Multiple sequence alignment - TraesCS7A01G473400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G473400 chr7A 100.000 2799 0 0 1 2799 669214140 669216938 0.000000e+00 5169
1 TraesCS7A01G473400 chr7A 92.785 1774 103 12 590 2340 669292786 669294557 0.000000e+00 2543
2 TraesCS7A01G473400 chr7A 90.603 564 38 8 1 558 669292231 669292785 0.000000e+00 734
3 TraesCS7A01G473400 chr7A 94.937 79 3 1 121 198 669328211 669328133 3.790000e-24 122
4 TraesCS7A01G473400 chr7A 90.789 76 7 0 55 130 669328300 669328225 4.930000e-18 102
5 TraesCS7A01G473400 chr7B 92.416 2057 101 13 31 2034 639925058 639927112 0.000000e+00 2883
6 TraesCS7A01G473400 chr7B 92.416 2057 101 13 31 2034 639944704 639946758 0.000000e+00 2883
7 TraesCS7A01G473400 chr7B 80.925 173 30 2 222 394 640259806 640259975 1.750000e-27 134
8 TraesCS7A01G473400 chr7D 93.047 1769 102 8 590 2340 577200585 577202350 0.000000e+00 2566
9 TraesCS7A01G473400 chr7D 91.409 582 24 5 1 558 577200005 577200584 0.000000e+00 774
10 TraesCS7A01G473400 chr3A 85.464 571 83 0 1231 1801 9556246 9556816 1.860000e-166 595
11 TraesCS7A01G473400 chr3A 80.072 833 141 22 990 1804 9572495 9571670 1.860000e-166 595
12 TraesCS7A01G473400 chr3A 83.538 571 94 0 1231 1801 9573496 9574066 4.100000e-148 534
13 TraesCS7A01G473400 chr3D 79.218 818 142 22 1000 1801 4045236 4044431 6.820000e-151 544
14 TraesCS7A01G473400 chr3D 83.363 571 95 0 1231 1801 4011143 4010573 1.910000e-146 529


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G473400 chr7A 669214140 669216938 2798 False 5169.0 5169 100.000 1 2799 1 chr7A.!!$F1 2798
1 TraesCS7A01G473400 chr7A 669292231 669294557 2326 False 1638.5 2543 91.694 1 2340 2 chr7A.!!$F2 2339
2 TraesCS7A01G473400 chr7B 639925058 639927112 2054 False 2883.0 2883 92.416 31 2034 1 chr7B.!!$F1 2003
3 TraesCS7A01G473400 chr7B 639944704 639946758 2054 False 2883.0 2883 92.416 31 2034 1 chr7B.!!$F2 2003
4 TraesCS7A01G473400 chr7D 577200005 577202350 2345 False 1670.0 2566 92.228 1 2340 2 chr7D.!!$F1 2339
5 TraesCS7A01G473400 chr3A 9556246 9556816 570 False 595.0 595 85.464 1231 1801 1 chr3A.!!$F1 570
6 TraesCS7A01G473400 chr3A 9571670 9572495 825 True 595.0 595 80.072 990 1804 1 chr3A.!!$R1 814
7 TraesCS7A01G473400 chr3A 9573496 9574066 570 False 534.0 534 83.538 1231 1801 1 chr3A.!!$F2 570
8 TraesCS7A01G473400 chr3D 4044431 4045236 805 True 544.0 544 79.218 1000 1801 1 chr3D.!!$R2 801
9 TraesCS7A01G473400 chr3D 4010573 4011143 570 True 529.0 529 83.363 1231 1801 1 chr3D.!!$R1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
871 928 0.515564 CCTGTTCGCAACCTTTACCG 59.484 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2098 2214 0.239879 TCCAAATGAAAAGTCGCCGC 59.76 50.0 0.0 0.0 0.0 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.932146 CTTGTGAAGGTTAACAAGGTTGG 58.068 43.478 10.99 0.00 46.17 3.77
27 28 3.949113 TGTGAAGGTTAACAAGGTTGGAC 59.051 43.478 8.10 0.00 0.00 4.02
29 30 5.104444 TGTGAAGGTTAACAAGGTTGGACTA 60.104 40.000 8.10 0.00 0.00 2.59
176 205 5.652891 AGACTCGGTCACATATAGACAACTT 59.347 40.000 9.05 0.00 37.74 2.66
321 354 2.483714 GCTCGGTATCTTCTTCCATGCA 60.484 50.000 0.00 0.00 0.00 3.96
352 385 2.623416 AGGTGATTGCATGCATGATGAG 59.377 45.455 30.64 3.47 33.31 2.90
367 400 6.204108 TGCATGATGAGAACTTATGCAGTATG 59.796 38.462 6.14 0.00 46.31 2.39
445 478 3.313526 CCATTTCCAATTACTCAGCTCCG 59.686 47.826 0.00 0.00 0.00 4.63
449 482 2.166459 TCCAATTACTCAGCTCCGACTG 59.834 50.000 0.00 0.00 39.12 3.51
466 499 3.425359 CGACTGATGACCAAGTCAATTGC 60.425 47.826 0.00 0.00 45.96 3.56
531 564 7.095060 GCATAATCTCTGTCAGTTGAGTTTTGA 60.095 37.037 0.00 0.00 0.00 2.69
532 565 8.777413 CATAATCTCTGTCAGTTGAGTTTTGAA 58.223 33.333 0.00 0.00 0.00 2.69
568 601 5.238214 AGTTCAGTTCAAGTTCAGCAATCTC 59.762 40.000 0.00 0.00 0.00 2.75
573 606 5.645497 AGTTCAAGTTCAGCAATCTCCATAC 59.355 40.000 0.00 0.00 0.00 2.39
578 611 5.609423 AGTTCAGCAATCTCCATACTGATC 58.391 41.667 0.00 0.00 37.24 2.92
583 616 7.114754 TCAGCAATCTCCATACTGATCTTTTT 58.885 34.615 0.00 0.00 32.65 1.94
675 718 3.881688 GCAGAGGTATCACGTAACTAGGA 59.118 47.826 0.00 0.00 27.86 2.94
799 845 5.028549 ACGATGAATCTTCCTAATGCTGT 57.971 39.130 0.00 0.00 0.00 4.40
853 910 3.274288 CACTTCTATCTGGCCTTTGACC 58.726 50.000 3.32 0.00 0.00 4.02
871 928 0.515564 CCTGTTCGCAACCTTTACCG 59.484 55.000 0.00 0.00 0.00 4.02
884 942 3.254892 CCTTTACCGACTCTTTCTGCTC 58.745 50.000 0.00 0.00 0.00 4.26
988 1050 4.407621 TCTCTAGGAAACACCACTCAACAA 59.592 41.667 0.00 0.00 42.04 2.83
1396 1507 0.178955 TCCCCGGTCTCAACACACTA 60.179 55.000 0.00 0.00 0.00 2.74
1467 1578 0.738762 CACACTCATCCTCGTGCCAG 60.739 60.000 0.00 0.00 34.58 4.85
1569 1680 2.976185 TCCTCAACAAGGGTGATGTGTA 59.024 45.455 0.00 0.00 46.23 2.90
1624 1735 2.238701 CCCCAACCCCTACAAGCCT 61.239 63.158 0.00 0.00 0.00 4.58
1678 1789 0.687098 CTGGGGCCATAACCATTGCA 60.687 55.000 4.39 0.00 35.93 4.08
1702 1813 1.021202 CTGTGTTTGGTTCGAAGCCA 58.979 50.000 23.50 17.95 0.00 4.75
1966 2082 2.805671 CGCACATGAGACCACACTTAAA 59.194 45.455 0.00 0.00 0.00 1.52
2008 2124 7.754851 ACCTAACCGTTCTTATGAAAACAAT 57.245 32.000 0.00 0.00 33.52 2.71
2034 2150 6.095377 GCTAGGTTTTGATCTGTTCCAAATG 58.905 40.000 0.00 0.00 33.00 2.32
2046 2162 7.921786 TCTGTTCCAAATGTAATAGTTGAGG 57.078 36.000 0.00 0.00 36.50 3.86
2118 2234 1.729149 GCGGCGACTTTTCATTTGGAG 60.729 52.381 12.98 0.00 0.00 3.86
2154 2271 4.022676 ACGATGTACAAAACAAATCCACCC 60.023 41.667 0.00 0.00 42.70 4.61
2175 2292 3.073946 CCTTTGGAGTGGGAAGGACTTAA 59.926 47.826 0.00 0.00 41.97 1.85
2209 2331 6.239120 CCTTTGGTAGCATGGGATTTTATCTG 60.239 42.308 0.00 0.00 0.00 2.90
2216 2338 4.728772 CATGGGATTTTATCTGTAGGCCA 58.271 43.478 5.01 0.00 0.00 5.36
2229 2351 4.162320 TCTGTAGGCCAAAAGATAGAGGTG 59.838 45.833 5.01 0.00 0.00 4.00
2230 2352 3.844211 TGTAGGCCAAAAGATAGAGGTGT 59.156 43.478 5.01 0.00 0.00 4.16
2234 2356 5.147767 AGGCCAAAAGATAGAGGTGTTTTT 58.852 37.500 5.01 0.00 0.00 1.94
2251 2373 9.190317 AGGTGTTTTTAGAATTATCAATCTCCC 57.810 33.333 0.00 0.00 0.00 4.30
2253 2375 9.190317 GTGTTTTTAGAATTATCAATCTCCCCT 57.810 33.333 0.00 0.00 0.00 4.79
2275 2397 5.146010 TCTCAAAACAACTGCCTTTTGTT 57.854 34.783 2.47 2.47 46.73 2.83
2279 2401 5.936956 TCAAAACAACTGCCTTTTGTTGAAT 59.063 32.000 11.97 0.00 44.56 2.57
2326 2448 8.585018 CCATTTTGATATACCTTGGGTTAATCC 58.415 37.037 0.00 0.00 37.09 3.01
2350 2472 9.146586 TCCCATTTGGAAATCTTATTATCAAGG 57.853 33.333 0.00 0.00 41.40 3.61
2351 2473 8.927411 CCCATTTGGAAATCTTATTATCAAGGT 58.073 33.333 0.00 0.00 37.39 3.50
2367 2489 3.012518 CAAGGTATCTTGCCAACTGAGG 58.987 50.000 2.04 0.00 43.10 3.86
2368 2490 2.551270 AGGTATCTTGCCAACTGAGGA 58.449 47.619 0.00 0.00 0.00 3.71
2369 2491 3.118531 AGGTATCTTGCCAACTGAGGAT 58.881 45.455 0.00 0.00 0.00 3.24
2370 2492 3.135530 AGGTATCTTGCCAACTGAGGATC 59.864 47.826 0.00 0.00 0.00 3.36
