Multiple sequence alignment - TraesCS7A01G470100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G470100 chr7A 100.000 4070 0 0 1 4070 666508169 666504100 0.000000e+00 7516.0
1 TraesCS7A01G470100 chr7A 98.088 680 10 3 3393 4070 533754643 533753965 0.000000e+00 1181.0
2 TraesCS7A01G470100 chr7A 98.077 676 11 2 3397 4070 342198897 342199572 0.000000e+00 1175.0
3 TraesCS7A01G470100 chr7A 97.932 677 12 2 3396 4070 711745988 711746664 0.000000e+00 1171.0
4 TraesCS7A01G470100 chr7A 97.794 680 12 3 3394 4070 155179198 155178519 0.000000e+00 1170.0
5 TraesCS7A01G470100 chr7A 79.239 1392 191 58 1068 2395 666213473 666212116 0.000000e+00 880.0
6 TraesCS7A01G470100 chr7A 88.119 606 40 21 629 1232 666590956 666590381 0.000000e+00 691.0
7 TraesCS7A01G470100 chr7A 83.981 618 78 17 3 609 666227586 666226979 1.270000e-159 573.0
8 TraesCS7A01G470100 chr7A 80.472 635 65 30 630 1232 666569169 666568562 8.080000e-117 431.0
9 TraesCS7A01G470100 chr7A 74.264 645 99 46 3 624 666575026 666574426 4.120000e-50 209.0
10 TraesCS7A01G470100 chr7A 87.879 165 13 4 442 604 666591114 666590955 1.930000e-43 187.0
11 TraesCS7A01G470100 chr7A 90.291 103 10 0 1851 1953 666589875 666589773 7.100000e-28 135.0
12 TraesCS7A01G470100 chr7A 95.946 74 3 0 3170 3243 660971805 660971732 1.990000e-23 121.0
13 TraesCS7A01G470100 chr7A 78.836 189 25 6 395 581 666534947 666534772 3.320000e-21 113.0
14 TraesCS7A01G470100 chr7A 92.754 69 5 0 2229 2297 666589512 666589444 2.590000e-17 100.0
15 TraesCS7A01G470100 chr7D 89.766 1368 73 25 2 1306 575744755 575743392 0.000000e+00 1688.0
16 TraesCS7A01G470100 chr7D 88.606 1141 83 16 1335 2432 575743177 575742041 0.000000e+00 1343.0
17 TraesCS7A01G470100 chr7D 92.445 728 38 5 2430 3152 575742010 575741295 0.000000e+00 1024.0
18 TraesCS7A01G470100 chr7D 82.517 755 94 27 3 749 575709279 575708555 2.670000e-176 628.0
19 TraesCS7A01G470100 chr7D 80.177 903 109 35 1540 2395 575691883 575691004 2.690000e-171 612.0
20 TraesCS7A01G470100 chr7D 86.589 343 28 14 629 961 575821636 575821302 2.990000e-96 363.0
21 TraesCS7A01G470100 chr7D 80.550 509 53 27 750 1253 575692549 575692082 2.330000e-92 350.0
22 TraesCS7A01G470100 chr7D 78.537 629 47 38 668 1240 575775058 575774462 2.340000e-87 333.0
23 TraesCS7A01G470100 chr7D 88.485 165 12 4 442 604 575821794 575821635 4.150000e-45 193.0
24 TraesCS7A01G470100 chr7D 93.137 102 7 0 1851 1952 575820459 575820358 2.530000e-32 150.0
25 TraesCS7A01G470100 chr7D 92.537 67 5 0 2231 2297 575820090 575820024 3.350000e-16 97.1
26 TraesCS7A01G470100 chrUn 90.145 1035 67 11 1141 2168 86901714 86902720 0.000000e+00 1314.0
27 TraesCS7A01G470100 chrUn 85.320 1015 91 37 2164 3152 86902748 86903730 0.000000e+00 996.0
28 TraesCS7A01G470100 chrUn 93.478 230 12 2 3170 3396 187228906 187228677 5.040000e-89 339.0
29 TraesCS7A01G470100 chrUn 95.455 88 4 0 3170 3257 480515081 480514994 1.530000e-29 141.0
30 TraesCS7A01G470100 chr3A 98.378 678 9 2 3395 4070 169768594 169769271 0.000000e+00 1190.0
31 TraesCS7A01G470100 chr3A 98.077 676 11 2 3397 4070 140748643 140749318 0.000000e+00 1175.0
32 TraesCS7A01G470100 chr3A 95.946 74 3 0 3170 3243 184623644 184623571 1.990000e-23 121.0
33 TraesCS7A01G470100 chr3A 95.946 74 3 0 3170 3243 357838345 357838272 1.990000e-23 121.0
34 TraesCS7A01G470100 chr4A 98.220 674 11 1 3397 4069 103761745 103761072 0.000000e+00 1177.0
35 TraesCS7A01G470100 chr2A 98.080 677 10 3 3397 4070 480304505 480305181 0.000000e+00 1175.0
36 TraesCS7A01G470100 chr2A 88.679 159 15 3 3160 3317 279489760 279489604 1.490000e-44 191.0
37 TraesCS7A01G470100 chr2A 92.000 50 4 0 2723 2772 180663509 180663558 2.030000e-08 71.3
38 TraesCS7A01G470100 chr2A 85.000 60 7 2 1873 1931 656967813 656967755 4.390000e-05 60.2
39 TraesCS7A01G470100 chr1A 98.080 677 10 3 3397 4070 65337739 65338415 0.000000e+00 1175.0
40 TraesCS7A01G470100 chr7B 78.785 971 105 46 1448 2365 637823262 637822340 3.550000e-155 558.0
41 TraesCS7A01G470100 chr7B 80.769 468 50 25 284 741 637824445 637824008 3.030000e-86 329.0
42 TraesCS7A01G470100 chr7B 90.800 250 12 4 622 871 637960389 637960151 1.410000e-84 324.0
43 TraesCS7A01G470100 chr7B 85.890 326 19 2 636 961 637880035 637879737 5.070000e-84 322.0
44 TraesCS7A01G470100 chr7B 85.526 304 30 10 945 1243 637951220 637950926 5.110000e-79 305.0
45 TraesCS7A01G470100 chr7B 79.184 490 49 27 750 1237 637823957 637823519 1.430000e-74 291.0
46 TraesCS7A01G470100 chr7B 91.781 146 12 0 1095 1240 637916317 637916172 1.920000e-48 204.0
47 TraesCS7A01G470100 chr7B 84.127 189 21 5 442 624 637893283 637893098 1.500000e-39 174.0
48 TraesCS7A01G470100 chr7B 84.127 189 21 5 442 624 637917049 637916864 1.500000e-39 174.0
49 TraesCS7A01G470100 chr7B 92.157 102 8 0 1851 1952 637950408 637950307 1.180000e-30 145.0
50 TraesCS7A01G470100 chr7B 91.304 69 6 0 2229 2297 637950048 637949980 1.200000e-15 95.3
51 TraesCS7A01G470100 chr6A 94.348 230 10 2 3170 3396 11306476 11306705 2.330000e-92 350.0
52 TraesCS7A01G470100 chr6A 94.089 203 10 2 3170 3370 149025201 149024999 1.420000e-79 307.0
53 TraesCS7A01G470100 chr6D 89.542 153 4 5 3170 3317 20925760 20925905 2.500000e-42 183.0
54 TraesCS7A01G470100 chr6D 86.139 101 7 4 3264 3357 169713290 169713390 7.200000e-18 102.0
55 TraesCS7A01G470100 chr6D 97.872 47 0 1 3312 3357 20930374 20930420 3.370000e-11 80.5
56 TraesCS7A01G470100 chr3D 86.719 128 8 5 3239 3357 380269484 380269611 2.550000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G470100 chr7A 666504100 666508169 4069 True 7516.000000 7516 100.000000 1 4070 1 chr7A.!!$R6 4069
1 TraesCS7A01G470100 chr7A 533753965 533754643 678 True 1181.000000 1181 98.088000 3393 4070 1 chr7A.!!$R2 677
