Multiple sequence alignment - TraesCS7A01G471700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G471700 chr7A 100.000 1277 0 0 915 2191 668042344 668041068 0.000000e+00 2359.0
1 TraesCS7A01G471700 chr7A 100.000 1075 0 0 2450 3524 668040809 668039735 0.000000e+00 1986.0
2 TraesCS7A01G471700 chr7A 100.000 665 0 0 1 665 668043258 668042594 0.000000e+00 1229.0
3 TraesCS7A01G471700 chr7A 73.016 1260 277 49 945 2162 618676320 618677558 5.520000e-103 385.0
4 TraesCS7A01G471700 chr7B 96.386 1079 27 3 2450 3523 639263181 639262110 0.000000e+00 1766.0
5 TraesCS7A01G471700 chr7B 91.525 1003 75 6 915 1909 639265052 639264052 0.000000e+00 1373.0
6 TraesCS7A01G471700 chr7B 95.506 267 12 0 1893 2159 639263650 639263384 9.040000e-116 427.0
7 TraesCS7A01G471700 chr7B 73.457 1134 255 32 1067 2165 580134907 580136029 5.520000e-103 385.0
8 TraesCS7A01G471700 chr7B 87.831 189 17 2 84 266 639265364 639265176 2.130000e-52 217.0
9 TraesCS7A01G471700 chr3B 81.590 1233 199 18 978 2191 643275636 643274413 0.000000e+00 994.0
10 TraesCS7A01G471700 chr3B 80.754 1299 218 19 915 2191 643271611 643270323 0.000000e+00 985.0
11 TraesCS7A01G471700 chr3B 80.849 1295 210 22 922 2184 643305042 643303754 0.000000e+00 983.0
12 TraesCS7A01G471700 chr3B 97.500 40 1 0 2819 2858 526495808 526495847 6.310000e-08 69.4
13 TraesCS7A01G471700 chr3D 81.388 1225 200 18 985 2190 481716224 481715009 0.000000e+00 974.0
14 TraesCS7A01G471700 chr3A 81.011 1227 204 19 985 2191 624863833 624862616 0.000000e+00 948.0
15 TraesCS7A01G471700 chr7D 73.327 1136 248 44 1067 2162 537667923 537669043 5.560000e-98 368.0
16 TraesCS7A01G471700 chr4D 90.000 60 2 3 2819 2878 325105009 325104954 1.360000e-09 75.0
17 TraesCS7A01G471700 chr5B 100.000 38 0 0 2820 2857 635570159 635570122 1.760000e-08 71.3
18 TraesCS7A01G471700 chr2A 87.302 63 6 2 2817 2878 16133892 16133953 1.760000e-08 71.3
19 TraesCS7A01G471700 chr2A 97.500 40 1 0 2819 2858 81785667 81785628 6.310000e-08 69.4
20 TraesCS7A01G471700 chr2A 91.837 49 2 2 2810 2858 572056070 572056116 2.270000e-07 67.6
21 TraesCS7A01G471700 chr2A 97.436 39 1 0 2820 2858 773279374 773279336 2.270000e-07 67.6
22 TraesCS7A01G471700 chr6D 86.885 61 5 2 2820 2878 78270188 78270247 8.170000e-07 65.8
23 TraesCS7A01G471700 chrUn 77.885 104 12 7 437 538 95447735 95447641 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G471700 chr7A 668039735 668043258 3523 True 1858.00 2359 100.000 1 3524 3 chr7A.!!$R1 3523
1 TraesCS7A01G471700 chr7A 618676320 618677558 1238 False 385.00 385 73.016 945 2162 1 chr7A.!!$F1 1217
2 TraesCS7A01G471700 chr7B 639262110 639265364 3254 True 945.75 1766 92.812 84 3523 4 chr7B.!!$R1 3439
3 TraesCS7A01G471700 chr7B 580134907 580136029 1122 False 385.00 385 73.457 1067 2165 1 chr7B.!!$F1 1098
4 TraesCS7A01G471700 chr3B 643270323 643275636 5313 True 989.50 994 81.172 915 2191 2 chr3B.!!$R2 1276
5 TraesCS7A01G471700 chr3B 643303754 643305042 1288 True 983.00 983 80.849 922 2184 1 chr3B.!!$R1 1262
6 TraesCS7A01G471700 chr3D 481715009 481716224 1215 True 974.00 974 81.388 985 2190 1 chr3D.!!$R1 1205
7 TraesCS7A01G471700 chr3A 624862616 624863833 1217 True 948.00 948 81.011 985 2191 1 chr3A.!!$R1 1206
8 TraesCS7A01G471700 chr7D 537667923 537669043 1120 False 368.00 368 73.327 1067 2162 1 chr7D.!!$F1 1095

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 191 0.104304 CGGCTGGTACCTGGTATGAC 59.896 60.0 19.31 5.18 0.0 3.06 F
358 365 0.178990 GGTTCCTCCCTGCTTTGTGT 60.179 55.0 0.00 0.00 0.0 3.72 F
565 572 0.250234 CATTTGAGCTCGGGTCCAGA 59.750 55.0 9.64 0.00 0.0 3.86 F
569 576 0.259065 TGAGCTCGGGTCCAGATACT 59.741 55.0 9.64 0.00 0.0 2.12 F
1935 6495 0.179086 TCTTCGTTGCTGCTGACACA 60.179 50.0 0.00 0.00 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1120 1136 1.002544 GACAAGGTCAAGGGAGGAGTG 59.997 57.143 0.00 0.0 32.09 3.51 R
1262 5374 1.272490 GTCGATTGTGAGGACCACTGA 59.728 52.381 0.00 0.0 45.86 3.41 R
1505 5635 1.549203 ATTGGGTGATGCAAGTGGAC 58.451 50.000 0.00 0.0 0.00 4.02 R
2038 6598 2.168313 TCGCAAGATCAGGCTCATTACA 59.832 45.455 6.99 0.0 45.01 2.41 R
3487 8056 0.606401 CGCCACCTTCACCATCTTGT 60.606 55.000 0.00 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.809496 CCGCAGCTGGCCTCCATT 62.809 66.667 17.12 0.00 40.31 3.16
33 34 2.753043 CGCAGCTGGCCTCCATTT 60.753 61.111 17.12 0.00 40.31 2.32
34 35 2.890371 GCAGCTGGCCTCCATTTG 59.110 61.111 17.12 0.00 36.11 2.32
35 36 1.679977 GCAGCTGGCCTCCATTTGA 60.680 57.895 17.12 0.00 36.11 2.69
36 37 1.252904 GCAGCTGGCCTCCATTTGAA 61.253 55.000 17.12 0.00 36.11 2.69
37 38 0.815734 CAGCTGGCCTCCATTTGAAG 59.184 55.000 5.57 0.00 30.82 3.02
38 39 0.324091 AGCTGGCCTCCATTTGAAGG 60.324 55.000 3.32 0.00 30.82 3.46
39 40 0.323725 GCTGGCCTCCATTTGAAGGA 60.324 55.000 3.32 0.00 30.82 3.36
40 41 1.892329 GCTGGCCTCCATTTGAAGGAA 60.892 52.381 3.32 0.00 34.08 3.36
41 42 1.821136 CTGGCCTCCATTTGAAGGAAC 59.179 52.381 3.32 0.00 34.08 3.62
42 43 0.811281 GGCCTCCATTTGAAGGAACG 59.189 55.000 0.00 0.00 34.08 3.95
43 44 0.171231 GCCTCCATTTGAAGGAACGC 59.829 55.000 0.00 0.00 34.08 4.84
44 45 1.533625 CCTCCATTTGAAGGAACGCA 58.466 50.000 0.00 0.00 34.08 5.24
45 46 1.470098 CCTCCATTTGAAGGAACGCAG 59.530 52.381 0.00 0.00 34.08 5.18
46 47 0.881118 TCCATTTGAAGGAACGCAGC 59.119 50.000 0.00 0.00 30.71 5.25
47 48 0.597568 CCATTTGAAGGAACGCAGCA 59.402 50.000 0.00 0.00 0.00 4.41
48 49 1.203052 CCATTTGAAGGAACGCAGCAT 59.797 47.619 0.00 0.00 0.00 3.79
49 50 2.256174 CATTTGAAGGAACGCAGCATG 58.744 47.619 0.00 0.00 40.87 4.06
66 67 3.711348 GCATCTGCACCTCTACGC 58.289 61.111 0.00 0.00 41.59 4.42
67 68 2.233654 GCATCTGCACCTCTACGCG 61.234 63.158 3.53 3.53 41.59 6.01
68 69 1.589993 CATCTGCACCTCTACGCGG 60.590 63.158 12.47 0.00 35.76 6.46
69 70 3.432051 ATCTGCACCTCTACGCGGC 62.432 63.158 12.47 2.03 34.38 6.53
70 71 4.435436 CTGCACCTCTACGCGGCA 62.435 66.667 12.47 7.49 0.00 5.69
71 72 3.723235 CTGCACCTCTACGCGGCAT 62.723 63.158 12.47 0.00 33.50 4.40
72 73 2.962253 GCACCTCTACGCGGCATC 60.962 66.667 12.47 0.00 0.00 3.91
