Multiple sequence alignment - TraesCS7A01G469700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G469700 chr7A 100.000 3157 0 0 1 3157 666179487 666182643 0.000000e+00 5830.0
1 TraesCS7A01G469700 chr7A 86.986 1483 182 7 893 2372 665974374 665975848 0.000000e+00 1659.0
2 TraesCS7A01G469700 chr7A 98.492 398 6 0 287 684 560301252 560300855 0.000000e+00 702.0
3 TraesCS7A01G469700 chr7A 79.752 242 44 3 49 286 665973453 665973693 1.510000e-38 171.0
4 TraesCS7A01G469700 chr7B 89.960 1484 143 4 682 2164 637588829 637590307 0.000000e+00 1910.0
5 TraesCS7A01G469700 chr7B 88.829 1486 157 8 682 2164 637494744 637496223 0.000000e+00 1816.0
6 TraesCS7A01G469700 chr7B 87.241 1544 180 10 837 2372 637363646 637365180 0.000000e+00 1744.0
7 TraesCS7A01G469700 chr7B 87.332 1484 175 8 893 2372 637614414 637615888 0.000000e+00 1687.0
8 TraesCS7A01G469700 chr7B 86.250 240 22 3 48 286 637494519 637494748 1.880000e-62 250.0
9 TraesCS7A01G469700 chr7B 77.824 239 51 2 49 286 637613058 637613295 2.540000e-31 147.0
10 TraesCS7A01G469700 chr7B 86.047 86 11 1 2281 2365 637590428 637590513 1.210000e-14 91.6
11 TraesCS7A01G469700 chr7D 87.769 1439 163 7 940 2375 575596128 575597556 0.000000e+00 1670.0
12 TraesCS7A01G469700 chr7D 96.452 930 29 4 682 1610 575667163 575668089 0.000000e+00 1531.0
13 TraesCS7A01G469700 chr7D 92.014 576 33 4 2369 2937 575676131 575676700 0.000000e+00 797.0
14 TraesCS7A01G469700 chr7D 98.496 399 6 0 286 684 614367314 614366916 0.000000e+00 704.0
15 TraesCS7A01G469700 chr7D 95.455 286 12 1 1 286 575666883 575667167 3.710000e-124 455.0
16 TraesCS7A01G469700 chr7D 94.483 290 13 2 2086 2372 575675798 575676087 8.030000e-121 444.0
17 TraesCS7A01G469700 chr7D 94.419 215 11 1 2923 3136 575678430 575678644 2.350000e-86 329.0
18 TraesCS7A01G469700 chr7D 99.329 149 1 0 1630 1778 575675635 575675783 1.440000e-68 270.0
19 TraesCS7A01G469700 chr7D 79.424 243 47 3 46 286 575595236 575595477 5.420000e-38 169.0
20 TraesCS7A01G469700 chr6A 98.000 400 7 1 286 684 549053109 549052710 0.000000e+00 693.0
21 TraesCS7A01G469700 chr6A 75.000 772 172 20 1241 2001 6717848 6718609 1.400000e-88 337.0
22 TraesCS7A01G469700 chr2A 96.734 398 11 2 287 684 684419406 684419011 0.000000e+00 662.0
23 TraesCS7A01G469700 chr2A 83.616 354 56 2 1019 1371 695473222 695472870 6.530000e-87 331.0
24 TraesCS7A01G469700 chr2B 94.162 394 21 2 292 684 686052798 686052406 1.620000e-167 599.0
25 TraesCS7A01G469700 chr2B 88.279 401 46 1 285 684 474448320 474447920 2.200000e-131 479.0
26 TraesCS7A01G469700 chr3D 88.750 400 44 1 286 684 20902644 20902245 3.660000e-134 488.0
27 TraesCS7A01G469700 chr1D 88.366 404 45 2 280 681 482918728 482919131 4.730000e-133 484.0
28 TraesCS7A01G469700 chr5B 88.471 399 45 1 287 684 546418770 546418372 6.120000e-132 481.0
29 TraesCS7A01G469700 chr2D 83.660 459 60 9 921 1365 556053130 556052673 4.870000e-113 418.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G469700 chr7A 666179487 666182643 3156 False 5830.0 5830 100.00000 1 3157 1 chr7A.!!$F1 3156
1 TraesCS7A01G469700 chr7A 665973453 665975848 2395 False 915.0 1659 83.36900 49 2372 2 chr7A.!!$F2 2323
2 TraesCS7A01G469700 chr7B 637363646 637365180 1534 False 1744.0 1744 87.24100 837 2372 1 chr7B.!!$F1 1535
3 TraesCS7A01G469700 chr7B 637494519 637496223 1704 False 1033.0 1816 87.53950 48 2164 2 chr7B.!!$F2 2116
4 TraesCS7A01G469700 chr7B 637588829 637590513 1684 False 1000.8 1910 88.00350 682 2365 2 chr7B.!!$F3 1683
5 TraesCS7A01G469700 chr7B 637613058 637615888 2830 False 917.0 1687 82.57800 49 2372 2 chr7B.!!$F4 2323
6 TraesCS7A01G469700 chr7D 575666883 575668089 1206 False 993.0 1531 95.95350 1 1610 2 chr7D.!!$F2 1609
7 TraesCS7A01G469700 chr7D 575595236 575597556 2320 False 919.5 1670 83.59650 46 2375 2 chr7D.!!$F1 2329
8 TraesCS7A01G469700 chr7D 575675635 575678644 3009 False 460.0 797 95.06125 1630 3136 4 chr7D.!!$F3 1506
9 TraesCS7A01G469700 chr6A 6717848 6718609 761 False 337.0 337 75.00000 1241 2001 1 chr6A.!!$F1 760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
623 627 0.031585 CCAGTCCTTGACGTTGTCGA 59.968 55.0 0.00 0.0 37.67 4.20 F
670 674 0.038166 TGGTCAAGCCCATCCAAGTC 59.962 55.0 0.00 0.0 36.04 3.01 F
671 675 0.329596 GGTCAAGCCCATCCAAGTCT 59.670 55.0 0.00 0.0 0.00 3.24 F
1610 2539 0.381801 AAGTTGCTGACTTTGGTGCG 59.618 50.0 0.94 0.0 46.34 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1899 2830 0.319900 GCGAGAGAGGCAACACTGAA 60.320 55.000 0.00 0.00 37.77 3.02 R
1913 2844 0.811915 GTAGGCACTTCTCTGCGAGA 59.188 55.000 4.47 4.47 41.75 4.04 R
1924 2855 1.480954 CACCTTGGATACGTAGGCACT 59.519 52.381 0.08 0.00 42.99 4.40 R
3109 5870 0.036732 TCCTCACATTCAGGCCACAC 59.963 55.000 5.01 0.00 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.207791 AGACATGCTTCTACCCAGGG 58.792 55.000 2.85 2.85 0.00 4.45
139 143 4.759693 TGGGTTTGACAGTGTGATGTATTC 59.240 41.667 0.00 0.00 32.25 1.75
209 213 0.250467 ACTTTGCCTGCGTCAGTGAT 60.250 50.000 0.00 0.00 0.00 3.06
218 222 0.389037 GCGTCAGTGATCACAGCTCA 60.389 55.000 27.02 1.28 0.00 4.26
237 241 0.172803 ATGCTTCGACACCTCGTACC 59.827 55.000 0.00 0.00 41.02 3.34
261 265 1.002468 CTGGTTATACATGCGCTTGCC 60.002 52.381 21.93 14.89 38.03 4.52
283 287 3.848353 ATGGGTACATGGGCAATCC 57.152 52.632 0.00 0.00 35.57 3.01
284 288 0.178992 ATGGGTACATGGGCAATCCG 60.179 55.000 0.00 0.00 38.76 4.18
285 289 1.226262 GGGTACATGGGCAATCCGT 59.774 57.895 0.00 0.00 38.76 4.69
286 290 0.395173 GGGTACATGGGCAATCCGTT 60.395 55.000 0.00 0.00 38.76 4.44
287 291 1.470051 GGTACATGGGCAATCCGTTT 58.530 50.000 0.00 0.00 38.76 3.60
288 292 1.822371 GGTACATGGGCAATCCGTTTT 59.178 47.619 0.00 0.00 38.76 2.43
289 293 2.232696 GGTACATGGGCAATCCGTTTTT 59.767 45.455 0.00 0.00 38.76 1.94
309 313 3.505464 TTTTTCGAAACGGAGGCAAAA 57.495 38.095 10.79 0.00 0.00 2.44
310 314 2.766970 TTTCGAAACGGAGGCAAAAG 57.233 45.000 6.47 0.00 0.00 2.27
311 315 0.309612 TTCGAAACGGAGGCAAAAGC 59.690 50.000 0.00 0.00 0.00 3.51
312 316 0.534203 TCGAAACGGAGGCAAAAGCT 60.534 50.000 0.00 0.00 0.00 3.74
313 317 0.310854 CGAAACGGAGGCAAAAGCTT 59.689 50.000 0.00 0.00 0.00 3.74
314 318 1.269051 CGAAACGGAGGCAAAAGCTTT 60.269 47.619 5.69 5.69 0.00 3.51
315 319 2.127251 GAAACGGAGGCAAAAGCTTTG 58.873 47.619 13.54 8.26 0.00 2.77
316 320 0.249447 AACGGAGGCAAAAGCTTTGC 60.249 50.000 13.54 17.13 44.22 3.68
323 327 2.738013 GCAAAAGCTTTGCCTCATCT 57.262 45.000 13.54 0.00 39.38 2.90
324 328 2.603953 GCAAAAGCTTTGCCTCATCTC 58.396 47.619 13.54 0.00 39.38 2.75
325 329 2.029649 GCAAAAGCTTTGCCTCATCTCA 60.030 45.455 13.54 0.00 39.38 3.27
326 330 3.368116 GCAAAAGCTTTGCCTCATCTCAT 60.368 43.478 13.54 0.00 39.38 2.90
327 331 4.817517 CAAAAGCTTTGCCTCATCTCATT 58.182 39.130 13.54 0.00 0.00 2.57
328 332 5.622914 GCAAAAGCTTTGCCTCATCTCATTA 60.623 40.000 13.54 0.00 39.38 1.90
329 333 6.392354 CAAAAGCTTTGCCTCATCTCATTAA 58.608 36.000 13.54 0.00 0.00 1.40
330 334 6.786967 AAAGCTTTGCCTCATCTCATTAAT 57.213 33.333 11.80 0.00 0.00 1.40
331 335 6.786967 AAGCTTTGCCTCATCTCATTAATT 57.213 33.333 0.00 0.00 0.00 1.40