2371 2493 3.135530 GGTATCTTGCCAACTGAGGATCT 59.864 47.826 0.00 0.00 34.92 2.75
2372 2494 3.557228 ATCTTGCCAACTGAGGATCTC 57.443 47.619 0.00 0.00 34.92 2.75
2373 2495 2.259917 TCTTGCCAACTGAGGATCTCA 58.740 47.619 0.00 0.00 38.25 3.27
2374 2496 2.842496 TCTTGCCAACTGAGGATCTCAT 59.158 45.455 0.00 0.00 39.92 2.90
2375 2497 3.265221 TCTTGCCAACTGAGGATCTCATT 59.735 43.478 0.00 0.00 39.92 2.57
2376 2498 3.726557 TGCCAACTGAGGATCTCATTT 57.273 42.857 0.00 0.00 39.92 2.32
2377 2499 3.349927 TGCCAACTGAGGATCTCATTTG 58.650 45.455 16.19 16.19 44.89 2.32
2383 2505 7.636150 CAACTGAGGATCTCATTTGGTTAAT 57.364 36.000 15.65 0.00 43.03 1.40
2384 2506 7.701445 CAACTGAGGATCTCATTTGGTTAATC 58.299 38.462 15.65 0.00 43.03 1.75
2385 2507 7.205515 ACTGAGGATCTCATTTGGTTAATCT 57.794 36.000 0.00 0.00 39.92 2.40
2386 2508 7.278875 ACTGAGGATCTCATTTGGTTAATCTC 58.721 38.462 0.00 0.00 39.92 2.75
2387 2509 6.595682 TGAGGATCTCATTTGGTTAATCTCC 58.404 40.000 0.00 0.00 35.39 3.71
2388 2510 6.158520 TGAGGATCTCATTTGGTTAATCTCCA 59.841 38.462 0.00 0.00 35.39 3.86
2389 2511 6.360618 AGGATCTCATTTGGTTAATCTCCAC 58.639 40.000 0.00 0.00 34.45 4.02
2390 2512 6.069440 AGGATCTCATTTGGTTAATCTCCACA 60.069 38.462 0.00 0.00 34.45 4.17
2391 2513 6.038714 GGATCTCATTTGGTTAATCTCCACAC 59.961 42.308 0.00 0.00 34.45 3.82
2392 2514 4.935205 TCTCATTTGGTTAATCTCCACACG 59.065 41.667 0.00 0.00 34.45 4.49
2393 2515 4.900684 TCATTTGGTTAATCTCCACACGA 58.099 39.130 0.00 0.00 34.45 4.35
2394 2516 5.496556 TCATTTGGTTAATCTCCACACGAT 58.503 37.500 0.00 0.00 34.45 3.73
2395 2517 5.943416 TCATTTGGTTAATCTCCACACGATT 59.057 36.000 0.00 0.00 34.45 3.34
2396 2518 7.106890 TCATTTGGTTAATCTCCACACGATTA 58.893 34.615 0.00 0.00 34.45 1.75
2397 2519 7.608376 TCATTTGGTTAATCTCCACACGATTAA 59.392 33.333 0.00 0.00 39.64 1.40
2398 2520 7.931578 TTTGGTTAATCTCCACACGATTAAT 57.068 32.000 8.04 0.00 42.18 1.40
2399 2521 7.931578 TTGGTTAATCTCCACACGATTAATT 57.068 32.000 8.04 0.00 42.18 1.40
2400 2522 9.451002 TTTGGTTAATCTCCACACGATTAATTA 57.549 29.630 8.04 0.00 42.18 1.40
2401 2523 9.621629 TTGGTTAATCTCCACACGATTAATTAT 57.378 29.630 8.04 0.00 42.18 1.28
2402 2524 9.268268 TGGTTAATCTCCACACGATTAATTATC 57.732 33.333 8.04 0.00 42.18 1.75
2420 2542 9.823647 TTAATTATCGATCTTCTTGCTCTTTCT 57.176 29.630 0.00 0.00 0.00 2.52
2422 2544 9.474920 AATTATCGATCTTCTTGCTCTTTCTAG 57.525 33.333 0.00 0.00 0.00 2.43
2423 2545 5.906113 TCGATCTTCTTGCTCTTTCTAGT 57.094 39.130 0.00 0.00 0.00 2.57
2424 2546 5.645624 TCGATCTTCTTGCTCTTTCTAGTG 58.354 41.667 0.00 0.00 0.00 2.74
2425 2547 4.803088 CGATCTTCTTGCTCTTTCTAGTGG 59.197 45.833 0.00 0.00 0.00 4.00
2426 2548 5.393569 CGATCTTCTTGCTCTTTCTAGTGGA 60.394 44.000 0.00 0.00 0.00 4.02
2427 2549 5.398603 TCTTCTTGCTCTTTCTAGTGGAG 57.601 43.478 0.00 0.00 0.00 3.86
2428 2550 4.221703 TCTTCTTGCTCTTTCTAGTGGAGG 59.778 45.833 9.86 0.00 0.00 4.30
2429 2551 2.834549 TCTTGCTCTTTCTAGTGGAGGG 59.165 50.000 9.86 0.37 0.00 4.30
2430 2552 2.623418 TGCTCTTTCTAGTGGAGGGA 57.377 50.000 9.86 0.00 0.00 4.20
2431 2553 2.180276 TGCTCTTTCTAGTGGAGGGAC 58.820 52.381 9.86 0.00 0.00 4.46
2433 2555 3.011369 TGCTCTTTCTAGTGGAGGGACTA 59.989 47.826 9.86 0.00 41.55 2.59
2434 2556 3.382227 GCTCTTTCTAGTGGAGGGACTAC 59.618 52.174 9.86 0.00 41.55 2.73
2435 2557 3.955551 CTCTTTCTAGTGGAGGGACTACC 59.044 52.174 0.00 0.00 39.75 3.18
2452 2574 8.570068 GGGACTACCTCAAATTATTACAAACA 57.430 34.615 0.00 0.00 35.85 2.83
2453 2575 9.185680 GGGACTACCTCAAATTATTACAAACAT 57.814 33.333 0.00 0.00 35.85 2.71
2471 2593 8.757982 ACAAACATATAAAGATCATGCTTCCT 57.242 30.769 0.00 0.00 0.00 3.36
2472 2594 8.627403 ACAAACATATAAAGATCATGCTTCCTG 58.373 33.333 0.00 0.00 0.00 3.86
2473 2595 8.627403 CAAACATATAAAGATCATGCTTCCTGT 58.373 33.333 0.00 0.00 0.00 4.00
2474 2596 8.757982 AACATATAAAGATCATGCTTCCTGTT 57.242 30.769 0.00 0.00 0.00 3.16
2475 2597 8.388484 ACATATAAAGATCATGCTTCCTGTTC 57.612 34.615 0.00 0.00 0.00 3.18
2476 2598 7.446625 ACATATAAAGATCATGCTTCCTGTTCC 59.553 37.037 0.00 0.00 0.00 3.62
2477 2599 3.726557 AAGATCATGCTTCCTGTTCCA 57.273 42.857 0.00 0.00 0.00 3.53
2478 2600 3.947612 AGATCATGCTTCCTGTTCCAT 57.052 42.857 0.00 0.00 0.00 3.41
2479 2601 4.246712 AGATCATGCTTCCTGTTCCATT 57.753 40.909 0.00 0.00 0.00 3.16
2480 2602 4.205587 AGATCATGCTTCCTGTTCCATTC 58.794 43.478 0.00 0.00 0.00 2.67
2481 2603 3.438216 TCATGCTTCCTGTTCCATTCA 57.562 42.857 0.00 0.00 0.00 2.57
2482 2604 3.765381 TCATGCTTCCTGTTCCATTCAA 58.235 40.909 0.00 0.00 0.00 2.69
2483 2605 3.760151 TCATGCTTCCTGTTCCATTCAAG 59.240 43.478 0.00 0.00 0.00 3.02
2484 2606 2.517959 TGCTTCCTGTTCCATTCAAGG 58.482 47.619 0.00 0.00 0.00 3.61
2485 2607 2.158475 TGCTTCCTGTTCCATTCAAGGT 60.158 45.455 0.00 0.00 0.00 3.50
2486 2608 2.229784 GCTTCCTGTTCCATTCAAGGTG 59.770 50.000 0.00 0.00 0.00 4.00
2487 2609 2.584835 TCCTGTTCCATTCAAGGTGG 57.415 50.000 0.00 0.00 38.11 4.61
2488 2610 1.780309 TCCTGTTCCATTCAAGGTGGT 59.220 47.619 0.00 0.00 37.96 4.16
2489 2611 2.176798 TCCTGTTCCATTCAAGGTGGTT 59.823 45.455 0.00 0.00 37.96 3.67
2490 2612 2.965147 CCTGTTCCATTCAAGGTGGTTT 59.035 45.455 0.00 0.00 37.96 3.27
2491 2613 3.005791 CCTGTTCCATTCAAGGTGGTTTC 59.994 47.826 0.00 0.00 37.96 2.78
2492 2614 3.636300 CTGTTCCATTCAAGGTGGTTTCA 59.364 43.478 0.00 0.00 37.96 2.69
2493 2615 3.383185 TGTTCCATTCAAGGTGGTTTCAC 59.617 43.478 0.00 0.00 42.91 3.18
2494 2616 3.593442 TCCATTCAAGGTGGTTTCACT 57.407 42.857 0.00 0.00 43.17 3.41
2495 2617 4.715534 TCCATTCAAGGTGGTTTCACTA 57.284 40.909 0.00 0.00 43.17 2.74
2496 2618 5.255397 TCCATTCAAGGTGGTTTCACTAT 57.745 39.130 0.00 0.00 43.17 2.12
2497 2619 5.009631 TCCATTCAAGGTGGTTTCACTATG 58.990 41.667 0.00 0.00 43.17 2.23
2498 2620 4.158394 CCATTCAAGGTGGTTTCACTATGG 59.842 45.833 0.00 0.00 43.17 2.74
2499 2621 4.715534 TTCAAGGTGGTTTCACTATGGA 57.284 40.909 0.00 0.00 43.17 3.41
2500 2622 4.715534 TCAAGGTGGTTTCACTATGGAA 57.284 40.909 0.00 0.00 43.17 3.53
2501 2623 5.055265 TCAAGGTGGTTTCACTATGGAAA 57.945 39.130 0.00 0.00 43.17 3.13
2502 2624 5.640147 TCAAGGTGGTTTCACTATGGAAAT 58.360 37.500 0.00 0.00 43.17 2.17
2503 2625 6.074648 TCAAGGTGGTTTCACTATGGAAATT 58.925 36.000 0.00 0.00 43.17 1.82
2504 2626 6.553100 TCAAGGTGGTTTCACTATGGAAATTT 59.447 34.615 0.00 0.00 43.17 1.82
2505 2627 6.345096 AGGTGGTTTCACTATGGAAATTTG 57.655 37.500 0.00 0.00 43.17 2.32
2506 2628 5.245977 AGGTGGTTTCACTATGGAAATTTGG 59.754 40.000 0.00 0.00 43.17 3.28
2507 2629 5.245075 GGTGGTTTCACTATGGAAATTTGGA 59.755 40.000 0.00 0.00 43.17 3.53
2508 2630 6.239458 GGTGGTTTCACTATGGAAATTTGGAA 60.239 38.462 0.00 0.00 43.17 3.53
2509 2631 7.386059 GTGGTTTCACTATGGAAATTTGGAAT 58.614 34.615 0.00 0.00 38.86 3.01
2510 2632 7.331687 GTGGTTTCACTATGGAAATTTGGAATG 59.668 37.037 0.00 0.00 38.86 2.67
2511 2633 7.234371 TGGTTTCACTATGGAAATTTGGAATGA 59.766 33.333 0.00 0.00 38.86 2.57
2512 2634 8.260114 GGTTTCACTATGGAAATTTGGAATGAT 58.740 33.333 0.00 0.00 38.86 2.45
