29.630 0.00 0.00 0.00 2.52
305 306 9.410556 ACTACATGTCACATAAGCAAAAATTTC 57.589 29.630 0.00 0.00 0.00 2.17
306 307 9.762933 AACTACATGTCACATAAGCAAAAATTT 57.237 25.926 0.00 0.00 0.00 1.82
310 311 9.838975 CATTAACTACATGTCACATAAGCAAAA 57.161 29.630 0.00 0.00 0.00 2.44
311 312 9.225436 TCATTAACTACATGTCACATAAGCAAA 57.775 29.630 0.00 0.00 0.00 3.68
312 313 8.785329 TCATTAACTACATGTCACATAAGCAA 57.215 30.769 0.00 0.00 0.00 3.91
313 314 8.257306 TCTCATTAACTACATGTCACATAAGCA 58.743 33.333 0.00 0.00 0.00 3.91
314 315 8.648557 TCTCATTAACTACATGTCACATAAGC 57.351 34.615 0.00 0.00 0.00 3.09
317 318 9.586435 CACTTCTCATTAACTACATGTCACATA 57.414 33.333 0.00 0.00 0.00 2.29
318 319 7.550551 CCACTTCTCATTAACTACATGTCACAT 59.449 37.037 0.00 0.00 0.00 3.21
319 320 6.873605 CCACTTCTCATTAACTACATGTCACA 59.126 38.462 0.00 0.00 0.00 3.58
320 321 6.874134 ACCACTTCTCATTAACTACATGTCAC 59.126 38.462 0.00 0.00 0.00 3.67
321 322 7.004555 ACCACTTCTCATTAACTACATGTCA 57.995 36.000 0.00 0.00 0.00 3.58
322 323 8.870879 GTTACCACTTCTCATTAACTACATGTC 58.129 37.037 0.00 0.00 0.00 3.06
323 324 8.372459 TGTTACCACTTCTCATTAACTACATGT 58.628 33.333 2.69 2.69 0.00 3.21
324 325 8.771920 TGTTACCACTTCTCATTAACTACATG 57.228 34.615 0.00 0.00 0.00 3.21
356 357 9.543018 GTCTTGAAAATGCTATGTTACAGTAAC 57.457 33.333 15.58 15.58 39.11 2.50
357 358 9.278978 TGTCTTGAAAATGCTATGTTACAGTAA 57.721 29.630 0.00 0.00 0.00 2.24
358 359 8.840833 TGTCTTGAAAATGCTATGTTACAGTA 57.159 30.769 0.00 0.00 0.00 2.74
359 360 7.744087 TGTCTTGAAAATGCTATGTTACAGT 57.256 32.000 0.00 0.00 0.00 3.55
360 361 8.506437 TCTTGTCTTGAAAATGCTATGTTACAG 58.494 33.333 0.00 0.00 0.00 2.74
361 362 8.389779 TCTTGTCTTGAAAATGCTATGTTACA 57.610 30.769 0.00 0.00 0.00 2.41
362 363 9.282247 CATCTTGTCTTGAAAATGCTATGTTAC 57.718 33.333 0.00 0.00 0.00 2.50
363 364 9.230122 TCATCTTGTCTTGAAAATGCTATGTTA 57.770 29.630 0.00 0.00 0.00 2.41
364 365 8.114331 TCATCTTGTCTTGAAAATGCTATGTT 57.886 30.769 0.00 0.00 0.00 2.71
365 366 7.392673 ACTCATCTTGTCTTGAAAATGCTATGT 59.607 33.333 0.00 0.00 0.00 2.29
366 367 7.759465 ACTCATCTTGTCTTGAAAATGCTATG 58.241 34.615 0.00 0.00 0.00 2.23
367 368 7.828223 AGACTCATCTTGTCTTGAAAATGCTAT 59.172 33.333 0.00 0.00 41.45 2.97
368 369 7.164122 AGACTCATCTTGTCTTGAAAATGCTA 58.836 34.615 0.00 0.00 41.45 3.49
369 370 6.002704 AGACTCATCTTGTCTTGAAAATGCT 58.997 36.000 0.00 0.00 41.45 3.79
370 371 6.251655 AGACTCATCTTGTCTTGAAAATGC 57.748 37.500 0.00 0.00 41.45 3.56