332 336 7.886629 AAGCTTTGCCTCATCTCATTAATTA 57.113 32.000 0.00 0.00 0.00 1.40
333 337 7.886629 AGCTTTGCCTCATCTCATTAATTAA 57.113 32.000 0.00 0.00 0.00 1.40
334 338 7.938715 AGCTTTGCCTCATCTCATTAATTAAG 58.061 34.615 3.94 0.00 0.00 1.85
335 339 7.776969 AGCTTTGCCTCATCTCATTAATTAAGA 59.223 33.333 3.94 0.00 0.00 2.10
336 340 8.408601 GCTTTGCCTCATCTCATTAATTAAGAA 58.591 33.333 3.94 0.00 0.00 2.52
337 341 9.947669 CTTTGCCTCATCTCATTAATTAAGAAG 57.052 33.333 3.94 4.04 0.00 2.85
338 342 9.685276 TTTGCCTCATCTCATTAATTAAGAAGA 57.315 29.630 12.30 12.30 0.00 2.87
339 343 8.899427 TGCCTCATCTCATTAATTAAGAAGAG 57.101 34.615 16.17 16.17 35.61 2.85
340 344 8.489489 TGCCTCATCTCATTAATTAAGAAGAGT 58.511 33.333 19.02 8.41 34.60 3.24
341 345 9.336171 GCCTCATCTCATTAATTAAGAAGAGTT 57.664 33.333 19.02 11.08 34.60 3.01
357 361 7.133891 AGAAGAGTTTTGAAATACATGACCG 57.866 36.000 0.00 0.00 0.00 4.79
358 362 6.934645 AGAAGAGTTTTGAAATACATGACCGA 59.065 34.615 0.00 0.00 0.00 4.69
359 363 6.481954 AGAGTTTTGAAATACATGACCGAC 57.518 37.500 0.00 0.00 0.00 4.79
360 364 5.411669 AGAGTTTTGAAATACATGACCGACC 59.588 40.000 0.00 0.00 0.00 4.79
361 365 4.153475 AGTTTTGAAATACATGACCGACCG 59.847 41.667 0.00 0.00 0.00 4.79
362 366 3.322211 TTGAAATACATGACCGACCGT 57.678 42.857 0.00 0.00 0.00 4.83
363 367 2.883574 TGAAATACATGACCGACCGTC 58.116 47.619 0.00 0.00 42.33 4.79
364 368 2.199236 GAAATACATGACCGACCGTCC 58.801 52.381 0.00 0.00 41.18 4.79
365 369 1.187974 AATACATGACCGACCGTCCA 58.812 50.000 0.00 0.00 41.18 4.02
366 370 1.410004 ATACATGACCGACCGTCCAT 58.590 50.000 0.00 0.00 41.18 3.41
367 371 0.458260 TACATGACCGACCGTCCATG 59.542 55.000 0.00 12.23 41.18 3.66
368 372 1.521457 CATGACCGACCGTCCATGG 60.521 63.158 4.97 4.97 41.18 3.66
369 373 1.684391 ATGACCGACCGTCCATGGA 60.684 57.895 11.44 11.44 41.18 3.41
370 374 1.956629 ATGACCGACCGTCCATGGAC 61.957 60.000 31.59 31.59 41.18 4.02
378 382 2.668632 GTCCATGGACGGCCTCAA 59.331 61.111 28.52 0.00 35.30 3.02
379 383 1.224592 GTCCATGGACGGCCTCAAT 59.775 57.895 28.52 0.00 35.30 2.57
380 384 0.394352 GTCCATGGACGGCCTCAATT 60.394 55.000 28.52 0.00 35.30 2.32
381 385 0.107214 TCCATGGACGGCCTCAATTC 60.107 55.000 11.44 0.00 34.31 2.17
382 386 1.439353 CCATGGACGGCCTCAATTCG 61.439 60.000 9.82 0.00 34.31 3.34
383 387 0.461870 CATGGACGGCCTCAATTCGA 60.462 55.000 9.82 0.00 34.31 3.71
384 388 0.251916 ATGGACGGCCTCAATTCGAA 59.748 50.000 9.82 0.00 34.31 3.71
385 389 0.035598 TGGACGGCCTCAATTCGAAA 59.964 50.000 9.82 0.00 34.31 3.46
386 390 0.727398 GGACGGCCTCAATTCGAAAG 59.273 55.000 0.00 0.00 0.00 2.62
387 391 1.439679 GACGGCCTCAATTCGAAAGT 58.560 50.000 0.00 0.00 0.00 2.66
388 392 1.393883 GACGGCCTCAATTCGAAAGTC 59.606 52.381 0.00 0.00 0.00 3.01
389 393 1.002087 ACGGCCTCAATTCGAAAGTCT 59.998 47.619 0.00 0.00 0.00 3.24
390 394 2.232941 ACGGCCTCAATTCGAAAGTCTA 59.767 45.455 0.00 0.00 0.00 2.59
391 395 2.603560 CGGCCTCAATTCGAAAGTCTAC 59.396 50.000 0.00 0.00 0.00 2.59
392 396 3.676324 CGGCCTCAATTCGAAAGTCTACT 60.676 47.826 0.00 0.00 0.00 2.57
393 397 3.866327 GGCCTCAATTCGAAAGTCTACTC 59.134 47.826 0.00 0.00 0.00 2.59
394 398 4.382147 GGCCTCAATTCGAAAGTCTACTCT 60.382 45.833 0.00 0.00 0.00 3.24
395 399 4.801516 GCCTCAATTCGAAAGTCTACTCTC 59.198 45.833 0.00 0.00 0.00 3.20
396 400 5.031578 CCTCAATTCGAAAGTCTACTCTCG 58.968 45.833 0.00 0.00 0.00 4.04
397 401 4.413087 TCAATTCGAAAGTCTACTCTCGC 58.587 43.478 0.00 0.00 0.00 5.03
398 402 2.522372 TTCGAAAGTCTACTCTCGCG 57.478 50.000 0.00 0.00 0.00 5.87
399 403 0.725686 TCGAAAGTCTACTCTCGCGG 59.274 55.000 6.13 0.00 0.00 6.46
400 404 0.447011 CGAAAGTCTACTCTCGCGGT 59.553 55.000 6.13 0.00 0.00 5.68
401 405 1.662629 CGAAAGTCTACTCTCGCGGTA 59.337 52.381 6.13 0.00 0.00 4.02
402 406 2.287373 CGAAAGTCTACTCTCGCGGTAT 59.713 50.000 6.13 0.00 0.00 2.73
403 407 3.492383 CGAAAGTCTACTCTCGCGGTATA 59.508 47.826 6.13 0.00 0.00 1.47
404 408 4.025396 CGAAAGTCTACTCTCGCGGTATAA 60.025 45.833 6.13 0.00 0.00 0.98
405 409 5.421212 AAAGTCTACTCTCGCGGTATAAG 57.579 43.478 6.13 0.00 0.00 1.73
406 410 4.333913 AGTCTACTCTCGCGGTATAAGA 57.666 45.455 6.13 0.00 0.00 2.10
407 411 4.309099 AGTCTACTCTCGCGGTATAAGAG 58.691 47.826 17.39 17.39 41.84 2.85
408 412 4.039004 AGTCTACTCTCGCGGTATAAGAGA 59.961 45.833 23.71 9.58 39.09 3.10
409 413 4.749099 GTCTACTCTCGCGGTATAAGAGAA 59.251 45.833 23.71 9.44 40.09 2.87
410 414 3.967203 ACTCTCGCGGTATAAGAGAAC 57.033 47.619 23.71 0.00 40.09 3.01
411 415 3.543665 ACTCTCGCGGTATAAGAGAACT 58.456 45.455 23.71 3.72 40.09 3.01
412 416 3.560896 ACTCTCGCGGTATAAGAGAACTC 59.439 47.826 23.71 0.00 40.09 3.01
413 417 3.538591 TCTCGCGGTATAAGAGAACTCA 58.461 45.455 6.13 0.00 38.00 3.41
414 418 3.943381 TCTCGCGGTATAAGAGAACTCAA 59.057 43.478 6.13 0.00 38.00 3.02
415 419 4.397103 TCTCGCGGTATAAGAGAACTCAAA 59.603 41.667 6.13 0.00 38.00 2.69
416 420 5.067413 TCTCGCGGTATAAGAGAACTCAAAT 59.933 40.000 6.13 0.47 38.00 2.32
417 421 5.041287 TCGCGGTATAAGAGAACTCAAATG 58.959 41.667 6.13 0.00 0.00 2.32
418 422 4.318121 CGCGGTATAAGAGAACTCAAATGC 60.318 45.833 0.00 1.47 0.00 3.56
419 423 4.811557 GCGGTATAAGAGAACTCAAATGCT 59.188 41.667 4.64 0.00 0.00 3.79
420 424 5.294552 GCGGTATAAGAGAACTCAAATGCTT 59.705 40.000 4.64 0.00 0.00 3.91
421 425 6.709643 CGGTATAAGAGAACTCAAATGCTTG 58.290 40.000 4.64 0.00 0.00 4.01
422 426 6.238211 CGGTATAAGAGAACTCAAATGCTTGG 60.238 42.308 4.64 0.00 33.01 3.61
423 427 3.930634 AAGAGAACTCAAATGCTTGGC 57.069 42.857 4.64 0.00 33.01 4.52
424 428 2.165998 AGAGAACTCAAATGCTTGGCC 58.834 47.619 0.00 0.00 33.01 5.36
425 429 1.203287 GAGAACTCAAATGCTTGGCCC 59.797 52.381 0.00 0.00 33.01 5.80
426 430 0.247460 GAACTCAAATGCTTGGCCCC 59.753 55.000 0.00 0.00 33.01 5.80
427 431 1.194121 AACTCAAATGCTTGGCCCCC 61.194 55.000 0.00 0.00 33.01 5.40
428 432 2.679642 TCAAATGCTTGGCCCCCG 60.680 61.111 0.00 0.00 33.01 5.73
429 433 4.455906 CAAATGCTTGGCCCCCGC 62.456 66.667 0.00 0.00 0.00 6.13
444 448 4.994756 CGCCAACCCCCAAAGCCT 62.995 66.667 0.00 0.00 0.00 4.58
445 449 3.313524 GCCAACCCCCAAAGCCTG 61.314 66.667 0.00 0.00 0.00 4.85
446 450 2.604382 CCAACCCCCAAAGCCTGG 60.604 66.667 0.00 0.00 45.97 4.45
447 451 3.313524 CAACCCCCAAAGCCTGGC 61.314 66.667 11.65 11.65 44.90 4.85
448 452 3.521452 AACCCCCAAAGCCTGGCT 61.521 61.111 17.22 17.22 44.90 4.75
456 460 3.161557 AAGCCTGGCTTCGGTCTT 58.838 55.556 27.70 4.35 46.77 3.01
457 461 2.372852 AAGCCTGGCTTCGGTCTTA 58.627 52.632 27.70 0.00 46.77 2.10
458 462 0.690762 AAGCCTGGCTTCGGTCTTAA 59.309 50.000 27.70 0.00 46.77 1.85
459 463 0.912486 AGCCTGGCTTCGGTCTTAAT 59.088 50.000 17.22 0.00 33.89 1.40
460 464 1.282157 AGCCTGGCTTCGGTCTTAATT 59.718 47.619 17.22 0.00 33.89 1.40
461 465 1.671328 GCCTGGCTTCGGTCTTAATTC 59.329 52.381 12.43 0.00 0.00 2.17
462 466 2.681097 GCCTGGCTTCGGTCTTAATTCT 60.681 50.000 12.43 0.00 0.00 2.40
463 467 3.431766 GCCTGGCTTCGGTCTTAATTCTA 60.432 47.826 12.43 0.00 0.00 2.10
464 468 4.372656 CCTGGCTTCGGTCTTAATTCTAG 58.627 47.826 0.00 0.00 0.00 2.43
465 469 4.099573 CCTGGCTTCGGTCTTAATTCTAGA 59.900 45.833 0.00 0.00 0.00 2.43
466 470 5.221541 CCTGGCTTCGGTCTTAATTCTAGAT 60.222 44.000 0.00 0.00 0.00 1.98