73 74 2.279517 CACCTCTACGCGGCATCC 60.280 66.667 12.47 0.00 0.00 3.51
87 88 1.067213 GGCATCCGCTCTATTCCTCTC 60.067 57.143 0.00 0.00 38.60 3.20
90 91 0.556258 TCCGCTCTATTCCTCTCCCA 59.444 55.000 0.00 0.00 0.00 4.37
96 97 3.146066 CTCTATTCCTCTCCCACTCTCG 58.854 54.545 0.00 0.00 0.00 4.04
125 126 3.260884 TGTGTCTCCAAATCCAGACCTAC 59.739 47.826 0.00 0.00 38.67 3.18
126 127 2.838202 TGTCTCCAAATCCAGACCTACC 59.162 50.000 0.00 0.00 38.67 3.18
151 153 0.106708 ACACATCGTGCAGTGGTTCT 59.893 50.000 8.49 0.00 39.99 3.01
153 155 0.681733 ACATCGTGCAGTGGTTCTCT 59.318 50.000 0.00 0.00 0.00 3.10
162 164 3.134623 TGCAGTGGTTCTCTTCAGAAGAA 59.865 43.478 14.01 3.10 39.45 2.52
169 171 2.520069 TCTCTTCAGAAGAACTCGGCT 58.480 47.619 14.01 0.00 37.02 5.52
184 191 0.104304 CGGCTGGTACCTGGTATGAC 59.896 60.000 19.31 5.18 0.00 3.06
266 273 2.571653 ACTGTAGCTAGGGTGCAATTGA 59.428 45.455 10.34 0.00 34.99 2.57
268 275 3.544684 TGTAGCTAGGGTGCAATTGATG 58.455 45.455 10.34 0.00 34.99 3.07
270 277 1.035139 GCTAGGGTGCAATTGATGGG 58.965 55.000 10.34 0.00 0.00 4.00
272 279 2.422803 GCTAGGGTGCAATTGATGGGTA 60.423 50.000 10.34 0.00 0.00 3.69
273 280 2.442236 AGGGTGCAATTGATGGGTAG 57.558 50.000 10.34 0.00 0.00 3.18
274 281 1.063717 AGGGTGCAATTGATGGGTAGG 60.064 52.381 10.34 0.00 0.00 3.18
275 282 1.064017 GGGTGCAATTGATGGGTAGGA 60.064 52.381 10.34 0.00 0.00 2.94
276 283 2.622977 GGGTGCAATTGATGGGTAGGAA 60.623 50.000 10.34 0.00 0.00 3.36
277 284 2.689983 GGTGCAATTGATGGGTAGGAAG 59.310 50.000 10.34 0.00 0.00 3.46
279 286 2.310538 GCAATTGATGGGTAGGAAGGG 58.689 52.381 10.34 0.00 0.00 3.95
280 287 2.310538 CAATTGATGGGTAGGAAGGGC 58.689 52.381 0.00 0.00 0.00 5.19
281 288 1.912862 ATTGATGGGTAGGAAGGGCT 58.087 50.000 0.00 0.00 0.00 5.19
282 289 1.681229 TTGATGGGTAGGAAGGGCTT 58.319 50.000 0.00 0.00 0.00 4.35
283 290 1.681229 TGATGGGTAGGAAGGGCTTT 58.319 50.000 0.00 0.00 0.00 3.51
284 291 1.284785 TGATGGGTAGGAAGGGCTTTG 59.715 52.381 0.00 0.00 0.00 2.77
286 293 0.476808 TGGGTAGGAAGGGCTTTGGA 60.477 55.000 0.00 0.00 0.00 3.53
287 294 0.256177 GGGTAGGAAGGGCTTTGGAG 59.744 60.000 0.00 0.00 0.00 3.86
288 295 0.256177 GGTAGGAAGGGCTTTGGAGG 59.744 60.000 0.00 0.00 0.00 4.30
289 296 1.286248 GTAGGAAGGGCTTTGGAGGA 58.714 55.000 0.00 0.00 0.00 3.71
290 297 1.847088 GTAGGAAGGGCTTTGGAGGAT 59.153 52.381 0.00 0.00 0.00 3.24
291 298 0.627986 AGGAAGGGCTTTGGAGGATG 59.372 55.000 0.00 0.00 0.00 3.51
294 301 2.175715 GGAAGGGCTTTGGAGGATGTAT 59.824 50.000 0.00 0.00 0.00 2.29
296 303 3.584733 AGGGCTTTGGAGGATGTATTC 57.415 47.619 0.00 0.00 0.00 1.75
298 305 3.529319 AGGGCTTTGGAGGATGTATTCTT 59.471 43.478 0.00 0.00 0.00 2.52
303 310 5.649831 GCTTTGGAGGATGTATTCTTTGAGT 59.350 40.000 0.00 0.00 0.00 3.41
305 312 5.102953 TGGAGGATGTATTCTTTGAGTGG 57.897 43.478 0.00 0.00 0.00 4.00
306 313 4.080356 TGGAGGATGTATTCTTTGAGTGGG 60.080 45.833 0.00 0.00 0.00 4.61
307 314 4.164221 GGAGGATGTATTCTTTGAGTGGGA 59.836 45.833 0.00 0.00 0.00 4.37
308 315 5.163152 GGAGGATGTATTCTTTGAGTGGGAT 60.163 44.000 0.00 0.00 0.00 3.85
309 316 5.934781 AGGATGTATTCTTTGAGTGGGATC 58.065 41.667 0.00 0.00 0.00 3.36
310 317 5.669447 AGGATGTATTCTTTGAGTGGGATCT 59.331 40.000 0.00 0.00 0.00 2.75
311 318 5.762218 GGATGTATTCTTTGAGTGGGATCTG 59.238 44.000 0.00 0.00 0.00 2.90
312 319 5.762179 TGTATTCTTTGAGTGGGATCTGT 57.238 39.130 0.00 0.00 0.00 3.41
313 320 5.491070 TGTATTCTTTGAGTGGGATCTGTG 58.509 41.667 0.00 0.00 0.00 3.66
314 321 4.916041 ATTCTTTGAGTGGGATCTGTGA 57.084 40.909 0.00 0.00 0.00 3.58
315 322 3.969287 TCTTTGAGTGGGATCTGTGAG 57.031 47.619 0.00 0.00 0.00 3.51
316 323 2.568956 TCTTTGAGTGGGATCTGTGAGG 59.431 50.000 0.00 0.00 0.00 3.86
317 324 0.615331 TTGAGTGGGATCTGTGAGGC 59.385 55.000 0.00 0.00 0.00 4.70
318 325 1.142748 GAGTGGGATCTGTGAGGCG 59.857 63.158 0.00 0.00 0.00 5.52
319 326 1.608717 GAGTGGGATCTGTGAGGCGT 61.609 60.000 0.00 0.00 0.00 5.68
320 327 1.448540 GTGGGATCTGTGAGGCGTG 60.449 63.158 0.00 0.00 0.00 5.34
321 328 1.913262 TGGGATCTGTGAGGCGTGT 60.913 57.895 0.00 0.00 0.00 4.49
322 329 1.448540 GGGATCTGTGAGGCGTGTG 60.449 63.158 0.00 0.00 0.00 3.82
323 330 1.448540 GGATCTGTGAGGCGTGTGG 60.449 63.158 0.00 0.00 0.00 4.17
324 331 2.046892 ATCTGTGAGGCGTGTGGC 60.047 61.111 0.00 0.00 42.51 5.01
341 348 4.082523 CCGACTGGCCGTCATGGT 62.083 66.667 21.91 5.10 42.98 3.55
342 349 2.047274 CGACTGGCCGTCATGGTT 60.047 61.111 21.91 0.00 42.98 3.67
343 350 2.100631 CGACTGGCCGTCATGGTTC 61.101 63.158 21.91 0.51 42.98 3.62
344 351 1.745489 GACTGGCCGTCATGGTTCC 60.745 63.158 18.80 0.00 42.37 3.62
345 352 2.185310 GACTGGCCGTCATGGTTCCT 62.185 60.000 18.80 0.00 42.37 3.36
346 353 1.450312 CTGGCCGTCATGGTTCCTC 60.450 63.158 0.00 0.00 41.21 3.71
347 354 2.124695 GGCCGTCATGGTTCCTCC 60.125 66.667 0.00 0.00 41.21 4.30
348 355 2.124695 GCCGTCATGGTTCCTCCC 60.125 66.667 0.00 0.00 41.21 4.30
349 356 2.670148 GCCGTCATGGTTCCTCCCT 61.670 63.158 0.00 0.00 41.21 4.20
350 357 1.221840 CCGTCATGGTTCCTCCCTG 59.778 63.158 0.00 0.00 34.77 4.45
351 358 1.450312 CGTCATGGTTCCTCCCTGC 60.450 63.158 0.00 0.00 32.90 4.85
352 359 1.903877 CGTCATGGTTCCTCCCTGCT 61.904 60.000 0.00 0.00 32.90 4.24
353 360 0.329596 GTCATGGTTCCTCCCTGCTT 59.670 55.000 0.00 0.00 32.90 3.91
354 361 1.075601 TCATGGTTCCTCCCTGCTTT 58.924 50.000 0.00 0.00 32.90 3.51
355 362 1.180029 CATGGTTCCTCCCTGCTTTG 58.820 55.000 0.00 0.00 34.77 2.77
356 363 0.779997 ATGGTTCCTCCCTGCTTTGT 59.220 50.000 0.00 0.00 34.77 2.83
357 364 0.178992 TGGTTCCTCCCTGCTTTGTG 60.179 55.000 0.00 0.00 34.77 3.33
358 365 0.178990 GGTTCCTCCCTGCTTTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
359 366 1.073284 GGTTCCTCCCTGCTTTGTGTA 59.927 52.381 0.00 0.00 0.00 2.90
360 367 2.290960 GGTTCCTCCCTGCTTTGTGTAT 60.291 50.000 0.00 0.00 0.00 2.29
361 368 3.421844 GTTCCTCCCTGCTTTGTGTATT 58.578 45.455 0.00 0.00 0.00 1.89
362 369 3.806949 TCCTCCCTGCTTTGTGTATTT 57.193 42.857 0.00 0.00 0.00 1.40
363 370 4.112634 TCCTCCCTGCTTTGTGTATTTT 57.887 40.909 0.00 0.00 0.00 1.82
364 371 4.079253 TCCTCCCTGCTTTGTGTATTTTC 58.921 43.478 0.00 0.00 0.00 2.29