2527 2649 8.765488 TTTGGAATGATAATTAGCAATCTCCA 57.235 30.769 20.22 20.22 31.45 3.86
2528 2650 8.765488 TTGGAATGATAATTAGCAATCTCCAA 57.235 30.769 25.83 25.83 36.96 3.53
2529 2651 8.765488 TGGAATGATAATTAGCAATCTCCAAA 57.235 30.769 21.15 7.49 30.84 3.28
2530 2652 8.632679 TGGAATGATAATTAGCAATCTCCAAAC 58.367 33.333 21.15 6.75 30.84 2.93
2531 2653 8.632679 GGAATGATAATTAGCAATCTCCAAACA 58.367 33.333 16.18 0.00 0.00 2.83
2532 2654 9.674824 GAATGATAATTAGCAATCTCCAAACAG 57.325 33.333 7.61 0.00 0.00 3.16
2533 2655 8.985315 ATGATAATTAGCAATCTCCAAACAGA 57.015 30.769 7.61 0.00 0.00 3.41
2534 2656 8.806429 TGATAATTAGCAATCTCCAAACAGAA 57.194 30.769 0.00 0.00 0.00 3.02
2535 2657 8.896744 TGATAATTAGCAATCTCCAAACAGAAG 58.103 33.333 0.00 0.00 0.00 2.85
2536 2658 6.521151 AATTAGCAATCTCCAAACAGAAGG 57.479 37.500 0.00 0.00 0.00 3.46
2537 2659 2.165998 AGCAATCTCCAAACAGAAGGC 58.834 47.619 0.00 0.00 0.00 4.35
2538 2660 1.888512 GCAATCTCCAAACAGAAGGCA 59.111 47.619 0.00 0.00 0.00 4.75
2539 2661 2.297033 GCAATCTCCAAACAGAAGGCAA 59.703 45.455 0.00 0.00 0.00 4.52
2540 2662 3.613432 GCAATCTCCAAACAGAAGGCAAG 60.613 47.826 0.00 0.00 0.00 4.01
2541 2663 3.515602 ATCTCCAAACAGAAGGCAAGT 57.484 42.857 0.00 0.00 0.00 3.16
2542 2664 2.851195 TCTCCAAACAGAAGGCAAGTC 58.149 47.619 0.00 0.00 0.00 3.01
2543 2665 2.439507 TCTCCAAACAGAAGGCAAGTCT 59.560 45.455 0.00 0.00 0.00 3.24
2544 2666 3.646162 TCTCCAAACAGAAGGCAAGTCTA 59.354 43.478 0.00 0.00 0.00 2.59
2545 2667 3.999663 CTCCAAACAGAAGGCAAGTCTAG 59.000 47.826 0.00 0.00 0.00 2.43
2546 2668 2.485814 CCAAACAGAAGGCAAGTCTAGC 59.514 50.000 0.00 0.00 0.00 3.42
2553 2675 4.675404 GCAAGTCTAGCCACACGT 57.325 55.556 0.00 0.00 0.00 4.49
2554 2676 2.153913 GCAAGTCTAGCCACACGTG 58.846 57.895 15.48 15.48 0.00 4.49
2555 2677 1.901650 GCAAGTCTAGCCACACGTGC 61.902 60.000 17.22 0.86 40.09 5.34
2556 2678 0.599991 CAAGTCTAGCCACACGTGCA 60.600 55.000 17.22 0.00 0.00 4.57
2557 2679 0.321671 AAGTCTAGCCACACGTGCAT 59.678 50.000 17.22 1.25 0.00 3.96
2558 2680 0.321671 AGTCTAGCCACACGTGCATT 59.678 50.000 17.22 1.33 0.00 3.56
2559 2681 0.721718 GTCTAGCCACACGTGCATTC 59.278 55.000 17.22 2.36 0.00 2.67
2560 2682 0.608130 TCTAGCCACACGTGCATTCT 59.392 50.000 17.22 10.21 0.00 2.40
2561 2683 1.001974 TCTAGCCACACGTGCATTCTT 59.998 47.619 17.22 0.00 0.00 2.52
2562 2684 1.806542 CTAGCCACACGTGCATTCTTT 59.193 47.619 17.22 0.00 0.00 2.52
2563 2685 0.593128 AGCCACACGTGCATTCTTTC 59.407 50.000 17.22 0.00 0.00 2.62
2564 2686 0.593128 GCCACACGTGCATTCTTTCT 59.407 50.000 17.22 0.00 0.00 2.52
2565 2687 1.001378 GCCACACGTGCATTCTTTCTT 60.001 47.619 17.22 0.00 0.00 2.52
2566 2688 2.918131 GCCACACGTGCATTCTTTCTTC 60.918 50.000 17.22 0.00 0.00 2.87
2567 2689 2.290367 CCACACGTGCATTCTTTCTTCA 59.710 45.455 17.22 0.00 0.00 3.02
2568 2690 3.548587 CACACGTGCATTCTTTCTTCAG 58.451 45.455 17.22 0.00 0.00 3.02
2569 2691 3.248363 CACACGTGCATTCTTTCTTCAGA 59.752 43.478 17.22 0.00 0.00 3.27
2570 2692 3.496130 ACACGTGCATTCTTTCTTCAGAG 59.504 43.478 17.22 0.00 0.00 3.35
2571 2693 3.742882 CACGTGCATTCTTTCTTCAGAGA 59.257 43.478 0.82 0.00 0.00 3.10
2572 2694 4.391216 CACGTGCATTCTTTCTTCAGAGAT 59.609 41.667 0.82 0.00 0.00 2.75
2573 2695 4.629200 ACGTGCATTCTTTCTTCAGAGATC 59.371 41.667 0.00 0.00 0.00 2.75
2574 2696 4.628766 CGTGCATTCTTTCTTCAGAGATCA 59.371 41.667 0.00 0.00 0.00 2.92
2575 2697 5.293814 CGTGCATTCTTTCTTCAGAGATCAT 59.706 40.000 0.00 0.00 0.00 2.45
2576 2698 6.509837 CGTGCATTCTTTCTTCAGAGATCATC 60.510 42.308 0.00 0.00 0.00 2.92
2577 2699 6.315642 GTGCATTCTTTCTTCAGAGATCATCA 59.684 38.462 0.00 0.00 0.00 3.07
2578 2700 6.315642 TGCATTCTTTCTTCAGAGATCATCAC 59.684 38.462 0.00 0.00 0.00 3.06
2579 2701 6.315642 GCATTCTTTCTTCAGAGATCATCACA 59.684 38.462 0.00 0.00 0.00 3.58
2580 2702 7.012515 GCATTCTTTCTTCAGAGATCATCACAT 59.987 37.037 0.00 0.00 0.00 3.21
2581 2703 8.894731 CATTCTTTCTTCAGAGATCATCACATT 58.105 33.333 0.00 0.00 0.00 2.71
2582 2704 8.859236 TTCTTTCTTCAGAGATCATCACATTT 57.141 30.769 0.00 0.00 0.00 2.32
2583 2705 8.489990 TCTTTCTTCAGAGATCATCACATTTC 57.510 34.615 0.00 0.00 0.00 2.17
2584 2706 8.319881 TCTTTCTTCAGAGATCATCACATTTCT 58.680 33.333 0.00 0.00 0.00 2.52
2585 2707 8.859236 TTTCTTCAGAGATCATCACATTTCTT 57.141 30.769 0.00 0.00 0.00 2.52
2586 2708 8.859236 TTCTTCAGAGATCATCACATTTCTTT 57.141 30.769 0.00 0.00 0.00 2.52
2587 2709 8.265165 TCTTCAGAGATCATCACATTTCTTTG 57.735 34.615 0.00 0.00 0.00 2.77
2588 2710 6.432607 TCAGAGATCATCACATTTCTTTGC 57.567 37.500 0.00 0.00 0.00 3.68
2589 2711 5.941647 TCAGAGATCATCACATTTCTTTGCA 59.058 36.000 0.00 0.00 0.00 4.08
2590 2712 6.602009 TCAGAGATCATCACATTTCTTTGCAT 59.398 34.615 0.00 0.00 0.00 3.96
2591 2713 6.693113 CAGAGATCATCACATTTCTTTGCATG 59.307 38.462 0.00 0.00 0.00 4.06
2592 2714 5.348986 AGATCATCACATTTCTTTGCATGC 58.651 37.500 11.82 11.82 0.00 4.06
2593 2715 3.852286 TCATCACATTTCTTTGCATGCC 58.148 40.909 16.68 0.00 0.00 4.40
2594 2716 3.258622 TCATCACATTTCTTTGCATGCCA 59.741 39.130 16.68 0.00 0.00 4.92
2595 2717 3.965379 TCACATTTCTTTGCATGCCAT 57.035 38.095 16.68 0.00 0.00 4.40
2596 2718 3.591023 TCACATTTCTTTGCATGCCATG 58.409 40.909 16.68 6.79 0.00 3.66
2597 2719 3.258622 TCACATTTCTTTGCATGCCATGA 59.741 39.130 16.68 9.33 0.00 3.07
2598 2720 3.616821 CACATTTCTTTGCATGCCATGAG 59.383 43.478 16.68 7.74 0.00 2.90
2599 2721 2.373540 TTTCTTTGCATGCCATGAGC 57.626 45.000 16.68 0.00 44.14 4.26
2611 2733 3.091318 CATGAGCACCATGGAGGAC 57.909 57.895 21.47 7.73 46.85 3.85
2612 2734 0.253894 CATGAGCACCATGGAGGACA 59.746 55.000 21.47 13.24 46.85 4.02
2613 2735 0.994247 ATGAGCACCATGGAGGACAA 59.006 50.000 21.47 0.00 41.22 3.18
2614 2736 0.994247 TGAGCACCATGGAGGACAAT 59.006 50.000 21.47 0.00 41.22 2.71
2615 2737 1.340308 TGAGCACCATGGAGGACAATG 60.340 52.381 21.47 5.19 41.22 2.82
2616 2738 0.682209 AGCACCATGGAGGACAATGC 60.682 55.000 21.47 15.95 41.22 3.56
2617 2739 0.682209 GCACCATGGAGGACAATGCT 60.682 55.000 21.47 0.00 41.22 3.79
2618 2740 1.100510 CACCATGGAGGACAATGCTG 58.899 55.000 21.47 0.00 41.22 4.41
2619 2741 0.994247 ACCATGGAGGACAATGCTGA 59.006 50.000 21.47 0.00 41.22 4.26
2620 2742 1.340405 ACCATGGAGGACAATGCTGAC 60.340 52.381 21.47 0.00 41.22 3.51
2621 2743 1.386533 CATGGAGGACAATGCTGACC 58.613 55.000 0.00 0.00 37.62 4.02
2622 2744 0.994247 ATGGAGGACAATGCTGACCA 59.006 50.000 0.00 0.00 39.57 4.02
2623 2745 0.994247 TGGAGGACAATGCTGACCAT 59.006 50.000 0.00 0.00 39.57 3.55
2624 2746 1.355381 TGGAGGACAATGCTGACCATT 59.645 47.619 0.00 0.00 44.86 3.16
2625 2747 2.225091 TGGAGGACAATGCTGACCATTT 60.225 45.455 0.00 0.00 42.15 2.32
2626 2748 2.827921 GGAGGACAATGCTGACCATTTT 59.172 45.455 0.00 0.00 42.15 1.82
2627 2749 3.119352 GGAGGACAATGCTGACCATTTTC 60.119 47.826 0.00 0.00 42.15 2.29
2628 2750 3.499338 AGGACAATGCTGACCATTTTCA 58.501 40.909 5.04 0.00 42.15 2.69
2629 2751 4.091549 AGGACAATGCTGACCATTTTCAT 58.908 39.130 5.04 0.00 42.15 2.57