467 471 5.601662 TGGCTTCGGTCTTAATTCTAGATG 58.398 41.667 0.00 0.00 0.00 2.90
468 472 5.128827 TGGCTTCGGTCTTAATTCTAGATGT 59.871 40.000 0.00 0.00 0.00 3.06
469 473 5.463724 GGCTTCGGTCTTAATTCTAGATGTG 59.536 44.000 0.00 0.00 0.00 3.21
470 474 6.273825 GCTTCGGTCTTAATTCTAGATGTGA 58.726 40.000 0.00 0.00 0.00 3.58
471 475 6.926272 GCTTCGGTCTTAATTCTAGATGTGAT 59.074 38.462 0.00 0.00 0.00 3.06
472 476 7.439655 GCTTCGGTCTTAATTCTAGATGTGATT 59.560 37.037 0.00 0.00 0.00 2.57
473 477 9.967346 CTTCGGTCTTAATTCTAGATGTGATTA 57.033 33.333 0.00 0.00 0.00 1.75
474 478 9.745880 TTCGGTCTTAATTCTAGATGTGATTAC 57.254 33.333 0.00 0.00 0.00 1.89
475 479 8.909923 TCGGTCTTAATTCTAGATGTGATTACA 58.090 33.333 0.00 0.00 41.89 2.41
488 492 4.654915 TGTGATTACATATGGCATGGAGG 58.345 43.478 10.98 0.00 0.00 4.30
489 493 4.350520 TGTGATTACATATGGCATGGAGGA 59.649 41.667 10.98 0.00 0.00 3.71
490 494 4.697352 GTGATTACATATGGCATGGAGGAC 59.303 45.833 10.98 0.00 0.00 3.85
491 495 4.350520 TGATTACATATGGCATGGAGGACA 59.649 41.667 10.98 0.00 0.00 4.02
492 496 2.645838 ACATATGGCATGGAGGACAC 57.354 50.000 10.98 0.00 0.00 3.67
493 497 1.845791 ACATATGGCATGGAGGACACA 59.154 47.619 10.98 0.00 0.00 3.72
494 498 2.444388 ACATATGGCATGGAGGACACAT 59.556 45.455 10.98 0.00 0.00 3.21
495 499 3.117398 ACATATGGCATGGAGGACACATT 60.117 43.478 10.98 0.00 0.00 2.71
496 500 2.062971 ATGGCATGGAGGACACATTC 57.937 50.000 0.00 0.00 0.00 2.67
497 501 0.034186 TGGCATGGAGGACACATTCC 60.034 55.000 0.00 0.00 46.33 3.01
509 513 3.927142 GGACACATTCCTAAACACTCTCG 59.073 47.826 0.00 0.00 41.95 4.04
510 514 3.326747 ACACATTCCTAAACACTCTCGC 58.673 45.455 0.00 0.00 0.00 5.03
511 515 2.345641 CACATTCCTAAACACTCTCGCG 59.654 50.000 0.00 0.00 0.00 5.87
512 516 2.029290 ACATTCCTAAACACTCTCGCGT 60.029 45.455 5.77 0.00 0.00 6.01
513 517 2.806608 TTCCTAAACACTCTCGCGTT 57.193 45.000 5.77 0.00 0.00 4.84
514 518 2.342910 TCCTAAACACTCTCGCGTTC 57.657 50.000 5.77 0.00 0.00 3.95
515 519 1.068055 TCCTAAACACTCTCGCGTTCC 60.068 52.381 5.77 0.00 0.00 3.62
516 520 0.982673 CTAAACACTCTCGCGTTCCG 59.017 55.000 5.77 0.00 38.61 4.30
527 531 3.632700 CGTTCCGCTCGTTCCAAA 58.367 55.556 0.00 0.00 0.00 3.28
528 532 2.159181 CGTTCCGCTCGTTCCAAAT 58.841 52.632 0.00 0.00 0.00 2.32
529 533 0.094730 CGTTCCGCTCGTTCCAAATC 59.905 55.000 0.00 0.00 0.00 2.17
530 534 1.439679 GTTCCGCTCGTTCCAAATCT 58.560 50.000 0.00 0.00 0.00 2.40
531 535 1.393883 GTTCCGCTCGTTCCAAATCTC 59.606 52.381 0.00 0.00 0.00 2.75
532 536 0.108329 TCCGCTCGTTCCAAATCTCC 60.108 55.000 0.00 0.00 0.00 3.71
533 537 1.090052 CCGCTCGTTCCAAATCTCCC 61.090 60.000 0.00 0.00 0.00 4.30
534 538 0.391130 CGCTCGTTCCAAATCTCCCA 60.391 55.000 0.00 0.00 0.00 4.37
535 539 1.743772 CGCTCGTTCCAAATCTCCCAT 60.744 52.381 0.00 0.00 0.00 4.00
536 540 1.672881 GCTCGTTCCAAATCTCCCATG 59.327 52.381 0.00 0.00 0.00 3.66
537 541 2.680805 GCTCGTTCCAAATCTCCCATGA 60.681 50.000 0.00 0.00 0.00 3.07
538 542 3.609853 CTCGTTCCAAATCTCCCATGAA 58.390 45.455 0.00 0.00 0.00 2.57
539 543 4.009675 CTCGTTCCAAATCTCCCATGAAA 58.990 43.478 0.00 0.00 0.00 2.69
540 544 3.756434 TCGTTCCAAATCTCCCATGAAAC 59.244 43.478 0.00 0.00 0.00 2.78
541 545 3.119495 CGTTCCAAATCTCCCATGAAACC 60.119 47.826 0.00 0.00 0.00 3.27
542 546 3.824001 TCCAAATCTCCCATGAAACCA 57.176 42.857 0.00 0.00 0.00 3.67
543 547 4.125124 TCCAAATCTCCCATGAAACCAA 57.875 40.909 0.00 0.00 0.00 3.67
544 548 3.831911 TCCAAATCTCCCATGAAACCAAC 59.168 43.478 0.00 0.00 0.00 3.77
545 549 3.577848 CCAAATCTCCCATGAAACCAACA 59.422 43.478 0.00 0.00 0.00 3.33
546 550 4.223477 CCAAATCTCCCATGAAACCAACAT 59.777 41.667 0.00 0.00 0.00 2.71
547 551 5.172934 CAAATCTCCCATGAAACCAACATG 58.827 41.667 0.00 0.00 42.99 3.21
548 552 3.805066 TCTCCCATGAAACCAACATGA 57.195 42.857 0.00 0.00 45.22 3.07
549 553 3.420893 TCTCCCATGAAACCAACATGAC 58.579 45.455 0.00 0.00 45.22 3.06
550 554 2.158559 TCCCATGAAACCAACATGACG 58.841 47.619 0.00 0.00 45.22 4.35
551 555 2.158559 CCCATGAAACCAACATGACGA 58.841 47.619 0.00 0.00 45.22 4.20
552 556 2.095263 CCCATGAAACCAACATGACGAC 60.095 50.000 0.00 0.00 45.22 4.34
553 557 2.551887 CCATGAAACCAACATGACGACA 59.448 45.455 0.00 0.00 45.22 4.35
554 558 3.365264 CCATGAAACCAACATGACGACAG 60.365 47.826 0.00 0.00 45.22 3.51
555 559 3.186702 TGAAACCAACATGACGACAGA 57.813 42.857 0.00 0.00 0.00 3.41
556 560 3.738982 TGAAACCAACATGACGACAGAT 58.261 40.909 0.00 0.00 0.00 2.90
557 561 3.498018 TGAAACCAACATGACGACAGATG 59.502 43.478 0.00 0.00 0.00 2.90
558 562 1.442769 ACCAACATGACGACAGATGC 58.557 50.000 0.00 0.00 0.00 3.91
559 563 0.371301 CCAACATGACGACAGATGCG 59.629 55.000 0.00 0.00 0.00 4.73
560 564 1.349234 CAACATGACGACAGATGCGA 58.651 50.000 0.00 0.00 0.00 5.10
561 565 1.322637 CAACATGACGACAGATGCGAG 59.677 52.381 0.00 0.00 0.00 5.03
562 566 0.179127 ACATGACGACAGATGCGAGG 60.179 55.000 0.00 0.00 0.00 4.63
563 567 1.227089 ATGACGACAGATGCGAGGC 60.227 57.895 0.00 0.00 0.00 4.70
564 568 2.583593 GACGACAGATGCGAGGCC 60.584 66.667 0.00 0.00 0.00 5.19
565 569 4.148825 ACGACAGATGCGAGGCCC 62.149 66.667 0.00 0.00 0.00 5.80
566 570 3.842923 CGACAGATGCGAGGCCCT 61.843 66.667 0.00 0.00 0.00 5.19
567 571 2.586792 GACAGATGCGAGGCCCTT 59.413 61.111 0.00 0.00 0.00 3.95
568 572 1.078143 GACAGATGCGAGGCCCTTT 60.078 57.895 0.00 0.00 0.00 3.11
569 573 1.078143 ACAGATGCGAGGCCCTTTC 60.078 57.895 0.00 0.00 0.00 2.62
570 574 1.222936 CAGATGCGAGGCCCTTTCT 59.777 57.895 0.00 0.00 0.00 2.52
571 575 0.813210 CAGATGCGAGGCCCTTTCTC 60.813 60.000 0.00 0.00 0.00 2.87
572 576 1.221840 GATGCGAGGCCCTTTCTCA 59.778 57.895 0.00 0.00 0.00 3.27
573 577 1.078143 ATGCGAGGCCCTTTCTCAC 60.078 57.895 0.00 0.00 0.00 3.51
574 578 1.841302 ATGCGAGGCCCTTTCTCACA 61.841 55.000 0.00 0.00 0.00 3.58
575 579 1.078143 GCGAGGCCCTTTCTCACAT 60.078 57.895 0.00 0.00 0.00 3.21
576 580 0.678048 GCGAGGCCCTTTCTCACATT 60.678 55.000 0.00 0.00 0.00 2.71
577 581 1.089920 CGAGGCCCTTTCTCACATTG 58.910 55.000 0.00 0.00 0.00 2.82
578 582 1.467920 GAGGCCCTTTCTCACATTGG 58.532 55.000 0.00 0.00 0.00 3.16
579 583 0.613012 AGGCCCTTTCTCACATTGGC 60.613 55.000 0.00 0.00 38.16 4.52
580 584 0.899717 GGCCCTTTCTCACATTGGCA 60.900 55.000 0.00 0.00 40.64 4.92
581 585 1.188863 GCCCTTTCTCACATTGGCAT 58.811 50.000 0.00 0.00 38.73 4.40
582 586 1.551883 GCCCTTTCTCACATTGGCATT 59.448 47.619 0.00 0.00 38.73 3.56
583 587 2.675889 GCCCTTTCTCACATTGGCATTG 60.676 50.000 7.78 7.78 38.73 2.82
584 588 2.827322 CCCTTTCTCACATTGGCATTGA 59.173 45.455 15.69 5.24 0.00 2.57
585 589 3.367703 CCCTTTCTCACATTGGCATTGAC 60.368 47.826 15.69 0.00 0.00 3.18
586 590 3.495193 CTTTCTCACATTGGCATTGACG 58.505 45.455 15.69 6.77 0.00 4.35
587 591 0.804364 TCTCACATTGGCATTGACGC 59.196 50.000 15.69 0.00 0.00 5.19
595 599 2.491152 GCATTGACGCCCACCATG 59.509 61.111 0.00 0.00 0.00 3.66
596 600 2.342650 GCATTGACGCCCACCATGT 61.343 57.895 0.00 0.00 0.00 3.21
597 601 1.507630 CATTGACGCCCACCATGTG 59.492 57.895 0.00 0.00 0.00 3.21
613 617 2.515398 TGGTGCCACCAGTCCTTG 59.485 61.111 13.83 0.00 44.79 3.61
614 618 2.075566 TGGTGCCACCAGTCCTTGA 61.076 57.895 13.83 0.00 44.79 3.02
615 619 1.600916 GGTGCCACCAGTCCTTGAC 60.601 63.158 9.55 0.00 38.42 3.18