365 372 4.082125 CCTCCCTGCTTTGTGTATTTTCT 58.918 43.478 0.00 0.00 0.00 2.52
366 373 4.524328 CCTCCCTGCTTTGTGTATTTTCTT 59.476 41.667 0.00 0.00 0.00 2.52
367 374 5.011023 CCTCCCTGCTTTGTGTATTTTCTTT 59.989 40.000 0.00 0.00 0.00 2.52
368 375 6.462909 CCTCCCTGCTTTGTGTATTTTCTTTT 60.463 38.462 0.00 0.00 0.00 2.27
369 376 6.279882 TCCCTGCTTTGTGTATTTTCTTTTG 58.720 36.000 0.00 0.00 0.00 2.44
370 377 5.050159 CCCTGCTTTGTGTATTTTCTTTTGC 60.050 40.000 0.00 0.00 0.00 3.68
371 378 5.754890 CCTGCTTTGTGTATTTTCTTTTGCT 59.245 36.000 0.00 0.00 0.00 3.91
372 379 6.258507 CCTGCTTTGTGTATTTTCTTTTGCTT 59.741 34.615 0.00 0.00 0.00 3.91
373 380 7.232945 TGCTTTGTGTATTTTCTTTTGCTTC 57.767 32.000 0.00 0.00 0.00 3.86
374 381 6.019961 TGCTTTGTGTATTTTCTTTTGCTTCG 60.020 34.615 0.00 0.00 0.00 3.79
375 382 6.019881 GCTTTGTGTATTTTCTTTTGCTTCGT 60.020 34.615 0.00 0.00 0.00 3.85
376 383 7.464045 GCTTTGTGTATTTTCTTTTGCTTCGTT 60.464 33.333 0.00 0.00 0.00 3.85
377 384 6.804534 TGTGTATTTTCTTTTGCTTCGTTG 57.195 33.333 0.00 0.00 0.00 4.10
378 385 6.326375 TGTGTATTTTCTTTTGCTTCGTTGT 58.674 32.000 0.00 0.00 0.00 3.32
379 386 6.470877 TGTGTATTTTCTTTTGCTTCGTTGTC 59.529 34.615 0.00 0.00 0.00 3.18
380 387 5.679355 TGTATTTTCTTTTGCTTCGTTGTCG 59.321 36.000 0.00 0.00 38.55 4.35
381 388 3.750639 TTTCTTTTGCTTCGTTGTCGT 57.249 38.095 0.00 0.00 38.33 4.34
382 389 4.861389 TTTCTTTTGCTTCGTTGTCGTA 57.139 36.364 0.00 0.00 38.33 3.43
383 390 4.446857 TTCTTTTGCTTCGTTGTCGTAG 57.553 40.909 0.00 0.00 37.49 3.51
389 396 0.362512 CTTCGTTGTCGTAGCTTCGC 59.637 55.000 8.00 4.21 38.33 4.70
390 397 0.318022 TTCGTTGTCGTAGCTTCGCA 60.318 50.000 8.00 6.80 38.33 5.10
391 398 0.728129 TCGTTGTCGTAGCTTCGCAG 60.728 55.000 8.00 0.08 38.33 5.18
404 411 2.917343 GCTTCGCAGCTTTAACAATTCC 59.083 45.455 0.00 0.00 43.51 3.01
405 412 3.501950 CTTCGCAGCTTTAACAATTCCC 58.498 45.455 0.00 0.00 0.00 3.97
406 413 1.816224 TCGCAGCTTTAACAATTCCCC 59.184 47.619 0.00 0.00 0.00 4.81
407 414 1.818674 CGCAGCTTTAACAATTCCCCT 59.181 47.619 0.00 0.00 0.00 4.79
408 415 3.013921 CGCAGCTTTAACAATTCCCCTA 58.986 45.455 0.00 0.00 0.00 3.53
409 416 3.442273 CGCAGCTTTAACAATTCCCCTAA 59.558 43.478 0.00 0.00 0.00 2.69
410 417 4.097892 CGCAGCTTTAACAATTCCCCTAAT 59.902 41.667 0.00 0.00 0.00 1.73
411 418 5.351458 GCAGCTTTAACAATTCCCCTAATG 58.649 41.667 0.00 0.00 0.00 1.90
412 419 5.127031 GCAGCTTTAACAATTCCCCTAATGA 59.873 40.000 0.00 0.00 0.00 2.57
413 420 6.350949 GCAGCTTTAACAATTCCCCTAATGAA 60.351 38.462 0.00 0.00 0.00 2.57
414 421 7.260603 CAGCTTTAACAATTCCCCTAATGAAG 58.739 38.462 0.00 0.00 0.00 3.02
415 422 6.042777 GCTTTAACAATTCCCCTAATGAAGC 58.957 40.000 0.00 0.00 0.00 3.86
416 423 6.538945 TTTAACAATTCCCCTAATGAAGCC 57.461 37.500 0.00 0.00 0.00 4.35
417 424 2.654863 ACAATTCCCCTAATGAAGCCG 58.345 47.619 0.00 0.00 0.00 5.52
418 425 2.241176 ACAATTCCCCTAATGAAGCCGA 59.759 45.455 0.00 0.00 0.00 5.54
419 426 3.287222 CAATTCCCCTAATGAAGCCGAA 58.713 45.455 0.00 0.00 0.00 4.30
420 427 3.662759 ATTCCCCTAATGAAGCCGAAA 57.337 42.857 0.00 0.00 0.00 3.46
421 428 2.710096 TCCCCTAATGAAGCCGAAAG 57.290 50.000 0.00 0.00 0.00 2.62
422 429 1.913419 TCCCCTAATGAAGCCGAAAGT 59.087 47.619 0.00 0.00 0.00 2.66
423 430 2.093128 TCCCCTAATGAAGCCGAAAGTC 60.093 50.000 0.00 0.00 0.00 3.01
424 431 2.289565 CCCTAATGAAGCCGAAAGTCC 58.710 52.381 0.00 0.00 0.00 3.85
425 432 2.092914 CCCTAATGAAGCCGAAAGTCCT 60.093 50.000 0.00 0.00 0.00 3.85
426 433 3.198872 CCTAATGAAGCCGAAAGTCCTC 58.801 50.000 0.00 0.00 0.00 3.71
427 434 3.118592 CCTAATGAAGCCGAAAGTCCTCT 60.119 47.826 0.00 0.00 0.00 3.69
428 435 3.425162 AATGAAGCCGAAAGTCCTCTT 57.575 42.857 0.00 0.00 35.14 2.85
429 436 2.457366 TGAAGCCGAAAGTCCTCTTC 57.543 50.000 0.00 0.00 35.12 2.87
430 437 1.971357 TGAAGCCGAAAGTCCTCTTCT 59.029 47.619 0.00 0.00 35.46 2.85
431 438 3.162666 TGAAGCCGAAAGTCCTCTTCTA 58.837 45.455 0.00 0.00 35.46 2.10
432 439 3.576982 TGAAGCCGAAAGTCCTCTTCTAA 59.423 43.478 0.00 0.00 35.46 2.10
433 440 4.223032 TGAAGCCGAAAGTCCTCTTCTAAT 59.777 41.667 0.00 0.00 35.46 1.73
434 441 4.828072 AGCCGAAAGTCCTCTTCTAATT 57.172 40.909 0.00 0.00 32.90 1.40
435 442 4.760878 AGCCGAAAGTCCTCTTCTAATTC 58.239 43.478 0.00 0.00 32.90 2.17
436 443 3.872182 GCCGAAAGTCCTCTTCTAATTCC 59.128 47.826 0.00 0.00 32.90 3.01
437 444 4.113354 CCGAAAGTCCTCTTCTAATTCCG 58.887 47.826 0.00 0.00 32.90 4.30
438 445 4.142227 CCGAAAGTCCTCTTCTAATTCCGA 60.142 45.833 0.00 0.00 32.90 4.55
439 446 5.038033 CGAAAGTCCTCTTCTAATTCCGAG 58.962 45.833 0.00 0.00 32.90 4.63
440 447 4.394439 AAGTCCTCTTCTAATTCCGAGC 57.606 45.455 0.00 0.00 0.00 5.03
441 448 3.637769 AGTCCTCTTCTAATTCCGAGCT 58.362 45.455 0.00 0.00 0.00 4.09
442 449 3.634910 AGTCCTCTTCTAATTCCGAGCTC 59.365 47.826 2.73 2.73 0.00 4.09
443 450 3.381908 GTCCTCTTCTAATTCCGAGCTCA 59.618 47.826 15.40 0.00 0.00 4.26
444 451 4.038642 GTCCTCTTCTAATTCCGAGCTCAT 59.961 45.833 15.40 0.00 0.00 2.90
445 452 4.651503 TCCTCTTCTAATTCCGAGCTCATT 59.348 41.667 15.40 8.69 0.00 2.57
446 453 5.129485 TCCTCTTCTAATTCCGAGCTCATTT 59.871 40.000 15.40 3.76 0.00 2.32
447 454 5.236047 CCTCTTCTAATTCCGAGCTCATTTG 59.764 44.000 15.40 7.37 0.00 2.32
448 455 5.977635 TCTTCTAATTCCGAGCTCATTTGA 58.022 37.500 15.40 9.55 0.00 2.69
449 456 6.045318 TCTTCTAATTCCGAGCTCATTTGAG 58.955 40.000 15.40 3.13 44.75 3.02
461 468 3.797039 CTCATTTGAGCTCGGGATAACA 58.203 45.455 9.64 0.00 35.13 2.41
462 469 3.797039 TCATTTGAGCTCGGGATAACAG 58.203 45.455 9.64 0.00 0.00 3.16
463 470 3.197766 TCATTTGAGCTCGGGATAACAGT 59.802 43.478 9.64 0.00 0.00 3.55
464 471 2.961526 TTGAGCTCGGGATAACAGTC 57.038 50.000 9.64 0.00 0.00 3.51
465 472 1.847328 TGAGCTCGGGATAACAGTCA 58.153 50.000 9.64 0.00 0.00 3.41
466 473 2.176045 TGAGCTCGGGATAACAGTCAA 58.824 47.619 9.64 0.00 0.00 3.18
467 474 2.565391 TGAGCTCGGGATAACAGTCAAA 59.435 45.455 9.64 0.00 0.00 2.69
468 475 3.197766 TGAGCTCGGGATAACAGTCAAAT 59.802 43.478 9.64 0.00 0.00 2.32
469 476 4.192317 GAGCTCGGGATAACAGTCAAATT 58.808 43.478 0.00 0.00 0.00 1.82