2630 2752 4.529377 AGGACAATGCTGACCATTTTCATT 59.471 37.500 5.04 0.00 42.15 2.57
2631 2753 5.012354 AGGACAATGCTGACCATTTTCATTT 59.988 36.000 5.04 0.00 42.15 2.32
2632 2754 5.121142 GGACAATGCTGACCATTTTCATTTG 59.879 40.000 5.04 0.00 42.15 2.32
2633 2755 4.453136 ACAATGCTGACCATTTTCATTTGC 59.547 37.500 0.00 0.00 42.15 3.68
2634 2756 3.042871 TGCTGACCATTTTCATTTGCC 57.957 42.857 0.00 0.00 0.00 4.52
2635 2757 2.367894 TGCTGACCATTTTCATTTGCCA 59.632 40.909 0.00 0.00 0.00 4.92
2636 2758 2.738314 GCTGACCATTTTCATTTGCCAC 59.262 45.455 0.00 0.00 0.00 5.01
2637 2759 3.555586 GCTGACCATTTTCATTTGCCACT 60.556 43.478 0.00 0.00 0.00 4.00
2638 2760 4.634199 CTGACCATTTTCATTTGCCACTT 58.366 39.130 0.00 0.00 0.00 3.16
2639 2761 5.033589 TGACCATTTTCATTTGCCACTTT 57.966 34.783 0.00 0.00 0.00 2.66
2640 2762 5.055812 TGACCATTTTCATTTGCCACTTTC 58.944 37.500 0.00 0.00 0.00 2.62
2641 2763 5.033589 ACCATTTTCATTTGCCACTTTCA 57.966 34.783 0.00 0.00 0.00 2.69
2642 2764 5.435291 ACCATTTTCATTTGCCACTTTCAA 58.565 33.333 0.00 0.00 0.00 2.69
2643 2765 6.063404 ACCATTTTCATTTGCCACTTTCAAT 58.937 32.000 0.00 0.00 0.00 2.57
2644 2766 7.222872 ACCATTTTCATTTGCCACTTTCAATA 58.777 30.769 0.00 0.00 0.00 1.90
2645 2767 7.388500 ACCATTTTCATTTGCCACTTTCAATAG 59.612 33.333 0.00 0.00 0.00 1.73
2646 2768 7.603404 CCATTTTCATTTGCCACTTTCAATAGA 59.397 33.333 0.00 0.00 0.00 1.98
2647 2769 8.991026 CATTTTCATTTGCCACTTTCAATAGAA 58.009 29.630 0.00 0.00 0.00 2.10
2648 2770 8.592105 TTTTCATTTGCCACTTTCAATAGAAG 57.408 30.769 0.00 0.00 34.71 2.85
2649 2771 5.713025 TCATTTGCCACTTTCAATAGAAGC 58.287 37.500 0.00 0.00 34.71 3.86
2650 2772 5.243507 TCATTTGCCACTTTCAATAGAAGCA 59.756 36.000 0.00 0.00 34.71 3.91
2651 2773 5.726980 TTTGCCACTTTCAATAGAAGCAT 57.273 34.783 0.00 0.00 34.71 3.79
2652 2774 5.726980 TTGCCACTTTCAATAGAAGCATT 57.273 34.783 0.00 0.00 34.71 3.56
2653 2775 5.726980 TGCCACTTTCAATAGAAGCATTT 57.273 34.783 0.00 0.00 34.71 2.32
2654 2776 5.472148 TGCCACTTTCAATAGAAGCATTTG 58.528 37.500 0.00 0.00 34.71 2.32
2655 2777 5.010922 TGCCACTTTCAATAGAAGCATTTGT 59.989 36.000 0.00 0.00 34.71 2.83
2656 2778 5.928264 GCCACTTTCAATAGAAGCATTTGTT 59.072 36.000 0.00 0.00 34.71 2.83
2657 2779 6.089954 GCCACTTTCAATAGAAGCATTTGTTC 59.910 38.462 0.00 0.00 34.71 3.18
2658 2780 7.373493 CCACTTTCAATAGAAGCATTTGTTCT 58.627 34.615 0.00 0.00 37.94 3.01
2659 2781 8.514594 CCACTTTCAATAGAAGCATTTGTTCTA 58.485 33.333 0.00 0.00 40.07 2.10
2667 2789 8.814038 ATAGAAGCATTTGTTCTATTTCAGGT 57.186 30.769 0.55 0.00 42.20 4.00
2668 2790 6.917533 AGAAGCATTTGTTCTATTTCAGGTG 58.082 36.000 0.00 0.00 32.29 4.00
2669 2791 6.716628 AGAAGCATTTGTTCTATTTCAGGTGA 59.283 34.615 0.00 0.00 32.29 4.02
2670 2792 7.395489 AGAAGCATTTGTTCTATTTCAGGTGAT 59.605 33.333 0.00 0.00 32.29 3.06
2671 2793 6.860080 AGCATTTGTTCTATTTCAGGTGATG 58.140 36.000 0.00 0.00 0.00 3.07
2672 2794 6.660521 AGCATTTGTTCTATTTCAGGTGATGA 59.339 34.615 0.00 0.00 35.62 2.92
2673 2795 7.177216 AGCATTTGTTCTATTTCAGGTGATGAA 59.823 33.333 0.00 0.00 46.31 2.57
2684 2806 5.190992 TCAGGTGATGAATAATGCATTGC 57.809 39.130 22.27 11.37 34.02 3.56
2685 2807 4.645588 TCAGGTGATGAATAATGCATTGCA 59.354 37.500 22.27 14.72 37.80 4.08
2686 2808 5.303333 TCAGGTGATGAATAATGCATTGCAT 59.697 36.000 22.27 18.31 42.68 3.96
2687 2809 6.737346 TCAGGTGATGAATAATGCATTGCATG 60.737 38.462 24.04 9.02 41.06 4.06
2701 2823 5.873179 CATTGCATGCTTTGGAATTTTCT 57.127 34.783 20.33 0.00 43.09 2.52
2702 2824 6.971527 CATTGCATGCTTTGGAATTTTCTA 57.028 33.333 20.33 0.00 43.09 2.10
2703 2825 7.367159 CATTGCATGCTTTGGAATTTTCTAA 57.633 32.000 20.33 0.00 43.09 2.10
2704 2826 7.981142 CATTGCATGCTTTGGAATTTTCTAAT 58.019 30.769 20.33 1.74 43.09 1.73
2705 2827 6.971527 TGCATGCTTTGGAATTTTCTAATG 57.028 33.333 20.33 0.00 0.00 1.90
2706 2828 6.699366 TGCATGCTTTGGAATTTTCTAATGA 58.301 32.000 20.33 0.00 0.00 2.57
2707 2829 6.814644 TGCATGCTTTGGAATTTTCTAATGAG 59.185 34.615 20.33 0.00 0.00 2.90
2708 2830 6.238022 GCATGCTTTGGAATTTTCTAATGAGC 60.238 38.462 11.37 6.28 34.24 4.26
2709 2831 6.343716 TGCTTTGGAATTTTCTAATGAGCA 57.656 33.333 10.09 10.09 38.40 4.26
2710 2832 6.938507 TGCTTTGGAATTTTCTAATGAGCAT 58.061 32.000 10.09 0.00 36.92 3.79
2711 2833 6.814644 TGCTTTGGAATTTTCTAATGAGCATG 59.185 34.615 10.09 0.00 36.92 4.06
2712 2834 7.037438 GCTTTGGAATTTTCTAATGAGCATGA 58.963 34.615 0.00 0.00 34.00 3.07
2713 2835 7.709613 GCTTTGGAATTTTCTAATGAGCATGAT 59.290 33.333 0.00 0.00 34.00 2.45
2714 2836 9.595823 CTTTGGAATTTTCTAATGAGCATGATT 57.404 29.630 0.00 0.00 0.00 2.57
2715 2837 9.947433 TTTGGAATTTTCTAATGAGCATGATTT 57.053 25.926 0.00 0.00 0.00 2.17
2716 2838 9.947433 TTGGAATTTTCTAATGAGCATGATTTT 57.053 25.926 0.00 0.00 0.00 1.82
2717 2839 9.947433 TGGAATTTTCTAATGAGCATGATTTTT 57.053 25.926 0.00 0.00 0.00 1.94
2720 2842 7.599630 TTTTCTAATGAGCATGATTTTTGGC 57.400 32.000 0.00 0.00 0.00 4.52
2721 2843 5.918426 TCTAATGAGCATGATTTTTGGCA 57.082 34.783 0.00 0.00 0.00 4.92
2722 2844 6.283544 TCTAATGAGCATGATTTTTGGCAA 57.716 33.333 0.00 0.00 0.00 4.52
2723 2845 6.699366 TCTAATGAGCATGATTTTTGGCAAA 58.301 32.000 8.93 8.93 0.00 3.68
2724 2846 7.332557 TCTAATGAGCATGATTTTTGGCAAAT 58.667 30.769 14.29 0.00 0.00 2.32
2725 2847 6.431198 AATGAGCATGATTTTTGGCAAATC 57.569 33.333 14.29 9.93 37.21 2.17
2726 2848 4.255301 TGAGCATGATTTTTGGCAAATCC 58.745 39.130 14.29 6.65 36.17 3.01
2727 2849 3.613030 AGCATGATTTTTGGCAAATCCC 58.387 40.909 14.29 6.30 36.17 3.85
2728 2850 3.264964 AGCATGATTTTTGGCAAATCCCT 59.735 39.130 14.29 3.62 36.17 4.20
2729 2851 3.624410 GCATGATTTTTGGCAAATCCCTC 59.376 43.478 14.29 8.69 36.17 4.30
2730 2852 4.624604 GCATGATTTTTGGCAAATCCCTCT 60.625 41.667 14.29 0.00 36.17 3.69
2731 2853 5.395546 GCATGATTTTTGGCAAATCCCTCTA 60.396 40.000 14.29 0.00 36.17 2.43
2732 2854 5.920193 TGATTTTTGGCAAATCCCTCTAG 57.080 39.130 14.29 0.00 36.17 2.43
2733 2855 4.711355 TGATTTTTGGCAAATCCCTCTAGG 59.289 41.667 14.29 0.00 36.17 3.02
2734 2856 3.825908 TTTTGGCAAATCCCTCTAGGT 57.174 42.857 14.29 0.00 36.75 3.08
2735 2857 2.806945 TTGGCAAATCCCTCTAGGTG 57.193 50.000 0.00 0.00 36.75 4.00
2736 2858 0.255890 TGGCAAATCCCTCTAGGTGC 59.744 55.000 1.67 1.67 36.75 5.01
2737 2859 0.255890 GGCAAATCCCTCTAGGTGCA 59.744 55.000 10.45 0.00 35.79 4.57
2738 2860 1.383523 GCAAATCCCTCTAGGTGCAC 58.616 55.000 8.80 8.80 34.67 4.57
2739 2861 1.065126 GCAAATCCCTCTAGGTGCACT 60.065 52.381 17.98 5.41 34.67 4.40
2740 2862 2.619074 GCAAATCCCTCTAGGTGCACTT 60.619 50.000 17.98 12.49 34.67 3.16
2741 2863 3.370527 GCAAATCCCTCTAGGTGCACTTA 60.371 47.826 17.98 13.05 34.67 2.24
2742 2864 4.446371 CAAATCCCTCTAGGTGCACTTAG 58.554 47.826 25.74 25.74 36.75 2.18
2743 2865 1.486211 TCCCTCTAGGTGCACTTAGC 58.514 55.000 26.59 6.91 45.96 3.09
2744 2866 1.007238 TCCCTCTAGGTGCACTTAGCT 59.993 52.381 26.59 13.80 45.94 3.32
2745 2867 1.834263 CCCTCTAGGTGCACTTAGCTT 59.166 52.381 26.59 5.64 45.94 3.74
