Multiple sequence alignment - TraesCS7A01G470400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G470400 chr7A 100.000 7141 0 0 992 8132 666613664 666606524 0.000000e+00 13188.0
1 TraesCS7A01G470400 chr7A 100.000 767 0 0 1 767 666614655 666613889 0.000000e+00 1417.0
2 TraesCS7A01G470400 chr7D 91.320 6728 313 92 1282 7913 575871333 575864781 0.000000e+00 8938.0
3 TraesCS7A01G470400 chr7D 90.301 763 38 12 8 761 575872357 575871622 0.000000e+00 966.0
4 TraesCS7A01G470400 chr7D 97.328 262 5 2 992 1252 575871592 575871332 2.080000e-120 444.0
5 TraesCS7A01G470400 chr7D 95.312 192 5 1 7940 8131 575864788 575864601 1.330000e-77 302.0
6 TraesCS7A01G470400 chr7B 90.198 2469 157 32 1801 4246 638076102 638073696 0.000000e+00 3140.0
7 TraesCS7A01G470400 chr7B 90.633 1548 107 19 5677 7194 638072234 638070695 0.000000e+00 2021.0
8 TraesCS7A01G470400 chr7B 85.042 1317 149 24 4249 5551 638073626 638072344 0.000000e+00 1297.0
9 TraesCS7A01G470400 chr7B 89.292 551 27 14 235 766 638077547 638077010 0.000000e+00 662.0
10 TraesCS7A01G470400 chr7B 87.041 463 25 15 7486 7920 638070483 638070028 2.640000e-134 490.0
11 TraesCS7A01G470400 chr7B 92.470 332 22 1 1369 1697 638076436 638076105 9.550000e-129 472.0
12 TraesCS7A01G470400 chr7B 95.192 208 6 3 992 1195 638076964 638076757 7.870000e-85 326.0
13 TraesCS7A01G470400 chr7B 90.667 225 17 3 7229 7452 638070700 638070479 6.170000e-76 296.0
14 TraesCS7A01G470400 chr7B 89.744 195 8 8 7944 8131 638070040 638069851 1.050000e-58 239.0
15 TraesCS7A01G470400 chr7B 97.917 48 1 0 1291 1338 638076743 638076696 5.230000e-12 84.2
16 TraesCS7A01G470400 chr1B 86.916 428 47 4 5149 5574 7248901 7248481 9.550000e-129 472.0
17 TraesCS7A01G470400 chr6D 85.827 381 44 5 5196 5574 157316439 157316067 5.910000e-106 396.0
18 TraesCS7A01G470400 chr2A 92.553 94 7 0 1201 1294 424544358 424544451 1.420000e-27 135.0
19 TraesCS7A01G470400 chr2A 92.473 93 7 0 1202 1294 455350209 455350301 5.120000e-27 134.0
20 TraesCS7A01G470400 chr2A 91.398 93 8 0 1202 1294 424544451 424544359 2.380000e-25 128.0
21 TraesCS7A01G470400 chr2D 92.473 93 6 1 1202 1294 480132086 480131995 1.840000e-26 132.0
22 TraesCS7A01G470400 chr2B 92.473 93 5 2 1202 1294 732865254 732865164 1.840000e-26 132.0
23 TraesCS7A01G470400 chr2B 90.625 96 7 2 1199 1294 732865161 732865254 8.570000e-25 126.0
24 TraesCS7A01G470400 chr5A 91.398 93 5 2 1202 1294 229490655 229490744 3.080000e-24 124.0
25 TraesCS7A01G470400 chr1D 89.000 100 8 1 1195 1294 181632811 181632907 3.990000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G470400 chr7A 666606524 666614655 8131 True 7302.50 13188 100.00000 1 8132 2 chr7A.!!$R1 8131
1 TraesCS7A01G470400 chr7D 575864601 575872357 7756 True 2662.50 8938 93.56525 8 8131 4 chr7D.!!$R1 8123
2 TraesCS7A01G470400 chr7B 638069851 638077547 7696 True 902.72 3140 90.81960 235 8131 10 chr7B.!!$R1 7896

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 430 1.009829 GTGACGCCATTGATGAGTCC 58.990 55.000 13.14 5.45 35.73 3.85 F
1356 1394 0.106769 ATGTGCTGGTGTTGTGTGGA 60.107 50.000 0.00 0.00 0.00 4.02 F
2306 2591 0.393820 AGCACGACGGGTTCCTTTTA 59.606 50.000 0.00 0.00 0.00 1.52 F
2404 2689 0.606401 AGTTCACGTTGATGCAGGGG 60.606 55.000 0.00 0.00 0.00 4.79 F
3793 4098 1.303155 AGAGGCTGCCAGTTTGCTC 60.303 57.895 22.65 7.62 0.00 4.26 F
5079 5463 0.464373 AGCATCCAGTAATGGGCACG 60.464 55.000 9.77 0.00 0.00 5.34 F
6066 6494 0.106149 ACGGCCTCGAGTTTTTCACT 59.894 50.000 12.31 0.00 39.07 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2357 2642 0.539986 TTGGGGATAGAGTGCGAACC 59.460 55.000 0.00 0.0 0.00 3.62 R
2449 2734 0.670162 GCAGTTGCTCCTTTGCTCAA 59.330 50.000 0.00 0.0 38.21 3.02 R
3720 4025 3.065925 GCTGACACTATTGGGAAGATTGC 59.934 47.826 0.00 0.0 0.00 3.56 R
4310 4684 0.320374 TGTCAGCCACTTTCTACCGG 59.680 55.000 0.00 0.0 0.00 5.28 R
5289 5673 2.749044 AGCGGCCAACTCTGCATG 60.749 61.111 2.24 0.0 40.71 4.06 R
6570 7003 0.309302 CCTCTCTGTATGGCGTCGAG 59.691 60.000 0.00 0.0 0.00 4.04 R
7922 8415 0.179034 ATCGGCAAGAGCTCCCAATC 60.179 55.000 10.93 0.0 41.70 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.418342 CGATTGACGTACTTGGGCCG 61.418 60.000 0.00 0.00 37.22 6.13
48 49 2.686106 ACGTACTTGGGCCGGGAT 60.686 61.111 2.18 0.00 0.00 3.85
65 66 3.466791 ATGATCCCCTGGAAGCGCG 62.467 63.158 0.00 0.00 34.34 6.86
81 82 1.281353 GCGTGCCGTCAAATCACAA 59.719 52.632 0.00 0.00 0.00 3.33
89 90 3.058293 GCCGTCAAATCACAAAGTCATCA 60.058 43.478 0.00 0.00 0.00 3.07
122 123 7.338196 TGTGAATGAAAAGTCCTAACTTCACAA 59.662 33.333 11.17 0.00 45.07 3.33
123 124 7.857885 GTGAATGAAAAGTCCTAACTTCACAAG 59.142 37.037 0.00 0.00 45.07 3.16
125 126 5.189928 TGAAAAGTCCTAACTTCACAAGCA 58.810 37.500 0.00 0.00 45.07 3.91
129 130 3.118038 AGTCCTAACTTCACAAGCAACCA 60.118 43.478 0.00 0.00 28.74 3.67
146 147 4.499183 CAACCAAACCAACAAAAGCTACA 58.501 39.130 0.00 0.00 0.00 2.74
150 151 4.744631 CCAAACCAACAAAAGCTACATGAC 59.255 41.667 0.00 0.00 0.00 3.06
163 164 9.840427 AAAAGCTACATGACACATTAACATAAC 57.160 29.630 0.00 0.00 0.00 1.89
188 189 4.101585 TCATCAGATCTGAATAACCGGCTT 59.898 41.667 28.40 5.93 43.58 4.35
224 225 1.065418 AGGCCGGAGACAACATTTAGG 60.065 52.381 5.05 0.00 0.00 2.69
255 256 1.270839 ACGAGACAGACAAATGGTGGG 60.271 52.381 0.00 0.00 0.00 4.61
394 402 5.702349 AGCATTCTTGTGGAGAGAAAAAG 57.298 39.130 0.00 0.00 36.77 2.27
418 426 2.938451 GAGAATGTGACGCCATTGATGA 59.062 45.455 0.85 0.00 35.24 2.92
422 430 1.009829 GTGACGCCATTGATGAGTCC 58.990 55.000 13.14 5.45 35.73 3.85
451 460 2.033448 GTGTCCCGCCATTGACCA 59.967 61.111 0.00 0.00 0.00 4.02
453 462 3.124921 GTCCCGCCATTGACCACG 61.125 66.667 0.00 0.00 0.00 4.94
454 463 4.402528 TCCCGCCATTGACCACGG 62.403 66.667 0.00 0.00 45.21 4.94
456 465 4.402528 CCGCCATTGACCACGGGA 62.403 66.667 0.00 0.00 41.95 5.14
479 488 3.743017 GGCAGCCAATGGGGGAGA 61.743 66.667 6.55 0.00 37.04 3.71
656 681 1.270893 GGGCACGAGGGGAGAATAATC 60.271 57.143 0.00 0.00 0.00 1.75
712 749 2.115911 ACTAGCTCCACTCTCGCCG 61.116 63.158 0.00 0.00 0.00 6.46
731 768 1.528129 GCCGAATCAATCAGGATCCC 58.472 55.000 8.55 0.00 0.00 3.85
732 769 1.884067 GCCGAATCAATCAGGATCCCC 60.884 57.143 8.55 0.00 0.00 4.81
766 803 3.873812 CTAATCCGGCCGGCCCTT 61.874 66.667 39.89 30.26 34.68 3.95