616 620 1.961277 GTGCCACCAGTCCTTGACG 60.961 63.158 0.00 0.00 37.67 4.35
617 621 2.426023 GCCACCAGTCCTTGACGT 59.574 61.111 0.00 0.00 37.67 4.34
618 622 1.227853 GCCACCAGTCCTTGACGTT 60.228 57.895 0.00 0.00 37.67 3.99
619 623 1.507141 GCCACCAGTCCTTGACGTTG 61.507 60.000 0.00 0.00 37.67 4.10
620 624 0.179056 CCACCAGTCCTTGACGTTGT 60.179 55.000 0.00 0.00 37.67 3.32
621 625 1.217882 CACCAGTCCTTGACGTTGTC 58.782 55.000 0.00 0.00 37.67 3.18
622 626 0.249322 ACCAGTCCTTGACGTTGTCG 60.249 55.000 0.00 0.00 37.67 4.35
623 627 0.031585 CCAGTCCTTGACGTTGTCGA 59.968 55.000 0.00 0.00 37.67 4.20
624 628 1.537348 CCAGTCCTTGACGTTGTCGAA 60.537 52.381 0.00 0.00 37.67 3.71
625 629 1.787155 CAGTCCTTGACGTTGTCGAAG 59.213 52.381 0.00 0.00 37.67 3.79
626 630 0.507358 GTCCTTGACGTTGTCGAAGC 59.493 55.000 0.00 0.00 40.62 3.86
627 631 0.387929 TCCTTGACGTTGTCGAAGCT 59.612 50.000 0.00 0.00 40.62 3.74
628 632 0.508641 CCTTGACGTTGTCGAAGCTG 59.491 55.000 0.00 0.00 40.62 4.24
629 633 0.111089 CTTGACGTTGTCGAAGCTGC 60.111 55.000 0.00 0.00 40.62 5.25
630 634 0.529773 TTGACGTTGTCGAAGCTGCT 60.530 50.000 0.00 0.00 40.62 4.24
631 635 0.939577 TGACGTTGTCGAAGCTGCTC 60.940 55.000 1.00 0.00 40.62 4.26
632 636 1.618640 GACGTTGTCGAAGCTGCTCC 61.619 60.000 1.00 0.00 40.62 4.70
633 637 1.664649 CGTTGTCGAAGCTGCTCCA 60.665 57.895 1.00 0.00 39.71 3.86
634 638 1.621301 CGTTGTCGAAGCTGCTCCAG 61.621 60.000 1.00 0.00 39.71 3.86
635 639 0.601311 GTTGTCGAAGCTGCTCCAGT 60.601 55.000 1.00 0.00 33.43 4.00
636 640 0.319900 TTGTCGAAGCTGCTCCAGTC 60.320 55.000 1.00 0.00 33.43 3.51
637 641 1.803519 GTCGAAGCTGCTCCAGTCG 60.804 63.158 13.66 13.66 33.35 4.18
638 642 2.507992 CGAAGCTGCTCCAGTCGG 60.508 66.667 12.36 0.00 33.43 4.79
639 643 2.817396 GAAGCTGCTCCAGTCGGC 60.817 66.667 1.00 0.00 33.43 5.54
640 644 4.749310 AAGCTGCTCCAGTCGGCG 62.749 66.667 1.00 0.00 40.59 6.46
642 646 4.521062 GCTGCTCCAGTCGGCGAT 62.521 66.667 14.79 0.00 33.43 4.58
643 647 2.584418 CTGCTCCAGTCGGCGATG 60.584 66.667 14.79 12.32 0.00 3.84
644 648 3.362399 CTGCTCCAGTCGGCGATGT 62.362 63.158 14.79 0.00 0.00 3.06
645 649 2.583593 GCTCCAGTCGGCGATGTC 60.584 66.667 14.79 0.00 0.00 3.06
646 650 2.105128 CTCCAGTCGGCGATGTCC 59.895 66.667 14.79 0.00 0.00 4.02
647 651 2.678580 TCCAGTCGGCGATGTCCA 60.679 61.111 14.79 0.00 0.00 4.02
648 652 2.509336 CCAGTCGGCGATGTCCAC 60.509 66.667 14.79 0.00 0.00 4.02
649 653 2.261361 CAGTCGGCGATGTCCACA 59.739 61.111 14.79 0.00 0.00 4.17
650 654 1.153568 CAGTCGGCGATGTCCACAT 60.154 57.895 14.79 0.00 39.70 3.21
651 655 0.740868 CAGTCGGCGATGTCCACATT 60.741 55.000 14.79 0.00 36.57 2.71
652 656 0.740868 AGTCGGCGATGTCCACATTG 60.741 55.000 14.79 2.87 40.05 2.82
653 657 1.449423 TCGGCGATGTCCACATTGG 60.449 57.895 4.99 0.00 38.03 3.16
654 658 1.745115 CGGCGATGTCCACATTGGT 60.745 57.895 0.00 0.00 39.03 3.67
655 659 1.705337 CGGCGATGTCCACATTGGTC 61.705 60.000 0.00 0.00 39.03 4.02
656 660 0.676466 GGCGATGTCCACATTGGTCA 60.676 55.000 8.70 0.00 39.71 4.02
657 661 1.164411 GCGATGTCCACATTGGTCAA 58.836 50.000 8.70 0.00 38.92 3.18
658 662 1.131126 GCGATGTCCACATTGGTCAAG 59.869 52.381 8.70 0.00 38.92 3.02
659 663 1.131126 CGATGTCCACATTGGTCAAGC 59.869 52.381 0.00 0.00 38.92 4.01
660 664 1.474077 GATGTCCACATTGGTCAAGCC 59.526 52.381 0.00 0.00 38.92 4.35
661 665 0.539438 TGTCCACATTGGTCAAGCCC 60.539 55.000 0.00 0.00 39.03 5.19
662 666 0.539438 GTCCACATTGGTCAAGCCCA 60.539 55.000 0.00 0.00 39.03 5.36
663 667 0.409092 TCCACATTGGTCAAGCCCAT 59.591 50.000 0.00 0.00 39.03 4.00
664 668 0.819582 CCACATTGGTCAAGCCCATC 59.180 55.000 0.00 0.00 33.60 3.51
665 669 0.819582 CACATTGGTCAAGCCCATCC 59.180 55.000 0.00 0.00 33.60 3.51
666 670 0.409092 ACATTGGTCAAGCCCATCCA 59.591 50.000 0.00 0.00 33.60 3.41
667 671 1.203162 ACATTGGTCAAGCCCATCCAA 60.203 47.619 0.00 0.00 42.81 3.53
668 672 1.479323 CATTGGTCAAGCCCATCCAAG 59.521 52.381 0.00 0.00 42.09 3.61
669 673 0.482446 TTGGTCAAGCCCATCCAAGT 59.518 50.000 0.00 0.00 35.42 3.16
670 674 0.038166 TGGTCAAGCCCATCCAAGTC 59.962 55.000 0.00 0.00 36.04 3.01
671 675 0.329596 GGTCAAGCCCATCCAAGTCT 59.670 55.000 0.00 0.00 0.00 3.24
672 676 1.272147 GGTCAAGCCCATCCAAGTCTT 60.272 52.381 0.00 0.00 0.00 3.01
673 677 1.815003 GTCAAGCCCATCCAAGTCTTG 59.185 52.381 5.53 5.53 36.42 3.02
674 678 1.704628 TCAAGCCCATCCAAGTCTTGA 59.295 47.619 14.42 0.96 40.28 3.02
675 679 2.309755 TCAAGCCCATCCAAGTCTTGAT 59.690 45.455 14.42 3.29 38.43 2.57
676 680 2.686915 CAAGCCCATCCAAGTCTTGATC 59.313 50.000 14.42 0.00 37.03 2.92
677 681 2.203584 AGCCCATCCAAGTCTTGATCT 58.796 47.619 14.42 0.00 0.00 2.75
678 682 2.172293 AGCCCATCCAAGTCTTGATCTC 59.828 50.000 14.42 0.00 0.00 2.75
679 683 2.747799 GCCCATCCAAGTCTTGATCTCC 60.748 54.545 14.42 0.00 0.00 3.71
680 684 2.484417 CCCATCCAAGTCTTGATCTCCG 60.484 54.545 14.42 0.00 0.00 4.63
710 717 4.081030 CGCTGGCTGCTCACGTTG 62.081 66.667 14.58 0.00 40.11 4.10
734 743 6.259167 TGCGGTAATAATTGATTCACCTACAC 59.741 38.462 0.00 0.00 0.00 2.90
765 774 6.320494 TGTTTGCAGTTAATATTTCCGTGT 57.680 33.333 0.00 0.00 0.00 4.49
1035 1963 4.023279 CGTAGATGGAGAAGAGACATCCAG 60.023 50.000 0.00 0.00 45.89 3.86
1114 2042 7.643528 TTAATATTATCGAGTGAAGCTGCAG 57.356 36.000 10.11 10.11 0.00 4.41
1122 2050 1.024271 GTGAAGCTGCAGGTGAAACA 58.976 50.000 20.97 14.16 39.98 2.83
1610 2539 0.381801 AAGTTGCTGACTTTGGTGCG 59.618 50.000 0.94 0.00 46.34 5.34
1795 2726 3.857157 TTTTACTGGTGAGTCAGGCTT 57.143 42.857 0.00 0.00 38.98 4.35
1844 2775 1.684386 CGGAGATGCAGAAGAGGCCT 61.684 60.000 3.86 3.86 0.00 5.19
1899 2830 4.145052 AGAAGCAACCGAGGAAGAAATTT 58.855 39.130 0.00 0.00 0.00 1.82
1913 2844 5.221322 GGAAGAAATTTTCAGTGTTGCCTCT 60.221 40.000 11.53 0.00 0.00 3.69
1934 2865 1.213013 CGCAGAGAAGTGCCTACGT 59.787 57.895 0.00 0.00 40.62 3.57
2026 2957 2.477825 GATGTCATCCCATGTCACTCG 58.522 52.381 0.90 0.00 31.52 4.18
2037 2968 4.503910 CCATGTCACTCGAGAAAATGGTA 58.496 43.478 21.68 0.17 32.93 3.25
2068 2999 3.063725 GCTGATGTTTCATCTCACTCAGC 59.936 47.826 5.95 5.95 44.84 4.26
2141 3072 2.992543 GCGAGAGTTCATATCATCTGCC 59.007 50.000 0.00 0.00 0.00 4.85
2211 3171 7.361542 CCATTCCACTTATGTTTTCTGAGAGTG 60.362 40.741 0.00 0.00 34.38 3.51
2212 3172 6.419484 TCCACTTATGTTTTCTGAGAGTGA 57.581 37.500 0.00 0.00 36.12 3.41
2213 3173 6.459066 TCCACTTATGTTTTCTGAGAGTGAG 58.541 40.000 0.00 0.00 36.12 3.51
2214 3174 6.267699 TCCACTTATGTTTTCTGAGAGTGAGA 59.732 38.462 0.00 0.00 36.12 3.27
2215 3175 6.589523 CCACTTATGTTTTCTGAGAGTGAGAG 59.410 42.308 0.00 0.00 36.12 3.20
2216 3176 7.151308 CACTTATGTTTTCTGAGAGTGAGAGT 58.849 38.462 0.00 0.00 36.12 3.24
2286 3247 1.569003 CAGCGTGCGAATGTTGACA 59.431 52.632 0.00 0.00 0.00 3.58
2306 3267 3.278574 CACCTTGGCGGATTCTATTTGA 58.721 45.455 0.00 0.00 36.31 2.69
2365 3327 1.293498 GAGGTCACGCAGTCATGGT 59.707 57.895 0.00 0.00 41.61 3.55
2368 3330 1.005037 GTCACGCAGTCATGGTGGA 60.005 57.895 0.00 0.00 41.61 4.02
2377 3386 2.352651 CAGTCATGGTGGAATAAGTGCG 59.647 50.000 0.00 0.00 0.00 5.34
2543 3552 6.951062 TGTTTTCTACATCCACATGTTTGA 57.049 33.333 0.00 0.00 40.66 2.69
2547 3556 9.906660 GTTTTCTACATCCACATGTTTGATTAA 57.093 29.630 0.00 0.00 40.66 1.40