2 TraesCS7A01G470100 chr7A 342198897 342199572 675 False 1175.000000 1175 98.077000 3397 4070 1 chr7A.!!$F1 673
3 TraesCS7A01G470100 chr7A 711745988 711746664 676 False 1171.000000 1171 97.932000 3396 4070 1 chr7A.!!$F2 674
4 TraesCS7A01G470100 chr7A 155178519 155179198 679 True 1170.000000 1170 97.794000 3394 4070 1 chr7A.!!$R1 676
5 TraesCS7A01G470100 chr7A 666212116 666213473 1357 True 880.000000 880 79.239000 1068 2395 1 chr7A.!!$R4 1327
6 TraesCS7A01G470100 chr7A 666226979 666227586 607 True 573.000000 573 83.981000 3 609 1 chr7A.!!$R5 606
7 TraesCS7A01G470100 chr7A 666568562 666569169 607 True 431.000000 431 80.472000 630 1232 1 chr7A.!!$R8 602
8 TraesCS7A01G470100 chr7A 666589444 666591114 1670 True 278.250000 691 89.760750 442 2297 4 chr7A.!!$R10 1855
9 TraesCS7A01G470100 chr7A 666574426 666575026 600 True 209.000000 209 74.264000 3 624 1 chr7A.!!$R9 621
10 TraesCS7A01G470100 chr7D 575741295 575744755 3460 True 1351.666667 1688 90.272333 2 3152 3 chr7D.!!$R4 3150
11 TraesCS7A01G470100 chr7D 575708555 575709279 724 True 628.000000 628 82.517000 3 749 1 chr7D.!!$R1 746
12 TraesCS7A01G470100 chr7D 575691004 575692549 1545 True 481.000000 612 80.363500 750 2395 2 chr7D.!!$R3 1645
13 TraesCS7A01G470100 chr7D 575774462 575775058 596 True 333.000000 333 78.537000 668 1240 1 chr7D.!!$R2 572
14 TraesCS7A01G470100 chr7D 575820024 575821794 1770 True 200.775000 363 90.187000 442 2297 4 chr7D.!!$R5 1855
15 TraesCS7A01G470100 chrUn 86901714 86903730 2016 False 1155.000000 1314 87.732500 1141 3152 2 chrUn.!!$F1 2011
16 TraesCS7A01G470100 chr3A 169768594 169769271 677 False 1190.000000 1190 98.378000 3395 4070 1 chr3A.!!$F2 675
17 TraesCS7A01G470100 chr3A 140748643 140749318 675 False 1175.000000 1175 98.077000 3397 4070 1 chr3A.!!$F1 673
18 TraesCS7A01G470100 chr4A 103761072 103761745 673 True 1177.000000 1177 98.220000 3397 4069 1 chr4A.!!$R1 672
19 TraesCS7A01G470100 chr2A 480304505 480305181 676 False 1175.000000 1175 98.080000 3397 4070 1 chr2A.!!$F2 673
20 TraesCS7A01G470100 chr1A 65337739 65338415 676 False 1175.000000 1175 98.080000 3397 4070 1 chr1A.!!$F1 673
21 TraesCS7A01G470100 chr7B 637822340 637824445 2105 True 392.666667 558 79.579333 284 2365 3 chr7B.!!$R4 2081

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
677 770 0.465097 CTCATGGATGTGGACAGGCC 60.465 60.0 0.0 0.0 37.10 5.19 F
1970 2752 0.250124 CAACTCCACCTGCAACGGTA 60.250 55.0 0.0 0.0 34.94 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2215 3050 0.235926 GTCTGCAAAACCAGCTCGTC 59.764 55.0 0.0 0.0 32.87 4.2 R
3338 4241 0.041833 CAGAAGGGGTGAGGGAGAGA 59.958 60.0 0.0 0.0 0.00 3.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 110 7.639113 TCTAAACGAATAAAGCCATTTCCAT 57.361 32.000 0.00 0.00 0.00 3.41
192 205 1.299541 CTATGCGCATTCGGTTTCCT 58.700 50.000 30.42 2.58 35.95 3.36
223 244 3.274288 GAGAAATCCGAGCATTTCCTGT 58.726 45.455 9.52 0.00 41.82 4.00
325 356 6.276091 ACAGTGTGCTCTACATATGTATGTG 58.724 40.000 15.81 11.41 45.77 3.21
361 440 7.621428 AGGTCATACGTACGTTGCTATATAT 57.379 36.000 27.92 8.28 0.00 0.86
362 441 8.722480 AGGTCATACGTACGTTGCTATATATA 57.278 34.615 27.92 4.23 0.00 0.86
363 442 9.334947 AGGTCATACGTACGTTGCTATATATAT 57.665 33.333 27.92 6.69 0.00 0.86
401 480 7.745620 AGGTTTCTCGAGTAATTTTGTCAAT 57.254 32.000 13.13 0.00 0.00 2.57
414 493 1.262417 TGTCAATCCTAGCGACACCA 58.738 50.000 0.00 0.00 34.83 4.17
439 522 2.949106 CGGATCATCAATGCCGCC 59.051 61.111 0.00 0.00 37.08 6.13
440 523 2.949106 GGATCATCAATGCCGCCG 59.051 61.111 0.00 0.00 0.00 6.46
675 768 2.113807 TCTCTCATGGATGTGGACAGG 58.886 52.381 0.00 0.00 0.00 4.00
676 769 0.543277 TCTCATGGATGTGGACAGGC 59.457 55.000 0.00 0.00 0.00 4.85
677 770 0.465097 CTCATGGATGTGGACAGGCC 60.465 60.000 0.00 0.00 37.10 5.19
731 826 1.524849 GATTCTTCCCGGCCTCTGC 60.525 63.158 0.00 0.00 0.00 4.26
815 957 3.266772 TCAGCCTTCTCTCTCTCTCTCTT 59.733 47.826 0.00 0.00 0.00 2.85
868 1055 3.895656 TCCATACATCGGCCCTATATAGC 59.104 47.826 4.04 0.00 0.00 2.97
958 1160 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
961 1163 4.170053 TCTCTCTCTCTCTCTCTCTCCCTA 59.830 50.000 0.00 0.00 0.00 3.53
962 1164 4.223953 TCTCTCTCTCTCTCTCTCCCTAC 58.776 52.174 0.00 0.00 0.00 3.18
963 1165 3.967326 CTCTCTCTCTCTCTCTCCCTACA 59.033 52.174 0.00 0.00 0.00 2.74
1061 1306 1.000896 ATTGAGTTGAAGGCCGGGG 60.001 57.895 2.18 0.00 0.00 5.73
1086 1335 1.381872 TAGCTGCAGGGAGAGGACC 60.382 63.158 17.12 0.00 0.00 4.46
1196 1446 1.432514 GCAGTTCATCGAAGCTGTCA 58.567 50.000 3.38 0.00 0.00 3.58
1256 1576 5.082251 TGCCTCACAGATATAGATGATGC 57.918 43.478 0.00 0.00 34.47 3.91
1535 2125 6.358991 TGCATCATAAACAAGATGAGATCCA 58.641 36.000 6.60 0.00 43.28 3.41
1570 2167 9.761504 TGATTGAATTATTTGTTGCTCAAGAAA 57.238 25.926 7.27 7.27 37.84 2.52
1574 2171 7.591057 TGAATTATTTGTTGCTCAAGAAAGTCG 59.409 33.333 10.06 0.00 37.06 4.18
1608 2205 5.066117 TGTGCAAACGATGTTTAACACCTTA 59.934 36.000 17.70 4.79 0.00 2.69
1762 2415 0.749818 TCGTGCTAGCTCTCTCTGGG 60.750 60.000 17.23 0.00 0.00 4.45
1764 2417 0.744281 GTGCTAGCTCTCTCTGGGTC 59.256 60.000 17.23 0.00 0.00 4.46
1765 2418 0.332972 TGCTAGCTCTCTCTGGGTCA 59.667 55.000 17.23 0.00 0.00 4.02
1766 2419 1.032014 GCTAGCTCTCTCTGGGTCAG 58.968 60.000 7.70 0.00 0.00 3.51
1767 2420 1.409521 GCTAGCTCTCTCTGGGTCAGA 60.410 57.143 7.70 0.00 38.25 3.27
1768 2421 2.948147 GCTAGCTCTCTCTGGGTCAGAA 60.948 54.545 7.70 0.00 40.18 3.02
1769 2422 2.317371 AGCTCTCTCTGGGTCAGAAA 57.683 50.000 0.00 0.00 40.18 2.52
1770 2423 1.899142 AGCTCTCTCTGGGTCAGAAAC 59.101 52.381 0.00 0.00 40.18 2.78
1773 2426 2.163412 CTCTCTCTGGGTCAGAAACTCG 59.837 54.545 0.00 0.00 40.18 4.18