470 477 3.941483 AGCTCGGGATAACAGTCAAATTG 59.059 43.478 0.00 0.00 0.00 2.32
471 478 3.938963 GCTCGGGATAACAGTCAAATTGA 59.061 43.478 0.00 0.00 0.00 2.57
472 479 4.394920 GCTCGGGATAACAGTCAAATTGAA 59.605 41.667 0.00 0.00 0.00 2.69
473 480 5.106317 GCTCGGGATAACAGTCAAATTGAAA 60.106 40.000 0.00 0.00 0.00 2.69
474 481 6.569610 GCTCGGGATAACAGTCAAATTGAAAA 60.570 38.462 0.00 0.00 0.00 2.29
475 482 7.278461 TCGGGATAACAGTCAAATTGAAAAA 57.722 32.000 0.00 0.00 0.00 1.94
502 509 9.777575 AAAATGCAAAAAGAATCAGAAAAACTG 57.222 25.926 0.00 0.00 46.97 3.16
540 547 8.560576 ACTAACTTTGACAAATGTTTTCATCG 57.439 30.769 15.92 0.02 39.94 3.84
541 548 6.826893 AACTTTGACAAATGTTTTCATCGG 57.173 33.333 0.05 0.00 39.94 4.18
542 549 5.288804 ACTTTGACAAATGTTTTCATCGGG 58.711 37.500 0.05 0.00 39.94 5.14
543 550 5.068460 ACTTTGACAAATGTTTTCATCGGGA 59.932 36.000 0.05 0.00 39.94 5.14
544 551 5.521906 TTGACAAATGTTTTCATCGGGAA 57.478 34.783 0.00 0.00 39.94 3.97
545 552 5.119931 TGACAAATGTTTTCATCGGGAAG 57.880 39.130 0.00 0.00 39.94 3.46
546 553 3.913089 ACAAATGTTTTCATCGGGAAGC 58.087 40.909 0.00 0.00 39.94 3.86
547 554 3.320541 ACAAATGTTTTCATCGGGAAGCA 59.679 39.130 0.00 0.00 39.94 3.91
548 555 4.021192 ACAAATGTTTTCATCGGGAAGCAT 60.021 37.500 0.00 0.00 39.94 3.79
549 556 4.806640 AATGTTTTCATCGGGAAGCATT 57.193 36.364 12.20 12.20 39.94 3.56
550 557 4.806640 ATGTTTTCATCGGGAAGCATTT 57.193 36.364 0.00 0.00 35.32 2.32
551 558 3.911868 TGTTTTCATCGGGAAGCATTTG 58.088 40.909 0.00 0.00 36.72 2.32
552 559 3.571828 TGTTTTCATCGGGAAGCATTTGA 59.428 39.130 0.00 0.00 36.72 2.69
553 560 4.168760 GTTTTCATCGGGAAGCATTTGAG 58.831 43.478 0.00 0.00 36.72 3.02
554 561 1.382522 TCATCGGGAAGCATTTGAGC 58.617 50.000 0.00 0.00 0.00 4.26
556 563 1.332997 CATCGGGAAGCATTTGAGCTC 59.667 52.381 6.82 6.82 45.89 4.09
557 564 0.740868 TCGGGAAGCATTTGAGCTCG 60.741 55.000 9.64 0.00 45.89 5.03
558 565 1.709147 CGGGAAGCATTTGAGCTCGG 61.709 60.000 9.64 0.00 45.89 4.63
559 566 1.379642 GGGAAGCATTTGAGCTCGGG 61.380 60.000 9.64 0.00 45.89 5.14
560 567 0.678048 GGAAGCATTTGAGCTCGGGT 60.678 55.000 9.64 1.27 45.89 5.28
561 568 0.729690 GAAGCATTTGAGCTCGGGTC 59.270 55.000 9.64 0.00 45.89 4.46
562 569 0.678048 AAGCATTTGAGCTCGGGTCC 60.678 55.000 9.64 0.00 45.89 4.46
563 570 1.377202 GCATTTGAGCTCGGGTCCA 60.377 57.895 9.64 0.00 0.00 4.02
564 571 1.372087 GCATTTGAGCTCGGGTCCAG 61.372 60.000 9.64 0.00 0.00 3.86
565 572 0.250234 CATTTGAGCTCGGGTCCAGA 59.750 55.000 9.64 0.00 0.00 3.86
566 573 1.134280 CATTTGAGCTCGGGTCCAGAT 60.134 52.381 9.64 0.00 0.00 2.90
567 574 1.860641 TTTGAGCTCGGGTCCAGATA 58.139 50.000 9.64 0.00 0.00 1.98
568 575 1.112113 TTGAGCTCGGGTCCAGATAC 58.888 55.000 9.64 0.00 0.00 2.24
569 576 0.259065 TGAGCTCGGGTCCAGATACT 59.741 55.000 9.64 0.00 0.00 2.12
570 577 0.955905 GAGCTCGGGTCCAGATACTC 59.044 60.000 0.00 6.49 0.00 2.59
571 578 0.468400 AGCTCGGGTCCAGATACTCC 60.468 60.000 0.00 0.00 0.00 3.85
572 579 0.755698 GCTCGGGTCCAGATACTCCA 60.756 60.000 0.00 0.00 0.00 3.86
573 580 1.033574 CTCGGGTCCAGATACTCCAC 58.966 60.000 0.00 0.00 0.00 4.02
574 581 0.629596 TCGGGTCCAGATACTCCACT 59.370 55.000 0.00 0.00 0.00 4.00
575 582 1.006758 TCGGGTCCAGATACTCCACTT 59.993 52.381 0.00 0.00 0.00 3.16
576 583 1.409427 CGGGTCCAGATACTCCACTTC 59.591 57.143 0.00 0.00 0.00 3.01
577 584 1.763545 GGGTCCAGATACTCCACTTCC 59.236 57.143 0.00 0.00 0.00 3.46
578 585 2.467880 GGTCCAGATACTCCACTTCCA 58.532 52.381 0.00 0.00 0.00 3.53
579 586 2.838202 GGTCCAGATACTCCACTTCCAA 59.162 50.000 0.00 0.00 0.00 3.53
580 587 3.263425 GGTCCAGATACTCCACTTCCAAA 59.737 47.826 0.00 0.00 0.00 3.28
581 588 4.080299 GGTCCAGATACTCCACTTCCAAAT 60.080 45.833 0.00 0.00 0.00 2.32
582 589 4.878397 GTCCAGATACTCCACTTCCAAATG 59.122 45.833 0.00 0.00 0.00 2.32
583 590 4.080356 TCCAGATACTCCACTTCCAAATGG 60.080 45.833 0.00 0.00 37.32 3.16
584 591 4.080356 CCAGATACTCCACTTCCAAATGGA 60.080 45.833 0.00 0.00 42.88 3.41
602 609 4.987408 TGGAAGTCCATATTTGCACATG 57.013 40.909 0.00 0.00 42.01 3.21
603 610 4.343231 TGGAAGTCCATATTTGCACATGT 58.657 39.130 0.00 0.00 42.01 3.21
604 611 4.158209 TGGAAGTCCATATTTGCACATGTG 59.842 41.667 21.83 21.83 42.01 3.21
605 612 4.158394 GGAAGTCCATATTTGCACATGTGT 59.842 41.667 26.01 9.67 35.64 3.72
628 635 2.042686 TGTGGTTCTCTATGCATGGC 57.957 50.000 10.16 0.00 0.00 4.40
638 645 7.065563 GGTTCTCTATGCATGGCTATTGATTAG 59.934 40.741 10.16 0.00 0.00 1.73
639 646 7.486407 TCTCTATGCATGGCTATTGATTAGA 57.514 36.000 10.16 0.00 0.00 2.10
640 647 8.087303 TCTCTATGCATGGCTATTGATTAGAT 57.913 34.615 10.16 0.00 0.00 1.98
641 648 9.205513 TCTCTATGCATGGCTATTGATTAGATA 57.794 33.333 10.16 0.00 0.00 1.98
961 974 5.363939 CGGCTCATCTTTCTAATCTTTCCT 58.636 41.667 0.00 0.00 0.00 3.36
1057 1073 0.944386 CTCCAAACACCTTGACGTGG 59.056 55.000 0.00 0.00 37.17 4.94
1120 1136 3.365820 GCACTCAATTGTTGCTATGTTGC 59.634 43.478 20.65 10.18 0.00 4.17
1191 5291 0.742990 TTGCCTTCTTCGCATACCCG 60.743 55.000 0.00 0.00 35.83 5.28
1203 5303 2.016604 GCATACCCGTCCAAATCTGCA 61.017 52.381 0.00 0.00 0.00 4.41
1255 5367 2.161410 CGACAAAATCTCGGCATCCAAA 59.839 45.455 0.00 0.00 0.00 3.28
1262 5374 2.398588 TCTCGGCATCCAAACTCCTAT 58.601 47.619 0.00 0.00 0.00 2.57
1265 5380 2.103094 TCGGCATCCAAACTCCTATCAG 59.897 50.000 0.00 0.00 0.00 2.90
1328 5443 2.226330 CAACCCAAAGATCAACCGTCA 58.774 47.619 0.00 0.00 0.00 4.35
1329 5444 2.819608 CAACCCAAAGATCAACCGTCAT 59.180 45.455 0.00 0.00 0.00 3.06
1334 5449 1.086696 AAGATCAACCGTCATTGCCG 58.913 50.000 0.00 0.00 0.00 5.69
1443 5561 0.515127 TTGATGCGTTTAGTGGTGCG 59.485 50.000 0.00 0.00 0.00 5.34
1505 5635 4.727507 ACTATTGTAGCACTCTGACTGG 57.272 45.455 0.00 0.00 0.00 4.00
1554 5696 5.659079 CCTCCTTGTTAGTACTGAATCCTCT 59.341 44.000 5.39 0.00 0.00 3.69
1568 5710 6.126536 ACTGAATCCTCTCTATTTGATTGGCT 60.127 38.462 0.00 0.00 0.00 4.75
1613 5756 7.595130 GTCTGAACTCAAATTTTCCAATGTACC 59.405 37.037 0.00 0.00 0.00 3.34
1719 5862 1.888436 TTGTCCTGCAGGAGCTACCG 61.888 60.000 35.92 5.79 46.49 4.02
1853 5996 0.977395 GCCTTCTGTACACTCCACCT 59.023 55.000 0.00 0.00 0.00 4.00