371 372 8.315391 TGTAGACTCATCTTGTCTTGAAAATG 57.685 34.615 1.67 0.00 41.45 2.32
372 373 8.908786 TTGTAGACTCATCTTGTCTTGAAAAT 57.091 30.769 1.67 0.00 41.45 1.82
373 374 7.041780 GCTTGTAGACTCATCTTGTCTTGAAAA 60.042 37.037 1.67 0.00 41.45 2.29
374 375 6.425114 GCTTGTAGACTCATCTTGTCTTGAAA 59.575 38.462 1.67 0.00 41.45 2.69
375 376 5.928839 GCTTGTAGACTCATCTTGTCTTGAA 59.071 40.000 1.67 0.00 41.45 2.69
376 377 5.244851 AGCTTGTAGACTCATCTTGTCTTGA 59.755 40.000 1.67 0.00 41.45 3.02
377 378 5.477510 AGCTTGTAGACTCATCTTGTCTTG 58.522 41.667 1.67 0.00 41.45 3.02
378 379 5.736951 AGCTTGTAGACTCATCTTGTCTT 57.263 39.130 1.67 0.00 41.45 3.01
379 380 6.842437 TTAGCTTGTAGACTCATCTTGTCT 57.158 37.500 0.00 0.00 45.48 3.41
380 381 9.587772 TTAATTAGCTTGTAGACTCATCTTGTC 57.412 33.333 0.00 0.00 36.29 3.18
387 388 9.587772 GACTTCATTAATTAGCTTGTAGACTCA 57.412 33.333 0.00 0.00 0.00 3.41
388 389 9.036671 GGACTTCATTAATTAGCTTGTAGACTC 57.963 37.037 0.00 0.00 0.00 3.36
389 390 8.763601 AGGACTTCATTAATTAGCTTGTAGACT 58.236 33.333 0.00 0.00 0.00 3.24
390 391 8.950208 AGGACTTCATTAATTAGCTTGTAGAC 57.050 34.615 0.00 0.00 0.00 2.59
391 392 8.982723 AGAGGACTTCATTAATTAGCTTGTAGA 58.017 33.333 0.00 0.00 0.00 2.59
394 395 9.553064 CATAGAGGACTTCATTAATTAGCTTGT 57.447 33.333 0.00 0.00 0.00 3.16
395 396 9.770097 TCATAGAGGACTTCATTAATTAGCTTG 57.230 33.333 0.00 0.00 0.00 4.01
441 442 9.409918 AGTCTAAGTTACTATCTTCATAGTGCA 57.590 33.333 5.12 0.00 44.33 4.57
476 477 8.361139 GGAGTAACTTATACTAGTGTCATGCAT 58.639 37.037 5.39 0.00 0.00 3.96
477 478 7.201884 GGGAGTAACTTATACTAGTGTCATGCA 60.202 40.741 5.39 0.00 0.00 3.96
478 479 7.146648 GGGAGTAACTTATACTAGTGTCATGC 58.853 42.308 5.39 0.00 0.00 4.06
479 480 7.287005 TGGGGAGTAACTTATACTAGTGTCATG 59.713 40.741 5.39 0.00 0.00 3.07
480 481 7.287235 GTGGGGAGTAACTTATACTAGTGTCAT 59.713 40.741 5.39 0.00 0.00 3.06
481 482 6.604795 GTGGGGAGTAACTTATACTAGTGTCA 59.395 42.308 5.39 0.00 0.00 3.58
482 483 6.832900 AGTGGGGAGTAACTTATACTAGTGTC 59.167 42.308 5.39 0.00 0.00 3.67
483 484 6.739664 AGTGGGGAGTAACTTATACTAGTGT 58.260 40.000 5.39 0.39 0.00 3.55
484 485 8.794553 CATAGTGGGGAGTAACTTATACTAGTG 58.205 40.741 5.39 0.00 0.00 2.74
485 486 8.730948 TCATAGTGGGGAGTAACTTATACTAGT 58.269 37.037 0.00 0.00 0.00 2.57
486 487 9.012161 GTCATAGTGGGGAGTAACTTATACTAG 57.988 40.741 0.00 0.00 0.00 2.57
487 488 7.946776 GGTCATAGTGGGGAGTAACTTATACTA 59.053 40.741 0.00 0.00 0.00 1.82