2746 2868 2.159028 CCCTCTAGGTGCACTTAGCTTC 60.159 54.545 26.59 5.08 45.94 3.86
2747 2869 2.763448 CCTCTAGGTGCACTTAGCTTCT 59.237 50.000 26.59 12.10 45.94 2.85
2748 2870 3.181480 CCTCTAGGTGCACTTAGCTTCTC 60.181 52.174 26.59 3.64 45.94 2.87
2749 2871 3.699038 CTCTAGGTGCACTTAGCTTCTCT 59.301 47.826 26.59 10.76 45.94 3.10
2750 2872 4.856509 TCTAGGTGCACTTAGCTTCTCTA 58.143 43.478 26.59 11.28 45.94 2.43
2751 2873 3.878160 AGGTGCACTTAGCTTCTCTAC 57.122 47.619 17.98 0.00 45.94 2.59
2752 2874 3.165875 AGGTGCACTTAGCTTCTCTACA 58.834 45.455 17.98 0.00 45.94 2.74
2753 2875 3.772025 AGGTGCACTTAGCTTCTCTACAT 59.228 43.478 17.98 0.00 45.94 2.29
2754 2876 4.116238 GGTGCACTTAGCTTCTCTACATC 58.884 47.826 17.98 0.00 45.94 3.06
2755 2877 4.142049 GGTGCACTTAGCTTCTCTACATCT 60.142 45.833 17.98 0.00 45.94 2.90
2756 2878 5.067936 GGTGCACTTAGCTTCTCTACATCTA 59.932 44.000 17.98 0.00 45.94 1.98
2757 2879 6.405953 GGTGCACTTAGCTTCTCTACATCTAA 60.406 42.308 17.98 0.00 45.94 2.10
2758 2880 6.695278 GTGCACTTAGCTTCTCTACATCTAAG 59.305 42.308 10.32 0.00 45.94 2.18
2759 2881 6.183360 TGCACTTAGCTTCTCTACATCTAAGG 60.183 42.308 0.00 3.32 45.94 2.69
2760 2882 6.183360 GCACTTAGCTTCTCTACATCTAAGGT 60.183 42.308 0.00 0.00 40.05 3.50
2761 2883 7.013464 GCACTTAGCTTCTCTACATCTAAGGTA 59.987 40.741 0.00 0.00 40.05 3.08
2762 2884 9.073475 CACTTAGCTTCTCTACATCTAAGGTAT 57.927 37.037 0.00 0.00 40.05 2.73
2767 2889 9.914834 AGCTTCTCTACATCTAAGGTATATAGG 57.085 37.037 0.00 0.00 0.00 2.57
2768 2890 9.689501 GCTTCTCTACATCTAAGGTATATAGGT 57.310 37.037 0.00 0.00 0.00 3.08
2782 2904 9.890915 AAGGTATATAGGTTTCTCATCTCTTCT 57.109 33.333 0.00 0.00 0.00 2.85
2783 2905 9.890915 AGGTATATAGGTTTCTCATCTCTTCTT 57.109 33.333 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 56 8.994170 GCTCTATAATAGACCATTTGAACCTTC 58.006 37.037 0.00 0.00 0.00 3.46
56 63 8.988064 ATACACGCTCTATAATAGACCATTTG 57.012 34.615 0.00 0.00 0.00 2.32
137 166 5.169295 ACCGAGTCTGAAGCAAATAAGTAC 58.831 41.667 0.00 0.00 0.00 2.73
176 205 5.632244 CATGAAATGGTCACTGTTGATGA 57.368 39.130 0.00 0.00 41.79 2.92
352 385 8.279103 GCTTCTAATGTCATACTGCATAAGTTC 58.721 37.037 0.00 0.00 40.56 3.01
367 400 6.531948 AGTCACTAACGATTGCTTCTAATGTC 59.468 38.462 0.00 0.00 0.00 3.06
445 478 3.755378 AGCAATTGACTTGGTCATCAGTC 59.245 43.478 10.34 0.00 41.68 3.51
449 482 5.382618 AGAAAGCAATTGACTTGGTCATC 57.617 39.130 10.34 6.42 44.60 2.92
466 499 4.330250 TCCATCCTTGCTTCTGAAGAAAG 58.670 43.478 25.20 25.20 42.79 2.62
568 601 3.364549 TGCCCCAAAAAGATCAGTATGG 58.635 45.455 0.00 0.00 36.16 2.74
573 606 6.440436 CAAAAATTTGCCCCAAAAAGATCAG 58.560 36.000 0.00 0.00 36.90 2.90
675 718 8.163408 ACATGTATGCATATTTGGTAGTACCAT 58.837 33.333 22.68 11.51 39.93 3.55
691 734 6.294361 AGTAAACTACTGGACATGTATGCA 57.706 37.500 0.00 0.00 37.69 3.96
721 767 2.703416 TCTGACTTGGTCATGCATGTC 58.297 47.619 25.43 19.92 41.94 3.06
785 831 4.276183 CGACTAGCTACAGCATTAGGAAGA 59.724 45.833 3.70 0.00 45.16 2.87
799 845 2.621998 GGTTGAGTATGCCGACTAGCTA 59.378 50.000 0.00 0.00 0.00 3.32
853 910 1.193874 GTCGGTAAAGGTTGCGAACAG 59.806 52.381 0.00 0.00 0.00 3.16
871 928 9.015367 TGTGTATATATAGGAGCAGAAAGAGTC 57.985 37.037 0.00 0.00 0.00 3.36
930 988 5.221541 TGTTTGTGGGTTGTGTTTTCTTTCT 60.222 36.000 0.00 0.00 0.00 2.52
988 1050 0.966179 GAGGCCATTCGGGTTTTTGT 59.034 50.000 5.01 0.00 39.65 2.83
1206 1309 5.906073 AGGCGCATAATAAAAAGAAGCATT 58.094 33.333 10.83 0.00 0.00 3.56
1226 1331 3.489738 CCATTAACAAGCACTGCATAGGC 60.490 47.826 3.30 0.00 41.68 3.93
1481 1592 3.521126 ACATAGAGTGTCCCTTCAAGCAT 59.479 43.478 0.00 0.00 35.77 3.79
1702 1813 2.742053 CAAAACATCGTCCGAGATTGGT 59.258 45.455 0.00 0.00 0.00 3.67
1966 2082 9.326413 CGGTTAGGTTTGATTTGTAGATAAGAT 57.674 33.333 0.00 0.00 0.00 2.40
1988 2104 5.010617 AGCCATTGTTTTCATAAGAACGGTT 59.989 36.000 0.00 0.00 32.39 4.44
1989 2105 4.522789 AGCCATTGTTTTCATAAGAACGGT 59.477 37.500 0.00 0.00 32.39 4.83
1991 2107 6.128007 ACCTAGCCATTGTTTTCATAAGAACG 60.128 38.462 0.00 0.00 32.39 3.95
2008 2124 3.073798 TGGAACAGATCAAAACCTAGCCA 59.926 43.478 0.00 0.00 0.00 4.75
2034 2150 4.039366 CCCTGCCTAGTCCTCAACTATTAC 59.961 50.000 0.00 0.00 39.73 1.89
2046 2162 3.164977 GGGGAGCCCTGCCTAGTC 61.165 72.222 5.38 0.00 41.34 2.59
2098 2214 0.239879 TCCAAATGAAAAGTCGCCGC 59.760 50.000 0.00 0.00 0.00 6.53
2102 2218 5.627499 TCCATTCTCCAAATGAAAAGTCG 57.373 39.130 0.00 0.00 0.00 4.18
2118 2234 6.656314 TTGTACATCGTATGTGTTCCATTC 57.344 37.500 0.00 0.00 44.60 2.67
2133 2249 5.722021 AGGGTGGATTTGTTTTGTACATC 57.278 39.130 0.00 0.00 36.44 3.06
2154 2271 2.959465 AAGTCCTTCCCACTCCAAAG 57.041 50.000 0.00 0.00 0.00 2.77
2181 2298 1.367346 TCCCATGCTACCAAAGGTGA 58.633 50.000 0.00 0.00 36.19 4.02
2191 2313 5.514834 GGCCTACAGATAAAATCCCATGCTA 60.515 44.000 0.00 0.00 0.00 3.49
2192 2314 4.401925 GCCTACAGATAAAATCCCATGCT 58.598 43.478 0.00 0.00 0.00 3.79
2196 2318 4.871871 TTGGCCTACAGATAAAATCCCA 57.128 40.909 3.32 0.00 0.00 4.37
2197 2319 5.891551 TCTTTTGGCCTACAGATAAAATCCC 59.108 40.000 3.32 0.00 0.00 3.85
2209 2331 4.489306 ACACCTCTATCTTTTGGCCTAC 57.511 45.455 3.32 0.00 0.00 3.18
2229 2351 9.634021 AGAGGGGAGATTGATAATTCTAAAAAC 57.366 33.333 0.00 0.00 0.00 2.43
2230 2352 9.853177 GAGAGGGGAGATTGATAATTCTAAAAA 57.147 33.333 0.00 0.00 0.00 1.94
2234 2356 8.567198 TTTGAGAGGGGAGATTGATAATTCTA 57.433 34.615 0.00 0.00 0.00 2.10
2251 2373 4.114794 CAAAAGGCAGTTGTTTTGAGAGG 58.885 43.478 3.55 0.00 43.42 3.69
2253 2375 4.799564 ACAAAAGGCAGTTGTTTTGAGA 57.200 36.364 13.71 0.00 43.42 3.27
2347 2469 2.912956 TCCTCAGTTGGCAAGATACCTT 59.087 45.455 0.00 0.00 0.00 3.50
2348 2470 2.551270 TCCTCAGTTGGCAAGATACCT 58.449 47.619 0.00 0.00 0.00 3.08
2349 2471 3.135530 AGATCCTCAGTTGGCAAGATACC 59.864 47.826 0.00 0.00 0.00 2.73
2350 2472 4.141846 TGAGATCCTCAGTTGGCAAGATAC 60.142 45.833 0.00 0.00 35.39 2.24
2351 2473 4.033009 TGAGATCCTCAGTTGGCAAGATA 58.967 43.478 0.00 0.00 35.39 1.98
2352 2474 2.842496 TGAGATCCTCAGTTGGCAAGAT 59.158 45.455 0.00 0.00 35.39 2.40
2353 2475 2.259917 TGAGATCCTCAGTTGGCAAGA 58.740 47.619 0.00 0.00 35.39 3.02
2354 2476 2.775911 TGAGATCCTCAGTTGGCAAG 57.224 50.000 0.00 0.00 35.39 4.01
2355 2477 3.726557 AATGAGATCCTCAGTTGGCAA 57.273 42.857 0.00 0.00 44.08 4.52
2356 2478 3.726557 AAATGAGATCCTCAGTTGGCA 57.273 42.857 8.58 0.00 45.09 4.92
2361 2483 7.205515 AGATTAACCAAATGAGATCCTCAGT 57.794 36.000 2.99 0.00 44.08 3.41
2362 2484 6.709846 GGAGATTAACCAAATGAGATCCTCAG 59.290 42.308 2.99 0.00 44.08 3.35
2363 2485 6.158520 TGGAGATTAACCAAATGAGATCCTCA 59.841 38.462 0.00 0.00 38.44 3.86
2364 2486 6.484977 GTGGAGATTAACCAAATGAGATCCTC 59.515 42.308 0.00 0.00 39.22 3.71
2365 2487 6.069440 TGTGGAGATTAACCAAATGAGATCCT 60.069 38.462 0.00 0.00 39.22 3.24
2366 2488 6.038714 GTGTGGAGATTAACCAAATGAGATCC 59.961 42.308 0.00 0.00 39.22 3.36
2367 2489 6.238211 CGTGTGGAGATTAACCAAATGAGATC 60.238 42.308 0.00 0.00 39.22 2.75