2574 3583 8.776680 TTCACTAAGTTTTTGAGCGAATTTAC 57.223 30.769 0.00 0.00 0.00 2.01
2612 3621 4.848562 AGACATGATTAATGCCATGCAG 57.151 40.909 14.12 0.00 43.65 4.41
2618 3627 5.595257 TGATTAATGCCATGCAGCTTAAA 57.405 34.783 0.00 0.00 43.65 1.52
2620 3629 5.127519 TGATTAATGCCATGCAGCTTAAACT 59.872 36.000 0.00 0.00 43.65 2.66
2634 3643 8.956426 TGCAGCTTAAACTTGTAAATATAAGCT 58.044 29.630 11.01 11.01 44.74 3.74
2712 3727 4.695455 GCTAGGATTGCAGTGTTCTGTAAA 59.305 41.667 3.30 0.00 45.97 2.01
2716 3731 4.321230 GGATTGCAGTGTTCTGTAAAAGGG 60.321 45.833 3.30 0.00 45.97 3.95
2765 3780 4.266265 GTCAGTATAACGTTAAAGCGACCC 59.734 45.833 12.81 0.00 35.59 4.46
2786 3801 4.383335 CCCGGCAATGGTCTAAACTTAGTA 60.383 45.833 0.00 0.00 32.61 1.82
2855 3870 3.118261 TCTTTGATGGGTCTGATGTAGCC 60.118 47.826 0.00 0.00 35.00 3.93
2896 3912 8.443953 AAAAATTAAGATCACTAGCTAGGCAG 57.556 34.615 24.35 13.64 0.00 4.85
2919 3935 2.751436 ACGCGGCAATGCTCCATT 60.751 55.556 12.47 0.00 34.04 3.16
2924 3940 0.813184 CGGCAATGCTCCATTCTTGT 59.187 50.000 4.82 0.00 31.05 3.16
2965 5725 3.696051 AGCAGCAACCACGATTTGATATT 59.304 39.130 0.00 0.00 0.00 1.28
2996 5757 1.614903 ACACCATGTGAACTGCCATTG 59.385 47.619 0.49 0.00 36.96 2.82
3042 5803 6.480320 AGATTAGCCTAGCAAAACGACTTATG 59.520 38.462 0.00 0.00 0.00 1.90
3051 5812 7.125536 AGCAAAACGACTTATGTTTAGGTAC 57.874 36.000 0.00 0.00 38.52 3.34
3053 5814 6.527957 CAAAACGACTTATGTTTAGGTACGG 58.472 40.000 0.00 0.00 38.52 4.02
3063 5824 4.922206 TGTTTAGGTACGGAGGAAGTAGA 58.078 43.478 0.00 0.00 0.00 2.59
3074 5835 3.055747 GGAGGAAGTAGAACCTTCACCAG 60.056 52.174 3.62 0.00 42.14 4.00
3077 5838 1.629043 AGTAGAACCTTCACCAGCGA 58.371 50.000 0.00 0.00 0.00 4.93
3085 5846 1.541233 CCTTCACCAGCGAGAAACTGT 60.541 52.381 0.00 0.00 33.09 3.55
3109 5870 2.034076 GCTACGCACGACAAAAAGTTG 58.966 47.619 0.00 0.00 40.84 3.16
3136 5897 2.507484 CTGAATGTGAGGAAGCAACCA 58.493 47.619 2.26 0.00 0.00 3.67
3137 5898 2.486982 CTGAATGTGAGGAAGCAACCAG 59.513 50.000 2.26 0.00 0.00 4.00
3138 5899 2.158623 TGAATGTGAGGAAGCAACCAGT 60.159 45.455 2.26 0.00 0.00 4.00
3139 5900 2.191128 ATGTGAGGAAGCAACCAGTC 57.809 50.000 2.26 0.00 0.00 3.51
3140 5901 0.836606 TGTGAGGAAGCAACCAGTCA 59.163 50.000 2.26 0.00 0.00 3.41
3141 5902 1.202687 TGTGAGGAAGCAACCAGTCAG 60.203 52.381 2.26 0.00 0.00 3.51
3142 5903 1.131638 TGAGGAAGCAACCAGTCAGT 58.868 50.000 2.26 0.00 0.00 3.41
3143 5904 1.070758 TGAGGAAGCAACCAGTCAGTC 59.929 52.381 2.26 0.00 0.00 3.51
3144 5905 1.070758 GAGGAAGCAACCAGTCAGTCA 59.929 52.381 2.26 0.00 0.00 3.41
3145 5906 1.490490 AGGAAGCAACCAGTCAGTCAA 59.510 47.619 2.26 0.00 0.00 3.18
3146 5907 1.876156 GGAAGCAACCAGTCAGTCAAG 59.124 52.381 0.00 0.00 0.00 3.02
3147 5908 1.265365 GAAGCAACCAGTCAGTCAAGC 59.735 52.381 0.00 0.00 0.00 4.01
3148 5909 0.181114 AGCAACCAGTCAGTCAAGCA 59.819 50.000 0.00 0.00 0.00 3.91
3149 5910 0.590195 GCAACCAGTCAGTCAAGCAG 59.410 55.000 0.00 0.00 0.00 4.24
3150 5911 1.811558 GCAACCAGTCAGTCAAGCAGA 60.812 52.381 0.00 0.00 0.00 4.26
3151 5912 2.141517 CAACCAGTCAGTCAAGCAGAG 58.858 52.381 0.00 0.00 0.00 3.35
3152 5913 1.709578 ACCAGTCAGTCAAGCAGAGA 58.290 50.000 0.00 0.00 0.00 3.10
3153 5914 2.042464 ACCAGTCAGTCAAGCAGAGAA 58.958 47.619 0.00 0.00 0.00 2.87
3154 5915 2.435805 ACCAGTCAGTCAAGCAGAGAAA 59.564 45.455 0.00 0.00 0.00 2.52
3155 5916 3.065655 CCAGTCAGTCAAGCAGAGAAAG 58.934 50.000 0.00 0.00 0.00 2.62
3156 5917 2.479656 CAGTCAGTCAAGCAGAGAAAGC 59.520 50.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.577693 TGGCATTAGCAACATGATCTTCTC 59.422 41.667 0.00 0.00 44.61 2.87
139 143 6.616471 GCATGTCCGTCTGTCATTTATATTCG 60.616 42.308 0.00 0.00 0.00 3.34
154 158 2.404789 CATTGGCGCATGTCCGTC 59.595 61.111 10.83 0.00 0.00 4.79
237 241 0.588252 GCGCATGTATAACCAGGCAG 59.412 55.000 0.30 0.00 41.97 4.85
249 253 1.435925 CATGATGGCAAGCGCATGT 59.564 52.632 14.80 0.00 41.24 3.21
289 293 3.440228 CTTTTGCCTCCGTTTCGAAAAA 58.560 40.909 13.10 0.00 0.00 1.94
290 294 2.796735 GCTTTTGCCTCCGTTTCGAAAA 60.797 45.455 13.10 0.00 40.15 2.29
291 295 1.268845 GCTTTTGCCTCCGTTTCGAAA 60.269 47.619 6.47 6.47 40.15 3.46
292 296 0.309612 GCTTTTGCCTCCGTTTCGAA 59.690 50.000 0.00 0.00 40.15 3.71
293 297 1.946267 GCTTTTGCCTCCGTTTCGA 59.054 52.632 0.00 0.00 40.15 3.71
294 298 4.533566 GCTTTTGCCTCCGTTTCG 57.466 55.556 0.00 0.00 40.15 3.46
305 309 3.928727 TGAGATGAGGCAAAGCTTTTG 57.071 42.857 9.53 6.62 0.00 2.44
306 310 6.594788 TTAATGAGATGAGGCAAAGCTTTT 57.405 33.333 9.53 0.00 0.00 2.27
307 311 6.786967 ATTAATGAGATGAGGCAAAGCTTT 57.213 33.333 5.69 5.69 0.00 3.51
308 312 6.786967 AATTAATGAGATGAGGCAAAGCTT 57.213 33.333 0.00 0.00 0.00 3.74
309 313 7.776969 TCTTAATTAATGAGATGAGGCAAAGCT 59.223 33.333 0.00 0.00 0.00 3.74
310 314 7.934457 TCTTAATTAATGAGATGAGGCAAAGC 58.066 34.615 0.00 0.00 0.00 3.51
311 315 9.947669 CTTCTTAATTAATGAGATGAGGCAAAG 57.052 33.333 0.00 0.00 0.00 2.77
312 316 9.685276 TCTTCTTAATTAATGAGATGAGGCAAA 57.315 29.630 0.00 0.00 0.00 3.68
313 317 9.334947 CTCTTCTTAATTAATGAGATGAGGCAA 57.665 33.333 22.19 3.87 37.73 4.52
314 318 8.489489 ACTCTTCTTAATTAATGAGATGAGGCA 58.511 33.333 27.23 8.22 41.92 4.75
315 319 8.900983 ACTCTTCTTAATTAATGAGATGAGGC 57.099 34.615 27.23 0.00 41.92 4.70
331 335 8.717821 CGGTCATGTATTTCAAAACTCTTCTTA 58.282 33.333 0.00 0.00 0.00 2.10
332 336 7.444183 TCGGTCATGTATTTCAAAACTCTTCTT 59.556 33.333 0.00 0.00 0.00 2.52
333 337 6.934645 TCGGTCATGTATTTCAAAACTCTTCT 59.065 34.615 0.00 0.00 0.00 2.85
334 338 7.015877 GTCGGTCATGTATTTCAAAACTCTTC 58.984 38.462 0.00 0.00 0.00 2.87
335 339 6.072673 GGTCGGTCATGTATTTCAAAACTCTT 60.073 38.462 0.00 0.00 0.00 2.85
336 340 5.411669 GGTCGGTCATGTATTTCAAAACTCT 59.588 40.000 0.00 0.00 0.00 3.24
337 341 5.628134 GGTCGGTCATGTATTTCAAAACTC 58.372 41.667 0.00 0.00 0.00 3.01
338 342 4.153475 CGGTCGGTCATGTATTTCAAAACT 59.847 41.667 0.00 0.00 0.00 2.66
339 343 4.083696 ACGGTCGGTCATGTATTTCAAAAC 60.084 41.667 0.00 0.00 0.00 2.43
340 344 4.066490 ACGGTCGGTCATGTATTTCAAAA 58.934 39.130 0.00 0.00 0.00 2.44
341 345 3.666274 ACGGTCGGTCATGTATTTCAAA 58.334 40.909 0.00 0.00 0.00 2.69
342 346 3.255725 GACGGTCGGTCATGTATTTCAA 58.744 45.455 5.71 0.00 45.36 2.69
343 347 2.883574 GACGGTCGGTCATGTATTTCA 58.116 47.619 5.71 0.00 45.36 2.69
353 357 2.183555 GTCCATGGACGGTCGGTC 59.816 66.667 28.52 3.94 45.31 4.79
361 365 0.394352 AATTGAGGCCGTCCATGGAC 60.394 55.000 31.59 31.59 41.40 4.02
362 366 0.107214 GAATTGAGGCCGTCCATGGA 60.107 55.000 11.44 11.44 33.74 3.41
363 367 1.439353 CGAATTGAGGCCGTCCATGG 61.439 60.000 4.97 4.97 33.74 3.66
364 368 0.461870 TCGAATTGAGGCCGTCCATG 60.462 55.000 0.00 0.00 33.74 3.66
365 369 0.251916 TTCGAATTGAGGCCGTCCAT 59.748 50.000 0.00 0.00 33.74 3.41
366 370 0.035598 TTTCGAATTGAGGCCGTCCA 59.964 50.000 0.00 0.00 33.74 4.02
367 371 0.727398 CTTTCGAATTGAGGCCGTCC 59.273 55.000 0.00 0.00 0.00 4.79
368 372 1.393883 GACTTTCGAATTGAGGCCGTC 59.606 52.381 0.00 0.00 0.00 4.79
369 373 1.002087 AGACTTTCGAATTGAGGCCGT 59.998 47.619 0.00 0.00 0.00 5.68
370 374 1.726853 AGACTTTCGAATTGAGGCCG 58.273 50.000 0.00 0.00 0.00 6.13
371 375 3.863041 AGTAGACTTTCGAATTGAGGCC 58.137 45.455 0.00 0.00 0.00 5.19