488 489 6.781507 GGTCATAGTGGGGAGTAACTTATACT 59.218 42.308 0.00 0.00 0.00 2.12
489 490 6.552350 TGGTCATAGTGGGGAGTAACTTATAC 59.448 42.308 0.00 0.00 0.00 1.47
490 491 6.685541 TGGTCATAGTGGGGAGTAACTTATA 58.314 40.000 0.00 0.00 0.00 0.98
491 492 5.535029 TGGTCATAGTGGGGAGTAACTTAT 58.465 41.667 0.00 0.00 0.00 1.73
492 493 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
493 494 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
494 495 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
495 496 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
496 497 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
497 498 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
498 499 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
499 500 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
500 501 0.639943 TAGGCTGGTCATAGTGGGGA 59.360 55.000 0.00 0.00 0.00 4.81
501 502 1.507140 TTAGGCTGGTCATAGTGGGG 58.493 55.000 0.00 0.00 0.00 4.96
502 503 2.705658 TCATTAGGCTGGTCATAGTGGG 59.294 50.000 0.00 0.00 0.00 4.61
503 504 3.733337 GTCATTAGGCTGGTCATAGTGG 58.267 50.000 0.00 0.00 0.00 4.00
504 505 3.384668 CGTCATTAGGCTGGTCATAGTG 58.615 50.000 0.00 0.00 0.00 2.74
505 506 2.224066 GCGTCATTAGGCTGGTCATAGT 60.224 50.000 0.00 0.00 33.67 2.12
506 507 2.408050 GCGTCATTAGGCTGGTCATAG 58.592 52.381 0.00 0.00 33.67 2.23
507 508 1.269569 CGCGTCATTAGGCTGGTCATA 60.270 52.381 0.00 0.00 34.30 2.15
508 509 0.530650 CGCGTCATTAGGCTGGTCAT 60.531 55.000 0.00 0.00 34.30 3.06
509 510 1.153647 CGCGTCATTAGGCTGGTCA 60.154 57.895 0.00 0.00 34.30 4.02
510 511 1.883084 CCGCGTCATTAGGCTGGTC 60.883 63.158 4.92 0.00 34.30 4.02
511 512 1.324740 TACCGCGTCATTAGGCTGGT 61.325 55.000 4.92 11.05 42.13 4.00
512 513 0.033504 ATACCGCGTCATTAGGCTGG 59.966 55.000 4.92 0.00 36.72 4.85
513 514 1.419374 GATACCGCGTCATTAGGCTG 58.581 55.000 4.92 0.00 34.30 4.85
514 515 0.317479 GGATACCGCGTCATTAGGCT 59.683 55.000 4.92 0.00 34.30 4.58
515 516 1.007336 CGGATACCGCGTCATTAGGC 61.007 60.000 4.92 0.00 41.17 3.93
516 517 3.102515 CGGATACCGCGTCATTAGG 57.897 57.895 4.92 0.00 41.17 2.69
517 518 1.266175 ACTCGGATACCGCGTCATTAG 59.734 52.381 4.92 0.00 41.24 1.73
518 519 1.311859 ACTCGGATACCGCGTCATTA 58.688 50.000 4.92 0.00 41.24 1.90
519 520 0.458669 AACTCGGATACCGCGTCATT 59.541 50.000 4.92 0.00 44.43 2.57
520 521 0.458669 AAACTCGGATACCGCGTCAT 59.541 50.000 4.92 0.00 44.43 3.06