1841 2614 3.921021 GTCTGGTGTTGACACTATCTTCG 59.079 47.826 13.40 0.00 45.73 3.79
1955 2728 4.464244 TGTACAGATCAAGCTCTAGCAACT 59.536 41.667 4.54 0.00 45.16 3.16
1970 2752 0.250124 CAACTCCACCTGCAACGGTA 60.250 55.000 0.00 0.00 34.94 4.02
2005 2787 2.105128 GATCGCCGTGGAGACCAG 59.895 66.667 0.00 0.00 32.34 4.00
2011 2793 2.029073 CGTGGAGACCAGCGTGTT 59.971 61.111 0.00 0.00 32.34 3.32
2044 2826 2.035626 AATGGCCACAGGAACGGG 59.964 61.111 8.16 0.00 0.00 5.28
2049 2831 2.046285 GCCACAGGAACGGGAATGG 61.046 63.158 0.00 0.00 0.00 3.16
2058 2843 4.141876 CGGGAATGGCATGGGGGT 62.142 66.667 0.00 0.00 0.00 4.95
2086 2871 1.025113 AGAGGATCGACGACGCTTCA 61.025 55.000 0.00 0.00 42.67 3.02
2144 2935 3.267483 GCGTACCAAATGTGAGTACCAT 58.733 45.455 8.31 0.00 34.22 3.55
2173 3001 6.482308 TGGCTGTTAACTCAGTTCTTTAACTC 59.518 38.462 7.22 0.00 44.28 3.01
2192 3027 5.892160 ACTCTAACTAGTGTTCGTATGCA 57.108 39.130 0.00 0.00 37.59 3.96
2215 3050 6.562270 GCATAACCGATCGAGTTGTTAATCAG 60.562 42.308 23.57 13.22 0.00 2.90
2219 3054 4.340263 CGATCGAGTTGTTAATCAGACGA 58.660 43.478 10.26 0.00 34.05 4.20
2248 3096 0.862283 GCAGACCGTCGATCGAAGAC 60.862 60.000 28.90 21.31 42.51 3.01
2412 3264 1.957177 TCTGGGAGTACATCGATGAGC 59.043 52.381 31.33 21.06 0.00 4.26
2426 3278 3.612423 TCGATGAGCACAAACTATGAACG 59.388 43.478 0.00 0.00 0.00 3.95
2436 3321 6.673316 GCACAAACTATGAACGAATCCTCTTC 60.673 42.308 0.00 0.00 0.00 2.87
2458 3343 3.379372 CCTTGCTTTCCATCATCGTTCAT 59.621 43.478 0.00 0.00 0.00 2.57
2461 3346 6.427853 CCTTGCTTTCCATCATCGTTCATATA 59.572 38.462 0.00 0.00 0.00 0.86
2534 3423 9.979578 TCATTTTTGTAAGTAGTTCGTTAGGTA 57.020 29.630 0.00 0.00 0.00 3.08
2542 3431 3.851976 AGTTCGTTAGGTAGCAGTCAG 57.148 47.619 0.00 0.00 0.00 3.51
2572 3461 0.521291 CAAACTACCACCATGGCACG 59.479 55.000 13.04 1.15 42.67 5.34
2632 3521 9.539825 AGTTCTATTGTAATATCAGCACTGAAG 57.460 33.333 4.14 0.00 43.58 3.02
2636 3525 6.609237 TTGTAATATCAGCACTGAAGCATC 57.391 37.500 4.14 0.00 43.58 3.91
2641 3530 8.997323 GTAATATCAGCACTGAAGCATCTTAAT 58.003 33.333 4.14 0.00 43.58 1.40
2705 3595 0.875908 GTCACGCTGACAGAAGCACA 60.876 55.000 6.65 0.00 46.22 4.57
2725 3615 1.964891 GTCAGAAGCAGCAGCAGCA 60.965 57.895 12.92 0.00 45.49 4.41
2726 3616 1.671379 TCAGAAGCAGCAGCAGCAG 60.671 57.895 12.92 0.00 45.49 4.24
2900 3796 4.083862 GTCACCGGCCTGGACCTC 62.084 72.222 18.74 4.53 42.00 3.85
2916 3812 0.961358 CCTCGACCTGAACCTCGACT 60.961 60.000 0.00 0.00 35.17 4.18
2930 3826 0.465705 TCGACTTGGCCATCTCATCC 59.534 55.000 6.09 0.00 0.00 3.51
2953 3849 5.221126 CCTCTTGTCTGTGATGTGATCGATA 60.221 44.000 0.00 0.00 0.00 2.92
2998 3894 5.181433 AGAGCTGCATGCATCTTTGTATATG 59.819 40.000 23.85 8.03 45.94 1.78
3006 3902 8.344831 GCATGCATCTTTGTATATGAAGTTACA 58.655 33.333 14.21 0.00 0.00 2.41
3044 3945 5.494632 TGTACCATAGATCGTGTAGTGTG 57.505 43.478 0.00 0.00 0.00 3.82
3088 3989 8.705594 AGGTTTCTTGCTAGCTATATGAGTTTA 58.294 33.333 17.23 0.00 0.00 2.01
3115 4018 1.689273 GACTGCCATACTCACTAGGGG 59.311 57.143 0.00 0.00 0.00 4.79
3123 4026 4.344390 CCATACTCACTAGGGGTTTCTACC 59.656 50.000 0.00 0.00 44.22 3.18
3152 4055 4.100529 GCGGTATATGCATGCATGATTTC 58.899 43.478 37.43 22.84 37.82 2.17
3153 4056 4.142534 GCGGTATATGCATGCATGATTTCT 60.143 41.667 37.43 17.28 37.82 2.52
3154 4057 5.620654 GCGGTATATGCATGCATGATTTCTT 60.621 40.000 37.43 16.54 37.82 2.52
3155 4058 6.403527 GCGGTATATGCATGCATGATTTCTTA 60.404 38.462 37.43 19.14 37.82 2.10
3156 4059 7.680350 GCGGTATATGCATGCATGATTTCTTAT 60.680 37.037 37.43 23.89 37.82 1.73
3157 4060 8.829612 CGGTATATGCATGCATGATTTCTTATA 58.170 33.333 37.43 22.94 37.82 0.98
3161 4064 6.904463 TGCATGCATGATTTCTTATATGGT 57.096 33.333 30.64 0.00 0.00 3.55
3162 4065 7.292713 TGCATGCATGATTTCTTATATGGTT 57.707 32.000 30.64 0.00 0.00 3.67
3163 4066 7.372714 TGCATGCATGATTTCTTATATGGTTC 58.627 34.615 30.64 6.47 0.00 3.62
3164 4067 7.014422 TGCATGCATGATTTCTTATATGGTTCA 59.986 33.333 30.64 9.05 0.00 3.18
3165 4068 8.033038 GCATGCATGATTTCTTATATGGTTCAT 58.967 33.333 30.64 0.00 0.00 2.57
3166 4069 9.923143 CATGCATGATTTCTTATATGGTTCATT 57.077 29.630 22.59 0.00 0.00 2.57
3179 4082 7.985634 ATATGGTTCATTTTTCACAATACGC 57.014 32.000 0.00 0.00 0.00 4.42
3180 4083 5.446143 TGGTTCATTTTTCACAATACGCT 57.554 34.783 0.00 0.00 0.00 5.07
3181 4084 5.837437 TGGTTCATTTTTCACAATACGCTT 58.163 33.333 0.00 0.00 0.00 4.68
3182 4085 6.276847 TGGTTCATTTTTCACAATACGCTTT 58.723 32.000 0.00 0.00 0.00 3.51
3183 4086 6.419413 TGGTTCATTTTTCACAATACGCTTTC 59.581 34.615 0.00 0.00 0.00 2.62
3184 4087 6.640907 GGTTCATTTTTCACAATACGCTTTCT 59.359 34.615 0.00 0.00 0.00 2.52
3185 4088 7.169140 GGTTCATTTTTCACAATACGCTTTCTT 59.831 33.333 0.00 0.00 0.00 2.52
3186 4089 8.539674 GTTCATTTTTCACAATACGCTTTCTTT 58.460 29.630 0.00 0.00 0.00 2.52
3187 4090 8.280909 TCATTTTTCACAATACGCTTTCTTTC 57.719 30.769 0.00 0.00 0.00 2.62
3188 4091 8.134895 TCATTTTTCACAATACGCTTTCTTTCT 58.865 29.630 0.00 0.00 0.00 2.52
3189 4092 7.908193 TTTTTCACAATACGCTTTCTTTCTC 57.092 32.000 0.00 0.00 0.00 2.87
3190 4093 6.861065 TTTCACAATACGCTTTCTTTCTCT 57.139 33.333 0.00 0.00 0.00 3.10
3191 4094 5.845985 TCACAATACGCTTTCTTTCTCTG 57.154 39.130 0.00 0.00 0.00 3.35
3192 4095 5.538118 TCACAATACGCTTTCTTTCTCTGA 58.462 37.500 0.00 0.00 0.00 3.27
3193 4096 5.989168 TCACAATACGCTTTCTTTCTCTGAA 59.011 36.000 0.00 0.00 0.00 3.02
3194 4097 6.650807 TCACAATACGCTTTCTTTCTCTGAAT 59.349 34.615 0.00 0.00 0.00 2.57
3195 4098 7.173218 TCACAATACGCTTTCTTTCTCTGAATT 59.827 33.333 0.00 0.00 0.00 2.17
3196 4099 7.805071 CACAATACGCTTTCTTTCTCTGAATTT 59.195 33.333 0.00 0.00 0.00 1.82
3197 4100 8.999431 ACAATACGCTTTCTTTCTCTGAATTTA 58.001 29.630 0.00 0.00 0.00 1.40
3198 4101 9.267096 CAATACGCTTTCTTTCTCTGAATTTAC 57.733 33.333 0.00 0.00 0.00 2.01