1250 1288 6.309980 GTCGCAGAAATGGATGTATCATCTAG 59.690 42.308 9.16 0.00 39.69 2.43
1251 1289 6.209391 TCGCAGAAATGGATGTATCATCTAGA 59.791 38.462 0.00 0.00 0.00 2.43
1252 1290 7.040494 CGCAGAAATGGATGTATCATCTAGAT 58.960 38.462 0.00 0.00 40.86 1.98
1253 1291 8.193438 CGCAGAAATGGATGTATCATCTAGATA 58.807 37.037 4.54 0.00 38.19 1.98
1267 1305 7.307131 TCATCTAGATACATCCATTTCTGCA 57.693 36.000 4.54 0.00 0.00 4.41
1268 1306 7.738847 TCATCTAGATACATCCATTTCTGCAA 58.261 34.615 4.54 0.00 0.00 4.08
1269 1307 7.658982 TCATCTAGATACATCCATTTCTGCAAC 59.341 37.037 4.54 0.00 0.00 4.17
1270 1308 6.888105 TCTAGATACATCCATTTCTGCAACA 58.112 36.000 0.00 0.00 0.00 3.33
1271 1309 7.512130 TCTAGATACATCCATTTCTGCAACAT 58.488 34.615 0.00 0.00 0.00 2.71
1272 1310 6.387041 AGATACATCCATTTCTGCAACATG 57.613 37.500 0.00 0.00 0.00 3.21
1273 1311 5.889853 AGATACATCCATTTCTGCAACATGT 59.110 36.000 0.00 0.00 0.00 3.21
1274 1312 7.056006 AGATACATCCATTTCTGCAACATGTA 58.944 34.615 0.00 0.00 31.61 2.29
1275 1313 5.981088 ACATCCATTTCTGCAACATGTAA 57.019 34.783 0.00 0.00 0.00 2.41
1276 1314 6.534475 ACATCCATTTCTGCAACATGTAAT 57.466 33.333 0.00 0.00 0.00 1.89
1277 1315 6.938507 ACATCCATTTCTGCAACATGTAATT 58.061 32.000 0.00 0.00 0.00 1.40
1278 1316 7.037438 ACATCCATTTCTGCAACATGTAATTC 58.963 34.615 0.00 0.00 0.00 2.17
1279 1317 6.587206 TCCATTTCTGCAACATGTAATTCA 57.413 33.333 0.00 0.00 0.00 2.57
1280 1318 6.623486 TCCATTTCTGCAACATGTAATTCAG 58.377 36.000 0.00 4.60 0.00 3.02
1349 1387 5.531634 CAGTTAAATCAATGTGCTGGTGTT 58.468 37.500 0.00 0.00 0.00 3.32
1350 1388 5.403166 CAGTTAAATCAATGTGCTGGTGTTG 59.597 40.000 0.00 0.00 0.00 3.33
1351 1389 5.068987 AGTTAAATCAATGTGCTGGTGTTGT 59.931 36.000 0.00 0.00 0.00 3.32
1352 1390 3.374220 AATCAATGTGCTGGTGTTGTG 57.626 42.857 0.00 0.00 0.00 3.33
1353 1391 1.761449 TCAATGTGCTGGTGTTGTGT 58.239 45.000 0.00 0.00 0.00 3.72
1354 1392 1.404748 TCAATGTGCTGGTGTTGTGTG 59.595 47.619 0.00 0.00 0.00 3.82
1356 1394 0.106769 ATGTGCTGGTGTTGTGTGGA 60.107 50.000 0.00 0.00 0.00 4.02
1359 1397 1.148273 GCTGGTGTTGTGTGGAGGA 59.852 57.895 0.00 0.00 0.00 3.71
1360 1398 0.465460 GCTGGTGTTGTGTGGAGGAA 60.465 55.000 0.00 0.00 0.00 3.36
1362 1400 0.916086 TGGTGTTGTGTGGAGGAAGT 59.084 50.000 0.00 0.00 0.00 3.01
1392 1659 6.538021 AGCATTTAATTGTGTGTTTTGCTTGA 59.462 30.769 0.00 0.00 34.47 3.02
1482 1749 1.546476 GATGTCGTCAAGGACCTCACT 59.454 52.381 0.00 0.00 36.07 3.41
1489 1756 3.756117 GTCAAGGACCTCACTTCCAATT 58.244 45.455 0.00 0.00 35.33 2.32
1513 1780 1.868713 TGGCAACCCTCGTATCCTTA 58.131 50.000 0.00 0.00 0.00 2.69
1549 1816 7.298122 TCGAGAGACATTGTTTTATTTCTTGC 58.702 34.615 0.00 0.00 33.31 4.01
1577 1844 1.724623 GTATGCGTTGCGAGTTCTTGA 59.275 47.619 0.00 0.00 0.00 3.02
1586 1853 1.363744 CGAGTTCTTGAGGATGTGGC 58.636 55.000 0.00 0.00 0.00 5.01
1685 1955 4.536489 AGGTACCTTTCTGGCTTGTATCTT 59.464 41.667 9.21 0.00 40.22 2.40
1697 1967 4.319177 GCTTGTATCTTGTCAGTCCTGTT 58.681 43.478 0.00 0.00 0.00 3.16
1708 1978 8.154203 TCTTGTCAGTCCTGTTTACATAATCAA 58.846 33.333 0.00 0.00 0.00 2.57
1709 1979 7.667043 TGTCAGTCCTGTTTACATAATCAAC 57.333 36.000 0.00 0.00 0.00 3.18
1724 1994 8.406172 ACATAATCAACGGCAATAAACATTTC 57.594 30.769 0.00 0.00 0.00 2.17
1732 2002 5.708230 ACGGCAATAAACATTTCTAAGACCA 59.292 36.000 0.00 0.00 0.00 4.02
1736 2006 7.061789 GGCAATAAACATTTCTAAGACCAAACG 59.938 37.037 0.00 0.00 0.00 3.60
1790 2071 4.098960 CCAATGCTGATGAGGTTATTTGCT 59.901 41.667 0.00 0.00 0.00 3.91
1791 2072 4.913335 ATGCTGATGAGGTTATTTGCTG 57.087 40.909 0.00 0.00 0.00 4.41
1794 2075 4.635765 TGCTGATGAGGTTATTTGCTGTAC 59.364 41.667 0.00 0.00 0.00 2.90
1824 2105 5.635280 CCATTCATGTCCTAATGTAGCTACG 59.365 44.000 18.74 4.48 32.34 3.51
1844 2125 3.630769 ACGAGTGTCTGTCTCAACTTACA 59.369 43.478 0.00 0.00 32.79 2.41
1845 2126 4.097437 ACGAGTGTCTGTCTCAACTTACAA 59.903 41.667 0.00 0.00 32.79 2.41
1846 2127 4.677378 CGAGTGTCTGTCTCAACTTACAAG 59.323 45.833 0.00 0.00 32.79 3.16
1933 2214 7.168637 CCTGTCATTGTGATTGAAAGTTTGAAG 59.831 37.037 0.00 0.00 28.05 3.02
2134 2419 3.843422 TGGTGAATGTTTTCCATGGAGT 58.157 40.909 15.53 0.00 32.82 3.85
2164 2449 4.937620 AGCTGTTACATGTACACAATGGAG 59.062 41.667 4.68 3.35 0.00 3.86
2220 2505 7.845066 ATCCTTCCGTTAAAATTCTCAGTAC 57.155 36.000 0.00 0.00 0.00 2.73
2238 2523 7.015292 TCTCAGTACCAGATCACAACTTTACTT 59.985 37.037 0.00 0.00 0.00 2.24
2244 2529 5.334414 CCAGATCACAACTTTACTTGTCTGC 60.334 44.000 0.00 0.00 31.73 4.26
2247 2532 5.284861 TCACAACTTTACTTGTCTGCCTA 57.715 39.130 0.00 0.00 31.73 3.93
2260 2545 4.697514 TGTCTGCCTAGTTGAAGCATATC 58.302 43.478 0.00 0.00 35.64 1.63
2276 2561 4.021280 AGCATATCACCTCTGCTGACATAG 60.021 45.833 0.00 0.00 44.21 2.23
2304 2589 0.611714 ATAGCACGACGGGTTCCTTT 59.388 50.000 0.00 0.00 0.00 3.11
2306 2591 0.393820 AGCACGACGGGTTCCTTTTA 59.606 50.000 0.00 0.00 0.00 1.52
2314 2599 4.482386 GACGGGTTCCTTTTAAATTCAGC 58.518 43.478 0.00 0.00 0.00 4.26
2317 2602 4.864247 CGGGTTCCTTTTAAATTCAGCATG 59.136 41.667 0.00 0.00 37.54 4.06
2318 2603 4.631377 GGGTTCCTTTTAAATTCAGCATGC 59.369 41.667 10.51 10.51 34.76 4.06
2329 2614 9.709495 TTTAAATTCAGCATGCTCAATAGTTTT 57.291 25.926 17.74 11.08 34.76 2.43
2332 2617 5.963176 TCAGCATGCTCAATAGTTTTTCA 57.037 34.783 19.68 0.00 34.76 2.69
2362 2647 8.810652 TGAAATTTAGGAAGAAAAATGGTTCG 57.189 30.769 0.00 0.00 32.50 3.95
2363 2648 7.383843 TGAAATTTAGGAAGAAAAATGGTTCGC 59.616 33.333 0.00 0.00 32.50 4.70
2364 2649 5.776173 TTTAGGAAGAAAAATGGTTCGCA 57.224 34.783 0.00 0.00 32.50 5.10
2365 2650 3.643159 AGGAAGAAAAATGGTTCGCAC 57.357 42.857 0.00 0.00 32.50 5.34
2366 2651 3.222603 AGGAAGAAAAATGGTTCGCACT 58.777 40.909 0.00 0.00 32.50 4.40
2367 2652 3.253432 AGGAAGAAAAATGGTTCGCACTC 59.747 43.478 0.00 0.00 32.50 3.51
2368 2653 3.253432 GGAAGAAAAATGGTTCGCACTCT 59.747 43.478 0.00 0.00 32.50 3.24
2369 2654 4.454504 GGAAGAAAAATGGTTCGCACTCTA 59.545 41.667 0.00 0.00 32.50 2.43
2370 2655 5.123979 GGAAGAAAAATGGTTCGCACTCTAT 59.876 40.000 0.00 0.00 32.50 1.98
2371 2656 5.803020 AGAAAAATGGTTCGCACTCTATC 57.197 39.130 0.00 0.00 32.50 2.08
2372 2657 4.636206 AGAAAAATGGTTCGCACTCTATCC 59.364 41.667 0.00 0.00 32.50 2.59
2373 2658 2.622064 AATGGTTCGCACTCTATCCC 57.378 50.000 0.00 0.00 0.00 3.85
2374 2659 0.759346 ATGGTTCGCACTCTATCCCC 59.241 55.000 0.00 0.00 0.00 4.81