521 522 0.244450 AAAACTCGGATACCGCGTCA 59.756 50.000 4.92 0.00 44.43 4.35
522 523 2.193306 TAAAACTCGGATACCGCGTC 57.807 50.000 4.92 0.00 44.43 5.19
527 528 7.492352 AACAGCATATTAAAACTCGGATACC 57.508 36.000 0.00 0.00 0.00 2.73
528 529 9.434559 GAAAACAGCATATTAAAACTCGGATAC 57.565 33.333 0.00 0.00 0.00 2.24
529 530 8.332464 CGAAAACAGCATATTAAAACTCGGATA 58.668 33.333 0.00 0.00 0.00 2.59
530 531 7.186804 CGAAAACAGCATATTAAAACTCGGAT 58.813 34.615 0.00 0.00 0.00 4.18
531 532 6.539324 CGAAAACAGCATATTAAAACTCGGA 58.461 36.000 0.00 0.00 0.00 4.55
532 533 5.227184 GCGAAAACAGCATATTAAAACTCGG 59.773 40.000 0.00 0.00 34.19 4.63
533 534 5.053932 CGCGAAAACAGCATATTAAAACTCG 60.054 40.000 0.00 0.00 34.19 4.18
534 535 5.793457 ACGCGAAAACAGCATATTAAAACTC 59.207 36.000 15.93 0.00 34.19 3.01
535 536 5.695818 ACGCGAAAACAGCATATTAAAACT 58.304 33.333 15.93 0.00 34.19 2.66
536 537 5.985526 ACGCGAAAACAGCATATTAAAAC 57.014 34.783 15.93 0.00 34.19 2.43
537 538 5.164138 GCAACGCGAAAACAGCATATTAAAA 60.164 36.000 15.93 0.00 34.19 1.52
538 539 4.322274 GCAACGCGAAAACAGCATATTAAA 59.678 37.500 15.93 0.00 34.19 1.52
539 540 3.849145 GCAACGCGAAAACAGCATATTAA 59.151 39.130 15.93 0.00 34.19 1.40
540 541 3.120165 TGCAACGCGAAAACAGCATATTA 60.120 39.130 15.93 0.00 34.19 0.98
541 542 2.250188 GCAACGCGAAAACAGCATATT 58.750 42.857 15.93 0.00 34.19 1.28
542 543 1.198867 TGCAACGCGAAAACAGCATAT 59.801 42.857 15.93 0.00 34.19 1.78
550 551 1.821336 CTTCAGTTGCAACGCGAAAA 58.179 45.000 26.79 16.63 0.00 2.29
610 616 1.910580 ATTGGATCACGGGCGAACCT 61.911 55.000 0.00 0.00 36.97 3.50
647 653 1.153939 CGAGAGGTGCTGACTTCGG 60.154 63.158 0.00 0.00 33.43 4.30
797 811 0.179202 TTGCGAATTTGCGATGGACG 60.179 50.000 13.01 0.00 45.66 4.79
798 812 1.259316 GTTGCGAATTTGCGATGGAC 58.741 50.000 10.92 2.26 37.81 4.02
799 813 0.179202 CGTTGCGAATTTGCGATGGA 60.179 50.000 16.77 0.00 37.81 3.41
800 814 0.454285 ACGTTGCGAATTTGCGATGG 60.454 50.000 24.97 16.10 39.20 3.51
803 817 1.724234 GCACGTTGCGAATTTGCGA 60.724 52.632 13.01 8.40 37.81 5.10
804 818 2.756340 GCACGTTGCGAATTTGCG 59.244 55.556 13.01 1.56 37.81 4.85
919 948 3.365265 GTTTGCTCCGGCTGGGTG 61.365 66.667 12.87 6.43 39.59 4.61
953 1012 0.389391 CGACCAAGATAGATGGCCGT 59.611 55.000 0.00 0.00 41.89 5.68
954 1013 3.201342 CGACCAAGATAGATGGCCG 57.799 57.895 0.00 0.00 41.89 6.13
955 1014 1.139058 ACACGACCAAGATAGATGGCC 59.861 52.381 0.00 0.00 41.89 5.36