3199 4102 5.916969 ACGCTTTCTTTCTCTGAATTTACG 58.083 37.500 0.00 0.00 0.00 3.18
3200 4103 4.783540 CGCTTTCTTTCTCTGAATTTACGC 59.216 41.667 0.00 0.00 0.00 4.42
3201 4104 5.389935 CGCTTTCTTTCTCTGAATTTACGCT 60.390 40.000 0.00 0.00 0.00 5.07
3202 4105 6.374578 GCTTTCTTTCTCTGAATTTACGCTT 58.625 36.000 0.00 0.00 0.00 4.68
3203 4106 6.858478 GCTTTCTTTCTCTGAATTTACGCTTT 59.142 34.615 0.00 0.00 0.00 3.51
3204 4107 7.379797 GCTTTCTTTCTCTGAATTTACGCTTTT 59.620 33.333 0.00 0.00 0.00 2.27
3205 4108 9.878599 CTTTCTTTCTCTGAATTTACGCTTTTA 57.121 29.630 0.00 0.00 0.00 1.52
3206 4109 9.878599 TTTCTTTCTCTGAATTTACGCTTTTAG 57.121 29.630 0.00 0.00 0.00 1.85
3207 4110 8.603242 TCTTTCTCTGAATTTACGCTTTTAGT 57.397 30.769 0.00 0.00 0.00 2.24
3208 4111 9.052759 TCTTTCTCTGAATTTACGCTTTTAGTT 57.947 29.630 0.00 0.00 0.00 2.24
3209 4112 9.665264 CTTTCTCTGAATTTACGCTTTTAGTTT 57.335 29.630 0.00 0.00 0.00 2.66
3210 4113 9.445786 TTTCTCTGAATTTACGCTTTTAGTTTG 57.554 29.630 0.00 0.00 0.00 2.93
3211 4114 8.373048 TCTCTGAATTTACGCTTTTAGTTTGA 57.627 30.769 0.00 0.00 0.00 2.69
3212 4115 8.832521 TCTCTGAATTTACGCTTTTAGTTTGAA 58.167 29.630 0.00 0.00 0.00 2.69
3213 4116 9.612620 CTCTGAATTTACGCTTTTAGTTTGAAT 57.387 29.630 0.00 0.00 0.00 2.57
3214 4117 9.959749 TCTGAATTTACGCTTTTAGTTTGAATT 57.040 25.926 0.00 0.00 0.00 2.17
3235 4138 9.104965 TGAATTTAAAACATATAGACGAGGTGG 57.895 33.333 0.00 0.00 0.00 4.61
3236 4139 9.106070 GAATTTAAAACATATAGACGAGGTGGT 57.894 33.333 0.00 0.00 0.00 4.16
3238 4141 8.931385 TTTAAAACATATAGACGAGGTGGTAC 57.069 34.615 0.00 0.00 0.00 3.34
3239 4142 6.786967 AAAACATATAGACGAGGTGGTACT 57.213 37.500 0.00 0.00 0.00 2.73
3240 4143 7.886629 AAAACATATAGACGAGGTGGTACTA 57.113 36.000 0.00 0.00 0.00 1.82
3241 4144 7.886629 AAACATATAGACGAGGTGGTACTAA 57.113 36.000 0.00 0.00 0.00 2.24
3242 4145 8.474710 AAACATATAGACGAGGTGGTACTAAT 57.525 34.615 0.00 0.00 0.00 1.73
3243 4146 9.578576 AAACATATAGACGAGGTGGTACTAATA 57.421 33.333 0.00 0.00 0.00 0.98
3244 4147 9.750783 AACATATAGACGAGGTGGTACTAATAT 57.249 33.333 0.00 0.00 0.00 1.28
3245 4148 9.750783 ACATATAGACGAGGTGGTACTAATATT 57.249 33.333 0.00 0.00 0.00 1.28
3247 4150 9.970553 ATATAGACGAGGTGGTACTAATATTGA 57.029 33.333 0.00 0.00 0.00 2.57
3248 4151 6.388435 AGACGAGGTGGTACTAATATTGAC 57.612 41.667 0.00 0.00 0.00 3.18
3249 4152 5.301298 AGACGAGGTGGTACTAATATTGACC 59.699 44.000 0.00 3.86 0.00 4.02
3250 4153 4.343239 ACGAGGTGGTACTAATATTGACCC 59.657 45.833 11.43 2.36 0.00 4.46
3251 4154 4.342951 CGAGGTGGTACTAATATTGACCCA 59.657 45.833 11.43 4.46 0.00 4.51
3252 4155 5.608449 GAGGTGGTACTAATATTGACCCAC 58.392 45.833 14.91 14.91 40.05 4.61
3253 4156 5.286221 AGGTGGTACTAATATTGACCCACT 58.714 41.667 19.23 12.20 40.49 4.00
3254 4157 5.130477 AGGTGGTACTAATATTGACCCACTG 59.870 44.000 19.23 0.00 40.49 3.66
3255 4158 4.814771 GTGGTACTAATATTGACCCACTGC 59.185 45.833 15.52 0.00 38.24 4.40
3256 4159 4.141574 TGGTACTAATATTGACCCACTGCC 60.142 45.833 11.43 0.00 0.00 4.85
3257 4160 4.141574 GGTACTAATATTGACCCACTGCCA 60.142 45.833 0.00 0.00 0.00 4.92
3258 4161 3.886123 ACTAATATTGACCCACTGCCAC 58.114 45.455 0.00 0.00 0.00 5.01
3259 4162 2.143876 AATATTGACCCACTGCCACC 57.856 50.000 0.00 0.00 0.00 4.61
3260 4163 0.258774 ATATTGACCCACTGCCACCC 59.741 55.000 0.00 0.00 0.00 4.61
3261 4164 2.191786 TATTGACCCACTGCCACCCG 62.192 60.000 0.00 0.00 0.00 5.28
3263 4166 3.315949 GACCCACTGCCACCCGTA 61.316 66.667 0.00 0.00 0.00 4.02
3264 4167 2.850130 ACCCACTGCCACCCGTAA 60.850 61.111 0.00 0.00 0.00 3.18
3265 4168 2.046314 CCCACTGCCACCCGTAAG 60.046 66.667 0.00 0.00 0.00 2.34
3266 4169 2.747686 CCACTGCCACCCGTAAGT 59.252 61.111 0.00 0.00 0.00 2.24
3267 4170 1.546589 CCCACTGCCACCCGTAAGTA 61.547 60.000 0.00 0.00 0.00 2.24
3268 4171 0.322322 CCACTGCCACCCGTAAGTAA 59.678 55.000 0.00 0.00 0.00 2.24
3269 4172 1.270947 CCACTGCCACCCGTAAGTAAA 60.271 52.381 0.00 0.00 0.00 2.01
3270 4173 2.496111 CACTGCCACCCGTAAGTAAAA 58.504 47.619 0.00 0.00 0.00 1.52
3271 4174 2.879646 CACTGCCACCCGTAAGTAAAAA 59.120 45.455 0.00 0.00 0.00 1.94
3289 4192 3.870633 AAAAAGACCTAGCGAGTCGAT 57.129 42.857 18.61 13.78 39.31 3.59
3290 4193 3.423996 AAAAGACCTAGCGAGTCGATC 57.576 47.619 18.61 4.97 39.31 3.69
3291 4194 1.310904 AAGACCTAGCGAGTCGATCC 58.689 55.000 18.61 0.00 39.31 3.36
3292 4195 0.535553 AGACCTAGCGAGTCGATCCC 60.536 60.000 18.61 0.00 39.31 3.85
3293 4196 1.517210 GACCTAGCGAGTCGATCCCC 61.517 65.000 18.61 0.00 0.00 4.81
3294 4197 1.528542 CCTAGCGAGTCGATCCCCA 60.529 63.158 18.61 0.00 0.00 4.96
3295 4198 0.896019 CCTAGCGAGTCGATCCCCAT 60.896 60.000 18.61 0.00 0.00 4.00
3296 4199 0.523966 CTAGCGAGTCGATCCCCATC 59.476 60.000 18.61 0.00 0.00 3.51
3297 4200 0.110678 TAGCGAGTCGATCCCCATCT 59.889 55.000 18.61 3.40 0.00 2.90
3298 4201 1.175983 AGCGAGTCGATCCCCATCTC 61.176 60.000 18.61 0.00 0.00 2.75
3299 4202 1.960612 CGAGTCGATCCCCATCTCC 59.039 63.158 6.73 0.00 0.00 3.71
3300 4203 1.528292 CGAGTCGATCCCCATCTCCC 61.528 65.000 6.73 0.00 0.00 4.30
3301 4204 0.178947 GAGTCGATCCCCATCTCCCT 60.179 60.000 0.00 0.00 0.00 4.20
3302 4205 0.178947 AGTCGATCCCCATCTCCCTC 60.179 60.000 0.00 0.00 0.00 4.30
3303 4206 0.178947 GTCGATCCCCATCTCCCTCT 60.179 60.000 0.00 0.00 0.00 3.69
3304 4207 0.113385 TCGATCCCCATCTCCCTCTC 59.887 60.000 0.00 0.00 0.00 3.20
3305 4208 0.114168 CGATCCCCATCTCCCTCTCT 59.886 60.000 0.00 0.00 0.00 3.10
3306 4209 1.890573 CGATCCCCATCTCCCTCTCTC 60.891 61.905 0.00 0.00 0.00 3.20
3307 4210 0.491371 ATCCCCATCTCCCTCTCTCC 59.509 60.000 0.00 0.00 0.00 3.71
3308 4211 1.152139 CCCCATCTCCCTCTCTCCC 60.152 68.421 0.00 0.00 0.00 4.30
3309 4212 1.673928 CCCCATCTCCCTCTCTCCCT 61.674 65.000 0.00 0.00 0.00 4.20
3310 4213 0.178935 CCCATCTCCCTCTCTCCCTC 60.179 65.000 0.00 0.00 0.00 4.30