2391 2676 3.551846 TCCCCAAAGTTGAGAAGTTCAC 58.448 45.455 5.50 0.00 34.94 3.18
2404 2689 0.606401 AGTTCACGTTGATGCAGGGG 60.606 55.000 0.00 0.00 0.00 4.79
2418 2703 4.156455 TGCAGGGGATCTTGTAGAATTC 57.844 45.455 0.00 0.00 0.00 2.17
2614 2899 3.831323 TGTCAGAATGGAAGCCTTTCAA 58.169 40.909 12.71 0.90 39.29 2.69
2638 2924 4.261031 CGGTTTCAGGTAAAGTTTGTCAGG 60.261 45.833 0.00 0.00 0.00 3.86
2654 2940 4.521130 GTCAGGATGGCATCTATCGTTA 57.479 45.455 25.48 3.73 43.01 3.18
2655 2941 4.883083 GTCAGGATGGCATCTATCGTTAA 58.117 43.478 25.48 2.30 43.01 2.01
2666 2952 8.244113 TGGCATCTATCGTTAATCACATACTAG 58.756 37.037 0.00 0.00 0.00 2.57
2682 2968 8.918116 TCACATACTAGCAAGATCTTATGTTCT 58.082 33.333 14.00 7.30 29.68 3.01
2707 2993 6.384595 TGTTATACTAGTTGGTCAATGGGCTA 59.615 38.462 0.00 0.00 0.00 3.93
2721 3007 7.231519 GGTCAATGGGCTAGAGCTTATATTTTT 59.768 37.037 0.81 0.00 41.70 1.94
2820 3109 4.697828 TGCAACTTATTTGTCCGCATTCTA 59.302 37.500 0.00 0.00 37.54 2.10
2887 3176 4.667573 TCAAGCCCAATTGTTGTACCATA 58.332 39.130 4.43 0.00 0.00 2.74
2888 3177 4.461081 TCAAGCCCAATTGTTGTACCATAC 59.539 41.667 4.43 0.00 0.00 2.39
2889 3178 4.316025 AGCCCAATTGTTGTACCATACT 57.684 40.909 4.43 0.00 0.00 2.12
2890 3179 5.444744 AGCCCAATTGTTGTACCATACTA 57.555 39.130 4.43 0.00 0.00 1.82
2891 3180 5.190677 AGCCCAATTGTTGTACCATACTAC 58.809 41.667 4.43 0.00 35.46 2.73
2892 3181 4.337274 GCCCAATTGTTGTACCATACTACC 59.663 45.833 4.43 0.00 34.27 3.18
2893 3182 5.502079 CCCAATTGTTGTACCATACTACCA 58.498 41.667 4.43 0.00 34.27 3.25
2894 3183 6.126409 CCCAATTGTTGTACCATACTACCAT 58.874 40.000 4.43 0.00 34.27 3.55
2915 3204 8.518430 ACCATGCAATGTACATAAATAACTCA 57.482 30.769 9.21 0.00 44.81 3.41
2937 3226 7.550906 ACTCAAATATCTAACTGCAGAAGTTCC 59.449 37.037 23.35 0.00 46.60 3.62
2956 3245 6.653989 AGTTCCTTCTTCAAACTCTGAAAGA 58.346 36.000 0.00 0.00 43.54 2.52
3033 3333 6.670695 AGCCAAATTTAAAGTTCCACTCAT 57.329 33.333 0.00 0.00 0.00 2.90
3036 3336 7.657354 AGCCAAATTTAAAGTTCCACTCATTTC 59.343 33.333 0.00 0.00 0.00 2.17
3038 3338 9.492973 CCAAATTTAAAGTTCCACTCATTTCAT 57.507 29.630 0.00 0.00 0.00 2.57
3060 3360 6.264292 TCATTAAACATTTGTGCTGGTGTAGT 59.736 34.615 0.00 0.00 0.00 2.73
3061 3361 6.458232 TTAAACATTTGTGCTGGTGTAGTT 57.542 33.333 0.00 0.00 0.00 2.24
3062 3362 7.569639 TTAAACATTTGTGCTGGTGTAGTTA 57.430 32.000 0.00 0.00 0.00 2.24
3063 3363 6.648879 AAACATTTGTGCTGGTGTAGTTAT 57.351 33.333 0.00 0.00 0.00 1.89
3064 3364 6.648879 AACATTTGTGCTGGTGTAGTTATT 57.351 33.333 0.00 0.00 0.00 1.40
3065 3365 7.753309 AACATTTGTGCTGGTGTAGTTATTA 57.247 32.000 0.00 0.00 0.00 0.98
3066 3366 7.753309 ACATTTGTGCTGGTGTAGTTATTAA 57.247 32.000 0.00 0.00 0.00 1.40
3067 3367 7.590279 ACATTTGTGCTGGTGTAGTTATTAAC 58.410 34.615 0.00 0.00 0.00 2.01
3306 3609 9.927081 ACAATCAATTTCTCTAAGGGTTATCAT 57.073 29.630 0.00 0.00 0.00 2.45
3539 3843 5.659463 TGTGACCAATTGCTATATTTTGGC 58.341 37.500 0.00 0.00 41.89 4.52
3585 3890 5.245531 CAACTGGTCTTGGTGCTCTAATTA 58.754 41.667 0.00 0.00 0.00 1.40
3730 4035 8.785329 TTTATTTAATTGTTGGCAATCTTCCC 57.215 30.769 1.92 0.00 43.89 3.97
3793 4098 1.303155 AGAGGCTGCCAGTTTGCTC 60.303 57.895 22.65 7.62 0.00 4.26
3840 4145 6.422701 GGTTTTGTGTTGCCCTACTTAATTTC 59.577 38.462 0.00 0.00 0.00 2.17
3957 4262 9.357652 CATTGACTTTGTTCAGAAAAGAAAGAA 57.642 29.630 12.59 1.04 37.91 2.52
4051 4356 8.719645 AGATAATTGAGATGCTAACTACCTCT 57.280 34.615 0.00 0.00 0.00 3.69
4074 4379 5.312895 TGCCATTGCACGGTATCTATTAAT 58.687 37.500 3.38 0.00 44.23 1.40
4160 4465 3.264947 GCACACATCATCTCTTGCTACA 58.735 45.455 0.00 0.00 0.00 2.74
4228 4533 9.807649 GAAAAATGTTTGCATAATCTATGGACT 57.192 29.630 0.00 0.00 36.19 3.85
4233 4538 8.662781 TGTTTGCATAATCTATGGACTAGAAC 57.337 34.615 0.00 0.00 39.88 3.01
4310 4684 6.978080 TGTTGCTATTTTTCTGTTTCTTCCAC 59.022 34.615 0.00 0.00 0.00 4.02
4320 4694 3.735591 TGTTTCTTCCACCGGTAGAAAG 58.264 45.455 24.71 19.25 45.13 2.62
4350 4724 3.316308 CACTTGCCACCAATATAAGAGCC 59.684 47.826 0.00 0.00 0.00 4.70
4385 4759 7.867909 TGAACATGATATTCTAGGCTTCTTACG 59.132 37.037 0.00 0.00 0.00 3.18
4388 4762 6.954487 TGATATTCTAGGCTTCTTACGTGA 57.046 37.500 0.00 0.00 0.00 4.35
4403 4777 9.731819 CTTCTTACGTGAAATATGTTAGCTCTA 57.268 33.333 0.00 0.00 0.00 2.43
4443 4817 6.262944 CACATATGCTTTAGGTGGCAGATTTA 59.737 38.462 1.58 0.00 41.88 1.40
4530 4904 1.538950 GTGGAGAAGCTTGCTTCCTTG 59.461 52.381 25.89 0.00 34.08 3.61
4582 4962 5.346181 AACTCAGCTTCCATTCTACCTAC 57.654 43.478 0.00 0.00 0.00 3.18
4586 4968 1.138266 GCTTCCATTCTACCTACGCCA 59.862 52.381 0.00 0.00 0.00 5.69
4597 4979 1.614241 CCTACGCCAGCCTGTTACCT 61.614 60.000 0.00 0.00 0.00 3.08
4598 4980 1.108776 CTACGCCAGCCTGTTACCTA 58.891 55.000 0.00 0.00 0.00 3.08
4614 4996 3.895704 ACCTAATGTTGGTTCCTTGGT 57.104 42.857 0.00 0.00 33.34 3.67
4616 4998 4.552674 ACCTAATGTTGGTTCCTTGGTTT 58.447 39.130 0.00 0.00 33.34 3.27
4930 5312 7.502226 TCAAGATGCGGAGGTATGATTTTAATT 59.498 33.333 0.00 0.00 0.00 1.40
5079 5463 0.464373 AGCATCCAGTAATGGGCACG 60.464 55.000 9.77 0.00 0.00 5.34
5170 5554 5.693961 TGGATTGTATATCTGTTGGCATGT 58.306 37.500 0.00 0.00 0.00 3.21
5289 5673 3.758554 TGAAGTCTTGCCAAGGATTTAGC 59.241 43.478 4.30 0.00 0.00 3.09
5290 5674 3.439857 AGTCTTGCCAAGGATTTAGCA 57.560 42.857 4.30 0.00 33.39 3.49
5397 5781 1.199097 GTTGGTGGCCATAAACTGACG 59.801 52.381 20.59 0.00 31.53 4.35
5419 5803 9.053840 TGACGTTTTATAAACCATGTTGTCTTA 57.946 29.630 0.00 0.00 0.00 2.10
5518 5902 9.259832 AGGTAATTGAATTATTCCTGCTTTCTT 57.740 29.630 6.36 0.00 0.00 2.52
5655 6082 9.582648 AAAACAAATAGTATGGTTACAGAAGGT 57.417 29.630 1.99 0.00 0.00 3.50
5675 6102 4.411540 AGGTGAAGACAGATTATGCATCCT 59.588 41.667 0.19 0.00 31.20 3.24
5687 6114 7.443272 CAGATTATGCATCCTAGACATGAACAA 59.557 37.037 0.19 0.00 31.20 2.83
5777 6204 5.385198 TGCCTGTCAGGATTTCTTTTTAGT 58.615 37.500 23.77 0.00 37.67 2.24
5780 6207 6.672147 CCTGTCAGGATTTCTTTTTAGTGTG 58.328 40.000 14.26 0.00 37.67 3.82
5787 6214 7.857885 CAGGATTTCTTTTTAGTGTGAGTTGAC 59.142 37.037 0.00 0.00 0.00 3.18
5844 6271 1.399440 CGCACATTGATCAACCTGGAG 59.601 52.381 11.07 5.04 0.00 3.86
5915 6342 7.067251 GCAGATTTCTCTTCTGGAAAATCTGAT 59.933 37.037 27.85 2.39 40.77 2.90
5976 6403 6.427853 GGTAAGAACCGTACCAGTTTTTACAT 59.572 38.462 23.75 3.02 42.32 2.29