956 1015 2.604046 ACACGACCAAGATAGATGGC 57.396 50.000 0.00 0.00 41.89 4.40
957 1016 3.865745 GTGAACACGACCAAGATAGATGG 59.134 47.826 0.00 0.00 43.84 3.51
959 1018 3.428999 CGGTGAACACGACCAAGATAGAT 60.429 47.826 0.00 0.00 32.45 1.98
967 1026 0.528901 CAAGACGGTGAACACGACCA 60.529 55.000 0.00 0.00 32.45 4.02
969 1028 2.222592 CCAAGACGGTGAACACGAC 58.777 57.895 0.00 0.00 34.93 4.34
979 1038 0.942410 TCTTTTCGCGACCAAGACGG 60.942 55.000 20.83 2.81 42.50 4.79
980 1039 0.856641 TTCTTTTCGCGACCAAGACG 59.143 50.000 23.31 4.56 0.00 4.18
981 1040 3.226347 CATTTCTTTTCGCGACCAAGAC 58.774 45.455 23.31 0.00 0.00 3.01
982 1041 2.225491 CCATTTCTTTTCGCGACCAAGA 59.775 45.455 20.83 20.83 0.00 3.02
983 1042 2.031157 ACCATTTCTTTTCGCGACCAAG 60.031 45.455 9.15 14.69 0.00 3.61
984 1043 1.950909 ACCATTTCTTTTCGCGACCAA 59.049 42.857 9.15 3.66 0.00 3.67
985 1044 1.265635 CACCATTTCTTTTCGCGACCA 59.734 47.619 9.15 0.00 0.00 4.02
986 1045 1.533731 TCACCATTTCTTTTCGCGACC 59.466 47.619 9.15 0.00 0.00 4.79
987 1046 2.223377 AGTCACCATTTCTTTTCGCGAC 59.777 45.455 9.15 0.00 0.00 5.19
988 1047 2.489971 AGTCACCATTTCTTTTCGCGA 58.510 42.857 3.71 3.71 0.00 5.87
989 1048 2.969443 AGTCACCATTTCTTTTCGCG 57.031 45.000 0.00 0.00 0.00 5.87
990 1049 4.083271 AGCTTAGTCACCATTTCTTTTCGC 60.083 41.667 0.00 0.00 0.00 4.70
991 1050 5.613358 AGCTTAGTCACCATTTCTTTTCG 57.387 39.130 0.00 0.00 0.00 3.46
992 1051 5.622378 CGAGCTTAGTCACCATTTCTTTTC 58.378 41.667 0.00 0.00 0.00 2.29
996 1055 2.028112 TGCGAGCTTAGTCACCATTTCT 60.028 45.455 0.00 0.00 0.00 2.52
997 1056 2.346803 TGCGAGCTTAGTCACCATTTC 58.653 47.619 0.00 0.00 0.00 2.17
999 1058 2.009042 GCTGCGAGCTTAGTCACCATT 61.009 52.381 0.00 0.00 38.45 3.16
1077 1139 2.670934 AGCCAGCCGTTGAAGCAG 60.671 61.111 0.00 0.00 0.00 4.24
1391 1489 5.453567 AAGTTGAGACACTTATTTTGGGC 57.546 39.130 0.00 0.00 35.10 5.36
1415 1513 3.292460 ACTCCCTCTCCGTCTCAATTAG 58.708 50.000 0.00 0.00 0.00 1.73
1418 1516 3.603965 ATACTCCCTCTCCGTCTCAAT 57.396 47.619 0.00 0.00 0.00 2.57
1420 1518 4.845225 AGTATATACTCCCTCTCCGTCTCA 59.155 45.833 9.71 0.00 0.00 3.27
1421 1519 5.046448 TCAGTATATACTCCCTCTCCGTCTC 60.046 48.000 12.62 0.00 33.46 3.36
1427 1937 5.317808 TGCAGTCAGTATATACTCCCTCTC 58.682 45.833 12.62 6.37 33.46 3.20
1444 1954 5.090652 TCTTCGTAAACAACAATGCAGTC 57.909 39.130 0.00 0.00 0.00 3.51
1471 1981 5.362717 AGACATCACCTCCGTAATGAACATA 59.637 40.000 0.00 0.00 0.00 2.29