1935 6495 0.179086 TCTTCGTTGCTGCTGACACA 60.179 50.000 0.00 0.00 0.00 3.72
1941 6501 2.149578 GTTGCTGCTGACACAAGAGAT 58.850 47.619 0.00 0.00 0.00 2.75
1947 6507 1.677217 GCTGACACAAGAGATCCACCC 60.677 57.143 0.00 0.00 0.00 4.61
2038 6598 1.985460 TTGGGGTGTACGCTGGTTGT 61.985 55.000 6.35 0.00 0.00 3.32
2166 6729 6.126796 TGTTCTATTCTAATGGCCAGTGATCA 60.127 38.462 17.71 5.82 0.00 2.92
2173 6736 1.026182 TGGCCAGTGATCATTGACGC 61.026 55.000 18.99 13.95 0.00 5.19
2174 6737 1.026182 GGCCAGTGATCATTGACGCA 61.026 55.000 18.99 0.00 0.00 5.24
2512 7076 6.367422 ACTTTCTGCAGTAATTCTCTTCTTCG 59.633 38.462 14.67 0.00 0.00 3.79
2554 7118 4.338118 ACAAATATTTGGCGGTATGAGTGG 59.662 41.667 27.43 2.64 42.34 4.00
2640 7204 2.989840 CTGGAAGCTTACGACTGACAAG 59.010 50.000 3.73 0.00 0.00 3.16
2737 7301 0.323633 CATTGGACCATCAGGCACCA 60.324 55.000 0.00 0.00 41.02 4.17
2829 7394 3.153919 GCAATGTTTTGTACTCCCTCCA 58.846 45.455 0.00 0.00 35.17 3.86
2836 7401 1.806496 TGTACTCCCTCCATCCCATG 58.194 55.000 0.00 0.00 0.00 3.66
2848 7413 4.096681 TCCATCCCATGATATAAGAGCGT 58.903 43.478 0.00 0.00 0.00 5.07
2850 7415 5.013079 TCCATCCCATGATATAAGAGCGTTT 59.987 40.000 0.00 0.00 0.00 3.60
2978 7543 8.946085 GTAACATGACCATTCTAAATGTTCAGA 58.054 33.333 0.00 0.00 40.77 3.27
3068 7633 3.674997 TGCTGCTAAGGGTAACAAAGAG 58.325 45.455 0.00 0.00 39.74 2.85
3081 7646 3.655276 ACAAAGAGAAGGCATTTGCTG 57.345 42.857 2.12 0.00 41.70 4.41
3082 7647 3.225104 ACAAAGAGAAGGCATTTGCTGA 58.775 40.909 2.12 0.00 41.70 4.26
3083 7648 3.638160 ACAAAGAGAAGGCATTTGCTGAA 59.362 39.130 2.12 0.00 41.70 3.02
3084 7649 4.099881 ACAAAGAGAAGGCATTTGCTGAAA 59.900 37.500 2.12 0.00 41.70 2.69
3085 7650 5.221581 ACAAAGAGAAGGCATTTGCTGAAAT 60.222 36.000 2.12 0.00 41.70 2.17
3086 7651 5.479124 AAGAGAAGGCATTTGCTGAAATT 57.521 34.783 2.12 0.00 41.70 1.82
3087 7652 4.817517 AGAGAAGGCATTTGCTGAAATTG 58.182 39.130 2.12 0.00 41.70 2.32
3153 7718 7.910162 GCGCTTTACAAAGATCAAAATAGATGA 59.090 33.333 0.00 0.00 38.28 2.92
3322 7891 2.158928 GCTCAATTTATGCATTGGCCCA 60.159 45.455 3.54 0.00 40.13 5.36
3354 7923 7.701924 CACAAATAGTCAAAAACTCTTCAGCAA 59.298 33.333 0.00 0.00 39.55 3.91
3480 8049 3.444818 TTGCCCGCCATAATCCCCC 62.445 63.158 0.00 0.00 0.00 5.40
3487 8056 0.555769 GCCATAATCCCCCTGGACAA 59.444 55.000 0.00 0.00 45.58 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.809496 AATGGAGGCCAGCTGCGG 62.809 66.667 8.66 0.00 42.61 5.69
16 17 2.753043 AAATGGAGGCCAGCTGCG 60.753 61.111 8.66 2.70 42.61 5.18
17 18 1.252904 TTCAAATGGAGGCCAGCTGC 61.253 55.000 8.66 3.68 36.75 5.25
18 19 0.815734 CTTCAAATGGAGGCCAGCTG 59.184 55.000 6.78 6.78 36.75 4.24
19 20 0.324091 CCTTCAAATGGAGGCCAGCT 60.324 55.000 5.01 0.00 36.75 4.24
20 21 0.323725 TCCTTCAAATGGAGGCCAGC 60.324 55.000 5.01 0.00 36.75 4.85
21 22 1.821136 GTTCCTTCAAATGGAGGCCAG 59.179 52.381 5.01 0.00 36.75 4.85
22 23 1.886222 CGTTCCTTCAAATGGAGGCCA 60.886 52.381 5.01 0.00 38.19 5.36
23 24 0.811281 CGTTCCTTCAAATGGAGGCC 59.189 55.000 2.58 0.00 34.76 5.19
24 25 0.171231 GCGTTCCTTCAAATGGAGGC 59.829 55.000 2.58 0.00 34.76 4.70
25 26 1.470098 CTGCGTTCCTTCAAATGGAGG 59.530 52.381 0.87 0.87 34.76 4.30
26 27 1.135575 GCTGCGTTCCTTCAAATGGAG 60.136 52.381 0.00 0.00 36.86 3.86
27 28 0.881118 GCTGCGTTCCTTCAAATGGA 59.119 50.000 0.00 0.00 0.00 3.41
28 29 0.597568 TGCTGCGTTCCTTCAAATGG 59.402 50.000 0.00 0.00 0.00 3.16
29 30 2.256174 CATGCTGCGTTCCTTCAAATG 58.744 47.619 0.00 0.00 0.00 2.32
30 31 1.403249 GCATGCTGCGTTCCTTCAAAT 60.403 47.619 11.37 0.00 31.71 2.32
31 32 0.039256 GCATGCTGCGTTCCTTCAAA 60.039 50.000 11.37 0.00 31.71 2.69
32 33 1.580942 GCATGCTGCGTTCCTTCAA 59.419 52.632 11.37 0.00 31.71 2.69
33 34 3.266964 GCATGCTGCGTTCCTTCA 58.733 55.556 11.37 0.00 31.71 3.02
49 50 2.233654 CGCGTAGAGGTGCAGATGC 61.234 63.158 0.00 0.00 42.50 3.91
50 51 1.589993 CCGCGTAGAGGTGCAGATG 60.590 63.158 4.92 0.00 44.52 2.90
51 52 2.808315 CCGCGTAGAGGTGCAGAT 59.192 61.111 4.92 0.00 44.52 2.90
67 68 0.972883 AGAGGAATAGAGCGGATGCC 59.027 55.000 0.00 0.00 44.31 4.40
68 69 1.067213 GGAGAGGAATAGAGCGGATGC 60.067 57.143 0.00 0.00 43.24 3.91
69 70 1.548269 GGGAGAGGAATAGAGCGGATG 59.452 57.143 0.00 0.00 0.00 3.51
70 71 1.148027 TGGGAGAGGAATAGAGCGGAT 59.852 52.381 0.00 0.00 0.00 4.18
71 72 0.556258 TGGGAGAGGAATAGAGCGGA 59.444 55.000 0.00 0.00 0.00 5.54
72 73 0.676736 GTGGGAGAGGAATAGAGCGG 59.323 60.000 0.00 0.00 0.00 5.52
73 74 1.611491 GAGTGGGAGAGGAATAGAGCG 59.389 57.143 0.00 0.00 0.00 5.03
74 75 2.890945 GAGAGTGGGAGAGGAATAGAGC 59.109 54.545 0.00 0.00 0.00 4.09
75 76 3.146066 CGAGAGTGGGAGAGGAATAGAG 58.854 54.545 0.00 0.00 0.00 2.43
76 77 2.510382 ACGAGAGTGGGAGAGGAATAGA 59.490 50.000 0.00 0.00 46.97 1.98
77 78 2.938838 ACGAGAGTGGGAGAGGAATAG 58.061 52.381 0.00 0.00 46.97 1.73
90 91 4.060139 TGGAGACACATACACACGAGAGT 61.060 47.826 0.00 0.00 40.34 3.24
96 97 4.323417 TGGATTTGGAGACACATACACAC 58.677 43.478 0.00 0.00 36.43 3.82
125 126 0.738762 CTGCACGATGTGTCTCCTGG 60.739 60.000 0.00 0.00 35.75 4.45
126 127 0.037882 ACTGCACGATGTGTCTCCTG 60.038 55.000 0.00 0.00 35.75 3.86
151 153 1.273606 CCAGCCGAGTTCTTCTGAAGA 59.726 52.381 15.82 15.82 35.26 2.87
153 155 1.048601 ACCAGCCGAGTTCTTCTGAA 58.951 50.000 0.00 0.00 0.00 3.02
162 164 0.032416 ATACCAGGTACCAGCCGAGT 60.032 55.000 15.94 1.87 0.00 4.18
169 171 5.145564 GGAATCTAGTCATACCAGGTACCA 58.854 45.833 15.94 0.00 0.00 3.25
184 191 3.000727 ACCAAAAACGAGCGGAATCTAG 58.999 45.455 0.00 0.00 0.00 2.43
221 228 4.927267 TCAATCCTTGGTTGGAGTATGT 57.073 40.909 0.00 0.00 39.78 2.29
234 241 5.014228 ACCCTAGCTACAGTTTTCAATCCTT 59.986 40.000 0.00 0.00 0.00 3.36
236 243 4.636206 CACCCTAGCTACAGTTTTCAATCC 59.364 45.833 0.00 0.00 0.00 3.01
247 254 3.544684 CATCAATTGCACCCTAGCTACA 58.455 45.455 0.00 0.00 34.99 2.74
248 255 2.880890 CCATCAATTGCACCCTAGCTAC 59.119 50.000 0.00 0.00 34.99 3.58
249 256 2.158623 CCCATCAATTGCACCCTAGCTA 60.159 50.000 0.00 0.00 34.99 3.32
254 261 1.063717 CCTACCCATCAATTGCACCCT 60.064 52.381 0.00 0.00 0.00 4.34
266 273 0.631212 CCAAAGCCCTTCCTACCCAT 59.369 55.000 0.00 0.00 0.00 4.00