6051 6479 2.230266 TGCCTTTTTATTTGGAGACGGC 59.770 45.455 0.00 0.00 35.67 5.68
6066 6494 0.106149 ACGGCCTCGAGTTTTTCACT 59.894 50.000 12.31 0.00 39.07 3.41
6070 6498 3.660865 GGCCTCGAGTTTTTCACTTAGA 58.339 45.455 12.31 0.00 35.01 2.10
6150 6578 5.048846 AGAAGGTAAACACATGGTTCAGT 57.951 39.130 0.00 0.00 39.29 3.41
6263 6691 5.175859 CAGGGATACTCGAAGCAAACTTAA 58.824 41.667 0.00 0.00 35.82 1.85
6416 6844 8.814235 GCTCTAATTGTTCATTGAAATCATTGG 58.186 33.333 0.00 2.85 0.00 3.16
6480 6913 3.243704 GCACAGCATTTTCTTGGGTAACA 60.244 43.478 0.00 0.00 39.74 2.41
6524 6957 1.271108 TGGAAATGGTAAGCAGCACGA 60.271 47.619 0.00 0.00 34.37 4.35
6558 6991 4.731773 GCAATGAGATTTCGTCCCAACATC 60.732 45.833 0.00 0.00 0.00 3.06
6570 7003 2.158957 TCCCAACATCGTTATCTCTGGC 60.159 50.000 0.00 0.00 0.00 4.85
6591 7024 0.955178 CGACGCCATACAGAGAGGAT 59.045 55.000 0.00 0.00 0.00 3.24
6653 7086 5.057149 TGTAAGTGTTCTTCTCCTTTCAGC 58.943 41.667 0.00 0.00 35.36 4.26
6671 7104 0.179000 GCATCCATCGACAGAAGGGT 59.821 55.000 0.00 0.00 36.00 4.34
6703 7137 5.687285 GCACACAATTGAACTTCCTTGTTAG 59.313 40.000 13.59 0.00 29.74 2.34
6720 7154 6.931281 CCTTGTTAGAACTTCAGAGTGATCAA 59.069 38.462 0.00 0.00 35.91 2.57
6721 7155 7.117523 CCTTGTTAGAACTTCAGAGTGATCAAG 59.882 40.741 0.00 0.00 35.91 3.02
6722 7156 5.928839 TGTTAGAACTTCAGAGTGATCAAGC 59.071 40.000 0.00 0.00 35.91 4.01
6723 7157 4.888326 AGAACTTCAGAGTGATCAAGCT 57.112 40.909 0.00 0.00 35.91 3.74
6724 7158 4.819769 AGAACTTCAGAGTGATCAAGCTC 58.180 43.478 0.00 0.44 35.91 4.09
6725 7159 3.608316 ACTTCAGAGTGATCAAGCTCC 57.392 47.619 9.18 0.00 33.99 4.70
6726 7160 3.172339 ACTTCAGAGTGATCAAGCTCCT 58.828 45.455 9.18 0.00 33.99 3.69
6727 7161 3.582208 ACTTCAGAGTGATCAAGCTCCTT 59.418 43.478 9.18 0.00 33.99 3.36
6729 7163 4.998671 TCAGAGTGATCAAGCTCCTTAG 57.001 45.455 9.18 0.12 32.47 2.18
6745 7202 7.406104 AGCTCCTTAGTTAACAAAATCCTGAT 58.594 34.615 8.61 0.00 0.00 2.90
6782 7239 5.324409 ACATATCACACCTGTTCACCAAAT 58.676 37.500 0.00 0.00 0.00 2.32
6865 7325 4.202441 GTTGCCAGATGATCAACCTACAT 58.798 43.478 0.00 0.00 35.36 2.29
6892 7352 1.077429 GGGGCAGGTGATCAAGTCC 60.077 63.158 0.00 1.11 0.00 3.85
6907 7367 3.565214 TCCAAGGAACCGCTGGCA 61.565 61.111 9.23 0.00 0.00 4.92
6940 7400 1.038280 ACCGACGAGAAAAGGTGAGT 58.962 50.000 0.00 0.00 35.36 3.41
6978 7442 0.599728 GCCGGCACTTGCATTTTTCA 60.600 50.000 24.80 0.00 44.36 2.69
6981 7445 1.537776 CGGCACTTGCATTTTTCACCA 60.538 47.619 3.15 0.00 44.36 4.17
6985 7449 4.305769 GCACTTGCATTTTTCACCATGTA 58.694 39.130 0.00 0.00 41.59 2.29
7056 7520 2.673368 CCTGTTGAACTATGAAGACGGC 59.327 50.000 0.00 0.00 0.00 5.68
7066 7530 2.048127 AAGACGGCTTGAGCGGAC 60.048 61.111 0.45 10.49 43.02 4.79
7067 7531 2.765250 GAAGACGGCTTGAGCGGACA 62.765 60.000 9.15 0.00 43.02 4.02
7081 7545 0.596577 CGGACAAGAAGAGACCGTCA 59.403 55.000 0.40 0.00 38.97 4.35
7191 7656 0.675633 GGTGCTTGGCAATGAGTTGT 59.324 50.000 0.00 0.00 41.47 3.32
7199 7664 4.098914 TGGCAATGAGTTGTTTAGGACT 57.901 40.909 0.00 0.00 37.65 3.85
7204 7669 5.701290 GCAATGAGTTGTTTAGGACTACACT 59.299 40.000 0.00 0.00 36.60 3.55
7205 7670 6.204882 GCAATGAGTTGTTTAGGACTACACTT 59.795 38.462 0.00 0.00 36.60 3.16
7206 7671 7.571428 GCAATGAGTTGTTTAGGACTACACTTC 60.571 40.741 0.00 0.00 36.60 3.01
7207 7672 6.726490 TGAGTTGTTTAGGACTACACTTCT 57.274 37.500 0.00 0.00 36.60 2.85
7212 7677 6.005583 TGTTTAGGACTACACTTCTACACG 57.994 41.667 0.00 0.00 0.00 4.49
7278 7743 5.347620 TGTATACATACGACCTGCCTTTT 57.652 39.130 0.08 0.00 36.06 2.27
7279 7744 5.113383 TGTATACATACGACCTGCCTTTTG 58.887 41.667 0.08 0.00 36.06 2.44
7282 7747 2.009774 CATACGACCTGCCTTTTGGAG 58.990 52.381 0.00 0.00 44.07 3.86
7347 7812 2.353704 CGGTTCAGATGCCAGAGTTACA 60.354 50.000 0.00 0.00 0.00 2.41
7412 7877 4.861210 TGCCAGTTTTGTATTTGTAACCG 58.139 39.130 0.00 0.00 0.00 4.44
7432 7897 3.153024 GGAACACAGCCGAGCATTA 57.847 52.632 0.00 0.00 0.00 1.90
7434 7899 2.833794 GGAACACAGCCGAGCATTATA 58.166 47.619 0.00 0.00 0.00 0.98
7452 7917 6.691388 GCATTATAAAAACCGAGGAACATGAC 59.309 38.462 0.00 0.00 0.00 3.06
7511 7976 5.662657 TGAACTCATGATGATCCCAGAACTA 59.337 40.000 0.00 0.00 0.00 2.24
7514 7979 6.352516 ACTCATGATGATCCCAGAACTAAAC 58.647 40.000 0.00 0.00 0.00 2.01
7522 7987 6.472887 TGATCCCAGAACTAAACTTGGTAAG 58.527 40.000 0.00 0.00 0.00 2.34
7584 8050 8.684386 TGAATTTGGTATAACAACTGTTCAGA 57.316 30.769 15.74 0.00 39.31 3.27
7611 8077 1.873591 CAAAAAGGGGACACTGAGACG 59.126 52.381 0.00 0.00 0.00 4.18
7624 8090 3.393112 GAGACGTCTCAGTGTGCTC 57.607 57.895 34.97 10.06 42.42 4.26
7781 8249 7.403312 CTCTACCAGAGGTTGATATCCATAG 57.597 44.000 0.00 0.00 38.67 2.23
7782 8250 4.899352 ACCAGAGGTTGATATCCATAGC 57.101 45.455 0.00 0.00 27.29 2.97
7784 8252 4.040952 ACCAGAGGTTGATATCCATAGCAC 59.959 45.833 0.00 0.00 27.29 4.40
7786 8254 3.259374 AGAGGTTGATATCCATAGCACCG 59.741 47.826 0.00 0.00 30.55 4.94
7787 8255 2.972713 AGGTTGATATCCATAGCACCGT 59.027 45.455 0.00 0.00 30.55 4.83
7788 8256 3.391296 AGGTTGATATCCATAGCACCGTT 59.609 43.478 0.00 0.00 30.55 4.44
7789 8257 4.134563 GGTTGATATCCATAGCACCGTTT 58.865 43.478 0.00 0.00 0.00 3.60
7828 8313 1.086696 CATCACGGTGAAGGCGAAAT 58.913 50.000 15.72 0.00 0.00 2.17
7920 8413 9.113838 GTTGAGGACTGACATATATCAACATTT 57.886 33.333 14.16 0.00 42.73 2.32
7921 8414 8.667076 TGAGGACTGACATATATCAACATTTG 57.333 34.615 0.00 0.00 0.00 2.32
7922 8415 7.716560 TGAGGACTGACATATATCAACATTTGG 59.283 37.037 0.00 0.00 0.00 3.28
7923 8416 7.805163 AGGACTGACATATATCAACATTTGGA 58.195 34.615 0.00 0.00 0.00 3.53
7924 8417 8.443176 AGGACTGACATATATCAACATTTGGAT 58.557 33.333 0.00 0.00 0.00 3.41
7925 8418 9.071276 GGACTGACATATATCAACATTTGGATT 57.929 33.333 0.00 0.00 0.00 3.01
7926 8419 9.888878 GACTGACATATATCAACATTTGGATTG 57.111 33.333 0.00 0.00 0.00 2.67
7927 8420 8.853126 ACTGACATATATCAACATTTGGATTGG 58.147 33.333 0.00 0.00 0.00 3.16
7928 8421 8.180706 TGACATATATCAACATTTGGATTGGG 57.819 34.615 0.00 0.00 0.00 4.12
7929 8422 8.003629 TGACATATATCAACATTTGGATTGGGA 58.996 33.333 0.00 0.00 0.00 4.37
7930 8423 8.413309 ACATATATCAACATTTGGATTGGGAG 57.587 34.615 0.00 0.00 0.00 4.30
7931 8424 5.796424 ATATCAACATTTGGATTGGGAGC 57.204 39.130 0.00 0.00 0.00 4.70
7932 8425 3.173953 TCAACATTTGGATTGGGAGCT 57.826 42.857 0.00 0.00 0.00 4.09
7933 8426 3.091545 TCAACATTTGGATTGGGAGCTC 58.908 45.455 4.71 4.71 0.00 4.09