1524 2040 1.153745 CTTGAGGAGGACGGAAGCG 60.154 63.158 0.00 0.00 0.00 4.68
1574 2090 0.821711 CTTGTTCGGGTTGCCTTCCA 60.822 55.000 0.00 0.00 0.00 3.53
1623 2139 4.408821 ATCTTCGCCTTGGCCGCA 62.409 61.111 6.02 0.00 0.00 5.69
1704 2220 0.179936 GGTTGCTGAGGATGGAGGAG 59.820 60.000 0.00 0.00 0.00 3.69
1780 2296 1.520342 GCAGCTGGTCGGTCTCATC 60.520 63.158 17.12 0.00 0.00 2.92
1832 2348 1.351076 CCCCTTGGCCTTGAAATTGT 58.649 50.000 3.32 0.00 0.00 2.71
1962 2478 3.177884 TTGCACTGGGCCCTGAGT 61.178 61.111 33.43 21.83 43.89 3.41
2019 2541 1.195115 AGCGCTTATCCAGGACTTCA 58.805 50.000 2.64 0.00 0.00 3.02
2055 2577 1.062880 GTGAACAACGCTTTTCCGTCA 59.937 47.619 0.00 0.00 41.16 4.35
2190 2712 1.152830 GGCTTTGGTCTTGACCCCA 59.847 57.895 16.23 1.46 0.00 4.96
2263 2801 6.071840 CCATGCATTCTACTAGGTACTCCTAC 60.072 46.154 0.00 0.00 44.58 3.18
2267 2805 5.509840 CCACCATGCATTCTACTAGGTACTC 60.510 48.000 0.00 0.00 41.75 2.59
2271 2811 3.115390 ACCACCATGCATTCTACTAGGT 58.885 45.455 0.00 0.00 0.00 3.08
2272 2812 3.845781 ACCACCATGCATTCTACTAGG 57.154 47.619 0.00 0.00 0.00 3.02
2273 2813 4.752101 GCTAACCACCATGCATTCTACTAG 59.248 45.833 0.00 0.00 0.00 2.57
2274 2814 4.408921 AGCTAACCACCATGCATTCTACTA 59.591 41.667 0.00 0.00 0.00 1.82
2275 2815 3.200825 AGCTAACCACCATGCATTCTACT 59.799 43.478 0.00 0.00 0.00 2.57
2276 2816 3.313526 CAGCTAACCACCATGCATTCTAC 59.686 47.826 0.00 0.00 0.00 2.59
2277 2817 3.544684 CAGCTAACCACCATGCATTCTA 58.455 45.455 0.00 0.00 0.00 2.10
2278 2818 2.372264 CAGCTAACCACCATGCATTCT 58.628 47.619 0.00 0.00 0.00 2.40
2279 2819 1.406539 CCAGCTAACCACCATGCATTC 59.593 52.381 0.00 0.00 0.00 2.67
2393 2937 9.224267 GATACATGTGGTATGCAATCTAAATCT 57.776 33.333 9.11 0.00 42.76 2.40
2395 2939 8.786898 GTGATACATGTGGTATGCAATCTAAAT 58.213 33.333 9.11 0.00 42.76 1.40
2396 2940 7.772757 TGTGATACATGTGGTATGCAATCTAAA 59.227 33.333 9.11 0.00 42.76 1.85
2397 2941 7.278875 TGTGATACATGTGGTATGCAATCTAA 58.721 34.615 9.11 0.00 42.76 2.10
2398 2942 6.825610 TGTGATACATGTGGTATGCAATCTA 58.174 36.000 9.11 0.00 42.76 1.98
2399 2943 5.683681 TGTGATACATGTGGTATGCAATCT 58.316 37.500 9.11 0.00 42.76 2.40
2400 2944 6.564709 ATGTGATACATGTGGTATGCAATC 57.435 37.500 9.11 1.17 42.76 2.67
2461 3005 9.634021 TGTAGAGTAGTAGTAGCAGTAGTAGTA 57.366 37.037 0.00 0.00 0.00 1.82
2462 3006 8.532186 TGTAGAGTAGTAGTAGCAGTAGTAGT 57.468 38.462 0.00 0.00 0.00 2.73
2463 3007 9.985730 AATGTAGAGTAGTAGTAGCAGTAGTAG 57.014 37.037 0.00 0.00 0.00 2.57