2368 2490 5.586243 CGTGTGGAGATTAACCAAATGAGAT 59.414 40.000 0.00 0.00 39.22 2.75
2369 2491 4.935205 CGTGTGGAGATTAACCAAATGAGA 59.065 41.667 0.00 0.00 39.22 3.27
2370 2492 4.935205 TCGTGTGGAGATTAACCAAATGAG 59.065 41.667 0.00 0.00 36.21 2.90
2371 2493 4.900684 TCGTGTGGAGATTAACCAAATGA 58.099 39.130 0.00 0.00 38.05 2.57
2372 2494 5.818136 ATCGTGTGGAGATTAACCAAATG 57.182 39.130 0.00 0.00 39.22 2.32
2373 2495 7.931578 TTAATCGTGTGGAGATTAACCAAAT 57.068 32.000 7.15 0.00 42.32 2.32
2374 2496 7.931578 ATTAATCGTGTGGAGATTAACCAAA 57.068 32.000 11.92 0.00 46.69 3.28
2375 2497 7.931578 AATTAATCGTGTGGAGATTAACCAA 57.068 32.000 11.92 0.00 46.69 3.67
2376 2498 9.268268 GATAATTAATCGTGTGGAGATTAACCA 57.732 33.333 11.92 5.49 46.69 3.67
2394 2516 9.823647 AGAAAGAGCAAGAAGATCGATAATTAA 57.176 29.630 0.00 0.00 37.82 1.40
2396 2518 9.474920 CTAGAAAGAGCAAGAAGATCGATAATT 57.525 33.333 0.00 0.00 37.82 1.40
2397 2519 8.637986 ACTAGAAAGAGCAAGAAGATCGATAAT 58.362 33.333 0.00 0.00 37.82 1.28
2398 2520 7.918033 CACTAGAAAGAGCAAGAAGATCGATAA 59.082 37.037 0.00 0.00 37.82 1.75
2399 2521 7.421599 CACTAGAAAGAGCAAGAAGATCGATA 58.578 38.462 0.00 0.00 37.82 2.92
2400 2522 6.272318 CACTAGAAAGAGCAAGAAGATCGAT 58.728 40.000 0.00 0.00 37.82 3.59
2401 2523 5.393569 CCACTAGAAAGAGCAAGAAGATCGA 60.394 44.000 0.00 0.00 37.82 3.59
2402 2524 4.803088 CCACTAGAAAGAGCAAGAAGATCG 59.197 45.833 0.00 0.00 37.82 3.69
2403 2525 5.971763 TCCACTAGAAAGAGCAAGAAGATC 58.028 41.667 0.00 0.00 0.00 2.75
2404 2526 5.104982 CCTCCACTAGAAAGAGCAAGAAGAT 60.105 44.000 0.00 0.00 0.00 2.40
2405 2527 4.221703 CCTCCACTAGAAAGAGCAAGAAGA 59.778 45.833 0.00 0.00 0.00 2.87
2406 2528 4.502962 CCTCCACTAGAAAGAGCAAGAAG 58.497 47.826 0.00 0.00 0.00 2.85
2407 2529 3.261897 CCCTCCACTAGAAAGAGCAAGAA 59.738 47.826 0.00 0.00 0.00 2.52
2408 2530 2.834549 CCCTCCACTAGAAAGAGCAAGA 59.165 50.000 0.00 0.00 0.00 3.02
2409 2531 2.834549 TCCCTCCACTAGAAAGAGCAAG 59.165 50.000 0.00 0.00 0.00 4.01
2410 2532 2.567615 GTCCCTCCACTAGAAAGAGCAA 59.432 50.000 0.00 0.00 0.00 3.91
2411 2533 2.180276 GTCCCTCCACTAGAAAGAGCA 58.820 52.381 0.00 0.00 0.00 4.26
2412 2534 2.462723 AGTCCCTCCACTAGAAAGAGC 58.537 52.381 0.00 0.00 0.00 4.09
2413 2535 3.955551 GGTAGTCCCTCCACTAGAAAGAG 59.044 52.174 0.00 0.00 29.14 2.85
2414 2536 3.596956 AGGTAGTCCCTCCACTAGAAAGA 59.403 47.826 0.00 0.00 40.71 2.52
2415 2537 3.983821 AGGTAGTCCCTCCACTAGAAAG 58.016 50.000 0.00 0.00 40.71 2.62
2427 2549 8.570068 TGTTTGTAATAATTTGAGGTAGTCCC 57.430 34.615 0.00 0.00 0.00 4.46
2445 2567 9.851686 AGGAAGCATGATCTTTATATGTTTGTA 57.148 29.630 0.00 0.00 0.00 2.41
2446 2568 8.627403 CAGGAAGCATGATCTTTATATGTTTGT 58.373 33.333 0.00 0.00 0.00 2.83
2447 2569 8.627403 ACAGGAAGCATGATCTTTATATGTTTG 58.373 33.333 0.00 0.00 0.00 2.93
2448 2570 8.757982 ACAGGAAGCATGATCTTTATATGTTT 57.242 30.769 0.00 0.00 0.00 2.83
2449 2571 8.757982 AACAGGAAGCATGATCTTTATATGTT 57.242 30.769 0.00 0.00 0.00 2.71
2450 2572 7.446625 GGAACAGGAAGCATGATCTTTATATGT 59.553 37.037 0.00 0.00 0.00 2.29
2451 2573 7.446319 TGGAACAGGAAGCATGATCTTTATATG 59.554 37.037 0.00 0.00 0.00 1.78
2452 2574 7.520798 TGGAACAGGAAGCATGATCTTTATAT 58.479 34.615 0.00 0.00 0.00 0.86
2453 2575 6.899089 TGGAACAGGAAGCATGATCTTTATA 58.101 36.000 0.00 0.00 0.00 0.98
2454 2576 5.759059 TGGAACAGGAAGCATGATCTTTAT 58.241 37.500 0.00 0.00 0.00 1.40
2455 2577 5.178096 TGGAACAGGAAGCATGATCTTTA 57.822 39.130 0.00 0.00 0.00 1.85
2456 2578 4.038271 TGGAACAGGAAGCATGATCTTT 57.962 40.909 0.00 0.00 0.00 2.52
2457 2579 3.726557 TGGAACAGGAAGCATGATCTT 57.273 42.857 0.00 0.00 0.00 2.40
2470 2592 6.671646 AGTGAAACCACCTTGAATGGAACAG 61.672 44.000 0.00 0.00 39.73 3.16
2471 2593 4.873945 AGTGAAACCACCTTGAATGGAACA 60.874 41.667 0.00 0.00 40.84 3.18
2472 2594 3.636764 AGTGAAACCACCTTGAATGGAAC 59.363 43.478 0.00 0.00 39.87 3.62
2473 2595 3.909732 AGTGAAACCACCTTGAATGGAA 58.090 40.909 0.00 0.00 39.87 3.53
2474 2596 3.593442 AGTGAAACCACCTTGAATGGA 57.407 42.857 0.00 0.00 39.87 3.41
2475 2597 4.158394 CCATAGTGAAACCACCTTGAATGG 59.842 45.833 0.00 0.00 43.43 3.16
2476 2598 5.009631 TCCATAGTGAAACCACCTTGAATG 58.990 41.667 0.00 0.00 37.80 2.67
2477 2599 5.255397 TCCATAGTGAAACCACCTTGAAT 57.745 39.130 0.00 0.00 37.80 2.57
2478 2600 4.715534 TCCATAGTGAAACCACCTTGAA 57.284 40.909 0.00 0.00 37.80 2.69
2479 2601 4.715534 TTCCATAGTGAAACCACCTTGA 57.284 40.909 0.00 0.00 37.80 3.02
2480 2602 5.982890 ATTTCCATAGTGAAACCACCTTG 57.017 39.130 0.00 0.00 37.08 3.61
2481 2603 6.239572 CCAAATTTCCATAGTGAAACCACCTT 60.240 38.462 0.00 0.00 37.08 3.50
2482 2604 5.245977 CCAAATTTCCATAGTGAAACCACCT 59.754 40.000 0.00 0.00 37.08 4.00
2483 2605 5.245075 TCCAAATTTCCATAGTGAAACCACC 59.755 40.000 0.00 0.00 37.08 4.61
2484 2606 6.339587 TCCAAATTTCCATAGTGAAACCAC 57.660 37.500 0.00 0.00 37.08 4.16
2485 2607 6.985653 TTCCAAATTTCCATAGTGAAACCA 57.014 33.333 0.00 0.00 37.08 3.67
2486 2608 7.610865 TCATTCCAAATTTCCATAGTGAAACC 58.389 34.615 0.00 0.00 37.08 3.27
2501 2623 9.370930 TGGAGATTGCTAATTATCATTCCAAAT 57.629 29.630 11.93 0.00 28.06 2.32
2502 2624 8.765488 TGGAGATTGCTAATTATCATTCCAAA 57.235 30.769 11.93 0.00 28.06 3.28
2503 2625 8.765488 TTGGAGATTGCTAATTATCATTCCAA 57.235 30.769 17.53 17.53 34.94 3.53
2504 2626 8.632679 GTTTGGAGATTGCTAATTATCATTCCA 58.367 33.333 10.95 10.95 0.00 3.53
2505 2627 8.632679 TGTTTGGAGATTGCTAATTATCATTCC 58.367 33.333 7.31 7.43 0.00 3.01
2506 2628 9.674824 CTGTTTGGAGATTGCTAATTATCATTC 57.325 33.333 3.96 3.96 0.00 2.67
2507 2629 9.412460 TCTGTTTGGAGATTGCTAATTATCATT 57.588 29.630 0.00 0.00 0.00 2.57
2508 2630 8.985315 TCTGTTTGGAGATTGCTAATTATCAT 57.015 30.769 0.00 0.00 0.00 2.45
2509 2631 8.806429 TTCTGTTTGGAGATTGCTAATTATCA 57.194 30.769 0.00 0.00 0.00 2.15
2510 2632 8.348507 CCTTCTGTTTGGAGATTGCTAATTATC 58.651 37.037 0.00 0.00 0.00 1.75
2511 2633 7.201857 GCCTTCTGTTTGGAGATTGCTAATTAT 60.202 37.037 0.00 0.00 0.00 1.28
2512 2634 6.095440 GCCTTCTGTTTGGAGATTGCTAATTA 59.905 38.462 0.00 0.00 0.00 1.40
2513 2635 5.105595 GCCTTCTGTTTGGAGATTGCTAATT 60.106 40.000 0.00 0.00 0.00 1.40
2514 2636 4.400567 GCCTTCTGTTTGGAGATTGCTAAT 59.599 41.667 0.00 0.00 0.00 1.73
2515 2637 3.758554 GCCTTCTGTTTGGAGATTGCTAA 59.241 43.478 0.00 0.00 0.00 3.09
2516 2638 3.244875 TGCCTTCTGTTTGGAGATTGCTA 60.245 43.478 0.00 0.00 0.00 3.49
2517 2639 2.165998 GCCTTCTGTTTGGAGATTGCT 58.834 47.619 0.00 0.00 0.00 3.91
2518 2640 1.888512 TGCCTTCTGTTTGGAGATTGC 59.111 47.619 0.00 0.00 0.00 3.56
2519 2641 3.571401 ACTTGCCTTCTGTTTGGAGATTG 59.429 43.478 0.00 0.00 0.00 2.67
2520 2642 3.823304 GACTTGCCTTCTGTTTGGAGATT 59.177 43.478 0.00 0.00 0.00 2.40
2521 2643 3.073650 AGACTTGCCTTCTGTTTGGAGAT 59.926 43.478 0.00 0.00 0.00 2.75
2522 2644 2.439507 AGACTTGCCTTCTGTTTGGAGA 59.560 45.455 0.00 0.00 0.00 3.71
2523 2645 2.856222 AGACTTGCCTTCTGTTTGGAG 58.144 47.619 0.00 0.00 0.00 3.86