7934 8427 3.094572 CAACATTTGGATTGGGAGCTCT 58.905 45.455 14.64 0.00 0.00 4.09
7935 8428 3.463048 ACATTTGGATTGGGAGCTCTT 57.537 42.857 14.64 0.00 0.00 2.85
7936 8429 3.094572 ACATTTGGATTGGGAGCTCTTG 58.905 45.455 14.64 0.00 0.00 3.02
7937 8430 1.549203 TTTGGATTGGGAGCTCTTGC 58.451 50.000 14.64 2.61 40.05 4.01
7938 8431 0.323725 TTGGATTGGGAGCTCTTGCC 60.324 55.000 14.64 7.14 40.80 4.52
7939 8432 1.821332 GGATTGGGAGCTCTTGCCG 60.821 63.158 14.64 0.00 40.91 5.69
7940 8433 1.221840 GATTGGGAGCTCTTGCCGA 59.778 57.895 14.64 6.79 40.91 5.54
8040 8533 4.240881 ACCATGATGTTAGCACCAGATT 57.759 40.909 0.00 0.00 0.00 2.40
8041 8534 3.949754 ACCATGATGTTAGCACCAGATTG 59.050 43.478 0.00 0.00 0.00 2.67
8042 8535 4.201657 CCATGATGTTAGCACCAGATTGA 58.798 43.478 0.00 0.00 0.00 2.57
8043 8536 4.825634 CCATGATGTTAGCACCAGATTGAT 59.174 41.667 0.00 0.00 0.00 2.57
8095 8589 3.048337 AGTTTGATGCATGGCAAAAGG 57.952 42.857 2.46 0.00 43.62 3.11
8121 8617 3.348647 AAAAGCAAAAACAACAGGCCT 57.651 38.095 0.00 0.00 0.00 5.19
8131 8627 1.539827 ACAACAGGCCTAAATTGCGTC 59.460 47.619 18.83 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.869897 CGCTCATAGCTTCCGAAAATAATTATA 58.130 33.333 0.00 0.00 39.60 0.98
1 2 7.602644 TCGCTCATAGCTTCCGAAAATAATTAT 59.397 33.333 0.00 0.00 39.60 1.28
2 3 6.926826 TCGCTCATAGCTTCCGAAAATAATTA 59.073 34.615 0.00 0.00 39.60 1.40
3 4 5.758296 TCGCTCATAGCTTCCGAAAATAATT 59.242 36.000 0.00 0.00 39.60 1.40
4 5 5.297547 TCGCTCATAGCTTCCGAAAATAAT 58.702 37.500 0.00 0.00 39.60 1.28
5 6 4.689071 TCGCTCATAGCTTCCGAAAATAA 58.311 39.130 0.00 0.00 39.60 1.40
6 7 4.316205 TCGCTCATAGCTTCCGAAAATA 57.684 40.909 0.00 0.00 39.60 1.40
11 12 1.681264 TCAATCGCTCATAGCTTCCGA 59.319 47.619 0.00 0.00 39.60 4.55
14 15 2.464865 ACGTCAATCGCTCATAGCTTC 58.535 47.619 0.00 0.00 44.19 3.86
19 20 3.490249 CCCAAGTACGTCAATCGCTCATA 60.490 47.826 0.00 0.00 44.19 2.15
29 30 3.697747 CCCGGCCCAAGTACGTCA 61.698 66.667 0.00 0.00 0.00 4.35
48 49 4.161295 CGCGCTTCCAGGGGATCA 62.161 66.667 5.56 0.00 0.00 2.92
65 66 2.032799 TGACTTTGTGATTTGACGGCAC 59.967 45.455 0.00 0.00 0.00 5.01
81 82 3.558931 TTCACACTGTGGTGATGACTT 57.441 42.857 13.09 0.00 46.37 3.01
89 90 3.632145 GGACTTTTCATTCACACTGTGGT 59.368 43.478 13.09 0.00 33.87 4.16
122 123 2.027285 AGCTTTTGTTGGTTTGGTTGCT 60.027 40.909 0.00 0.00 0.00 3.91
123 124 2.355197 AGCTTTTGTTGGTTTGGTTGC 58.645 42.857 0.00 0.00 0.00 4.17
125 126 4.810191 TGTAGCTTTTGTTGGTTTGGTT 57.190 36.364 0.00 0.00 0.00 3.67
129 130 5.105554 TGTGTCATGTAGCTTTTGTTGGTTT 60.106 36.000 0.00 0.00 0.00 3.27
146 147 8.267183 TCTGATGAGGTTATGTTAATGTGTCAT 58.733 33.333 0.00 0.00 0.00 3.06
150 151 8.771766 CAGATCTGATGAGGTTATGTTAATGTG 58.228 37.037 18.34 0.00 0.00 3.21
163 164 4.564041 CCGGTTATTCAGATCTGATGAGG 58.436 47.826 25.64 17.72 39.64 3.86
188 189 2.753452 CGGCCTAATCTATAGCCTTCGA 59.247 50.000 0.00 0.00 43.48 3.71
200 201 2.622064 ATGTTGTCTCCGGCCTAATC 57.378 50.000 0.00 0.00 0.00 1.75
224 225 1.272490 TCTGTCTCGTGTGGGACATTC 59.728 52.381 0.00 0.00 44.52 2.67
230 231 1.800586 CATTTGTCTGTCTCGTGTGGG 59.199 52.381 0.00 0.00 0.00 4.61
232 233 2.221749 CACCATTTGTCTGTCTCGTGTG 59.778 50.000 0.00 0.00 0.00 3.82
233 234 2.483876 CACCATTTGTCTGTCTCGTGT 58.516 47.619 0.00 0.00 0.00 4.49
315 316 0.453950 CTTGAGCGCATTGTGAGTGC 60.454 55.000 11.47 0.00 42.55 4.40
316 317 0.870393 ACTTGAGCGCATTGTGAGTG 59.130 50.000 11.47 0.00 0.00 3.51
317 318 0.870393 CACTTGAGCGCATTGTGAGT 59.130 50.000 11.47 1.34 33.50 3.41
345 353 0.597637 GATGATGTGGTAGGCGTCCG 60.598 60.000 0.00 0.00 0.00 4.79
394 402 1.667724 CAATGGCGTCACATTCTCTCC 59.332 52.381 0.00 0.00 38.94 3.71
418 426 1.373497 CACGAAGCTTCTGCGGACT 60.373 57.895 23.50 0.00 45.42 3.85
422 430 2.383527 GGGACACGAAGCTTCTGCG 61.384 63.158 23.50 14.11 45.42 5.18
454 463 3.424105 ATTGGCTGCCCTCCCTCC 61.424 66.667 17.53 0.00 0.00 4.30
455 464 2.123982 CATTGGCTGCCCTCCCTC 60.124 66.667 17.53 0.00 0.00 4.30
456 465 3.747579 CCATTGGCTGCCCTCCCT 61.748 66.667 17.53 0.00 0.00 4.20
479 488 1.273666 ACGGATTGACCCCTCCTAGTT 60.274 52.381 0.00 0.00 34.64 2.24
656 681 2.549754 CGCACTGGGCCAATTAGATTAG 59.450 50.000 8.04 0.00 40.31 1.73
691 728 1.435515 CGAGAGTGGAGCTAGTGGC 59.564 63.158 0.00 0.00 42.19 5.01
692 729 1.435515 GCGAGAGTGGAGCTAGTGG 59.564 63.158 0.00 0.00 0.00 4.00
693 730 1.435515 GGCGAGAGTGGAGCTAGTG 59.564 63.158 0.00 0.00 0.00 2.74
694 731 2.115911 CGGCGAGAGTGGAGCTAGT 61.116 63.158 0.00 0.00 0.00 2.57
695 732 2.718731 CGGCGAGAGTGGAGCTAG 59.281 66.667 0.00 0.00 0.00 3.42
712 749 1.528129 GGGATCCTGATTGATTCGGC 58.472 55.000 12.58 0.00 0.00 5.54
1250 1288 6.140303 ACATGTTGCAGAAATGGATGTATC 57.860 37.500 0.00 0.00 0.00 2.24
1251 1289 7.643569 TTACATGTTGCAGAAATGGATGTAT 57.356 32.000 2.30 0.00 0.00 2.29
1252 1290 7.643569 ATTACATGTTGCAGAAATGGATGTA 57.356 32.000 2.30 0.00 0.00 2.29
1253 1291 5.981088 TTACATGTTGCAGAAATGGATGT 57.019 34.783 2.30 0.00 0.00 3.06
1254 1292 7.036829 TGAATTACATGTTGCAGAAATGGATG 58.963 34.615 2.30 0.00 0.00 3.51
1255 1293 7.172868 TGAATTACATGTTGCAGAAATGGAT 57.827 32.000 2.30 2.30 0.00 3.41
1256 1294 6.350361 CCTGAATTACATGTTGCAGAAATGGA 60.350 38.462 2.30 0.00 0.00 3.41
1257 1295 5.808540 CCTGAATTACATGTTGCAGAAATGG 59.191 40.000 2.30 0.00 0.00 3.16
1258 1296 6.529125 GTCCTGAATTACATGTTGCAGAAATG 59.471 38.462 2.30 4.36 0.00 2.32
1259 1297 6.623549 CGTCCTGAATTACATGTTGCAGAAAT 60.624 38.462 2.30 0.00 0.00 2.17
1260 1298 5.334802 CGTCCTGAATTACATGTTGCAGAAA 60.335 40.000 2.30 0.00 0.00 2.52
1261 1299 4.154015 CGTCCTGAATTACATGTTGCAGAA 59.846 41.667 2.30 0.00 0.00 3.02
1262 1300 3.684305 CGTCCTGAATTACATGTTGCAGA 59.316 43.478 2.30 0.00 0.00 4.26
1263 1301 3.181507 CCGTCCTGAATTACATGTTGCAG 60.182 47.826 2.30 0.32 0.00 4.41
1264 1302 2.746904 CCGTCCTGAATTACATGTTGCA 59.253 45.455 2.30 0.00 0.00 4.08
1265 1303 3.006940 TCCGTCCTGAATTACATGTTGC 58.993 45.455 2.30 0.00 0.00 4.17
1266 1304 3.623060 CCTCCGTCCTGAATTACATGTTG 59.377 47.826 2.30 0.00 0.00 3.33
1267 1305 3.370527 CCCTCCGTCCTGAATTACATGTT 60.371 47.826 2.30 0.00 0.00 2.71
1268 1306 2.170607 CCCTCCGTCCTGAATTACATGT 59.829 50.000 2.69 2.69 0.00 3.21
1269 1307 2.434336 TCCCTCCGTCCTGAATTACATG 59.566 50.000 0.00 0.00 0.00 3.21
1270 1308 2.700897 CTCCCTCCGTCCTGAATTACAT 59.299 50.000 0.00 0.00 0.00 2.29