2465 3009 9.111613 CAAATGTAGAGTAGTAGTAGCAGTAGT 57.888 37.037 0.00 0.00 0.00 2.73
2466 3010 9.111613 ACAAATGTAGAGTAGTAGTAGCAGTAG 57.888 37.037 0.00 0.00 0.00 2.57
2467 3011 8.890718 CACAAATGTAGAGTAGTAGTAGCAGTA 58.109 37.037 0.00 0.00 0.00 2.74
2468 3012 7.393796 ACACAAATGTAGAGTAGTAGTAGCAGT 59.606 37.037 0.00 0.00 37.26 4.40
2469 3013 7.698550 CACACAAATGTAGAGTAGTAGTAGCAG 59.301 40.741 0.00 0.00 36.72 4.24
2470 3014 7.176165 ACACACAAATGTAGAGTAGTAGTAGCA 59.824 37.037 0.00 0.00 36.72 3.49
2471 3015 7.536855 ACACACAAATGTAGAGTAGTAGTAGC 58.463 38.462 0.00 0.00 36.72 3.58
2659 3210 8.764287 CGAAATTTCTTGAACTAAAGGCAAAAT 58.236 29.630 15.92 0.00 0.00 1.82
2755 3306 7.730364 ACTGATCAAGAAAAGTTTCGTACAT 57.270 32.000 0.00 0.00 41.92 2.29
2756 3307 7.384115 CCTACTGATCAAGAAAAGTTTCGTACA 59.616 37.037 0.00 0.00 41.92 2.90
2826 3377 7.851228 ACAATCTATCAACCATTCAGTACTCA 58.149 34.615 0.00 0.00 0.00 3.41
2960 3625 8.712285 TGTATTTCCTGTTATTTCGTTCTAGG 57.288 34.615 0.00 0.00 0.00 3.02
3026 3695 6.777526 TTTTATTGTAAACACATGGCTTGC 57.222 33.333 0.00 0.00 0.00 4.01
3071 3769 9.559958 CTATGTTAGCTTGTAAAAATGGTCTTG 57.440 33.333 0.00 0.00 0.00 3.02
3090 3788 7.695480 TTAGACCATTTTGCAAGCTATGTTA 57.305 32.000 0.00 0.00 0.00 2.41
3097 3795 9.329913 CGTATAATATTAGACCATTTTGCAAGC 57.670 33.333 13.28 0.00 0.00 4.01
3110 3808 7.341030 TCCATCCGTCCTCGTATAATATTAGA 58.659 38.462 1.02 0.00 35.01 2.10
3119 3817 2.158711 TGTACTCCATCCGTCCTCGTAT 60.159 50.000 0.00 0.00 35.01 3.06
3122 3820 1.001268 CATGTACTCCATCCGTCCTCG 60.001 57.143 0.00 0.00 0.00 4.63
3123 3821 2.307768 TCATGTACTCCATCCGTCCTC 58.692 52.381 0.00 0.00 0.00 3.71
3124 3822 2.454336 TCATGTACTCCATCCGTCCT 57.546 50.000 0.00 0.00 0.00 3.85
3125 3823 3.753294 AATCATGTACTCCATCCGTCC 57.247 47.619 0.00 0.00 0.00 4.79
3132 3830 3.431673 TGTGGCAAATCATGTACTCCA 57.568 42.857 0.00 0.00 0.00 3.86
3157 3855 5.659440 ATTAATTCCACGCTGAATGGTTT 57.341 34.783 1.23 0.00 38.47 3.27
3181 3879 9.406828 CAAGTAGTTTCCCTTAAAAGTTAATGC 57.593 33.333 0.00 0.00 0.00 3.56
3189 3887 5.652891 TGTGTGCAAGTAGTTTCCCTTAAAA 59.347 36.000 0.00 0.00 0.00 1.52
3190 3888 5.066764 GTGTGTGCAAGTAGTTTCCCTTAAA 59.933 40.000 0.00 0.00 0.00 1.52
3191 3889 4.577283 GTGTGTGCAAGTAGTTTCCCTTAA 59.423 41.667 0.00 0.00 0.00 1.85
3230 3931 7.975866 TTTGTCCGACGTATTACTTCTAATC 57.024 36.000 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.