372 376 4.749976 AGAGTAGACTTTCGAATTGAGGC 58.250 43.478 0.00 0.00 0.00 4.70
382 386 3.967203 ATACCGCGAGAGTAGACTTTC 57.033 47.619 8.23 0.00 0.00 2.62
383 387 5.121811 TCTTATACCGCGAGAGTAGACTTT 58.878 41.667 8.23 0.00 0.00 2.66
384 388 4.701765 TCTTATACCGCGAGAGTAGACTT 58.298 43.478 8.23 0.00 0.00 3.01
385 389 4.039004 TCTCTTATACCGCGAGAGTAGACT 59.961 45.833 18.00 0.00 38.41 3.24
386 390 4.305769 TCTCTTATACCGCGAGAGTAGAC 58.694 47.826 18.00 0.00 38.41 2.59
387 391 4.597404 TCTCTTATACCGCGAGAGTAGA 57.403 45.455 18.00 9.87 38.41 2.59
388 392 4.751098 AGTTCTCTTATACCGCGAGAGTAG 59.249 45.833 18.00 6.45 38.41 2.57
389 393 4.701765 AGTTCTCTTATACCGCGAGAGTA 58.298 43.478 18.00 8.60 38.41 2.59
390 394 3.543665 AGTTCTCTTATACCGCGAGAGT 58.456 45.455 18.00 6.69 38.41 3.24
391 395 3.560481 TGAGTTCTCTTATACCGCGAGAG 59.440 47.826 8.23 11.90 38.57 3.20
392 396 3.538591 TGAGTTCTCTTATACCGCGAGA 58.461 45.455 8.23 0.00 32.36 4.04
393 397 3.965292 TGAGTTCTCTTATACCGCGAG 57.035 47.619 8.23 0.00 0.00 5.03
394 398 4.707030 TTTGAGTTCTCTTATACCGCGA 57.293 40.909 8.23 0.00 0.00 5.87
395 399 4.318121 GCATTTGAGTTCTCTTATACCGCG 60.318 45.833 0.00 0.00 0.00 6.46
396 400 4.811557 AGCATTTGAGTTCTCTTATACCGC 59.188 41.667 1.53 0.00 0.00 5.68
397 401 6.238211 CCAAGCATTTGAGTTCTCTTATACCG 60.238 42.308 1.53 0.00 36.36 4.02
398 402 6.458888 GCCAAGCATTTGAGTTCTCTTATACC 60.459 42.308 1.53 0.00 36.36 2.73
399 403 6.458888 GGCCAAGCATTTGAGTTCTCTTATAC 60.459 42.308 0.00 0.00 36.36 1.47
400 404 5.590259 GGCCAAGCATTTGAGTTCTCTTATA 59.410 40.000 0.00 0.00 36.36 0.98
401 405 4.400567 GGCCAAGCATTTGAGTTCTCTTAT 59.599 41.667 0.00 0.00 36.36 1.73
402 406 3.758554 GGCCAAGCATTTGAGTTCTCTTA 59.241 43.478 0.00 0.00 36.36 2.10
403 407 2.560105 GGCCAAGCATTTGAGTTCTCTT 59.440 45.455 0.00 0.00 36.36 2.85
404 408 2.165998 GGCCAAGCATTTGAGTTCTCT 58.834 47.619 0.00 0.00 36.36 3.10
405 409 1.203287 GGGCCAAGCATTTGAGTTCTC 59.797 52.381 4.39 0.00 36.36 2.87
406 410 1.260544 GGGCCAAGCATTTGAGTTCT 58.739 50.000 4.39 0.00 36.36 3.01
407 411 0.247460 GGGGCCAAGCATTTGAGTTC 59.753 55.000 4.39 0.00 36.36 3.01
408 412 1.194121 GGGGGCCAAGCATTTGAGTT 61.194 55.000 4.39 0.00 36.36 3.01
409 413 1.610379 GGGGGCCAAGCATTTGAGT 60.610 57.895 4.39 0.00 36.36 3.41
410 414 2.713967 CGGGGGCCAAGCATTTGAG 61.714 63.158 4.39 0.00 36.36 3.02
411 415 2.679642 CGGGGGCCAAGCATTTGA 60.680 61.111 4.39 0.00 36.36 2.69
412 416 4.455906 GCGGGGGCCAAGCATTTG 62.456 66.667 16.10 0.00 0.00 2.32
427 431 4.994756 AGGCTTTGGGGGTTGGCG 62.995 66.667 0.00 0.00 0.00 5.69
428 432 3.313524 CAGGCTTTGGGGGTTGGC 61.314 66.667 0.00 0.00 0.00 4.52
429 433 2.604382 CCAGGCTTTGGGGGTTGG 60.604 66.667 0.00 0.00 43.75 3.77
440 444 0.912486 ATTAAGACCGAAGCCAGGCT 59.088 50.000 8.70 8.70 42.56 4.58
441 445 1.671328 GAATTAAGACCGAAGCCAGGC 59.329 52.381 1.84 1.84 0.00 4.85
442 446 3.268023 AGAATTAAGACCGAAGCCAGG 57.732 47.619 0.00 0.00 0.00 4.45
443 447 5.263968 TCTAGAATTAAGACCGAAGCCAG 57.736 43.478 0.00 0.00 0.00 4.85
444 448 5.128827 ACATCTAGAATTAAGACCGAAGCCA 59.871 40.000 0.00 0.00 0.00 4.75
445 449 5.463724 CACATCTAGAATTAAGACCGAAGCC 59.536 44.000 0.00 0.00 0.00 4.35
446 450 6.273825 TCACATCTAGAATTAAGACCGAAGC 58.726 40.000 0.00 0.00 0.00 3.86
447 451 8.879342 AATCACATCTAGAATTAAGACCGAAG 57.121 34.615 0.00 0.00 0.00 3.79
448 452 9.745880 GTAATCACATCTAGAATTAAGACCGAA 57.254 33.333 0.00 0.00 0.00 4.30
449 453 8.909923 TGTAATCACATCTAGAATTAAGACCGA 58.090 33.333 0.00 0.00 0.00 4.69
450 454 9.698309 ATGTAATCACATCTAGAATTAAGACCG 57.302 33.333 0.00 0.00 41.75 4.79
457 461 9.970553 ATGCCATATGTAATCACATCTAGAATT 57.029 29.630 0.00 0.00 44.42 2.17
458 462 9.392259 CATGCCATATGTAATCACATCTAGAAT 57.608 33.333 0.00 0.00 44.42 2.40
459 463 7.825761 CCATGCCATATGTAATCACATCTAGAA 59.174 37.037 0.00 0.00 44.42 2.10
460 464 7.180766 TCCATGCCATATGTAATCACATCTAGA 59.819 37.037 1.24 0.00 44.42 2.43
461 465 7.333323 TCCATGCCATATGTAATCACATCTAG 58.667 38.462 1.24 0.00 44.42 2.43
462 466 7.256494 TCCATGCCATATGTAATCACATCTA 57.744 36.000 1.24 0.00 44.42 1.98
463 467 6.130692 TCCATGCCATATGTAATCACATCT 57.869 37.500 1.24 0.00 44.42 2.90
464 468 5.356190 CCTCCATGCCATATGTAATCACATC 59.644 44.000 1.24 0.00 44.42 3.06
466 470 4.350520 TCCTCCATGCCATATGTAATCACA 59.649 41.667 1.24 0.00 39.52 3.58
467 471 4.697352 GTCCTCCATGCCATATGTAATCAC 59.303 45.833 1.24 0.00 0.00 3.06
468 472 4.350520 TGTCCTCCATGCCATATGTAATCA 59.649 41.667 1.24 0.00 0.00 2.57
469 473 4.697352 GTGTCCTCCATGCCATATGTAATC 59.303 45.833 1.24 0.00 0.00 1.75
470 474 4.104579 TGTGTCCTCCATGCCATATGTAAT 59.895 41.667 1.24 0.00 0.00 1.89
471 475 3.457749 TGTGTCCTCCATGCCATATGTAA 59.542 43.478 1.24 0.00 0.00 2.41
472 476 3.044894 TGTGTCCTCCATGCCATATGTA 58.955 45.455 1.24 0.00 0.00 2.29
473 477 1.845791 TGTGTCCTCCATGCCATATGT 59.154 47.619 1.24 0.00 0.00 2.29
474 478 2.643995 TGTGTCCTCCATGCCATATG 57.356 50.000 0.00 0.00 0.00 1.78
475 479 3.499202 GGAATGTGTCCTCCATGCCATAT 60.499 47.826 0.00 0.00 43.98 1.78
476 480 2.158623 GGAATGTGTCCTCCATGCCATA 60.159 50.000 0.00 0.00 43.98 2.74
477 481 1.410648 GGAATGTGTCCTCCATGCCAT 60.411 52.381 0.00 0.00 43.98 4.40
478 482 0.034186 GGAATGTGTCCTCCATGCCA 60.034 55.000 0.00 0.00 43.98 4.92
479 483 2.799176 GGAATGTGTCCTCCATGCC 58.201 57.895 0.00 0.00 43.98 4.40
488 492 3.368236 GCGAGAGTGTTTAGGAATGTGTC 59.632 47.826 0.00 0.00 0.00 3.67
489 493 3.326747 GCGAGAGTGTTTAGGAATGTGT 58.673 45.455 0.00 0.00 0.00 3.72
490 494 2.345641 CGCGAGAGTGTTTAGGAATGTG 59.654 50.000 0.00 0.00 36.71 3.21
491 495 2.607187 CGCGAGAGTGTTTAGGAATGT 58.393 47.619 0.00 0.00 36.71 2.71
511 515 1.393883 GAGATTTGGAACGAGCGGAAC 59.606 52.381 0.00 0.00 0.00 3.62
512 516 1.674817 GGAGATTTGGAACGAGCGGAA 60.675 52.381 0.00 0.00 0.00 4.30
513 517 0.108329 GGAGATTTGGAACGAGCGGA 60.108 55.000 0.00 0.00 0.00 5.54
514 518 1.090052 GGGAGATTTGGAACGAGCGG 61.090 60.000 0.00 0.00 0.00 5.52
515 519 0.391130 TGGGAGATTTGGAACGAGCG 60.391 55.000 0.00 0.00 0.00 5.03
516 520 1.672881 CATGGGAGATTTGGAACGAGC 59.327 52.381 0.00 0.00 0.00 5.03
517 521 3.266510 TCATGGGAGATTTGGAACGAG 57.733 47.619 0.00 0.00 0.00 4.18
518 522 3.712016 TTCATGGGAGATTTGGAACGA 57.288 42.857 0.00 0.00 0.00 3.85
519 523 3.119495 GGTTTCATGGGAGATTTGGAACG 60.119 47.826 0.00 0.00 30.95 3.95
520 524 3.831911 TGGTTTCATGGGAGATTTGGAAC 59.168 43.478 0.00 0.00 0.00 3.62
521 525 4.125124 TGGTTTCATGGGAGATTTGGAA 57.875 40.909 0.00 0.00 0.00 3.53
522 526 3.824001 TGGTTTCATGGGAGATTTGGA 57.176 42.857 0.00 0.00 0.00 3.53
523 527 3.577848 TGTTGGTTTCATGGGAGATTTGG 59.422 43.478 0.00 0.00 0.00 3.28
524 528 4.870123 TGTTGGTTTCATGGGAGATTTG 57.130 40.909 0.00 0.00 0.00 2.32
525 529 5.047092 GTCATGTTGGTTTCATGGGAGATTT 60.047 40.000 6.15 0.00 41.79 2.17
526 530 4.463891 GTCATGTTGGTTTCATGGGAGATT 59.536 41.667 6.15 0.00 41.79 2.40
527 531 4.019174 GTCATGTTGGTTTCATGGGAGAT 58.981 43.478 6.15 0.00 41.79 2.75
528 532 3.420893 GTCATGTTGGTTTCATGGGAGA 58.579 45.455 6.15 0.00 41.79 3.71
529 533 2.162208 CGTCATGTTGGTTTCATGGGAG 59.838 50.000 6.15 0.00 41.79 4.30