1271 1309 2.108168 CTCCCTCCGTCCTGAATTACA 58.892 52.381 0.00 0.00 0.00 2.41
1272 1310 2.108970 ACTCCCTCCGTCCTGAATTAC 58.891 52.381 0.00 0.00 0.00 1.89
1273 1311 2.544844 ACTCCCTCCGTCCTGAATTA 57.455 50.000 0.00 0.00 0.00 1.40
1274 1312 2.544844 TACTCCCTCCGTCCTGAATT 57.455 50.000 0.00 0.00 0.00 2.17
1275 1313 2.091278 TCATACTCCCTCCGTCCTGAAT 60.091 50.000 0.00 0.00 0.00 2.57
1276 1314 1.286849 TCATACTCCCTCCGTCCTGAA 59.713 52.381 0.00 0.00 0.00 3.02
1277 1315 0.924090 TCATACTCCCTCCGTCCTGA 59.076 55.000 0.00 0.00 0.00 3.86
1278 1316 2.002505 ATCATACTCCCTCCGTCCTG 57.997 55.000 0.00 0.00 0.00 3.86
1279 1317 2.178106 AGAATCATACTCCCTCCGTCCT 59.822 50.000 0.00 0.00 0.00 3.85
1280 1318 2.599677 AGAATCATACTCCCTCCGTCC 58.400 52.381 0.00 0.00 0.00 4.79
1349 1387 2.637382 TGCTATGAACTTCCTCCACACA 59.363 45.455 0.00 0.00 0.00 3.72
1350 1388 3.334583 TGCTATGAACTTCCTCCACAC 57.665 47.619 0.00 0.00 0.00 3.82
1351 1389 4.574674 AATGCTATGAACTTCCTCCACA 57.425 40.909 0.00 0.00 0.00 4.17
1352 1390 7.573968 ATTAAATGCTATGAACTTCCTCCAC 57.426 36.000 0.00 0.00 0.00 4.02
1353 1391 7.615365 ACAATTAAATGCTATGAACTTCCTCCA 59.385 33.333 0.00 0.00 0.00 3.86
1354 1392 7.917505 CACAATTAAATGCTATGAACTTCCTCC 59.082 37.037 0.00 0.00 0.00 4.30
1356 1394 8.246180 CACACAATTAAATGCTATGAACTTCCT 58.754 33.333 0.00 0.00 0.00 3.36
1359 1397 9.762933 AAACACACAATTAAATGCTATGAACTT 57.237 25.926 0.00 0.00 0.00 2.66
1360 1398 9.762933 AAAACACACAATTAAATGCTATGAACT 57.237 25.926 0.00 0.00 0.00 3.01
1362 1400 8.494347 GCAAAACACACAATTAAATGCTATGAA 58.506 29.630 0.00 0.00 0.00 2.57
1392 1659 2.971598 CGTCCCTGCTCCCCACAAT 61.972 63.158 0.00 0.00 0.00 2.71
1482 1749 4.023291 GAGGGTTGCCATAGAAATTGGAA 58.977 43.478 0.00 0.00 36.26 3.53
1489 1756 2.367567 GGATACGAGGGTTGCCATAGAA 59.632 50.000 0.00 0.00 0.00 2.10
1546 1813 3.545822 CGCAACGCATACATCAATAGCAA 60.546 43.478 0.00 0.00 0.00 3.91
1549 1816 3.490896 ACTCGCAACGCATACATCAATAG 59.509 43.478 0.00 0.00 0.00 1.73
1553 1820 1.658596 GAACTCGCAACGCATACATCA 59.341 47.619 0.00 0.00 0.00 3.07
1562 1829 1.391485 CATCCTCAAGAACTCGCAACG 59.609 52.381 0.00 0.00 0.00 4.10
1577 1844 2.224159 ACGTCAAGGGCCACATCCT 61.224 57.895 6.18 0.00 35.88 3.24
1586 1853 4.092968 GCTATCTAACAAACACGTCAAGGG 59.907 45.833 0.00 0.00 0.00 3.95
1636 1903 2.912986 CGCAGCAGTAACTTGGTCA 58.087 52.632 0.00 0.00 0.00 4.02
1685 1955 6.367695 CGTTGATTATGTAAACAGGACTGACA 59.632 38.462 6.29 0.63 0.00 3.58
1697 1967 9.862371 AAATGTTTATTGCCGTTGATTATGTAA 57.138 25.926 0.00 0.00 0.00 2.41
1708 1978 5.708230 TGGTCTTAGAAATGTTTATTGCCGT 59.292 36.000 0.00 0.00 0.00 5.68
1709 1979 6.189677 TGGTCTTAGAAATGTTTATTGCCG 57.810 37.500 0.00 0.00 0.00 5.69
1724 1994 2.627945 TGCTATGGCGTTTGGTCTTAG 58.372 47.619 0.00 0.00 42.25 2.18
1732 2002 3.127548 CAGAAACTGATGCTATGGCGTTT 59.872 43.478 0.00 0.76 37.88 3.60
1736 2006 3.012518 ACACAGAAACTGATGCTATGGC 58.987 45.455 5.76 0.00 35.18 4.40
1790 2071 9.506018 CATTAGGACATGAATGGAATATGTACA 57.494 33.333 0.00 0.00 37.97 2.90
1791 2072 9.507329 ACATTAGGACATGAATGGAATATGTAC 57.493 33.333 0.00 0.00 37.37 2.90
1794 2075 8.671921 GCTACATTAGGACATGAATGGAATATG 58.328 37.037 0.00 0.00 37.37 1.78
1824 2105 5.833082 TCTTGTAAGTTGAGACAGACACTC 58.167 41.667 0.00 0.00 35.26 3.51
1844 2125 9.120538 TGTAGTTTGAGCATTTCTAAACTTCTT 57.879 29.630 0.00 0.00 41.84 2.52
1845 2126 8.677148 TGTAGTTTGAGCATTTCTAAACTTCT 57.323 30.769 0.00 0.00 41.84 2.85
1882 2163 7.600752 GGTGCATACTTTATCAATACTCTCCTC 59.399 40.741 0.00 0.00 0.00 3.71
1933 2214 4.641989 AGATGTTGGCAAATCACAGTATCC 59.358 41.667 18.17 0.00 0.00 2.59
1950 2231 4.529897 TGCATGGAATAGAGCAAGATGTT 58.470 39.130 0.00 0.00 33.48 2.71
2047 2332 4.763073 TGTAGTCTCTTGGAGATGCATTG 58.237 43.478 0.00 0.00 40.98 2.82
2134 2419 6.988522 TGTGTACATGTAACAGCTTTCTCTA 58.011 36.000 7.25 0.00 0.00 2.43
2220 2505 5.334414 GCAGACAAGTAAAGTTGTGATCTGG 60.334 44.000 7.88 0.00 40.83 3.86
2238 2523 4.162131 TGATATGCTTCAACTAGGCAGACA 59.838 41.667 0.00 0.00 39.38 3.41
2244 2529 5.295950 CAGAGGTGATATGCTTCAACTAGG 58.704 45.833 2.99 0.00 43.66 3.02
2247 2532 3.539604 GCAGAGGTGATATGCTTCAACT 58.460 45.455 2.66 2.66 46.26 3.16
2260 2545 2.168106 AGCTTCTATGTCAGCAGAGGTG 59.832 50.000 0.00 0.00 38.61 4.00
2304 2589 9.709495 AAAAACTATTGAGCATGCTGAATTTAA 57.291 25.926 32.52 17.08 32.47 1.52
2306 2591 7.874016 TGAAAAACTATTGAGCATGCTGAATTT 59.126 29.630 32.52 22.33 32.47 1.82
2340 2625 6.645003 GTGCGAACCATTTTTCTTCCTAAATT 59.355 34.615 0.00 0.00 0.00 1.82
2341 2626 6.015434 AGTGCGAACCATTTTTCTTCCTAAAT 60.015 34.615 0.00 0.00 0.00 1.40
2344 2629 4.394729 AGTGCGAACCATTTTTCTTCCTA 58.605 39.130 0.00 0.00 0.00 2.94
2345 2630 3.222603 AGTGCGAACCATTTTTCTTCCT 58.777 40.909 0.00 0.00 0.00 3.36
2347 2632 4.489679 AGAGTGCGAACCATTTTTCTTC 57.510 40.909 0.00 0.00 0.00 2.87
2350 2635 4.201920 GGGATAGAGTGCGAACCATTTTTC 60.202 45.833 0.00 0.00 0.00 2.29
2355 2640 0.759346 GGGGATAGAGTGCGAACCAT 59.241 55.000 0.00 0.00 0.00 3.55
2356 2641 0.616395 TGGGGATAGAGTGCGAACCA 60.616 55.000 0.00 0.00 0.00 3.67
2357 2642 0.539986 TTGGGGATAGAGTGCGAACC 59.460 55.000 0.00 0.00 0.00 3.62
2358 2643 2.280628 CTTTGGGGATAGAGTGCGAAC 58.719 52.381 0.00 0.00 0.00 3.95
2359 2644 1.906574 ACTTTGGGGATAGAGTGCGAA 59.093 47.619 0.00 0.00 0.00 4.70
2360 2645 1.568504 ACTTTGGGGATAGAGTGCGA 58.431 50.000 0.00 0.00 0.00 5.10
2362 2647 3.055094 TCTCAACTTTGGGGATAGAGTGC 60.055 47.826 0.00 0.00 0.00 4.40
2363 2648 4.826274 TCTCAACTTTGGGGATAGAGTG 57.174 45.455 0.00 0.00 0.00 3.51
2364 2649 4.846940 ACTTCTCAACTTTGGGGATAGAGT 59.153 41.667 0.00 0.00 0.00 3.24
2365 2650 5.428184 ACTTCTCAACTTTGGGGATAGAG 57.572 43.478 0.00 0.00 0.00 2.43
2366 2651 5.309543 TGAACTTCTCAACTTTGGGGATAGA 59.690 40.000 0.00 0.00 0.00 1.98
2367 2652 5.412904 GTGAACTTCTCAACTTTGGGGATAG 59.587 44.000 0.00 0.00 35.22 2.08
2368 2653 5.313712 GTGAACTTCTCAACTTTGGGGATA 58.686 41.667 0.00 0.00 35.22 2.59
2369 2654 4.145052 GTGAACTTCTCAACTTTGGGGAT 58.855 43.478 0.00 0.00 35.22 3.85
2370 2655 3.551846 GTGAACTTCTCAACTTTGGGGA 58.448 45.455 0.00 0.00 35.22 4.81
2371 2656 2.290641 CGTGAACTTCTCAACTTTGGGG 59.709 50.000 0.00 0.00 35.22 4.96
2372 2657 2.943033 ACGTGAACTTCTCAACTTTGGG 59.057 45.455 0.00 0.00 35.22 4.12