2524 2646 3.807209 GCTAGACTTGCCTTCTGTTTGGA 60.807 47.826 0.00 0.00 0.00 3.53
2525 2647 2.485814 GCTAGACTTGCCTTCTGTTTGG 59.514 50.000 0.00 0.00 0.00 3.28
2526 2648 2.485814 GGCTAGACTTGCCTTCTGTTTG 59.514 50.000 19.25 0.00 46.38 2.93
2527 2649 2.784347 GGCTAGACTTGCCTTCTGTTT 58.216 47.619 19.25 0.00 46.38 2.83
2528 2650 2.481289 GGCTAGACTTGCCTTCTGTT 57.519 50.000 19.25 0.00 46.38 3.16
2536 2658 1.901650 GCACGTGTGGCTAGACTTGC 61.902 60.000 18.38 12.55 37.98 4.01
2537 2659 0.599991 TGCACGTGTGGCTAGACTTG 60.600 55.000 18.38 0.00 0.00 3.16
2538 2660 0.321671 ATGCACGTGTGGCTAGACTT 59.678 50.000 18.38 0.00 0.00 3.01
2539 2661 0.321671 AATGCACGTGTGGCTAGACT 59.678 50.000 18.38 0.00 0.00 3.24
2540 2662 0.721718 GAATGCACGTGTGGCTAGAC 59.278 55.000 18.38 0.00 0.00 2.59
2541 2663 0.608130 AGAATGCACGTGTGGCTAGA 59.392 50.000 18.38 0.00 0.00 2.43
2542 2664 1.442769 AAGAATGCACGTGTGGCTAG 58.557 50.000 18.38 0.00 0.00 3.42
2543 2665 1.804151 GAAAGAATGCACGTGTGGCTA 59.196 47.619 18.38 0.00 0.00 3.93
2544 2666 0.593128 GAAAGAATGCACGTGTGGCT 59.407 50.000 18.38 6.96 0.00 4.75
2545 2667 0.593128 AGAAAGAATGCACGTGTGGC 59.407 50.000 18.38 3.00 0.00 5.01
2546 2668 2.290367 TGAAGAAAGAATGCACGTGTGG 59.710 45.455 18.38 0.00 0.00 4.17
2547 2669 3.248363 TCTGAAGAAAGAATGCACGTGTG 59.752 43.478 18.38 0.00 0.00 3.82
2548 2670 3.466836 TCTGAAGAAAGAATGCACGTGT 58.533 40.909 18.38 0.00 0.00 4.49
2549 2671 3.742882 TCTCTGAAGAAAGAATGCACGTG 59.257 43.478 12.28 12.28 0.00 4.49
2550 2672 3.995199 TCTCTGAAGAAAGAATGCACGT 58.005 40.909 0.00 0.00 0.00 4.49
2551 2673 4.628766 TGATCTCTGAAGAAAGAATGCACG 59.371 41.667 0.00 0.00 34.49 5.34
2552 2674 6.315642 TGATGATCTCTGAAGAAAGAATGCAC 59.684 38.462 0.00 0.00 34.49 4.57
2553 2675 6.315642 GTGATGATCTCTGAAGAAAGAATGCA 59.684 38.462 0.00 0.00 34.49 3.96
2554 2676 6.315642 TGTGATGATCTCTGAAGAAAGAATGC 59.684 38.462 0.00 0.00 34.49 3.56
2555 2677 7.845066 TGTGATGATCTCTGAAGAAAGAATG 57.155 36.000 0.00 0.00 34.49 2.67
2556 2678 9.463902 AAATGTGATGATCTCTGAAGAAAGAAT 57.536 29.630 0.00 0.00 34.49 2.40
2557 2679 8.859236 AAATGTGATGATCTCTGAAGAAAGAA 57.141 30.769 0.00 0.00 34.49 2.52
2558 2680 8.319881 AGAAATGTGATGATCTCTGAAGAAAGA 58.680 33.333 0.00 0.00 34.49 2.52
2559 2681 8.495361 AGAAATGTGATGATCTCTGAAGAAAG 57.505 34.615 0.00 0.00 34.49 2.62
2560 2682 8.859236 AAGAAATGTGATGATCTCTGAAGAAA 57.141 30.769 0.00 0.00 34.49 2.52
2561 2683 8.727910 CAAAGAAATGTGATGATCTCTGAAGAA 58.272 33.333 0.00 0.00 34.49 2.52
2562 2684 7.148289 GCAAAGAAATGTGATGATCTCTGAAGA 60.148 37.037 0.00 0.00 35.54 2.87
2563 2685 6.967767 GCAAAGAAATGTGATGATCTCTGAAG 59.032 38.462 0.00 0.00 0.00 3.02
2564 2686 6.431852 TGCAAAGAAATGTGATGATCTCTGAA 59.568 34.615 0.00 0.00 0.00 3.02
2565 2687 5.941647 TGCAAAGAAATGTGATGATCTCTGA 59.058 36.000 0.00 0.00 0.00 3.27
2566 2688 6.190954 TGCAAAGAAATGTGATGATCTCTG 57.809 37.500 0.00 0.00 0.00 3.35
2567 2689 6.680625 GCATGCAAAGAAATGTGATGATCTCT 60.681 38.462 14.21 0.00 0.00 3.10
2568 2690 5.459107 GCATGCAAAGAAATGTGATGATCTC 59.541 40.000 14.21 0.00 0.00 2.75
2569 2691 5.348986 GCATGCAAAGAAATGTGATGATCT 58.651 37.500 14.21 0.00 0.00 2.75
2570 2692 4.506654 GGCATGCAAAGAAATGTGATGATC 59.493 41.667 21.36 0.00 0.00 2.92
2571 2693 4.081365 TGGCATGCAAAGAAATGTGATGAT 60.081 37.500 21.36 0.00 0.00 2.45
2572 2694 3.258622 TGGCATGCAAAGAAATGTGATGA 59.741 39.130 21.36 0.00 0.00 2.92
2573 2695 3.591023 TGGCATGCAAAGAAATGTGATG 58.409 40.909 21.36 0.00 0.00 3.07
2574 2696 3.965379 TGGCATGCAAAGAAATGTGAT 57.035 38.095 21.36 0.00 0.00 3.06
2575 2697 3.258622 TCATGGCATGCAAAGAAATGTGA 59.741 39.130 22.56 3.93 0.00 3.58
2576 2698 3.591023 TCATGGCATGCAAAGAAATGTG 58.409 40.909 22.56 1.17 0.00 3.21
2577 2699 3.857052 CTCATGGCATGCAAAGAAATGT 58.143 40.909 22.56 0.00 0.00 2.71
2578 2700 2.607635 GCTCATGGCATGCAAAGAAATG 59.392 45.455 22.56 12.20 41.35 2.32
2579 2701 2.901249 GCTCATGGCATGCAAAGAAAT 58.099 42.857 22.56 0.00 41.35 2.17
2580 2702 2.373540 GCTCATGGCATGCAAAGAAA 57.626 45.000 22.56 2.59 41.35 2.52
2594 2716 0.994247 TTGTCCTCCATGGTGCTCAT 59.006 50.000 12.58 0.00 37.07 2.90
2595 2717 0.994247 ATTGTCCTCCATGGTGCTCA 59.006 50.000 12.58 8.19 37.07 4.26
2596 2718 1.386533 CATTGTCCTCCATGGTGCTC 58.613 55.000 12.58 5.66 37.07 4.26
2597 2719 0.682209 GCATTGTCCTCCATGGTGCT 60.682 55.000 12.58 0.00 37.07 4.40
2598 2720 0.682209 AGCATTGTCCTCCATGGTGC 60.682 55.000 12.58 12.32 37.07 5.01
2599 2721 1.100510 CAGCATTGTCCTCCATGGTG 58.899 55.000 12.58 9.53 36.42 4.17
2600 2722 0.994247 TCAGCATTGTCCTCCATGGT 59.006 50.000 12.58 0.00 37.07 3.55
2601 2723 1.386533 GTCAGCATTGTCCTCCATGG 58.613 55.000 4.97 4.97 37.10 3.66
2602 2724 1.340308 TGGTCAGCATTGTCCTCCATG 60.340 52.381 0.00 0.00 34.14 3.66
2603 2725 0.994247 TGGTCAGCATTGTCCTCCAT 59.006 50.000 0.00 0.00 34.14 3.41
2604 2726 0.994247 ATGGTCAGCATTGTCCTCCA 59.006 50.000 0.00 0.00 34.14 3.86
2605 2727 2.134789 AATGGTCAGCATTGTCCTCC 57.865 50.000 0.00 0.00 34.14 4.30
2606 2728 3.507233 TGAAAATGGTCAGCATTGTCCTC 59.493 43.478 15.76 5.96 34.14 3.71
2607 2729 3.499338 TGAAAATGGTCAGCATTGTCCT 58.501 40.909 15.76 0.00 34.14 3.85
2608 2730 3.940209 TGAAAATGGTCAGCATTGTCC 57.060 42.857 15.76 3.80 33.69 4.02
2609 2731 5.390145 GCAAATGAAAATGGTCAGCATTGTC 60.390 40.000 12.22 12.22 30.35 3.18
2610 2732 4.453136 GCAAATGAAAATGGTCAGCATTGT 59.547 37.500 2.03 0.00 30.35 2.71
2611 2733 4.142773 GGCAAATGAAAATGGTCAGCATTG 60.143 41.667 2.03 0.00 30.35 2.82
2612 2734 4.004982 GGCAAATGAAAATGGTCAGCATT 58.995 39.130 0.00 0.00 0.00 3.56
2613 2735 3.008157 TGGCAAATGAAAATGGTCAGCAT 59.992 39.130 0.00 0.00 0.00 3.79
2614 2736 2.367894 TGGCAAATGAAAATGGTCAGCA 59.632 40.909 0.00 0.00 0.00 4.41
2615 2737 2.738314 GTGGCAAATGAAAATGGTCAGC 59.262 45.455 0.00 0.00 0.00 4.26
2616 2738 4.261578 AGTGGCAAATGAAAATGGTCAG 57.738 40.909 0.00 0.00 0.00 3.51
2617 2739 4.686191 AAGTGGCAAATGAAAATGGTCA 57.314 36.364 0.00 0.00 0.00 4.02
2618 2740 5.055812 TGAAAGTGGCAAATGAAAATGGTC 58.944 37.500 0.00 0.00 0.00 4.02
2619 2741 5.033589 TGAAAGTGGCAAATGAAAATGGT 57.966 34.783 0.00 0.00 0.00 3.55
2620 2742 6.563222 ATTGAAAGTGGCAAATGAAAATGG 57.437 33.333 0.00 0.00 0.00 3.16
2621 2743 8.537049 TCTATTGAAAGTGGCAAATGAAAATG 57.463 30.769 0.00 0.00 0.00 2.32
2622 2744 9.211485 CTTCTATTGAAAGTGGCAAATGAAAAT 57.789 29.630 0.00 0.00 0.00 1.82
2623 2745 7.171337 GCTTCTATTGAAAGTGGCAAATGAAAA 59.829 33.333 0.00 0.00 0.00 2.29
2624 2746 6.646240 GCTTCTATTGAAAGTGGCAAATGAAA 59.354 34.615 0.00 0.00 0.00 2.69
2625 2747 6.158598 GCTTCTATTGAAAGTGGCAAATGAA 58.841 36.000 0.00 0.00 0.00 2.57
2626 2748 5.243507 TGCTTCTATTGAAAGTGGCAAATGA 59.756 36.000 0.00 0.00 0.00 2.57
2627 2749 5.472148 TGCTTCTATTGAAAGTGGCAAATG 58.528 37.500 0.00 0.00 0.00 2.32
2628 2750 5.726980 TGCTTCTATTGAAAGTGGCAAAT 57.273 34.783 0.00 0.00 0.00 2.32
2629 2751 5.726980 ATGCTTCTATTGAAAGTGGCAAA 57.273 34.783 5.84 0.00 32.43 3.68