268 275 0.256177 CTCCAAAGCCCTTCCTACCC 59.744 60.000 0.00 0.00 0.00 3.69
270 277 1.286248 TCCTCCAAAGCCCTTCCTAC 58.714 55.000 0.00 0.00 0.00 3.18
272 279 0.627986 CATCCTCCAAAGCCCTTCCT 59.372 55.000 0.00 0.00 0.00 3.36
273 280 0.332972 ACATCCTCCAAAGCCCTTCC 59.667 55.000 0.00 0.00 0.00 3.46
274 281 3.584733 ATACATCCTCCAAAGCCCTTC 57.415 47.619 0.00 0.00 0.00 3.46
275 282 3.529319 AGAATACATCCTCCAAAGCCCTT 59.471 43.478 0.00 0.00 0.00 3.95
276 283 3.126453 AGAATACATCCTCCAAAGCCCT 58.874 45.455 0.00 0.00 0.00 5.19
277 284 3.584733 AGAATACATCCTCCAAAGCCC 57.415 47.619 0.00 0.00 0.00 5.19
279 286 5.649831 ACTCAAAGAATACATCCTCCAAAGC 59.350 40.000 0.00 0.00 0.00 3.51
280 287 6.094603 CCACTCAAAGAATACATCCTCCAAAG 59.905 42.308 0.00 0.00 0.00 2.77
281 288 5.945784 CCACTCAAAGAATACATCCTCCAAA 59.054 40.000 0.00 0.00 0.00 3.28
282 289 5.500234 CCACTCAAAGAATACATCCTCCAA 58.500 41.667 0.00 0.00 0.00 3.53
283 290 4.080356 CCCACTCAAAGAATACATCCTCCA 60.080 45.833 0.00 0.00 0.00 3.86
284 291 4.164221 TCCCACTCAAAGAATACATCCTCC 59.836 45.833 0.00 0.00 0.00 4.30
286 293 5.669447 AGATCCCACTCAAAGAATACATCCT 59.331 40.000 0.00 0.00 0.00 3.24
287 294 5.762218 CAGATCCCACTCAAAGAATACATCC 59.238 44.000 0.00 0.00 0.00 3.51
288 295 6.259608 CACAGATCCCACTCAAAGAATACATC 59.740 42.308 0.00 0.00 0.00 3.06
289 296 6.070021 TCACAGATCCCACTCAAAGAATACAT 60.070 38.462 0.00 0.00 0.00 2.29
290 297 5.248248 TCACAGATCCCACTCAAAGAATACA 59.752 40.000 0.00 0.00 0.00 2.29
291 298 5.734720 TCACAGATCCCACTCAAAGAATAC 58.265 41.667 0.00 0.00 0.00 1.89
294 301 3.008375 CCTCACAGATCCCACTCAAAGAA 59.992 47.826 0.00 0.00 0.00 2.52
296 303 2.938756 GCCTCACAGATCCCACTCAAAG 60.939 54.545 0.00 0.00 0.00 2.77
298 305 0.615331 GCCTCACAGATCCCACTCAA 59.385 55.000 0.00 0.00 0.00 3.02
303 310 1.913262 ACACGCCTCACAGATCCCA 60.913 57.895 0.00 0.00 0.00 4.37
305 312 1.448540 CCACACGCCTCACAGATCC 60.449 63.158 0.00 0.00 0.00 3.36
306 313 2.103042 GCCACACGCCTCACAGATC 61.103 63.158 0.00 0.00 0.00 2.75
307 314 2.046892 GCCACACGCCTCACAGAT 60.047 61.111 0.00 0.00 0.00 2.90
327 334 2.185310 GAGGAACCATGACGGCCAGT 62.185 60.000 2.24 0.72 39.03 4.00
328 335 1.450312 GAGGAACCATGACGGCCAG 60.450 63.158 2.24 0.00 39.03 4.85
329 336 2.668632 GAGGAACCATGACGGCCA 59.331 61.111 2.24 0.00 39.03 5.36
330 337 2.124695 GGAGGAACCATGACGGCC 60.125 66.667 0.00 0.00 39.03 6.13
331 338 2.124695 GGGAGGAACCATGACGGC 60.125 66.667 0.00 0.00 41.20 5.68
332 339 3.727387 AGGGAGGAACCATGACGG 58.273 61.111 0.00 0.00 41.20 4.79
337 344 0.779997 ACAAAGCAGGGAGGAACCAT 59.220 50.000 0.00 0.00 41.20 3.55
338 345 0.178992 CACAAAGCAGGGAGGAACCA 60.179 55.000 0.00 0.00 41.20 3.67
339 346 0.178990 ACACAAAGCAGGGAGGAACC 60.179 55.000 0.00 0.00 38.08 3.62
340 347 2.561478 TACACAAAGCAGGGAGGAAC 57.439 50.000 0.00 0.00 0.00 3.62
341 348 3.806949 AATACACAAAGCAGGGAGGAA 57.193 42.857 0.00 0.00 0.00 3.36
342 349 3.806949 AAATACACAAAGCAGGGAGGA 57.193 42.857 0.00 0.00 0.00 3.71
343 350 4.082125 AGAAAATACACAAAGCAGGGAGG 58.918 43.478 0.00 0.00 0.00 4.30
344 351 5.712152 AAGAAAATACACAAAGCAGGGAG 57.288 39.130 0.00 0.00 0.00 4.30
345 352 6.279882 CAAAAGAAAATACACAAAGCAGGGA 58.720 36.000 0.00 0.00 0.00 4.20
346 353 5.050159 GCAAAAGAAAATACACAAAGCAGGG 60.050 40.000 0.00 0.00 0.00 4.45
347 354 5.754890 AGCAAAAGAAAATACACAAAGCAGG 59.245 36.000 0.00 0.00 0.00 4.85
348 355 6.833342 AGCAAAAGAAAATACACAAAGCAG 57.167 33.333 0.00 0.00 0.00 4.24
349 356 6.019961 CGAAGCAAAAGAAAATACACAAAGCA 60.020 34.615 0.00 0.00 0.00 3.91
350 357 6.019881 ACGAAGCAAAAGAAAATACACAAAGC 60.020 34.615 0.00 0.00 0.00 3.51
351 358 7.449934 ACGAAGCAAAAGAAAATACACAAAG 57.550 32.000 0.00 0.00 0.00 2.77
352 359 7.329717 ACAACGAAGCAAAAGAAAATACACAAA 59.670 29.630 0.00 0.00 0.00 2.83
353 360 6.809196 ACAACGAAGCAAAAGAAAATACACAA 59.191 30.769 0.00 0.00 0.00 3.33
354 361 6.326375 ACAACGAAGCAAAAGAAAATACACA 58.674 32.000 0.00 0.00 0.00 3.72
355 362 6.343924 CGACAACGAAGCAAAAGAAAATACAC 60.344 38.462 0.00 0.00 42.66 2.90
356 363 5.679355 CGACAACGAAGCAAAAGAAAATACA 59.321 36.000 0.00 0.00 42.66 2.29
357 364 5.679792 ACGACAACGAAGCAAAAGAAAATAC 59.320 36.000 0.00 0.00 42.66 1.89
358 365 5.812652 ACGACAACGAAGCAAAAGAAAATA 58.187 33.333 0.00 0.00 42.66 1.40
359 366 4.668289 ACGACAACGAAGCAAAAGAAAAT 58.332 34.783 0.00 0.00 42.66 1.82
360 367 4.086199 ACGACAACGAAGCAAAAGAAAA 57.914 36.364 0.00 0.00 42.66 2.29
361 368 3.750639 ACGACAACGAAGCAAAAGAAA 57.249 38.095 0.00 0.00 42.66 2.52
362 369 3.302870 GCTACGACAACGAAGCAAAAGAA 60.303 43.478 0.00 0.00 42.66 2.52
363 370 2.220133 GCTACGACAACGAAGCAAAAGA 59.780 45.455 0.00 0.00 42.66 2.52
364 371 2.221055 AGCTACGACAACGAAGCAAAAG 59.779 45.455 0.00 0.00 42.66 2.27
365 372 2.206750 AGCTACGACAACGAAGCAAAA 58.793 42.857 0.00 0.00 42.66 2.44
366 373 1.860676 AGCTACGACAACGAAGCAAA 58.139 45.000 0.00 0.00 42.66 3.68
367 374 1.790623 GAAGCTACGACAACGAAGCAA 59.209 47.619 0.00 0.00 42.66 3.91
368 375 1.415374 GAAGCTACGACAACGAAGCA 58.585 50.000 0.00 0.00 42.66 3.91
369 376 0.362512 CGAAGCTACGACAACGAAGC 59.637 55.000 0.00 0.00 42.66 3.86
384 391 3.501950 GGGAATTGTTAAAGCTGCGAAG 58.498 45.455 0.00 0.00 0.00 3.79
385 392 2.230266 GGGGAATTGTTAAAGCTGCGAA 59.770 45.455 0.00 0.00 0.00 4.70
386 393 1.816224 GGGGAATTGTTAAAGCTGCGA 59.184 47.619 0.00 0.00 0.00 5.10
387 394 1.818674 AGGGGAATTGTTAAAGCTGCG 59.181 47.619 0.00 0.00 0.00 5.18
388 395 5.127031 TCATTAGGGGAATTGTTAAAGCTGC 59.873 40.000 0.00 0.00 0.00 5.25
389 396 6.773976 TCATTAGGGGAATTGTTAAAGCTG 57.226 37.500 0.00 0.00 0.00 4.24
390 397 6.127338 GCTTCATTAGGGGAATTGTTAAAGCT 60.127 38.462 0.00 0.00 33.34 3.74
391 398 6.042777 GCTTCATTAGGGGAATTGTTAAAGC 58.957 40.000 0.00 0.00 0.00 3.51
392 399 6.573434 GGCTTCATTAGGGGAATTGTTAAAG 58.427 40.000 0.00 0.00 0.00 1.85
393 400 5.126384 CGGCTTCATTAGGGGAATTGTTAAA 59.874 40.000 0.00 0.00 0.00 1.52
394 401 4.642885 CGGCTTCATTAGGGGAATTGTTAA 59.357 41.667 0.00 0.00 0.00 2.01
395 402 4.080243 TCGGCTTCATTAGGGGAATTGTTA 60.080 41.667 0.00 0.00 0.00 2.41
396 403 3.023832 CGGCTTCATTAGGGGAATTGTT 58.976 45.455 0.00 0.00 0.00 2.83