3311 4214 0.539438 CCATCTCCCTCTCTCCCTCG 60.539 65.000 0.00 0.00 0.00 4.63
3312 4215 0.476338 CATCTCCCTCTCTCCCTCGA 59.524 60.000 0.00 0.00 0.00 4.04
3313 4216 1.075374 CATCTCCCTCTCTCCCTCGAT 59.925 57.143 0.00 0.00 0.00 3.59
3314 4217 0.768622 TCTCCCTCTCTCCCTCGATC 59.231 60.000 0.00 0.00 0.00 3.69
3315 4218 0.251165 CTCCCTCTCTCCCTCGATCC 60.251 65.000 0.00 0.00 0.00 3.36
3316 4219 1.228737 CCCTCTCTCCCTCGATCCC 60.229 68.421 0.00 0.00 0.00 3.85
3317 4220 1.539165 CCTCTCTCCCTCGATCCCA 59.461 63.158 0.00 0.00 0.00 4.37
3318 4221 0.825840 CCTCTCTCCCTCGATCCCAC 60.826 65.000 0.00 0.00 0.00 4.61
3319 4222 0.106469 CTCTCTCCCTCGATCCCACA 60.106 60.000 0.00 0.00 0.00 4.17
3320 4223 0.106469 TCTCTCCCTCGATCCCACAG 60.106 60.000 0.00 0.00 0.00 3.66
3321 4224 1.075970 TCTCCCTCGATCCCACAGG 60.076 63.158 0.00 0.00 0.00 4.00
3322 4225 1.381872 CTCCCTCGATCCCACAGGT 60.382 63.158 0.00 0.00 0.00 4.00
3323 4226 1.381327 TCCCTCGATCCCACAGGTC 60.381 63.158 0.00 0.00 0.00 3.85
3324 4227 2.786495 CCCTCGATCCCACAGGTCG 61.786 68.421 0.00 0.00 37.76 4.79
3325 4228 2.105128 CTCGATCCCACAGGTCGC 59.895 66.667 0.00 0.00 36.92 5.19
3326 4229 3.758088 CTCGATCCCACAGGTCGCG 62.758 68.421 0.00 0.00 36.92 5.87
3327 4230 4.129737 CGATCCCACAGGTCGCGT 62.130 66.667 5.77 0.00 32.55 6.01
3328 4231 2.767445 CGATCCCACAGGTCGCGTA 61.767 63.158 5.77 0.00 32.55 4.42
3329 4232 1.226888 GATCCCACAGGTCGCGTAC 60.227 63.158 5.77 2.75 0.00 3.67
3330 4233 2.931713 GATCCCACAGGTCGCGTACG 62.932 65.000 11.84 11.84 42.01 3.67
3342 4245 3.797008 CGTACGACGCTCCTCTCT 58.203 61.111 10.44 0.00 33.65 3.10
3343 4246 1.637402 CGTACGACGCTCCTCTCTC 59.363 63.158 10.44 0.00 33.65 3.20
3344 4247 1.764180 CGTACGACGCTCCTCTCTCC 61.764 65.000 10.44 0.00 33.65 3.71
3345 4248 1.153208 TACGACGCTCCTCTCTCCC 60.153 63.158 0.00 0.00 0.00 4.30
3346 4249 1.624479 TACGACGCTCCTCTCTCCCT 61.624 60.000 0.00 0.00 0.00 4.20
3347 4250 2.184167 CGACGCTCCTCTCTCCCTC 61.184 68.421 0.00 0.00 0.00 4.30
3348 4251 1.077357 GACGCTCCTCTCTCCCTCA 60.077 63.158 0.00 0.00 0.00 3.86
3349 4252 1.379309 ACGCTCCTCTCTCCCTCAC 60.379 63.158 0.00 0.00 0.00 3.51
3350 4253 2.124693 CGCTCCTCTCTCCCTCACC 61.125 68.421 0.00 0.00 0.00 4.02
3351 4254 1.760480 GCTCCTCTCTCCCTCACCC 60.760 68.421 0.00 0.00 0.00 4.61
3352 4255 1.075600 CTCCTCTCTCCCTCACCCC 60.076 68.421 0.00 0.00 0.00 4.95
3353 4256 1.547755 TCCTCTCTCCCTCACCCCT 60.548 63.158 0.00 0.00 0.00 4.79
3354 4257 1.156322 TCCTCTCTCCCTCACCCCTT 61.156 60.000 0.00 0.00 0.00 3.95
3355 4258 0.689412 CCTCTCTCCCTCACCCCTTC 60.689 65.000 0.00 0.00 0.00 3.46
3356 4259 0.338120 CTCTCTCCCTCACCCCTTCT 59.662 60.000 0.00 0.00 0.00 2.85
3357 4260 0.041833 TCTCTCCCTCACCCCTTCTG 59.958 60.000 0.00 0.00 0.00 3.02
3358 4261 0.252467 CTCTCCCTCACCCCTTCTGT 60.252 60.000 0.00 0.00 0.00 3.41
3359 4262 0.545309 TCTCCCTCACCCCTTCTGTG 60.545 60.000 0.00 0.00 35.01 3.66
3360 4263 2.190488 CTCCCTCACCCCTTCTGTGC 62.190 65.000 0.00 0.00 33.71 4.57
3361 4264 2.528818 CCCTCACCCCTTCTGTGCA 61.529 63.158 0.00 0.00 33.71 4.57
3362 4265 1.302832 CCTCACCCCTTCTGTGCAC 60.303 63.158 10.75 10.75 33.71 4.57
3363 4266 1.302832 CTCACCCCTTCTGTGCACC 60.303 63.158 15.69 0.00 33.71 5.01
3364 4267 2.055689 CTCACCCCTTCTGTGCACCA 62.056 60.000 15.69 1.31 33.71 4.17
3365 4268 1.898574 CACCCCTTCTGTGCACCAC 60.899 63.158 15.69 0.00 34.56 4.16
3366 4269 2.282462 CCCCTTCTGTGCACCACC 60.282 66.667 15.69 0.00 32.73 4.61
3367 4270 2.669569 CCCTTCTGTGCACCACCG 60.670 66.667 15.69 0.04 32.73 4.94
3368 4271 2.669569 CCTTCTGTGCACCACCGG 60.670 66.667 15.69 0.00 32.73 5.28
3369 4272 3.357079 CTTCTGTGCACCACCGGC 61.357 66.667 15.69 0.00 32.73 6.13
3370 4273 4.947147 TTCTGTGCACCACCGGCC 62.947 66.667 15.69 0.00 32.73 6.13
3509 4413 1.078528 TTCAGGCCCTTCTCGGAGA 59.921 57.895 2.97 2.97 33.16 3.71
3802 4708 4.221924 TGGTTGGAATCTGTCGAGTGATTA 59.778 41.667 11.37 0.00 33.60 1.75
3826 4732 2.035449 TCGTGGTCGAGTGTCTTGAATT 59.965 45.455 0.00 0.00 41.35 2.17
3990 4896 2.043115 GGGAAGGAGTTGGGGATCTTTT 59.957 50.000 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 110 3.666638 CGAAAAGCGTGTGTGAATGCATA 60.667 43.478 0.00 0.00 34.35 3.14
178 191 2.032924 GGGAAATAGGAAACCGAATGCG 59.967 50.000 0.00 0.00 37.24 4.73
192 205 3.181454 GCTCGGATTTCTCCAGGGAAATA 60.181 47.826 5.49 0.00 43.36 1.40
373 452 9.932207 TGACAAAATTACTCGAGAAACCTATTA 57.068 29.630 21.68 0.00 0.00 0.98
379 458 7.807680 AGGATTGACAAAATTACTCGAGAAAC 58.192 34.615 21.68 0.00 0.00 2.78
401 480 0.888619 CACTCTTGGTGTCGCTAGGA 59.111 55.000 0.00 0.00 40.79 2.94
414 493 3.201290 GCATTGATGATCCGTCACTCTT 58.799 45.455 0.00 0.00 37.14 2.85
439 522 4.947077 AATTTAAGCTTTGTTCAACGCG 57.053 36.364 3.20 3.53 0.00 6.01
440 523 6.120157 GTGAAATTTAAGCTTTGTTCAACGC 58.880 36.000 3.20 6.00 0.00 4.84
675 768 0.309612 TTCGAGAAAAAGTTGGCGGC 59.690 50.000 0.00 0.00 0.00 6.53
676 769 2.989422 ATTCGAGAAAAAGTTGGCGG 57.011 45.000 0.00 0.00 0.00 6.13
677 770 3.425193 CCAAATTCGAGAAAAAGTTGGCG 59.575 43.478 0.79 0.00 42.68 5.69
815 957 3.680490 TCGAAGAGAGAGCAAGAGAGAA 58.320 45.455 0.00 0.00 0.00 2.87
1061 1306 0.673437 CTCCCTGCAGCTAGCTAGAC 59.327 60.000 25.15 15.03 45.94 2.59
1086 1335 6.205076 CCTCTCAAATCCTCTCATGCTTTATG 59.795 42.308 0.00 0.00 38.17 1.90
1256 1576 2.197324 CGGAGAGAGAGGGGGAGG 59.803 72.222 0.00 0.00 0.00 4.30
1446 2002 2.039084 ACTTGAACCAACTCCTGCCTAG 59.961 50.000 0.00 0.00 0.00 3.02
1570 2167 5.086058 CGTTTGCACAATTAATTAGCGACT 58.914 37.500 15.77 0.00 0.00 4.18
1574 2171 6.869421 ACATCGTTTGCACAATTAATTAGC 57.131 33.333 14.59 14.59 0.00 3.09
1636 2246 2.438021 ACAGGAGAGCGGCCATTTATTA 59.562 45.455 2.24 0.00 0.00 0.98