2373 2658 4.094294 TCAACGTGAACTTCTCAACTTTGG 59.906 41.667 0.00 0.00 35.22 3.28
2374 2659 5.216566 TCAACGTGAACTTCTCAACTTTG 57.783 39.130 0.00 0.00 35.22 2.77
2391 2676 1.019673 CAAGATCCCCTGCATCAACG 58.980 55.000 0.00 0.00 0.00 4.10
2404 2689 5.411781 AGGACACACGAATTCTACAAGATC 58.588 41.667 3.52 0.00 0.00 2.75
2449 2734 0.670162 GCAGTTGCTCCTTTGCTCAA 59.330 50.000 0.00 0.00 38.21 3.02
2475 2760 7.570607 AGACCCTTATCCTCTTCAATATCAACT 59.429 37.037 0.00 0.00 0.00 3.16
2531 2816 6.641314 TGAGTGTCTCGAGATCTTAAACAAAC 59.359 38.462 19.90 8.28 32.35 2.93
2614 2899 4.263435 TGACAAACTTTACCTGAAACCGT 58.737 39.130 0.00 0.00 0.00 4.83
2638 2924 6.974932 ATGTGATTAACGATAGATGCCATC 57.025 37.500 0.00 0.00 41.38 3.51
2648 2934 8.580720 AGATCTTGCTAGTATGTGATTAACGAT 58.419 33.333 0.00 0.00 0.00 3.73
2655 2941 9.703892 GAACATAAGATCTTGCTAGTATGTGAT 57.296 33.333 18.47 4.73 33.60 3.06
2682 2968 5.190925 AGCCCATTGACCAACTAGTATAACA 59.809 40.000 0.00 0.00 0.00 2.41
2689 2975 3.742640 GCTCTAGCCCATTGACCAACTAG 60.743 52.174 0.00 0.00 34.31 2.57
2696 2982 7.751768 AAAATATAAGCTCTAGCCCATTGAC 57.248 36.000 0.00 0.00 43.38 3.18
2767 3056 6.605471 TTGTGGAAGCTTCATAGTTCTCTA 57.395 37.500 27.02 4.83 0.00 2.43
2820 3109 7.739498 AACACGTGTATTAGAAAACATTCCT 57.261 32.000 23.69 0.00 0.00 3.36
2887 3176 9.627123 AGTTATTTATGTACATTGCATGGTAGT 57.373 29.630 14.77 0.00 33.60 2.73
2889 3178 9.620259 TGAGTTATTTATGTACATTGCATGGTA 57.380 29.630 14.77 0.00 33.60 3.25
2890 3179 8.518430 TGAGTTATTTATGTACATTGCATGGT 57.482 30.769 14.77 0.00 33.60 3.55
2891 3180 9.800433 TTTGAGTTATTTATGTACATTGCATGG 57.200 29.630 14.77 0.00 33.60 3.66
2983 3283 7.225931 TCCGTTTTTGCTATATGTAACTCATCC 59.774 37.037 0.00 0.00 37.91 3.51
2984 3284 8.138365 TCCGTTTTTGCTATATGTAACTCATC 57.862 34.615 0.00 0.00 37.91 2.92
3033 3333 6.344500 ACACCAGCACAAATGTTTAATGAAA 58.656 32.000 0.00 0.00 0.00 2.69
3036 3336 6.446318 ACTACACCAGCACAAATGTTTAATG 58.554 36.000 0.00 0.00 0.00 1.90
3038 3338 6.458232 AACTACACCAGCACAAATGTTTAA 57.542 33.333 0.00 0.00 0.00 1.52
3040 3340 6.648879 ATAACTACACCAGCACAAATGTTT 57.351 33.333 0.00 0.00 0.00 2.83
3046 3346 9.509956 AATAAGTTAATAACTACACCAGCACAA 57.490 29.630 6.04 0.00 41.91 3.33
3306 3609 8.152898 GGTACTTTAAGTTCCACTAAAAGAGGA 58.847 37.037 14.55 0.00 35.92 3.71
3539 3843 6.751157 TGGATAGCCAAATATCTGCAATTTG 58.249 36.000 13.21 13.21 42.49 2.32
3703 4008 9.435688 GGAAGATTGCCAACAATTAAATAAAGT 57.564 29.630 0.00 0.00 46.59 2.66
3720 4025 3.065925 GCTGACACTATTGGGAAGATTGC 59.934 47.826 0.00 0.00 0.00 3.56
3726 4031 5.880332 GTCATAAAGCTGACACTATTGGGAA 59.120 40.000 0.00 0.00 44.03 3.97
3793 4098 4.692625 CCTCCACTGAAGTATGTCTTGTTG 59.307 45.833 0.00 0.00 36.40 3.33
3957 4262 4.336889 TCCTCAAGAACTTGTTCGATGT 57.663 40.909 13.15 1.45 41.16 3.06
4074 4379 7.072454 AGGCAGAATATTAGGACCAAACTATCA 59.928 37.037 0.00 0.00 0.00 2.15
4160 4465 6.660521 TGTCCAGCATTTTCTTTCTCACATAT 59.339 34.615 0.00 0.00 0.00 1.78
4310 4684 0.320374 TGTCAGCCACTTTCTACCGG 59.680 55.000 0.00 0.00 0.00 5.28
4403 4777 9.826574 AAAGCATATGTGATAGCAAAAATGAAT 57.173 25.926 4.29 0.00 0.00 2.57
4443 4817 2.301870 TGTGATTGTAGGGCTCGTCTTT 59.698 45.455 0.00 0.00 0.00 2.52
4530 4904 2.350522 ACACGCAGATGAATTCCTGAC 58.649 47.619 13.91 6.17 32.37 3.51
4582 4962 1.299541 CATTAGGTAACAGGCTGGCG 58.700 55.000 20.34 0.00 41.41 5.69
4586 4968 4.332828 GAACCAACATTAGGTAACAGGCT 58.667 43.478 0.00 0.00 38.76 4.58
4597 4979 8.151596 GGAAAATAAACCAAGGAACCAACATTA 58.848 33.333 0.00 0.00 0.00 1.90
4598 4980 6.995686 GGAAAATAAACCAAGGAACCAACATT 59.004 34.615 0.00 0.00 0.00 2.71
4614 4996 6.009589 TGCAAGACAGATGAGGGAAAATAAA 58.990 36.000 0.00 0.00 0.00 1.40
4616 4998 5.178096 TGCAAGACAGATGAGGGAAAATA 57.822 39.130 0.00 0.00 0.00 1.40
5146 5530 5.766670 ACATGCCAACAGATATACAATCCAG 59.233 40.000 0.00 0.00 0.00 3.86
5289 5673 2.749044 AGCGGCCAACTCTGCATG 60.749 61.111 2.24 0.00 40.71 4.06
5290 5674 2.749044 CAGCGGCCAACTCTGCAT 60.749 61.111 2.24 0.00 40.71 3.96
5425 5809 8.997323 CCATTCTCTGTCATATTTTAAGCCTAG 58.003 37.037 0.00 0.00 0.00 3.02
5498 5882 7.725251 ACACAAAGAAAGCAGGAATAATTCAA 58.275 30.769 0.00 0.00 0.00 2.69
5518 5902 6.207810 GGTGTTATCCATAAGGTTGAACACAA 59.792 38.462 21.53 0.00 44.81 3.33
5655 6082 6.324770 TGTCTAGGATGCATAATCTGTCTTCA 59.675 38.462 0.00 0.00 35.43 3.02
5675 6102 6.691754 TCAAGTTTGCTTTGTTCATGTCTA 57.308 33.333 0.00 0.00 31.49 2.59
5687 6114 5.859205 AGTTCTTCCATTCAAGTTTGCTT 57.141 34.783 0.00 0.00 34.82 3.91
5777 6204 6.768483 TGAAGAATATGGAAGTCAACTCACA 58.232 36.000 0.00 0.00 0.00 3.58
5780 6207 6.410540 ACCTGAAGAATATGGAAGTCAACTC 58.589 40.000 0.00 0.00 0.00 3.01
5787 6214 6.098982 ACTCTGGTACCTGAAGAATATGGAAG 59.901 42.308 20.59 8.39 0.00 3.46
5907 6334 7.828223 ACTTCTGCAGTTAGATGAATCAGATTT 59.172 33.333 14.67 0.00 27.32 2.17
5915 6342 7.038048 CACATCTACTTCTGCAGTTAGATGAA 58.962 38.462 36.72 19.22 41.03 2.57
5976 6403 9.087871 TGAATGGAAAGGAAGTTGATCAAATAA 57.912 29.630 10.35 0.00 0.00 1.40
6051 6479 6.868864 TCTGAATCTAAGTGAAAAACTCGAGG 59.131 38.462 18.41 0.00 38.56 4.63
6150 6578 2.016318 CAATGGCGTCCAATAGCTTCA 58.984 47.619 0.00 0.00 36.95 3.02
6416 6844 7.483307 TGAGGCAGTCAAAATTGCTAATTATC 58.517 34.615 0.00 0.00 38.16 1.75
6421 6849 4.397420 TCTGAGGCAGTCAAAATTGCTAA 58.603 39.130 0.00 0.00 38.16 3.09
6480 6913 5.149973 TGCCTGCAAAATGTTTACATCAT 57.850 34.783 0.00 0.00 35.10 2.45
6524 6957 6.127814 ACGAAATCTCATTGCATCAACAAGAT 60.128 34.615 0.00 0.00 37.48 2.40
6558 6991 0.930742 GCGTCGAGCCAGAGATAACG 60.931 60.000 0.00 0.00 40.81 3.18
6570 7003 0.309302 CCTCTCTGTATGGCGTCGAG 59.691 60.000 0.00 0.00 0.00 4.04
6591 7024 4.326826 CAATGTGAAGCCTCTTCCAGTTA 58.673 43.478 4.35 0.00 0.00 2.24
6643 7076 2.208431 GTCGATGGATGCTGAAAGGAG 58.792 52.381 0.00 0.00 38.10 3.69
6653 7086 2.698855 AACCCTTCTGTCGATGGATG 57.301 50.000 0.00 0.00 36.77 3.51
6703 7137 3.932089 GGAGCTTGATCACTCTGAAGTTC 59.068 47.826 11.82 5.89 31.71 3.01
6720 7154 6.779860 TCAGGATTTTGTTAACTAAGGAGCT 58.220 36.000 7.22 0.00 0.00 4.09
6721 7155 7.475840 CATCAGGATTTTGTTAACTAAGGAGC 58.524 38.462 7.22 0.00 0.00 4.70
6722 7156 7.337942 AGCATCAGGATTTTGTTAACTAAGGAG 59.662 37.037 7.22 0.00 0.00 3.69
6723 7157 7.175104 AGCATCAGGATTTTGTTAACTAAGGA 58.825 34.615 7.22 1.07 0.00 3.36