397 404 2.241176 TCGGCTTCATTAGGGGAATTGT 59.759 45.455 0.00 0.00 0.00 2.71
398 405 2.930950 TCGGCTTCATTAGGGGAATTG 58.069 47.619 0.00 0.00 0.00 2.32
399 406 3.662759 TTCGGCTTCATTAGGGGAATT 57.337 42.857 0.00 0.00 0.00 2.17
400 407 3.053619 ACTTTCGGCTTCATTAGGGGAAT 60.054 43.478 0.00 0.00 0.00 3.01
401 408 2.307686 ACTTTCGGCTTCATTAGGGGAA 59.692 45.455 0.00 0.00 0.00 3.97
402 409 1.913419 ACTTTCGGCTTCATTAGGGGA 59.087 47.619 0.00 0.00 0.00 4.81
403 410 2.289565 GACTTTCGGCTTCATTAGGGG 58.710 52.381 0.00 0.00 0.00 4.79
404 411 2.092914 AGGACTTTCGGCTTCATTAGGG 60.093 50.000 0.00 0.00 0.00 3.53
405 412 3.118592 AGAGGACTTTCGGCTTCATTAGG 60.119 47.826 0.00 0.00 0.00 2.69
406 413 4.130286 AGAGGACTTTCGGCTTCATTAG 57.870 45.455 0.00 0.00 0.00 1.73
407 414 4.223032 AGAAGAGGACTTTCGGCTTCATTA 59.777 41.667 0.00 0.00 37.89 1.90
408 415 3.008485 AGAAGAGGACTTTCGGCTTCATT 59.992 43.478 0.00 0.00 37.89 2.57
409 416 2.569404 AGAAGAGGACTTTCGGCTTCAT 59.431 45.455 0.00 0.00 37.89 2.57
410 417 1.971357 AGAAGAGGACTTTCGGCTTCA 59.029 47.619 0.00 0.00 37.89 3.02
411 418 2.753055 AGAAGAGGACTTTCGGCTTC 57.247 50.000 0.00 0.00 36.39 3.86
412 419 4.828072 ATTAGAAGAGGACTTTCGGCTT 57.172 40.909 0.00 0.00 36.39 4.35
413 420 4.383226 GGAATTAGAAGAGGACTTTCGGCT 60.383 45.833 0.00 0.00 36.39 5.52
414 421 3.872182 GGAATTAGAAGAGGACTTTCGGC 59.128 47.826 0.00 0.00 36.39 5.54
415 422 4.113354 CGGAATTAGAAGAGGACTTTCGG 58.887 47.826 0.00 0.00 36.39 4.30
416 423 4.995124 TCGGAATTAGAAGAGGACTTTCG 58.005 43.478 0.00 0.00 36.39 3.46
417 424 4.806775 GCTCGGAATTAGAAGAGGACTTTC 59.193 45.833 0.00 0.00 36.39 2.62
418 425 4.468153 AGCTCGGAATTAGAAGAGGACTTT 59.532 41.667 0.00 0.00 36.39 2.66
419 426 4.027437 AGCTCGGAATTAGAAGAGGACTT 58.973 43.478 0.00 0.00 39.24 3.01
420 427 3.634910 GAGCTCGGAATTAGAAGAGGACT 59.365 47.826 0.00 0.00 0.00 3.85
421 428 3.381908 TGAGCTCGGAATTAGAAGAGGAC 59.618 47.826 9.64 0.00 0.00 3.85
422 429 3.632333 TGAGCTCGGAATTAGAAGAGGA 58.368 45.455 9.64 0.00 0.00 3.71
423 430 4.599047 ATGAGCTCGGAATTAGAAGAGG 57.401 45.455 9.64 0.00 0.00 3.69
424 431 6.045318 TCAAATGAGCTCGGAATTAGAAGAG 58.955 40.000 9.64 0.00 0.00 2.85
425 432 5.977635 TCAAATGAGCTCGGAATTAGAAGA 58.022 37.500 9.64 0.00 0.00 2.87
426 433 6.284475 CTCAAATGAGCTCGGAATTAGAAG 57.716 41.667 9.64 0.00 35.13 2.85
440 447 3.797039 TGTTATCCCGAGCTCAAATGAG 58.203 45.455 15.40 6.05 44.75 2.90
441 448 3.197766 ACTGTTATCCCGAGCTCAAATGA 59.802 43.478 15.40 4.26 0.00 2.57
442 449 3.535561 ACTGTTATCCCGAGCTCAAATG 58.464 45.455 15.40 0.00 0.00 2.32
443 450 3.197766 TGACTGTTATCCCGAGCTCAAAT 59.802 43.478 15.40 6.14 0.00 2.32
444 451 2.565391 TGACTGTTATCCCGAGCTCAAA 59.435 45.455 15.40 0.00 0.00 2.69
445 452 2.176045 TGACTGTTATCCCGAGCTCAA 58.824 47.619 15.40 0.00 0.00 3.02
446 453 1.847328 TGACTGTTATCCCGAGCTCA 58.153 50.000 15.40 0.00 0.00 4.26
447 454 2.961526 TTGACTGTTATCCCGAGCTC 57.038 50.000 2.73 2.73 0.00 4.09
448 455 3.914426 ATTTGACTGTTATCCCGAGCT 57.086 42.857 0.00 0.00 0.00 4.09
449 456 3.938963 TCAATTTGACTGTTATCCCGAGC 59.061 43.478 0.00 0.00 0.00 5.03
450 457 6.494893 TTTCAATTTGACTGTTATCCCGAG 57.505 37.500 0.00 0.00 0.00 4.63
451 458 6.885952 TTTTCAATTTGACTGTTATCCCGA 57.114 33.333 0.00 0.00 0.00 5.14
476 483 9.777575 CAGTTTTTCTGATTCTTTTTGCATTTT 57.222 25.926 0.00 0.00 46.27 1.82
477 484 9.165035 TCAGTTTTTCTGATTCTTTTTGCATTT 57.835 25.926 0.00 0.00 46.77 2.32
478 485 8.721019 TCAGTTTTTCTGATTCTTTTTGCATT 57.279 26.923 0.00 0.00 46.77 3.56
514 521 9.658475 CGATGAAAACATTTGTCAAAGTTAGTA 57.342 29.630 4.03 0.79 0.00 1.82
515 522 7.647715 CCGATGAAAACATTTGTCAAAGTTAGT 59.352 33.333 4.03 0.00 0.00 2.24
516 523 7.114811 CCCGATGAAAACATTTGTCAAAGTTAG 59.885 37.037 4.03 0.00 0.00 2.34
517 524 6.920758 CCCGATGAAAACATTTGTCAAAGTTA 59.079 34.615 4.03 0.00 0.00 2.24
518 525 5.752955 CCCGATGAAAACATTTGTCAAAGTT 59.247 36.000 4.03 5.89 0.00 2.66
519 526 5.068460 TCCCGATGAAAACATTTGTCAAAGT 59.932 36.000 4.03 0.09 0.00 2.66
520 527 5.527951 TCCCGATGAAAACATTTGTCAAAG 58.472 37.500 4.03 0.00 0.00 2.77
521 528 5.521906 TCCCGATGAAAACATTTGTCAAA 57.478 34.783 0.00 0.00 0.00 2.69
522 529 5.521906 TTCCCGATGAAAACATTTGTCAA 57.478 34.783 0.00 0.00 0.00 3.18
523 530 4.558496 GCTTCCCGATGAAAACATTTGTCA 60.558 41.667 0.00 0.00 31.06 3.58
524 531 3.920412 GCTTCCCGATGAAAACATTTGTC 59.080 43.478 0.00 0.00 31.06 3.18
525 532 3.320541 TGCTTCCCGATGAAAACATTTGT 59.679 39.130 0.00 0.00 31.06 2.83
526 533 3.911868 TGCTTCCCGATGAAAACATTTG 58.088 40.909 0.00 0.00 31.06 2.32
527 534 4.806640 ATGCTTCCCGATGAAAACATTT 57.193 36.364 0.00 0.00 29.79 2.32
528 535 4.806640 AATGCTTCCCGATGAAAACATT 57.193 36.364 8.48 8.48 36.07 2.71
529 536 4.220382 TCAAATGCTTCCCGATGAAAACAT 59.780 37.500 0.00 0.00 33.46 2.71
530 537 3.571828 TCAAATGCTTCCCGATGAAAACA 59.428 39.130 0.00 0.00 31.06 2.83
531 538 4.168760 CTCAAATGCTTCCCGATGAAAAC 58.831 43.478 0.00 0.00 31.06 2.43
532 539 3.367292 GCTCAAATGCTTCCCGATGAAAA 60.367 43.478 0.00 0.00 31.06 2.29
533 540 2.164219 GCTCAAATGCTTCCCGATGAAA 59.836 45.455 0.00 0.00 31.06 2.69
534 541 1.745087 GCTCAAATGCTTCCCGATGAA 59.255 47.619 0.00 0.00 0.00 2.57
535 542 1.065199 AGCTCAAATGCTTCCCGATGA 60.065 47.619 0.00 0.00 40.93 2.92
536 543 1.332997 GAGCTCAAATGCTTCCCGATG 59.667 52.381 9.40 0.00 44.17 3.84
537 544 1.673168 GAGCTCAAATGCTTCCCGAT 58.327 50.000 9.40 0.00 44.17 4.18
538 545 0.740868 CGAGCTCAAATGCTTCCCGA 60.741 55.000 15.40 0.00 44.17 5.14
539 546 1.709147 CCGAGCTCAAATGCTTCCCG 61.709 60.000 15.40 0.00 44.17 5.14
540 547 1.379642 CCCGAGCTCAAATGCTTCCC 61.380 60.000 15.40 0.00 44.17 3.97
541 548 0.678048 ACCCGAGCTCAAATGCTTCC 60.678 55.000 15.40 0.00 44.17 3.46
542 549 0.729690 GACCCGAGCTCAAATGCTTC 59.270 55.000 15.40 0.00 44.17 3.86
543 550 0.678048 GGACCCGAGCTCAAATGCTT 60.678 55.000 15.40 0.00 44.17 3.91
545 552 1.372087 CTGGACCCGAGCTCAAATGC 61.372 60.000 15.40 3.59 0.00 3.56
546 553 0.250234 TCTGGACCCGAGCTCAAATG 59.750 55.000 15.40 0.79 0.00 2.32