1762 2415 6.645415 TCTTGATTAAGTTCCGAGTTTCTGAC 59.355 38.462 0.00 0.00 35.38 3.51
1764 2417 6.647067 ACTCTTGATTAAGTTCCGAGTTTCTG 59.353 38.462 0.00 0.00 35.38 3.02
1765 2418 6.760291 ACTCTTGATTAAGTTCCGAGTTTCT 58.240 36.000 0.00 0.00 35.38 2.52
1766 2419 7.201453 GCTACTCTTGATTAAGTTCCGAGTTTC 60.201 40.741 0.00 0.00 35.38 2.78
1767 2420 6.590677 GCTACTCTTGATTAAGTTCCGAGTTT 59.409 38.462 0.00 0.00 35.38 2.66
1768 2421 6.100668 GCTACTCTTGATTAAGTTCCGAGTT 58.899 40.000 0.00 0.00 35.38 3.01
1769 2422 5.185249 TGCTACTCTTGATTAAGTTCCGAGT 59.815 40.000 0.00 0.00 35.38 4.18
1770 2423 5.651530 TGCTACTCTTGATTAAGTTCCGAG 58.348 41.667 0.00 0.00 35.38 4.63
1773 2426 8.499403 AGAATTGCTACTCTTGATTAAGTTCC 57.501 34.615 0.00 0.00 35.38 3.62
1870 2643 1.811558 GCGCCCATCAGCTGAAGAATA 60.812 52.381 22.50 0.00 0.00 1.75
1955 2728 1.070105 GTGTACCGTTGCAGGTGGA 59.930 57.895 7.87 0.00 45.54 4.02
1970 2752 2.668212 CACGGACGCATTGGGTGT 60.668 61.111 11.48 1.10 44.56 4.16
2005 2787 4.322385 GGCCCGTCAACAACACGC 62.322 66.667 0.00 0.00 35.87 5.34
2011 2793 0.964860 CATTCCATGGCCCGTCAACA 60.965 55.000 6.96 0.00 0.00 3.33
2044 2826 3.156556 GCCACCCCCATGCCATTC 61.157 66.667 0.00 0.00 0.00 2.67
2058 2843 1.076995 TCGATCCTCTCCGAAGCCA 60.077 57.895 0.00 0.00 0.00 4.75
2086 2871 1.632965 GGGAAGGCACGGGGTAAGAT 61.633 60.000 0.00 0.00 0.00 2.40
2123 2914 2.690786 TGGTACTCACATTTGGTACGC 58.309 47.619 0.00 0.00 37.33 4.42
2144 2935 7.817418 AAAGAACTGAGTTAACAGCCAATTA 57.183 32.000 8.61 0.00 41.06 1.40
2158 2954 9.968870 AACACTAGTTAGAGTTAAAGAACTGAG 57.031 33.333 0.00 0.00 40.16 3.35
2173 3001 6.141844 CGGTTATGCATACGAACACTAGTTAG 59.858 42.308 5.74 0.00 38.30 2.34
2192 3027 6.696148 GTCTGATTAACAACTCGATCGGTTAT 59.304 38.462 16.41 12.12 0.00 1.89
2215 3050 0.235926 GTCTGCAAAACCAGCTCGTC 59.764 55.000 0.00 0.00 32.87 4.20
2219 3054 1.152963 ACGGTCTGCAAAACCAGCT 60.153 52.632 16.04 0.00 36.53 4.24
2248 3096 1.301677 GCTCCCAGCTCCTGAAAACG 61.302 60.000 0.00 0.00 38.45 3.60
2287 3135 0.682209 ATGGCATGCTGGAGTTCCAC 60.682 55.000 18.92 0.00 42.01 4.02
2353 3204 5.334802 CGTTAATCCATTGTTTGTCTCAGCA 60.335 40.000 0.00 0.00 0.00 4.41
2395 3247 1.409064 TGTGCTCATCGATGTACTCCC 59.591 52.381 24.09 9.74 0.00 4.30
2412 3264 6.183360 GGAAGAGGATTCGTTCATAGTTTGTG 60.183 42.308 0.00 0.00 0.00 3.33
2426 3278 3.690460 TGGAAAGCAAGGAAGAGGATTC 58.310 45.455 0.00 0.00 0.00 2.52
2436 3321 2.749076 TGAACGATGATGGAAAGCAAGG 59.251 45.455 0.00 0.00 0.00 3.61
2491 3380 8.778358 ACAAAAATGAAGCTTCTAGTTAGACAG 58.222 33.333 26.09 9.58 30.81 3.51
2498 3387 9.780186 ACTACTTACAAAAATGAAGCTTCTAGT 57.220 29.630 26.09 16.73 0.00 2.57
2632 3521 3.571401 CCATGTCAGGGGAATTAAGATGC 59.429 47.826 0.00 0.00 0.00 3.91
2636 3525 2.954318 CAGCCATGTCAGGGGAATTAAG 59.046 50.000 5.53 0.00 0.00 1.85
2641 3530 0.256752 CATCAGCCATGTCAGGGGAA 59.743 55.000 5.53 0.00 0.00 3.97
2705 3595 1.667191 CTGCTGCTGCTTCTGACGT 60.667 57.895 17.00 0.00 40.48 4.34
2805 3701 1.215382 CGGTGGTCATGCTCGAGAA 59.785 57.895 18.75 5.90 0.00 2.87
2837 3733 1.306141 TCCTCGATCCCTTGCTGGT 60.306 57.895 0.00 0.00 0.00 4.00
2840 3736 2.439104 GGCTCCTCGATCCCTTGCT 61.439 63.158 0.00 0.00 0.00 3.91
2891 3787 1.592223 GTTCAGGTCGAGGTCCAGG 59.408 63.158 0.00 0.00 0.00 4.45
2900 3796 0.388649 CCAAGTCGAGGTTCAGGTCG 60.389 60.000 0.00 0.00 37.54 4.79
2916 3812 1.918262 ACAAGAGGATGAGATGGCCAA 59.082 47.619 10.96 0.00 0.00 4.52
2930 3826 4.102035 TCGATCACATCACAGACAAGAG 57.898 45.455 0.00 0.00 0.00 2.85
2953 3849 8.174085 AGCTCTATATATTTACACAGGGAGAGT 58.826 37.037 0.00 0.00 31.43 3.24
3044 3945 6.940867 AGAAACCTCAGAAATTTACTACCACC 59.059 38.462 0.00 0.00 0.00 4.61
3088 3989 5.683876 AGTGAGTATGGCAGTCTACAAAT 57.316 39.130 0.00 0.00 0.00 2.32
3123 4026 3.059257 TGCATGCATATACCGCTAAAACG 60.059 43.478 18.46 0.00 0.00 3.60
3153 4056 9.509855 GCGTATTGTGAAAAATGAACCATATAA 57.490 29.630 0.00 0.00 0.00 0.98
3154 4057 8.898761 AGCGTATTGTGAAAAATGAACCATATA 58.101 29.630 0.00 0.00 0.00 0.86
3155 4058 7.771183 AGCGTATTGTGAAAAATGAACCATAT 58.229 30.769 0.00 0.00 0.00 1.78
3156 4059 7.151999 AGCGTATTGTGAAAAATGAACCATA 57.848 32.000 0.00 0.00 0.00 2.74
3157 4060 6.024552 AGCGTATTGTGAAAAATGAACCAT 57.975 33.333 0.00 0.00 0.00 3.55
3158 4061 5.446143 AGCGTATTGTGAAAAATGAACCA 57.554 34.783 0.00 0.00 0.00 3.67
3159 4062 6.640907 AGAAAGCGTATTGTGAAAAATGAACC 59.359 34.615 0.00 0.00 0.00 3.62
3160 4063 7.623268 AGAAAGCGTATTGTGAAAAATGAAC 57.377 32.000 0.00 0.00 0.00 3.18
3161 4064 8.641499 AAAGAAAGCGTATTGTGAAAAATGAA 57.359 26.923 0.00 0.00 0.00 2.57
3162 4065 8.134895 AGAAAGAAAGCGTATTGTGAAAAATGA 58.865 29.630 0.00 0.00 0.00 2.57
3163 4066 8.285776 AGAAAGAAAGCGTATTGTGAAAAATG 57.714 30.769 0.00 0.00 0.00 2.32
3164 4067 8.352942 AGAGAAAGAAAGCGTATTGTGAAAAAT 58.647 29.630 0.00 0.00 0.00 1.82
3165 4068 7.643764 CAGAGAAAGAAAGCGTATTGTGAAAAA 59.356 33.333 0.00 0.00 0.00 1.94
3166 4069 7.011950 TCAGAGAAAGAAAGCGTATTGTGAAAA 59.988 33.333 0.00 0.00 0.00 2.29
3167 4070 6.481976 TCAGAGAAAGAAAGCGTATTGTGAAA 59.518 34.615 0.00 0.00 0.00 2.69
3168 4071 5.989168 TCAGAGAAAGAAAGCGTATTGTGAA 59.011 36.000 0.00 0.00 0.00 3.18
3169 4072 5.538118 TCAGAGAAAGAAAGCGTATTGTGA 58.462 37.500 0.00 0.00 0.00 3.58
3170 4073 5.845985 TCAGAGAAAGAAAGCGTATTGTG 57.154 39.130 0.00 0.00 0.00 3.33
3171 4074 7.440523 AATTCAGAGAAAGAAAGCGTATTGT 57.559 32.000 0.00 0.00 0.00 2.71
3172 4075 9.267096 GTAAATTCAGAGAAAGAAAGCGTATTG 57.733 33.333 0.00 0.00 0.00 1.90
3173 4076 8.169268 CGTAAATTCAGAGAAAGAAAGCGTATT 58.831 33.333 0.00 0.00 0.00 1.89
3174 4077 7.674240 GCGTAAATTCAGAGAAAGAAAGCGTAT 60.674 37.037 0.00 0.00 0.00 3.06
3175 4078 6.400727 GCGTAAATTCAGAGAAAGAAAGCGTA 60.401 38.462 0.00 0.00 0.00 4.42
3176 4079 5.614887 GCGTAAATTCAGAGAAAGAAAGCGT 60.615 40.000 0.00 0.00 0.00 5.07