6724 7158 7.396540 AGCATCAGGATTTTGTTAACTAAGG 57.603 36.000 7.22 0.00 0.00 2.69
6725 7159 8.125448 GCTAGCATCAGGATTTTGTTAACTAAG 58.875 37.037 10.63 0.00 0.00 2.18
6726 7160 7.829211 AGCTAGCATCAGGATTTTGTTAACTAA 59.171 33.333 18.83 2.46 0.00 2.24
6727 7161 7.338710 AGCTAGCATCAGGATTTTGTTAACTA 58.661 34.615 18.83 0.00 0.00 2.24
6729 7163 6.442513 AGCTAGCATCAGGATTTTGTTAAC 57.557 37.500 18.83 0.00 0.00 2.01
6745 7202 7.233553 AGGTGTGATATGTCTAAATAGCTAGCA 59.766 37.037 18.83 3.19 0.00 3.49
6782 7239 2.936919 ACAGGAGTGATTCAGCAACA 57.063 45.000 0.00 0.00 0.00 3.33
6892 7352 2.644992 GTTGCCAGCGGTTCCTTG 59.355 61.111 0.00 0.00 0.00 3.61
6907 7367 3.771160 CGGTAGGAGGCCAGCGTT 61.771 66.667 5.01 0.00 0.00 4.84
6911 7371 2.439701 TCGTCGGTAGGAGGCCAG 60.440 66.667 5.01 0.00 0.00 4.85
7056 7520 2.333014 GTCTCTTCTTGTCCGCTCAAG 58.667 52.381 10.25 10.25 44.08 3.02
7066 7530 2.554462 TCTCTGTGACGGTCTCTTCTTG 59.446 50.000 9.88 0.00 0.00 3.02
7067 7531 2.817258 CTCTCTGTGACGGTCTCTTCTT 59.183 50.000 9.88 0.00 0.00 2.52
7081 7545 1.949799 ACTTGGAGCCATCTCTCTGT 58.050 50.000 0.00 0.00 39.31 3.41
7191 7656 4.520111 TGCGTGTAGAAGTGTAGTCCTAAA 59.480 41.667 0.00 0.00 0.00 1.85
7267 7732 0.693049 TCCTCTCCAAAAGGCAGGTC 59.307 55.000 0.00 0.00 33.65 3.85
7268 7733 1.149101 TTCCTCTCCAAAAGGCAGGT 58.851 50.000 0.00 0.00 33.65 4.00
7278 7743 5.949354 TGTTTCAACTTCTTTTTCCTCTCCA 59.051 36.000 0.00 0.00 0.00 3.86
7279 7744 6.451064 TGTTTCAACTTCTTTTTCCTCTCC 57.549 37.500 0.00 0.00 0.00 3.71
7282 7747 7.257722 TCACATGTTTCAACTTCTTTTTCCTC 58.742 34.615 0.00 0.00 0.00 3.71
7368 7833 5.688621 GCATGCTGTTATACAAATGTCATGG 59.311 40.000 11.37 0.00 32.02 3.66
7432 7897 4.571919 TCGTCATGTTCCTCGGTTTTTAT 58.428 39.130 0.00 0.00 0.00 1.40
7434 7899 2.841215 TCGTCATGTTCCTCGGTTTTT 58.159 42.857 0.00 0.00 0.00 1.94
7486 7951 5.132312 AGTTCTGGGATCATCATGAGTTCAT 59.868 40.000 0.09 0.00 36.96 2.57
7487 7952 4.472470 AGTTCTGGGATCATCATGAGTTCA 59.528 41.667 0.09 0.00 0.00 3.18
7488 7953 5.033589 AGTTCTGGGATCATCATGAGTTC 57.966 43.478 0.09 0.00 0.00 3.01
7489 7954 6.566079 TTAGTTCTGGGATCATCATGAGTT 57.434 37.500 0.09 0.00 0.00 3.01
7490 7955 6.157645 AGTTTAGTTCTGGGATCATCATGAGT 59.842 38.462 0.09 0.00 0.00 3.41
7491 7956 6.590068 AGTTTAGTTCTGGGATCATCATGAG 58.410 40.000 0.09 0.00 0.00 2.90
7492 7957 6.566079 AGTTTAGTTCTGGGATCATCATGA 57.434 37.500 0.00 0.00 0.00 3.07
7493 7958 6.039047 CCAAGTTTAGTTCTGGGATCATCATG 59.961 42.308 0.00 0.00 0.00 3.07
7494 7959 6.125029 CCAAGTTTAGTTCTGGGATCATCAT 58.875 40.000 0.00 0.00 0.00 2.45
7495 7960 5.014123 ACCAAGTTTAGTTCTGGGATCATCA 59.986 40.000 0.00 0.00 30.94 3.07
7496 7961 5.501156 ACCAAGTTTAGTTCTGGGATCATC 58.499 41.667 0.00 0.00 30.94 2.92
7497 7962 5.520748 ACCAAGTTTAGTTCTGGGATCAT 57.479 39.130 0.00 0.00 30.94 2.45
7498 7963 4.993705 ACCAAGTTTAGTTCTGGGATCA 57.006 40.909 0.00 0.00 30.94 2.92
7499 7964 6.708285 TCTTACCAAGTTTAGTTCTGGGATC 58.292 40.000 0.00 0.00 30.94 3.36
7500 7965 6.697641 TCTTACCAAGTTTAGTTCTGGGAT 57.302 37.500 0.00 0.00 30.94 3.85
7501 7966 6.100714 AGTTCTTACCAAGTTTAGTTCTGGGA 59.899 38.462 0.00 0.00 30.94 4.37
7502 7967 6.296803 AGTTCTTACCAAGTTTAGTTCTGGG 58.703 40.000 0.00 0.00 32.57 4.45
7511 7976 7.120923 TGTCTCAGTAGTTCTTACCAAGTTT 57.879 36.000 0.00 0.00 32.37 2.66
7514 7979 6.925211 TCATGTCTCAGTAGTTCTTACCAAG 58.075 40.000 0.00 0.00 32.37 3.61
7522 7987 6.884096 CATGAGTTCATGTCTCAGTAGTTC 57.116 41.667 20.77 0.28 46.40 3.01
7558 8023 9.295825 TCTGAACAGTTGTTATACCAAATTCAT 57.704 29.630 0.00 0.00 38.56 2.57
7563 8028 7.867305 TGTTCTGAACAGTTGTTATACCAAA 57.133 32.000 18.69 0.00 38.56 3.28
7584 8050 1.484653 GTGTCCCCTTTTTGCCTTGTT 59.515 47.619 0.00 0.00 0.00 2.83
7611 8077 0.241213 TACAGCGAGCACACTGAGAC 59.759 55.000 6.16 0.00 37.35 3.36
7624 8090 1.983605 CTGACGTTACACCTTACAGCG 59.016 52.381 0.00 0.00 0.00 5.18
7664 8130 2.478134 CTGTTGTAGCTTGTGACTGCTC 59.522 50.000 6.90 1.87 40.35 4.26
7774 8242 5.865085 ACATATACAAACGGTGCTATGGAT 58.135 37.500 12.27 0.00 33.83 3.41
7775 8243 5.284861 ACATATACAAACGGTGCTATGGA 57.715 39.130 12.27 0.00 33.83 3.41
7776 8244 6.649141 ACATACATATACAAACGGTGCTATGG 59.351 38.462 12.27 0.00 33.83 2.74
7777 8245 7.652300 ACATACATATACAAACGGTGCTATG 57.348 36.000 0.00 0.00 34.83 2.23
7778 8246 9.199982 GTTACATACATATACAAACGGTGCTAT 57.800 33.333 0.00 0.00 0.00 2.97
7780 8248 7.042950 TGTTACATACATATACAAACGGTGCT 58.957 34.615 0.00 0.00 0.00 4.40
7781 8249 7.236674 TGTTACATACATATACAAACGGTGC 57.763 36.000 0.00 0.00 0.00 5.01
7782 8250 9.644993 CAATGTTACATACATATACAAACGGTG 57.355 33.333 0.00 0.00 46.75 4.94
7784 8252 8.338986 TGCAATGTTACATACATATACAAACGG 58.661 33.333 0.00 0.00 46.75 4.44
7789 8257 8.707839 CGTGATGCAATGTTACATACATATACA 58.292 33.333 11.96 5.77 46.75 2.29
7828 8313 4.289934 TCCACCATATACCTGTCACCAAAA 59.710 41.667 0.00 0.00 0.00 2.44
7880 8373 0.386478 CTCAACCTTTGAAGCTGCGC 60.386 55.000 0.00 0.00 39.58 6.09
7920 8413 1.304282 GGCAAGAGCTCCCAATCCA 59.696 57.895 10.93 0.00 41.70 3.41
7921 8414 1.821332 CGGCAAGAGCTCCCAATCC 60.821 63.158 10.93 4.14 41.70 3.01
7922 8415 0.179034 ATCGGCAAGAGCTCCCAATC 60.179 55.000 10.93 0.00 41.70 2.67
7923 8416 0.257039 AATCGGCAAGAGCTCCCAAT 59.743 50.000 10.93 0.00 41.70 3.16
7924 8417 0.908910 TAATCGGCAAGAGCTCCCAA 59.091 50.000 10.93 0.00 41.70 4.12
7925 8418 1.131638 ATAATCGGCAAGAGCTCCCA 58.868 50.000 10.93 0.00 41.70 4.37
7926 8419 3.618690 ATATAATCGGCAAGAGCTCCC 57.381 47.619 10.93 3.51 41.70 4.30
7927 8420 4.569943 TGAATATAATCGGCAAGAGCTCC 58.430 43.478 10.93 0.00 41.70 4.70
7928 8421 5.776519 CTGAATATAATCGGCAAGAGCTC 57.223 43.478 5.27 5.27 41.70 4.09
7937 8430 4.932200 GTGGAGGAAGCTGAATATAATCGG 59.068 45.833 0.00 0.00 0.00 4.18
7938 8431 4.932200 GGTGGAGGAAGCTGAATATAATCG 59.068 45.833 0.00 0.00 0.00 3.34
7939 8432 5.869579 TGGTGGAGGAAGCTGAATATAATC 58.130 41.667 0.00 0.00 0.00 1.75
7940 8433 5.912149 TGGTGGAGGAAGCTGAATATAAT 57.088 39.130 0.00 0.00 0.00 1.28
8040 8533 2.159352 CCATTGCGCATTTCACTGATCA 60.159 45.455 12.75 0.00 0.00 2.92
8041 8534 2.456989 CCATTGCGCATTTCACTGATC 58.543 47.619 12.75 0.00 0.00 2.92
8042 8535 1.135527 CCCATTGCGCATTTCACTGAT 59.864 47.619 12.75 0.00 0.00 2.90
8043 8536 0.527113 CCCATTGCGCATTTCACTGA 59.473 50.000 12.75 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.