530 534 2.158559 CGTCATGTTGGTTTCATGGGA 58.841 47.619 6.15 0.00 41.79 4.37
531 535 2.095263 GTCGTCATGTTGGTTTCATGGG 60.095 50.000 6.15 0.63 41.79 4.00
532 536 2.551887 TGTCGTCATGTTGGTTTCATGG 59.448 45.455 6.15 0.00 41.79 3.66
533 537 3.498018 TCTGTCGTCATGTTGGTTTCATG 59.502 43.478 0.00 0.00 42.53 3.07
534 538 3.738982 TCTGTCGTCATGTTGGTTTCAT 58.261 40.909 0.00 0.00 0.00 2.57
535 539 3.186702 TCTGTCGTCATGTTGGTTTCA 57.813 42.857 0.00 0.00 0.00 2.69
536 540 3.667960 GCATCTGTCGTCATGTTGGTTTC 60.668 47.826 0.00 0.00 0.00 2.78
537 541 2.226437 GCATCTGTCGTCATGTTGGTTT 59.774 45.455 0.00 0.00 0.00 3.27
538 542 1.806542 GCATCTGTCGTCATGTTGGTT 59.193 47.619 0.00 0.00 0.00 3.67
539 543 1.442769 GCATCTGTCGTCATGTTGGT 58.557 50.000 0.00 0.00 0.00 3.67
540 544 0.371301 CGCATCTGTCGTCATGTTGG 59.629 55.000 0.00 0.00 0.00 3.77
541 545 1.322637 CTCGCATCTGTCGTCATGTTG 59.677 52.381 0.00 0.00 0.00 3.33
542 546 1.633561 CTCGCATCTGTCGTCATGTT 58.366 50.000 0.00 0.00 0.00 2.71
543 547 0.179127 CCTCGCATCTGTCGTCATGT 60.179 55.000 0.00 0.00 0.00 3.21
544 548 1.485838 GCCTCGCATCTGTCGTCATG 61.486 60.000 0.00 0.00 0.00 3.07
545 549 1.227089 GCCTCGCATCTGTCGTCAT 60.227 57.895 0.00 0.00 0.00 3.06
546 550 2.181777 GCCTCGCATCTGTCGTCA 59.818 61.111 0.00 0.00 0.00 4.35
547 551 2.583593 GGCCTCGCATCTGTCGTC 60.584 66.667 0.00 0.00 0.00 4.20
548 552 4.148825 GGGCCTCGCATCTGTCGT 62.149 66.667 0.84 0.00 0.00 4.34
549 553 2.859273 AAAGGGCCTCGCATCTGTCG 62.859 60.000 6.46 0.00 0.00 4.35
550 554 1.078143 AAAGGGCCTCGCATCTGTC 60.078 57.895 6.46 0.00 0.00 3.51
551 555 1.078143 GAAAGGGCCTCGCATCTGT 60.078 57.895 6.46 0.00 0.00 3.41
552 556 0.813210 GAGAAAGGGCCTCGCATCTG 60.813 60.000 6.46 0.00 0.00 2.90
553 557 1.267574 TGAGAAAGGGCCTCGCATCT 61.268 55.000 6.46 8.73 33.51 2.90
554 558 1.092345 GTGAGAAAGGGCCTCGCATC 61.092 60.000 6.46 3.64 40.02 3.91
555 559 1.078143 GTGAGAAAGGGCCTCGCAT 60.078 57.895 6.46 0.00 40.02 4.73
556 560 2.347490 GTGAGAAAGGGCCTCGCA 59.653 61.111 6.46 0.00 40.02 5.10
557 561 0.678048 AATGTGAGAAAGGGCCTCGC 60.678 55.000 6.46 1.02 40.51 5.03
558 562 1.089920 CAATGTGAGAAAGGGCCTCG 58.910 55.000 6.46 0.00 33.51 4.63
559 563 1.467920 CCAATGTGAGAAAGGGCCTC 58.532 55.000 6.46 0.00 0.00 4.70
560 564 0.613012 GCCAATGTGAGAAAGGGCCT 60.613 55.000 0.00 0.00 35.42 5.19
561 565 0.899717 TGCCAATGTGAGAAAGGGCC 60.900 55.000 0.00 0.00 40.64 5.80
562 566 1.188863 ATGCCAATGTGAGAAAGGGC 58.811 50.000 0.00 0.00 41.70 5.19
563 567 2.827322 TCAATGCCAATGTGAGAAAGGG 59.173 45.455 0.00 0.00 0.00 3.95
564 568 3.671433 CGTCAATGCCAATGTGAGAAAGG 60.671 47.826 0.00 0.00 0.00 3.11
565 569 3.495193 CGTCAATGCCAATGTGAGAAAG 58.505 45.455 0.00 0.00 0.00 2.62
566 570 2.351641 GCGTCAATGCCAATGTGAGAAA 60.352 45.455 0.00 0.00 0.00 2.52
567 571 1.199789 GCGTCAATGCCAATGTGAGAA 59.800 47.619 0.00 0.00 0.00 2.87
568 572 0.804364 GCGTCAATGCCAATGTGAGA 59.196 50.000 0.00 0.00 0.00 3.27
569 573 3.317608 GCGTCAATGCCAATGTGAG 57.682 52.632 0.00 0.00 0.00 3.51
578 582 2.342650 ACATGGTGGGCGTCAATGC 61.343 57.895 0.00 0.00 0.00 3.56
579 583 1.507630 CACATGGTGGGCGTCAATG 59.492 57.895 0.00 0.00 0.00 2.82
580 584 4.001248 CACATGGTGGGCGTCAAT 57.999 55.556 0.00 0.00 0.00 2.57
591 595 1.973281 GACTGGTGGCACCACATGG 60.973 63.158 34.67 25.96 44.79 3.66
592 596 1.973281 GGACTGGTGGCACCACATG 60.973 63.158 34.67 26.32 44.79 3.21
593 597 1.719063 AAGGACTGGTGGCACCACAT 61.719 55.000 34.67 25.04 44.79 3.21
594 598 2.382770 AAGGACTGGTGGCACCACA 61.383 57.895 34.67 15.98 44.79 4.17
595 599 1.898574 CAAGGACTGGTGGCACCAC 60.899 63.158 34.67 24.98 44.79 4.16
597 601 1.600916 GTCAAGGACTGGTGGCACC 60.601 63.158 29.75 29.75 39.22 5.01
598 602 1.961277 CGTCAAGGACTGGTGGCAC 60.961 63.158 9.70 9.70 0.00 5.01
599 603 1.978455 AACGTCAAGGACTGGTGGCA 61.978 55.000 0.00 0.00 0.00 4.92
600 604 1.227853 AACGTCAAGGACTGGTGGC 60.228 57.895 0.00 0.00 0.00 5.01
601 605 0.179056 ACAACGTCAAGGACTGGTGG 60.179 55.000 0.00 0.00 31.76 4.61
602 606 1.217882 GACAACGTCAAGGACTGGTG 58.782 55.000 0.00 0.00 32.96 4.17
603 607 0.249322 CGACAACGTCAAGGACTGGT 60.249 55.000 0.00 0.00 32.09 4.00
604 608 0.031585 TCGACAACGTCAAGGACTGG 59.968 55.000 0.00 0.00 40.69 4.00
605 609 1.787155 CTTCGACAACGTCAAGGACTG 59.213 52.381 0.00 0.00 40.69 3.51
606 610 1.868519 GCTTCGACAACGTCAAGGACT 60.869 52.381 0.00 0.00 40.69 3.85
607 611 0.507358 GCTTCGACAACGTCAAGGAC 59.493 55.000 0.00 0.00 40.69 3.85
608 612 0.387929 AGCTTCGACAACGTCAAGGA 59.612 50.000 0.00 0.00 40.69 3.36
609 613 0.508641 CAGCTTCGACAACGTCAAGG 59.491 55.000 0.00 0.00 40.69 3.61
610 614 0.111089 GCAGCTTCGACAACGTCAAG 60.111 55.000 0.00 0.00 40.69 3.02
611 615 0.529773 AGCAGCTTCGACAACGTCAA 60.530 50.000 0.00 0.00 40.69 3.18
612 616 0.939577 GAGCAGCTTCGACAACGTCA 60.940 55.000 0.00 0.00 40.69 4.35
613 617 1.618640 GGAGCAGCTTCGACAACGTC 61.619 60.000 0.00 0.00 40.69 4.34
614 618 1.664965 GGAGCAGCTTCGACAACGT 60.665 57.895 0.00 0.00 40.69 3.99
615 619 1.621301 CTGGAGCAGCTTCGACAACG 61.621 60.000 0.00 0.00 41.26 4.10
616 620 0.601311 ACTGGAGCAGCTTCGACAAC 60.601 55.000 0.00 0.00 34.37 3.32
617 621 0.319900 GACTGGAGCAGCTTCGACAA 60.320 55.000 0.00 0.00 34.37 3.18
618 622 1.290324 GACTGGAGCAGCTTCGACA 59.710 57.895 0.00 0.00 34.37 4.35
619 623 1.803519 CGACTGGAGCAGCTTCGAC 60.804 63.158 8.30 0.00 33.71 4.20
620 624 2.568612 CGACTGGAGCAGCTTCGA 59.431 61.111 8.30 0.00 33.71 3.71
621 625 2.507992 CCGACTGGAGCAGCTTCG 60.508 66.667 7.18 7.18 37.49 3.79
622 626 2.817396 GCCGACTGGAGCAGCTTC 60.817 66.667 0.00 0.00 37.49 3.86
623 627 4.749310 CGCCGACTGGAGCAGCTT 62.749 66.667 0.00 0.00 37.49 3.74
625 629 4.521062 ATCGCCGACTGGAGCAGC 62.521 66.667 0.00 0.00 37.49 5.25
626 630 2.584418 CATCGCCGACTGGAGCAG 60.584 66.667 0.00 0.00 37.49 4.24
627 631 3.356639 GACATCGCCGACTGGAGCA 62.357 63.158 0.00 0.00 37.49 4.26
628 632 2.583593 GACATCGCCGACTGGAGC 60.584 66.667 0.00 0.00 37.49 4.70
629 633 2.105128 GGACATCGCCGACTGGAG 59.895 66.667 0.00 0.00 37.49 3.86
630 634 2.678580 TGGACATCGCCGACTGGA 60.679 61.111 0.00 0.00 37.49 3.86
631 635 2.509336 GTGGACATCGCCGACTGG 60.509 66.667 0.00 0.00 38.77 4.00
632 636 0.740868 AATGTGGACATCGCCGACTG 60.741 55.000 0.00 0.00 35.10 3.51
633 637 0.740868 CAATGTGGACATCGCCGACT 60.741 55.000 0.00 0.00 35.10 4.18
634 638 1.705337 CCAATGTGGACATCGCCGAC 61.705 60.000 0.00 0.00 40.96 4.79
635 639 1.449423 CCAATGTGGACATCGCCGA 60.449 57.895 0.00 0.00 40.96 5.54
636 640 1.705337 GACCAATGTGGACATCGCCG 61.705 60.000 0.18 0.00 40.96 6.46
637 641 0.676466 TGACCAATGTGGACATCGCC 60.676 55.000 0.18 0.00 40.96 5.54
638 642 1.131126 CTTGACCAATGTGGACATCGC 59.869 52.381 0.18 0.00 41.46 4.58
639 643 1.131126 GCTTGACCAATGTGGACATCG 59.869 52.381 0.18 0.00 41.46 3.84
640 644 1.474077 GGCTTGACCAATGTGGACATC 59.526 52.381 0.18 0.00 41.46 3.06
641 645 1.549203 GGCTTGACCAATGTGGACAT 58.451 50.000 0.18 0.00 41.46 3.06
642 646 0.539438 GGGCTTGACCAATGTGGACA 60.539 55.000 0.18 0.00 40.96 4.02
643 647 0.539438 TGGGCTTGACCAATGTGGAC 60.539 55.000 0.18 0.00 40.96 4.02
644 648 0.409092 ATGGGCTTGACCAATGTGGA 59.591 50.000 0.00 0.00 45.13 4.02