2630 2752 5.726980 AATGCTTCTATTGAAAGTGGCAA 57.273 34.783 5.84 0.00 32.43 4.52
2631 2753 5.010922 ACAAATGCTTCTATTGAAAGTGGCA 59.989 36.000 4.54 4.54 32.89 4.92
2632 2754 5.473039 ACAAATGCTTCTATTGAAAGTGGC 58.527 37.500 0.00 0.00 0.00 5.01
2633 2755 7.373493 AGAACAAATGCTTCTATTGAAAGTGG 58.627 34.615 0.00 0.00 0.00 4.00
2640 2762 9.512435 CCTGAAATAGAACAAATGCTTCTATTG 57.488 33.333 19.72 13.10 44.66 1.90
2641 2763 9.247861 ACCTGAAATAGAACAAATGCTTCTATT 57.752 29.630 16.54 16.54 46.20 1.73
2642 2764 8.680903 CACCTGAAATAGAACAAATGCTTCTAT 58.319 33.333 10.09 10.09 40.98 1.98
2643 2765 7.882791 TCACCTGAAATAGAACAAATGCTTCTA 59.117 33.333 7.45 7.45 35.25 2.10
2644 2766 6.716628 TCACCTGAAATAGAACAAATGCTTCT 59.283 34.615 0.00 0.00 0.00 2.85
2645 2767 6.913170 TCACCTGAAATAGAACAAATGCTTC 58.087 36.000 0.00 0.00 0.00 3.86
2646 2768 6.899393 TCACCTGAAATAGAACAAATGCTT 57.101 33.333 0.00 0.00 0.00 3.91
2647 2769 6.660521 TCATCACCTGAAATAGAACAAATGCT 59.339 34.615 0.00 0.00 0.00 3.79
2648 2770 6.855836 TCATCACCTGAAATAGAACAAATGC 58.144 36.000 0.00 0.00 0.00 3.56
2653 2775 8.623903 GCATTATTCATCACCTGAAATAGAACA 58.376 33.333 0.00 0.00 46.62 3.18
2654 2776 8.623903 TGCATTATTCATCACCTGAAATAGAAC 58.376 33.333 0.00 0.00 46.62 3.01
2655 2777 8.750515 TGCATTATTCATCACCTGAAATAGAA 57.249 30.769 0.00 0.00 46.62 2.10
2656 2778 8.929260 ATGCATTATTCATCACCTGAAATAGA 57.071 30.769 0.00 0.00 46.62 1.98
2657 2779 9.406828 CAATGCATTATTCATCACCTGAAATAG 57.593 33.333 12.53 0.00 46.62 1.73
2658 2780 7.868922 GCAATGCATTATTCATCACCTGAAATA 59.131 33.333 12.53 0.00 46.62 1.40
2659 2781 6.704493 GCAATGCATTATTCATCACCTGAAAT 59.296 34.615 12.53 0.00 46.62 2.17
2660 2782 6.044046 GCAATGCATTATTCATCACCTGAAA 58.956 36.000 12.53 0.00 46.62 2.69
2661 2783 5.127356 TGCAATGCATTATTCATCACCTGAA 59.873 36.000 12.53 0.00 40.00 3.02
2662 2784 4.645588 TGCAATGCATTATTCATCACCTGA 59.354 37.500 12.53 0.00 31.71 3.86
2663 2785 4.939271 TGCAATGCATTATTCATCACCTG 58.061 39.130 12.53 0.00 31.71 4.00
2680 2802 7.825270 TCATTAGAAAATTCCAAAGCATGCAAT 59.175 29.630 21.98 7.45 0.00 3.56
2681 2803 7.160049 TCATTAGAAAATTCCAAAGCATGCAA 58.840 30.769 21.98 5.01 0.00 4.08
2682 2804 6.699366 TCATTAGAAAATTCCAAAGCATGCA 58.301 32.000 21.98 0.00 0.00 3.96
2683 2805 6.238022 GCTCATTAGAAAATTCCAAAGCATGC 60.238 38.462 10.51 10.51 0.00 4.06
2684 2806 6.814644 TGCTCATTAGAAAATTCCAAAGCATG 59.185 34.615 0.00 0.00 0.00 4.06
2685 2807 6.938507 TGCTCATTAGAAAATTCCAAAGCAT 58.061 32.000 0.00 0.00 0.00 3.79
2686 2808 6.343716 TGCTCATTAGAAAATTCCAAAGCA 57.656 33.333 0.00 0.00 0.00 3.91
2687 2809 7.037438 TCATGCTCATTAGAAAATTCCAAAGC 58.963 34.615 0.00 0.00 0.00 3.51
2688 2810 9.595823 AATCATGCTCATTAGAAAATTCCAAAG 57.404 29.630 0.00 0.00 0.00 2.77
2689 2811 9.947433 AAATCATGCTCATTAGAAAATTCCAAA 57.053 25.926 0.00 0.00 0.00 3.28
2690 2812 9.947433 AAAATCATGCTCATTAGAAAATTCCAA 57.053 25.926 0.00 0.00 0.00 3.53
2691 2813 9.947433 AAAAATCATGCTCATTAGAAAATTCCA 57.053 25.926 0.00 0.00 0.00 3.53
2694 2816 8.671028 GCCAAAAATCATGCTCATTAGAAAATT 58.329 29.630 0.00 0.00 0.00 1.82
2695 2817 7.825270 TGCCAAAAATCATGCTCATTAGAAAAT 59.175 29.630 0.00 0.00 0.00 1.82
2696 2818 7.160049 TGCCAAAAATCATGCTCATTAGAAAA 58.840 30.769 0.00 0.00 0.00 2.29
2697 2819 6.699366 TGCCAAAAATCATGCTCATTAGAAA 58.301 32.000 0.00 0.00 0.00 2.52
2698 2820 6.283544 TGCCAAAAATCATGCTCATTAGAA 57.716 33.333 0.00 0.00 0.00 2.10
2699 2821 5.918426 TGCCAAAAATCATGCTCATTAGA 57.082 34.783 0.00 0.00 0.00 2.10
2700 2822 6.971527 TTTGCCAAAAATCATGCTCATTAG 57.028 33.333 0.00 0.00 0.00 1.73
2701 2823 6.539464 GGATTTGCCAAAAATCATGCTCATTA 59.461 34.615 11.68 0.00 38.15 1.90
2702 2824 5.355910 GGATTTGCCAAAAATCATGCTCATT 59.644 36.000 11.68 0.00 38.15 2.57
2703 2825 4.879545 GGATTTGCCAAAAATCATGCTCAT 59.120 37.500 11.68 0.00 38.15 2.90
2704 2826 4.255301 GGATTTGCCAAAAATCATGCTCA 58.745 39.130 11.68 0.00 38.15 4.26
2705 2827 3.624410 GGGATTTGCCAAAAATCATGCTC 59.376 43.478 11.68 0.00 38.15 4.26
2706 2828 3.264964 AGGGATTTGCCAAAAATCATGCT 59.735 39.130 11.68 0.00 38.15 3.79
2707 2829 3.613030 AGGGATTTGCCAAAAATCATGC 58.387 40.909 11.68 0.00 38.15 4.06
2708 2830 5.093849 AGAGGGATTTGCCAAAAATCATG 57.906 39.130 11.68 0.00 38.15 3.07
2709 2831 5.364735 CCTAGAGGGATTTGCCAAAAATCAT 59.635 40.000 11.68 1.63 38.15 2.45
2710 2832 4.711355 CCTAGAGGGATTTGCCAAAAATCA 59.289 41.667 11.68 0.00 38.15 2.57
2711 2833 4.711846 ACCTAGAGGGATTTGCCAAAAATC 59.288 41.667 0.00 2.82 40.27 2.17
2712 2834 4.467438 CACCTAGAGGGATTTGCCAAAAAT 59.533 41.667 0.00 0.00 40.27 1.82
2713 2835 3.831911 CACCTAGAGGGATTTGCCAAAAA 59.168 43.478 0.00 0.00 40.27 1.94
2714 2836 3.430453 CACCTAGAGGGATTTGCCAAAA 58.570 45.455 0.00 0.00 40.27 2.44
2715 2837 2.883888 GCACCTAGAGGGATTTGCCAAA 60.884 50.000 0.00 0.00 40.27 3.28
2716 2838 1.340991 GCACCTAGAGGGATTTGCCAA 60.341 52.381 0.00 0.00 40.27 4.52
2717 2839 0.255890 GCACCTAGAGGGATTTGCCA 59.744 55.000 0.00 0.00 40.27 4.92
2718 2840 0.255890 TGCACCTAGAGGGATTTGCC 59.744 55.000 0.00 0.00 40.27 4.52
2719 2841 1.065126 AGTGCACCTAGAGGGATTTGC 60.065 52.381 14.63 1.38 40.27 3.68
2720 2842 3.356529 AAGTGCACCTAGAGGGATTTG 57.643 47.619 14.63 0.00 40.27 2.32
2721 2843 3.118223 GCTAAGTGCACCTAGAGGGATTT 60.118 47.826 23.75 6.31 42.31 2.17
2722 2844 2.436173 GCTAAGTGCACCTAGAGGGATT 59.564 50.000 23.75 7.00 42.31 3.01
2723 2845 2.043227 GCTAAGTGCACCTAGAGGGAT 58.957 52.381 23.75 0.00 42.31 3.85
2724 2846 1.007238 AGCTAAGTGCACCTAGAGGGA 59.993 52.381 23.75 0.00 45.94 4.20
2725 2847 1.490574 AGCTAAGTGCACCTAGAGGG 58.509 55.000 23.75 1.30 45.94 4.30
2726 2848 2.763448 AGAAGCTAAGTGCACCTAGAGG 59.237 50.000 23.75 6.15 45.94 3.69
2727 2849 3.699038 AGAGAAGCTAAGTGCACCTAGAG 59.301 47.826 23.75 12.48 45.94 2.43
2728 2850 3.702792 AGAGAAGCTAAGTGCACCTAGA 58.297 45.455 23.75 2.32 45.94 2.43
2729 2851 4.399618 TGTAGAGAAGCTAAGTGCACCTAG 59.600 45.833 16.73 16.73 45.94 3.02
2730 2852 4.341487 TGTAGAGAAGCTAAGTGCACCTA 58.659 43.478 14.63 3.69 45.94 3.08
2731 2853 3.165875 TGTAGAGAAGCTAAGTGCACCT 58.834 45.455 14.63 2.32 45.94 4.00
2732 2854 3.594603 TGTAGAGAAGCTAAGTGCACC 57.405 47.619 14.63 0.00 45.94 5.01
2733 2855 5.004922 AGATGTAGAGAAGCTAAGTGCAC 57.995 43.478 9.40 9.40 45.94 4.57
2734 2856 6.183360 CCTTAGATGTAGAGAAGCTAAGTGCA 60.183 42.308 0.00 0.00 45.94 4.57
2735 2857 6.183360 ACCTTAGATGTAGAGAAGCTAAGTGC 60.183 42.308 0.00 0.00 37.43 4.40
2736 2858 7.341445 ACCTTAGATGTAGAGAAGCTAAGTG 57.659 40.000 0.00 0.00 37.43 3.16
2741 2863 9.914834 CCTATATACCTTAGATGTAGAGAAGCT 57.085 37.037 0.00 0.00 0.00 3.74
2742 2864 9.689501 ACCTATATACCTTAGATGTAGAGAAGC 57.310 37.037 0.00 0.00 0.00 3.86
2756 2878 9.890915 AGAAGAGATGAGAAACCTATATACCTT 57.109 33.333 0.00 0.00 0.00 3.50
2757 2879 9.890915 AAGAAGAGATGAGAAACCTATATACCT 57.109 33.333 0.00 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.