3177 4080 4.783540 GCGTAAATTCAGAGAAAGAAAGCG 59.216 41.667 0.00 0.00 0.00 4.68
3178 4081 5.932661 AGCGTAAATTCAGAGAAAGAAAGC 58.067 37.500 0.00 0.00 0.00 3.51
3179 4082 8.788409 AAAAGCGTAAATTCAGAGAAAGAAAG 57.212 30.769 0.00 0.00 0.00 2.62
3180 4083 9.878599 CTAAAAGCGTAAATTCAGAGAAAGAAA 57.121 29.630 0.00 0.00 0.00 2.52
3181 4084 9.052759 ACTAAAAGCGTAAATTCAGAGAAAGAA 57.947 29.630 0.00 0.00 0.00 2.52
3182 4085 8.603242 ACTAAAAGCGTAAATTCAGAGAAAGA 57.397 30.769 0.00 0.00 0.00 2.52
3183 4086 9.665264 AAACTAAAAGCGTAAATTCAGAGAAAG 57.335 29.630 0.00 0.00 0.00 2.62
3184 4087 9.445786 CAAACTAAAAGCGTAAATTCAGAGAAA 57.554 29.630 0.00 0.00 0.00 2.52
3185 4088 8.832521 TCAAACTAAAAGCGTAAATTCAGAGAA 58.167 29.630 0.00 0.00 0.00 2.87
3186 4089 8.373048 TCAAACTAAAAGCGTAAATTCAGAGA 57.627 30.769 0.00 0.00 0.00 3.10
3187 4090 9.612620 ATTCAAACTAAAAGCGTAAATTCAGAG 57.387 29.630 0.00 0.00 0.00 3.35
3188 4091 9.959749 AATTCAAACTAAAAGCGTAAATTCAGA 57.040 25.926 0.00 0.00 0.00 3.27
3209 4112 9.104965 CCACCTCGTCTATATGTTTTAAATTCA 57.895 33.333 0.00 0.00 0.00 2.57
3210 4113 9.106070 ACCACCTCGTCTATATGTTTTAAATTC 57.894 33.333 0.00 0.00 0.00 2.17
3212 4115 9.538508 GTACCACCTCGTCTATATGTTTTAAAT 57.461 33.333 0.00 0.00 0.00 1.40
3213 4116 8.752187 AGTACCACCTCGTCTATATGTTTTAAA 58.248 33.333 0.00 0.00 0.00 1.52
3214 4117 8.297470 AGTACCACCTCGTCTATATGTTTTAA 57.703 34.615 0.00 0.00 0.00 1.52
3215 4118 7.886629 AGTACCACCTCGTCTATATGTTTTA 57.113 36.000 0.00 0.00 0.00 1.52
3216 4119 6.786967 AGTACCACCTCGTCTATATGTTTT 57.213 37.500 0.00 0.00 0.00 2.43
3217 4120 7.886629 TTAGTACCACCTCGTCTATATGTTT 57.113 36.000 0.00 0.00 0.00 2.83
3218 4121 9.750783 ATATTAGTACCACCTCGTCTATATGTT 57.249 33.333 0.00 0.00 0.00 2.71
3219 4122 9.750783 AATATTAGTACCACCTCGTCTATATGT 57.249 33.333 0.00 0.00 0.00 2.29
3221 4124 9.970553 TCAATATTAGTACCACCTCGTCTATAT 57.029 33.333 0.00 0.00 0.00 0.86
3222 4125 9.224267 GTCAATATTAGTACCACCTCGTCTATA 57.776 37.037 0.00 0.00 0.00 1.31
3223 4126 7.176340 GGTCAATATTAGTACCACCTCGTCTAT 59.824 40.741 8.29 0.00 32.04 1.98
3224 4127 6.488006 GGTCAATATTAGTACCACCTCGTCTA 59.512 42.308 8.29 0.00 32.04 2.59
3225 4128 5.301298 GGTCAATATTAGTACCACCTCGTCT 59.699 44.000 8.29 0.00 32.04 4.18
3226 4129 5.508657 GGGTCAATATTAGTACCACCTCGTC 60.509 48.000 13.10 0.00 33.46 4.20
3227 4130 4.343239 GGGTCAATATTAGTACCACCTCGT 59.657 45.833 13.10 0.00 33.46 4.18
3228 4131 4.342951 TGGGTCAATATTAGTACCACCTCG 59.657 45.833 13.10 0.00 33.46 4.63
3229 4132 5.365895 AGTGGGTCAATATTAGTACCACCTC 59.634 44.000 19.11 5.43 45.99 3.85
3230 4133 5.130477 CAGTGGGTCAATATTAGTACCACCT 59.870 44.000 19.11 10.47 45.99 4.00
3231 4134 5.365619 CAGTGGGTCAATATTAGTACCACC 58.634 45.833 19.11 9.03 45.99 4.61
3232 4135 4.814771 GCAGTGGGTCAATATTAGTACCAC 59.185 45.833 16.77 16.77 45.37 4.16
3233 4136 4.141574 GGCAGTGGGTCAATATTAGTACCA 60.142 45.833 13.10 6.30 33.46 3.25
3234 4137 4.141574 TGGCAGTGGGTCAATATTAGTACC 60.142 45.833 5.59 5.59 0.00 3.34
3235 4138 4.814771 GTGGCAGTGGGTCAATATTAGTAC 59.185 45.833 0.00 0.00 29.11 2.73
3236 4139 4.141574 GGTGGCAGTGGGTCAATATTAGTA 60.142 45.833 0.00 0.00 29.11 1.82
3237 4140 3.371595 GGTGGCAGTGGGTCAATATTAGT 60.372 47.826 0.00 0.00 29.11 2.24
3238 4141 3.214328 GGTGGCAGTGGGTCAATATTAG 58.786 50.000 0.00 0.00 29.11 1.73
3239 4142 2.092103 GGGTGGCAGTGGGTCAATATTA 60.092 50.000 0.00 0.00 29.11 0.98
3240 4143 1.341976 GGGTGGCAGTGGGTCAATATT 60.342 52.381 0.00 0.00 29.11 1.28
3241 4144 0.258774 GGGTGGCAGTGGGTCAATAT 59.741 55.000 0.00 0.00 29.11 1.28
3242 4145 1.688811 GGGTGGCAGTGGGTCAATA 59.311 57.895 0.00 0.00 29.11 1.90
3243 4146 2.440599 GGGTGGCAGTGGGTCAAT 59.559 61.111 0.00 0.00 29.11 2.57
3244 4147 4.263572 CGGGTGGCAGTGGGTCAA 62.264 66.667 0.00 0.00 29.11 3.18
3246 4149 2.798148 CTTACGGGTGGCAGTGGGTC 62.798 65.000 0.00 0.00 0.00 4.46
3247 4150 2.850130 TTACGGGTGGCAGTGGGT 60.850 61.111 0.00 0.00 0.00 4.51
3248 4151 1.546589 TACTTACGGGTGGCAGTGGG 61.547 60.000 0.00 0.00 0.00 4.61
3249 4152 0.322322 TTACTTACGGGTGGCAGTGG 59.678 55.000 0.00 0.00 0.00 4.00
3250 4153 2.172851 TTTACTTACGGGTGGCAGTG 57.827 50.000 0.00 0.00 0.00 3.66
3251 4154 2.934886 TTTTACTTACGGGTGGCAGT 57.065 45.000 0.00 0.00 0.00 4.40
3269 4172 3.429135 GGATCGACTCGCTAGGTCTTTTT 60.429 47.826 0.00 0.00 0.00 1.94
3270 4173 2.099427 GGATCGACTCGCTAGGTCTTTT 59.901 50.000 0.00 0.00 0.00 2.27
3271 4174 1.677052 GGATCGACTCGCTAGGTCTTT 59.323 52.381 0.00 0.00 0.00 2.52
3272 4175 1.310904 GGATCGACTCGCTAGGTCTT 58.689 55.000 0.00 0.00 0.00 3.01
3273 4176 0.535553 GGGATCGACTCGCTAGGTCT 60.536 60.000 0.00 0.00 34.11 3.85
3274 4177 1.517210 GGGGATCGACTCGCTAGGTC 61.517 65.000 0.00 0.00 37.03 3.85
3275 4178 1.528776 GGGGATCGACTCGCTAGGT 60.529 63.158 0.00 0.00 37.03 3.08
3276 4179 0.896019 ATGGGGATCGACTCGCTAGG 60.896 60.000 0.00 0.00 37.03 3.02
3277 4180 0.523966 GATGGGGATCGACTCGCTAG 59.476 60.000 0.00 0.00 37.03 3.42
3278 4181 0.110678 AGATGGGGATCGACTCGCTA 59.889 55.000 0.00 0.00 37.03 4.26
3279 4182 1.152652 AGATGGGGATCGACTCGCT 60.153 57.895 0.00 0.00 37.03 4.93
3280 4183 1.287503 GAGATGGGGATCGACTCGC 59.712 63.158 0.00 0.00 36.12 5.03
3281 4184 1.528292 GGGAGATGGGGATCGACTCG 61.528 65.000 0.00 0.00 0.00 4.18
3282 4185 0.178947 AGGGAGATGGGGATCGACTC 60.179 60.000 0.00 0.00 0.00 3.36
3283 4186 0.178947 GAGGGAGATGGGGATCGACT 60.179 60.000 0.00 0.00 0.00 4.18
3284 4187 0.178947 AGAGGGAGATGGGGATCGAC 60.179 60.000 0.00 0.00 0.00 4.20
3285 4188 0.113385 GAGAGGGAGATGGGGATCGA 59.887 60.000 0.00 0.00 0.00 3.59
3286 4189 0.114168 AGAGAGGGAGATGGGGATCG 59.886 60.000 0.00 0.00 0.00 3.69
3287 4190 1.552254 GGAGAGAGGGAGATGGGGATC 60.552 61.905 0.00 0.00 0.00 3.36