547 554 1.207791 ATCTGGACCCGAGCTCAAAT 58.792 50.000 15.40 0.00 0.00 2.32
548 555 1.480954 GTATCTGGACCCGAGCTCAAA 59.519 52.381 15.40 0.00 0.00 2.69
549 556 1.112113 GTATCTGGACCCGAGCTCAA 58.888 55.000 15.40 0.00 0.00 3.02
550 557 0.259065 AGTATCTGGACCCGAGCTCA 59.741 55.000 15.40 0.00 0.00 4.26
551 558 0.955905 GAGTATCTGGACCCGAGCTC 59.044 60.000 2.73 2.73 0.00 4.09
552 559 0.468400 GGAGTATCTGGACCCGAGCT 60.468 60.000 0.00 0.00 33.73 4.09
553 560 0.755698 TGGAGTATCTGGACCCGAGC 60.756 60.000 0.00 0.00 33.73 5.03
554 561 1.033574 GTGGAGTATCTGGACCCGAG 58.966 60.000 0.00 0.00 33.73 4.63
555 562 0.629596 AGTGGAGTATCTGGACCCGA 59.370 55.000 0.00 0.00 33.73 5.14
556 563 1.409427 GAAGTGGAGTATCTGGACCCG 59.591 57.143 0.00 0.00 33.73 5.28
557 564 1.763545 GGAAGTGGAGTATCTGGACCC 59.236 57.143 0.00 0.00 33.73 4.46
558 565 2.467880 TGGAAGTGGAGTATCTGGACC 58.532 52.381 0.00 0.00 33.73 4.46
559 566 4.553330 TTTGGAAGTGGAGTATCTGGAC 57.447 45.455 0.00 0.00 33.73 4.02
560 567 4.080356 CCATTTGGAAGTGGAGTATCTGGA 60.080 45.833 0.00 0.00 37.72 3.86
561 568 4.080356 TCCATTTGGAAGTGGAGTATCTGG 60.080 45.833 0.00 0.00 42.18 3.86
562 569 5.102953 TCCATTTGGAAGTGGAGTATCTG 57.897 43.478 0.00 0.00 42.18 2.90
582 589 4.158394 ACACATGTGCAAATATGGACTTCC 59.842 41.667 25.68 0.00 46.97 3.46
583 590 5.314923 ACACATGTGCAAATATGGACTTC 57.685 39.130 25.68 0.00 46.97 3.01
584 591 8.570488 CATATACACATGTGCAAATATGGACTT 58.430 33.333 28.36 12.44 46.97 3.01
585 592 7.720957 ACATATACACATGTGCAAATATGGACT 59.279 33.333 33.03 22.17 46.97 3.85
586 593 7.804600 CACATATACACATGTGCAAATATGGAC 59.195 37.037 33.03 0.00 46.66 4.02
587 594 7.873910 CACATATACACATGTGCAAATATGGA 58.126 34.615 33.03 14.87 46.66 3.41
598 605 6.931281 GCATAGAGAACCACATATACACATGT 59.069 38.462 0.00 0.00 39.76 3.21
599 606 6.930722 TGCATAGAGAACCACATATACACATG 59.069 38.462 0.00 0.00 0.00 3.21
600 607 7.066307 TGCATAGAGAACCACATATACACAT 57.934 36.000 0.00 0.00 0.00 3.21
601 608 6.478512 TGCATAGAGAACCACATATACACA 57.521 37.500 0.00 0.00 0.00 3.72
602 609 6.369890 CCATGCATAGAGAACCACATATACAC 59.630 42.308 0.00 0.00 0.00 2.90
603 610 6.466812 CCATGCATAGAGAACCACATATACA 58.533 40.000 0.00 0.00 0.00 2.29
604 611 5.352569 GCCATGCATAGAGAACCACATATAC 59.647 44.000 0.00 0.00 0.00 1.47
605 612 5.249163 AGCCATGCATAGAGAACCACATATA 59.751 40.000 0.00 0.00 0.00 0.86
920 932 1.799994 CCGGCCAAGAAATGCAAAAAG 59.200 47.619 2.24 0.00 0.00 2.27
1057 1073 1.077429 CCCAGCCTTGAAGGGTAGC 60.077 63.158 16.47 0.00 45.88 3.58
1120 1136 1.002544 GACAAGGTCAAGGGAGGAGTG 59.997 57.143 0.00 0.00 32.09 3.51
1191 5291 3.629858 GCGGAATGCAGATTTGGAC 57.370 52.632 0.00 0.00 45.45 4.02
1255 5367 2.043115 TGTGAGGACCACTGATAGGAGT 59.957 50.000 0.00 0.00 45.86 3.85
1262 5374 1.272490 GTCGATTGTGAGGACCACTGA 59.728 52.381 0.00 0.00 45.86 3.41
1265 5380 2.386661 ATGTCGATTGTGAGGACCAC 57.613 50.000 0.00 0.00 45.88 4.16
1334 5449 4.456280 AGCAAAATTTCTTCCCGAATCC 57.544 40.909 0.00 0.00 0.00 3.01
1505 5635 1.549203 ATTGGGTGATGCAAGTGGAC 58.451 50.000 0.00 0.00 0.00 4.02
1554 5696 6.599244 CACTTCCAACTAGCCAATCAAATAGA 59.401 38.462 0.00 0.00 0.00 1.98
1568 5710 4.602340 GACCAAGAGTCACTTCCAACTA 57.398 45.455 0.00 0.00 45.55 2.24
1613 5756 5.066375 TCCAATTCCACGATCTGCTTTATTG 59.934 40.000 0.00 0.00 0.00 1.90
1751 5894 4.522789 CCACTAGCCATGGTTTTAAACACT 59.477 41.667 14.67 0.54 32.08 3.55
1853 5996 3.371917 GGGATTGATTGACATGTCCAGGA 60.372 47.826 22.85 7.04 36.21 3.86
1935 6495 3.181429 TGCAAGAAAAGGGTGGATCTCTT 60.181 43.478 0.00 0.00 38.72 2.85
1941 6501 3.576550 GGTTAATGCAAGAAAAGGGTGGA 59.423 43.478 0.00 0.00 0.00 4.02
1947 6507 4.917415 CGTTCTGGGTTAATGCAAGAAAAG 59.083 41.667 0.00 0.00 0.00 2.27
2038 6598 2.168313 TCGCAAGATCAGGCTCATTACA 59.832 45.455 6.99 0.00 45.01 2.41
2166 6729 3.211045 AGGTTGTAGTTGTTGCGTCAAT 58.789 40.909 0.00 0.00 0.00 2.57
2554 7118 8.235226 GCTTGGGTACTTCTAATTAGTTTGAAC 58.765 37.037 12.19 5.96 0.00 3.18
2637 7201 8.674607 AGAAAGTAGTAAAACACTCAAACCTTG 58.325 33.333 0.00 0.00 38.80 3.61
2640 7204 9.926751 GTTAGAAAGTAGTAAAACACTCAAACC 57.073 33.333 0.00 0.00 38.80 3.27
2762 7326 4.518249 GGGGATTCAGTTCTCTAAACCTG 58.482 47.826 0.00 0.00 0.00 4.00
2763 7327 3.197983 CGGGGATTCAGTTCTCTAAACCT 59.802 47.826 0.00 0.00 0.00 3.50
2765 7329 4.467198 TCGGGGATTCAGTTCTCTAAAC 57.533 45.455 0.00 0.00 0.00 2.01
2829 7394 6.998074 TCAAAAACGCTCTTATATCATGGGAT 59.002 34.615 0.00 0.00 37.55 3.85
2848 7413 4.399219 TCCGTCCCATAATGTGTCAAAAA 58.601 39.130 0.00 0.00 0.00 1.94
2850 7415 3.605634 CTCCGTCCCATAATGTGTCAAA 58.394 45.455 0.00 0.00 0.00 2.69
2896 7461 6.959639 AGAGAAGTTGAGCCAAACATTAAA 57.040 33.333 2.32 0.00 32.21 1.52
2971 7536 9.904198 TTATATCCATTCTTTGATGTCTGAACA 57.096 29.630 0.00 0.00 40.38 3.18
3033 7598 6.992715 CCCTTAGCAGCAGTTTGTAGTATATT 59.007 38.462 0.00 0.00 0.00 1.28
3068 7633 3.667360 ACCAATTTCAGCAAATGCCTTC 58.333 40.909 0.94 0.00 43.38 3.46
3081 7646 8.506168 TCCTGTTCATGTAGATAACCAATTTC 57.494 34.615 0.00 0.00 0.00 2.17
3082 7647 8.877864 TTCCTGTTCATGTAGATAACCAATTT 57.122 30.769 0.00 0.00 0.00 1.82
3083 7648 8.877864 TTTCCTGTTCATGTAGATAACCAATT 57.122 30.769 0.00 0.00 0.00 2.32
3084 7649 8.877864 TTTTCCTGTTCATGTAGATAACCAAT 57.122 30.769 0.00 0.00 0.00 3.16
3085 7650 8.877864 ATTTTCCTGTTCATGTAGATAACCAA 57.122 30.769 0.00 0.00 0.00 3.67
3086 7651 8.106462 TGATTTTCCTGTTCATGTAGATAACCA 58.894 33.333 0.00 0.00 0.00 3.67
3087 7652 8.398665 GTGATTTTCCTGTTCATGTAGATAACC 58.601 37.037 0.00 0.00 0.00 2.85
3297 7866 4.271776 GGCCAATGCATAAATTGAGCTTTC 59.728 41.667 0.00 0.00 39.46 2.62
3322 7891 7.491682 AGAGTTTTTGACTATTTGTGTGCATT 58.508 30.769 0.00 0.00 39.19 3.56
3325 7894 6.972328 TGAAGAGTTTTTGACTATTTGTGTGC 59.028 34.615 0.00 0.00 39.78 4.57
3354 7923 0.824759 GAGGGGAATGACGCTAGTGT 59.175 55.000 9.11 9.11 33.39 3.55
3480 8049 2.816087 CCTTCACCATCTTGTTGTCCAG 59.184 50.000 0.00 0.00 0.00 3.86
3484 8053 2.586425 CCACCTTCACCATCTTGTTGT 58.414 47.619 0.00 0.00 0.00 3.32
3487 8056 0.606401 CGCCACCTTCACCATCTTGT 60.606 55.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.