645 649 0.819582 GATGGGCTTGACCAATGTGG 59.180 55.000 0.00 0.00 45.13 4.17
646 650 0.819582 GGATGGGCTTGACCAATGTG 59.180 55.000 0.00 0.00 45.13 3.21
647 651 0.409092 TGGATGGGCTTGACCAATGT 59.591 50.000 0.00 0.00 45.13 2.71
648 652 1.479323 CTTGGATGGGCTTGACCAATG 59.521 52.381 0.00 0.00 45.13 2.82
649 653 1.077663 ACTTGGATGGGCTTGACCAAT 59.922 47.619 0.00 0.00 45.13 3.16
650 654 0.482446 ACTTGGATGGGCTTGACCAA 59.518 50.000 0.00 0.00 45.13 3.67
651 655 0.038166 GACTTGGATGGGCTTGACCA 59.962 55.000 0.00 0.00 46.24 4.02
652 656 0.329596 AGACTTGGATGGGCTTGACC 59.670 55.000 0.00 0.00 37.93 4.02
653 657 1.815003 CAAGACTTGGATGGGCTTGAC 59.185 52.381 7.35 0.00 38.50 3.18
654 658 1.704628 TCAAGACTTGGATGGGCTTGA 59.295 47.619 15.13 7.77 41.67 3.02
655 659 2.205022 TCAAGACTTGGATGGGCTTG 57.795 50.000 15.13 3.19 37.79 4.01
656 660 2.579860 AGATCAAGACTTGGATGGGCTT 59.420 45.455 15.13 0.00 0.00 4.35
657 661 2.172293 GAGATCAAGACTTGGATGGGCT 59.828 50.000 15.13 4.20 0.00 5.19
658 662 2.570135 GAGATCAAGACTTGGATGGGC 58.430 52.381 15.13 0.00 0.00 5.36
659 663 2.484417 CGGAGATCAAGACTTGGATGGG 60.484 54.545 15.13 0.00 0.00 4.00
660 664 2.831333 CGGAGATCAAGACTTGGATGG 58.169 52.381 15.13 0.00 0.00 3.51
661 665 2.208431 GCGGAGATCAAGACTTGGATG 58.792 52.381 15.13 1.75 0.00 3.51
662 666 1.139853 GGCGGAGATCAAGACTTGGAT 59.860 52.381 15.13 7.47 0.00 3.41
663 667 0.537188 GGCGGAGATCAAGACTTGGA 59.463 55.000 15.13 2.90 0.00 3.53
664 668 0.462759 GGGCGGAGATCAAGACTTGG 60.463 60.000 15.13 0.00 0.00 3.61
665 669 0.807667 CGGGCGGAGATCAAGACTTG 60.808 60.000 9.03 9.03 0.00 3.16
666 670 1.258445 ACGGGCGGAGATCAAGACTT 61.258 55.000 0.00 0.00 0.00 3.01
667 671 0.395311 TACGGGCGGAGATCAAGACT 60.395 55.000 0.00 0.00 0.00 3.24
668 672 0.674534 ATACGGGCGGAGATCAAGAC 59.325 55.000 0.00 0.00 0.00 3.01
669 673 0.673985 CATACGGGCGGAGATCAAGA 59.326 55.000 0.00 0.00 0.00 3.02
670 674 0.389391 ACATACGGGCGGAGATCAAG 59.611 55.000 0.00 0.00 0.00 3.02
671 675 1.338973 GTACATACGGGCGGAGATCAA 59.661 52.381 0.00 0.00 0.00 2.57
672 676 0.956633 GTACATACGGGCGGAGATCA 59.043 55.000 0.00 0.00 0.00 2.92
673 677 1.199558 GAGTACATACGGGCGGAGATC 59.800 57.143 0.00 0.00 0.00 2.75
674 678 1.245732 GAGTACATACGGGCGGAGAT 58.754 55.000 0.00 0.00 0.00 2.75
675 679 1.162181 CGAGTACATACGGGCGGAGA 61.162 60.000 0.00 0.00 0.00 3.71
676 680 1.281960 CGAGTACATACGGGCGGAG 59.718 63.158 0.00 0.00 0.00 4.63
677 681 2.837883 GCGAGTACATACGGGCGGA 61.838 63.158 0.00 0.00 0.00 5.54
678 682 2.354305 GCGAGTACATACGGGCGG 60.354 66.667 0.00 0.00 0.00 6.13
679 683 1.657487 CAGCGAGTACATACGGGCG 60.657 63.158 0.00 0.00 35.45 6.13
680 684 1.299926 CCAGCGAGTACATACGGGC 60.300 63.158 0.00 0.76 0.00 6.13
710 717 6.259167 TGTGTAGGTGAATCAATTATTACCGC 59.741 38.462 0.00 0.00 31.64 5.68
866 1768 6.246163 AGTAGAAATCAAAGGGGAACGAAAT 58.754 36.000 0.00 0.00 0.00 2.17
873 1775 7.110155 GTGTTCATAGTAGAAATCAAAGGGGA 58.890 38.462 0.00 0.00 0.00 4.81
1114 2042 4.976116 CGAGAAAATCCTTGTTGTTTCACC 59.024 41.667 0.00 0.00 33.37 4.02
1122 2050 3.077359 CTCCAGCGAGAAAATCCTTGTT 58.923 45.455 0.00 0.00 38.52 2.83
1610 2539 5.368145 TGGTCTATATGCACCAATCTTGAC 58.632 41.667 5.35 0.00 39.85 3.18
1795 2726 6.869206 AGTAACAAGATAAACTCTGGGCTA 57.131 37.500 0.00 0.00 33.29 3.93
1836 2767 6.177610 CGACTATCTCTCTTATAGGCCTCTT 58.822 44.000 9.68 0.00 32.18 2.85
1844 2775 5.552178 TGAGCAGCGACTATCTCTCTTATA 58.448 41.667 0.00 0.00 0.00 0.98
1899 2830 0.319900 GCGAGAGAGGCAACACTGAA 60.320 55.000 0.00 0.00 37.77 3.02
1913 2844 0.811915 GTAGGCACTTCTCTGCGAGA 59.188 55.000 4.47 4.47 41.75 4.04
1924 2855 1.480954 CACCTTGGATACGTAGGCACT 59.519 52.381 0.08 0.00 42.99 4.40
1934 2865 2.919602 AGGCCTTTCTTCACCTTGGATA 59.080 45.455 0.00 0.00 0.00 2.59
2002 2933 3.135348 AGTGACATGGGATGACATCGAAT 59.865 43.478 9.31 2.88 37.29 3.34
2026 2957 4.873768 GCTTCAGCTCTACCATTTTCTC 57.126 45.455 0.00 0.00 38.21 2.87
2050 2981 4.867047 CGTTAGCTGAGTGAGATGAAACAT 59.133 41.667 0.00 0.00 0.00 2.71
2055 2986 2.685388 CTCCGTTAGCTGAGTGAGATGA 59.315 50.000 0.00 0.00 0.00 2.92
2057 2988 2.729194 ACTCCGTTAGCTGAGTGAGAT 58.271 47.619 10.21 0.00 37.70 2.75
2068 2999 6.122804 TGGTGACTGGATCAACTCCGTTAG 62.123 50.000 0.00 0.00 46.23 2.34
2091 3022 7.524717 AGCTATAACATCTTTGGTTGTTTGT 57.475 32.000 0.00 0.00 36.89 2.83
2211 3171 7.504924 ACAGAGCTTATACTATGACACTCTC 57.495 40.000 0.00 0.00 33.13 3.20
2212 3172 7.889873 AACAGAGCTTATACTATGACACTCT 57.110 36.000 0.00 0.00 33.13 3.24
2213 3173 8.934507 AAAACAGAGCTTATACTATGACACTC 57.065 34.615 0.00 0.00 33.13 3.51
2283 3244 2.622064 ATAGAATCCGCCAAGGTGTC 57.378 50.000 0.00 0.00 41.99 3.67
2286 3247 3.644966 TCAAATAGAATCCGCCAAGGT 57.355 42.857 0.00 0.00 41.99 3.50
2306 3267 3.901844 TCCAGGGCGAGCTAACTAAATAT 59.098 43.478 0.00 0.00 0.00 1.28
2365 3327 9.656040 TCTTTAGTTATAAACGCACTTATTCCA 57.344 29.630 0.00 0.00 36.23 3.53
2394 3403 5.685511 CGCTACATAAAACAGTTGCAACTTT 59.314 36.000 29.23 20.89 37.08 2.66
2405 3414 4.517453 AGAGTTTTGGCGCTACATAAAACA 59.483 37.500 24.19 6.67 42.45 2.83
2528 3537 7.231317 AGTGAAGTTAATCAAACATGTGGATGT 59.769 33.333 12.53 7.12 45.24 3.06
2657 3666 9.252635 TCATCTATCAACTATCAGTGATATGCT 57.747 33.333 13.22 4.63 0.00 3.79
2664 3673 8.710551 GCAGAATTCATCTATCAACTATCAGTG 58.289 37.037 8.44 0.00 36.32 3.66
2665 3674 8.649591 AGCAGAATTCATCTATCAACTATCAGT 58.350 33.333 8.44 0.00 36.32 3.41
2672 3681 8.719648 CAATCCTAGCAGAATTCATCTATCAAC 58.280 37.037 8.44 0.00 36.32 3.18
2675 3684 6.877855 TGCAATCCTAGCAGAATTCATCTATC 59.122 38.462 8.44 0.00 36.32 2.08
2712 3727 4.281657 GGCAGTTTTGATTATCTCCCCTT 58.718 43.478 0.00 0.00 0.00 3.95
2716 3731 3.541632 TCGGGCAGTTTTGATTATCTCC 58.458 45.455 0.00 0.00 0.00 3.71
2735 3750 6.503872 GCTTTAACGTTATACTGACTCGTTCG 60.504 42.308 9.18 0.00 42.29 3.95
2765 3780 4.809426 CCTACTAAGTTTAGACCATTGCCG 59.191 45.833 5.93 0.00 34.84 5.69
2786 3801 0.255890 ACATGGGAAAGCGCATACCT 59.744 50.000 11.47 0.00 44.81 3.08
2889 3905 2.887568 CGCGTGGAAGCTGCCTAG 60.888 66.667 13.40 6.99 34.40 3.02
2890 3906 4.451150 CCGCGTGGAAGCTGCCTA 62.451 66.667 13.40 0.00 37.49 3.93
2894 3910 3.434319 ATTGCCGCGTGGAAGCTG 61.434 61.111 21.76 0.00 37.49 4.24
2895 3911 3.434319 CATTGCCGCGTGGAAGCT 61.434 61.111 21.76 0.00 37.49 3.74
2919 3935 2.419990 CCGTGATAGGGCATTGACAAGA 60.420 50.000 0.00 0.00 0.00 3.02
2965 5725 6.427853 CAGTTCACATGGTGTATTCAGAGAAA 59.572 38.462 0.00 0.00 34.79 2.52
2996 5757 2.496871 TCAAATGATGGCCAATGTCACC 59.503 45.455 10.96 0.00 0.00 4.02
3042 5803 5.393569 GGTTCTACTTCCTCCGTACCTAAAC 60.394 48.000 0.00 0.00 0.00 2.01
3051 5812 2.094130 GGTGAAGGTTCTACTTCCTCCG 60.094 54.545 3.77 0.00 44.85 4.63
3053 5814 3.617775 GCTGGTGAAGGTTCTACTTCCTC 60.618 52.174 3.77 0.00 44.85 3.71
3063 5824 1.141053 AGTTTCTCGCTGGTGAAGGTT 59.859 47.619 0.00 0.00 0.00 3.50
3074 5835 1.736645 TAGCGCCACAGTTTCTCGC 60.737 57.895 2.29 0.00 45.34 5.03
3077 5838 4.261888 CGTAGCGCCACAGTTTCT 57.738 55.556 2.29 0.00 0.00 2.52
3109 5870 0.036732 TCCTCACATTCAGGCCACAC 59.963 55.000 5.01 0.00 0.00 3.82
3136 5897 2.765122 GCTTTCTCTGCTTGACTGACT 58.235 47.619 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.