3288 4191 0.491371 GGAGAGAGGGAGATGGGGAT 59.509 60.000 0.00 0.00 0.00 3.85
3289 4192 1.669927 GGGAGAGAGGGAGATGGGGA 61.670 65.000 0.00 0.00 0.00 4.81
3290 4193 1.152139 GGGAGAGAGGGAGATGGGG 60.152 68.421 0.00 0.00 0.00 4.96
3291 4194 0.178935 GAGGGAGAGAGGGAGATGGG 60.179 65.000 0.00 0.00 0.00 4.00
3292 4195 0.539438 CGAGGGAGAGAGGGAGATGG 60.539 65.000 0.00 0.00 0.00 3.51
3293 4196 0.476338 TCGAGGGAGAGAGGGAGATG 59.524 60.000 0.00 0.00 0.00 2.90
3294 4197 1.354368 GATCGAGGGAGAGAGGGAGAT 59.646 57.143 0.00 0.00 0.00 2.75
3295 4198 0.768622 GATCGAGGGAGAGAGGGAGA 59.231 60.000 0.00 0.00 0.00 3.71
3296 4199 0.251165 GGATCGAGGGAGAGAGGGAG 60.251 65.000 0.00 0.00 0.00 4.30
3297 4200 1.721093 GGGATCGAGGGAGAGAGGGA 61.721 65.000 0.00 0.00 0.00 4.20
3298 4201 1.228737 GGGATCGAGGGAGAGAGGG 60.229 68.421 0.00 0.00 0.00 4.30
3299 4202 0.825840 GTGGGATCGAGGGAGAGAGG 60.826 65.000 0.00 0.00 0.00 3.69
3300 4203 0.106469 TGTGGGATCGAGGGAGAGAG 60.106 60.000 0.00 0.00 0.00 3.20
3301 4204 0.106469 CTGTGGGATCGAGGGAGAGA 60.106 60.000 0.00 0.00 0.00 3.10
3302 4205 1.112315 CCTGTGGGATCGAGGGAGAG 61.112 65.000 0.00 0.00 33.58 3.20
3303 4206 1.075970 CCTGTGGGATCGAGGGAGA 60.076 63.158 0.00 0.00 33.58 3.71
3304 4207 1.381872 ACCTGTGGGATCGAGGGAG 60.382 63.158 0.00 0.00 36.25 4.30
3305 4208 1.381327 GACCTGTGGGATCGAGGGA 60.381 63.158 0.00 0.00 36.25 4.20
3306 4209 2.786495 CGACCTGTGGGATCGAGGG 61.786 68.421 0.00 0.00 37.90 4.30
3307 4210 2.808315 CGACCTGTGGGATCGAGG 59.192 66.667 0.00 0.00 37.90 4.63
3308 4211 2.105128 GCGACCTGTGGGATCGAG 59.895 66.667 0.00 0.00 37.90 4.04
3309 4212 3.822192 CGCGACCTGTGGGATCGA 61.822 66.667 0.00 0.00 37.90 3.59
3310 4213 2.767445 TACGCGACCTGTGGGATCG 61.767 63.158 15.93 0.00 38.34 3.69
3311 4214 1.226888 GTACGCGACCTGTGGGATC 60.227 63.158 15.93 0.00 36.25 3.36
3312 4215 2.890371 GTACGCGACCTGTGGGAT 59.110 61.111 15.93 0.00 36.25 3.85
3313 4216 3.740397 CGTACGCGACCTGTGGGA 61.740 66.667 15.93 0.00 41.33 4.37
3314 4217 3.740397 TCGTACGCGACCTGTGGG 61.740 66.667 15.93 0.00 42.81 4.61
3325 4228 1.637402 GAGAGAGGAGCGTCGTACG 59.363 63.158 9.53 9.53 45.88 3.67
3326 4229 1.438562 GGGAGAGAGGAGCGTCGTAC 61.439 65.000 0.00 0.00 0.00 3.67
3327 4230 1.153208 GGGAGAGAGGAGCGTCGTA 60.153 63.158 0.00 0.00 0.00 3.43
3328 4231 2.438795 GGGAGAGAGGAGCGTCGT 60.439 66.667 0.00 0.00 0.00 4.34
3329 4232 2.124487 AGGGAGAGAGGAGCGTCG 60.124 66.667 0.00 0.00 0.00 5.12
3330 4233 1.077357 TGAGGGAGAGAGGAGCGTC 60.077 63.158 0.00 0.00 0.00 5.19
3331 4234 1.379309 GTGAGGGAGAGAGGAGCGT 60.379 63.158 0.00 0.00 0.00 5.07
3332 4235 2.124693 GGTGAGGGAGAGAGGAGCG 61.125 68.421 0.00 0.00 0.00 5.03
3333 4236 1.760480 GGGTGAGGGAGAGAGGAGC 60.760 68.421 0.00 0.00 0.00 4.70
3334 4237 1.075600 GGGGTGAGGGAGAGAGGAG 60.076 68.421 0.00 0.00 0.00 3.69
3335 4238 1.156322 AAGGGGTGAGGGAGAGAGGA 61.156 60.000 0.00 0.00 0.00 3.71
3336 4239 0.689412 GAAGGGGTGAGGGAGAGAGG 60.689 65.000 0.00 0.00 0.00 3.69
3337 4240 0.338120 AGAAGGGGTGAGGGAGAGAG 59.662 60.000 0.00 0.00 0.00 3.20
3338 4241 0.041833 CAGAAGGGGTGAGGGAGAGA 59.958 60.000 0.00 0.00 0.00 3.10
3339 4242 0.252467 ACAGAAGGGGTGAGGGAGAG 60.252 60.000 0.00 0.00 0.00 3.20
3340 4243 0.545309 CACAGAAGGGGTGAGGGAGA 60.545 60.000 0.00 0.00 38.54 3.71
3341 4244 1.986413 CACAGAAGGGGTGAGGGAG 59.014 63.158 0.00 0.00 38.54 4.30
3342 4245 2.224159 GCACAGAAGGGGTGAGGGA 61.224 63.158 0.00 0.00 38.54 4.20
3343 4246 2.352805 GCACAGAAGGGGTGAGGG 59.647 66.667 0.00 0.00 38.54 4.30
3344 4247 1.302832 GTGCACAGAAGGGGTGAGG 60.303 63.158 13.17 0.00 38.54 3.86
3345 4248 1.302832 GGTGCACAGAAGGGGTGAG 60.303 63.158 20.43 0.00 38.54 3.51
3346 4249 2.075566 TGGTGCACAGAAGGGGTGA 61.076 57.895 20.43 0.00 38.54 4.02
3347 4250 1.898574 GTGGTGCACAGAAGGGGTG 60.899 63.158 20.43 0.00 39.25 4.61
3348 4251 2.515901 GTGGTGCACAGAAGGGGT 59.484 61.111 20.43 0.00 34.08 4.95
3349 4252 2.282462 GGTGGTGCACAGAAGGGG 60.282 66.667 20.43 0.00 35.86 4.79
3350 4253 2.669569 CGGTGGTGCACAGAAGGG 60.670 66.667 20.43 0.00 35.86 3.95
3351 4254 2.669569 CCGGTGGTGCACAGAAGG 60.670 66.667 20.43 12.40 35.86 3.46
3352 4255 3.357079 GCCGGTGGTGCACAGAAG 61.357 66.667 20.43 6.90 35.86 2.85
3353 4256 4.947147 GGCCGGTGGTGCACAGAA 62.947 66.667 20.43 0.00 35.86 3.02
3378 4281 2.295349 GACAGATAATGCTTGCCATGGG 59.705 50.000 15.13 0.00 33.49 4.00
3379 4282 2.031420 CGACAGATAATGCTTGCCATGG 60.031 50.000 7.63 7.63 33.49 3.66
3380 4283 2.615447 ACGACAGATAATGCTTGCCATG 59.385 45.455 0.00 0.00 33.49 3.66
3381 4284 2.615447 CACGACAGATAATGCTTGCCAT 59.385 45.455 0.00 0.00 35.06 4.40
3382 4285 2.009051 CACGACAGATAATGCTTGCCA 58.991 47.619 0.00 0.00 0.00 4.92
3383 4286 1.331756 CCACGACAGATAATGCTTGCC 59.668 52.381 0.00 0.00 0.00 4.52
3384 4287 2.009774 ACCACGACAGATAATGCTTGC 58.990 47.619 0.00 0.00 0.00 4.01
3385 4288 3.935203 AGAACCACGACAGATAATGCTTG 59.065 43.478 0.00 0.00 0.00 4.01
3386 4289 4.207891 AGAACCACGACAGATAATGCTT 57.792 40.909 0.00 0.00 0.00 3.91
3387 4290 3.895232 AGAACCACGACAGATAATGCT 57.105 42.857 0.00 0.00 0.00 3.79
3388 4291 5.109903 AGTTAGAACCACGACAGATAATGC 58.890 41.667 0.00 0.00 0.00 3.56
3389 4292 6.473778 CAGAGTTAGAACCACGACAGATAATG 59.526 42.308 0.00 0.00 0.00 1.90
3390 4293 6.377429 TCAGAGTTAGAACCACGACAGATAAT 59.623 38.462 0.00 0.00 0.00 1.28
3391 4294 5.708697 TCAGAGTTAGAACCACGACAGATAA 59.291 40.000 0.00 0.00 0.00 1.75
3392 4295 5.123502 GTCAGAGTTAGAACCACGACAGATA 59.876 44.000 0.00 0.00 0.00 1.98
3509 4413 2.094854 CGAGACGTAGGGCTGTTACTTT 60.095 50.000 0.00 0.00 0.00 2.66
3826 4732 1.272816 TGGAGGTATCCCACTCGACAA 60.273 52.381 0.00 0.00 46.04 3.18
3990 4896 7.107639 TCATATAACATGAAGAACCAGTCGA 57.892 36.000 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.