Multiple sequence alignment - TraesCS7A01G469600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G469600 chr7A 100.000 2276 0 0 1 2276 666181150 666178875 0.000000e+00 4204
1 TraesCS7A01G469600 chr7A 89.276 774 81 2 1 772 665975147 665974374 0.000000e+00 968
2 TraesCS7A01G469600 chr7A 98.492 398 6 0 981 1378 560300855 560301252 0.000000e+00 702
3 TraesCS7A01G469600 chr7A 75.304 575 111 20 1379 1932 665973693 665973129 1.750000e-61 246
4 TraesCS7A01G469600 chr7D 96.452 930 29 4 55 983 575668089 575667163 0.000000e+00 1531
5 TraesCS7A01G469600 chr7D 95.465 904 34 4 1379 2276 575667167 575666265 0.000000e+00 1435
6 TraesCS7A01G469600 chr7D 90.960 708 60 2 19 725 575596832 575596128 0.000000e+00 950
7 TraesCS7A01G469600 chr7D 98.496 399 6 0 981 1379 614366916 614367314 0.000000e+00 704
8 TraesCS7A01G469600 chr7D 73.427 572 124 18 1379 1932 575595477 575594916 2.980000e-44 189
9 TraesCS7A01G469600 chr7B 91.362 984 79 4 1 983 637589807 637588829 0.000000e+00 1341
10 TraesCS7A01G469600 chr7B 90.061 986 89 8 1 983 637495723 637494744 0.000000e+00 1269
11 TraesCS7A01G469600 chr7B 88.024 835 91 6 1 828 637364478 637363646 0.000000e+00 979
12 TraesCS7A01G469600 chr7B 88.774 775 83 4 1 772 637615187 637614414 0.000000e+00 946
13 TraesCS7A01G469600 chr7B 80.519 616 107 8 1379 1984 637588833 637588221 5.730000e-126 460
14 TraesCS7A01G469600 chr7B 82.560 539 73 12 1379 1910 637494748 637494224 2.670000e-124 455
15 TraesCS7A01G469600 chr7B 72.680 582 118 26 1379 1932 637613295 637612727 3.030000e-34 156
16 TraesCS7A01G469600 chr6A 98.000 400 7 1 981 1379 549052710 549053109 0.000000e+00 693
17 TraesCS7A01G469600 chr2A 96.734 398 11 2 981 1378 684419011 684419406 0.000000e+00 662
18 TraesCS7A01G469600 chr2A 83.616 354 56 2 294 646 695472870 695473222 4.690000e-87 331
19 TraesCS7A01G469600 chr2B 94.162 394 21 2 981 1373 686052406 686052798 1.160000e-167 599
20 TraesCS7A01G469600 chr2B 88.279 401 46 1 981 1380 474447920 474448320 1.580000e-131 479
21 TraesCS7A01G469600 chr3D 88.750 400 44 1 981 1379 20902245 20902644 2.630000e-134 488
22 TraesCS7A01G469600 chr1D 88.366 404 45 2 984 1385 482919131 482918728 3.400000e-133 484
23 TraesCS7A01G469600 chr5B 88.471 399 45 1 981 1378 546418372 546418770 4.400000e-132 481
24 TraesCS7A01G469600 chr2D 83.660 459 60 9 300 744 556052673 556053130 3.500000e-113 418


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G469600 chr7A 666178875 666181150 2275 True 4204.0 4204 100.0000 1 2276 1 chr7A.!!$R1 2275
1 TraesCS7A01G469600 chr7A 665973129 665975147 2018 True 607.0 968 82.2900 1 1932 2 chr7A.!!$R2 1931
2 TraesCS7A01G469600 chr7D 575666265 575668089 1824 True 1483.0 1531 95.9585 55 2276 2 chr7D.!!$R2 2221
3 TraesCS7A01G469600 chr7D 575594916 575596832 1916 True 569.5 950 82.1935 19 1932 2 chr7D.!!$R1 1913
4 TraesCS7A01G469600 chr7B 637363646 637364478 832 True 979.0 979 88.0240 1 828 1 chr7B.!!$R1 827
5 TraesCS7A01G469600 chr7B 637588221 637589807 1586 True 900.5 1341 85.9405 1 1984 2 chr7B.!!$R3 1983
6 TraesCS7A01G469600 chr7B 637494224 637495723 1499 True 862.0 1269 86.3105 1 1910 2 chr7B.!!$R2 1909
7 TraesCS7A01G469600 chr7B 637612727 637615187 2460 True 551.0 946 80.7270 1 1932 2 chr7B.!!$R4 1931

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
993 1920 0.389391 ACATACGGGCGGAGATCAAG 59.611 55.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1986 2941 0.818296 GGACTTCTAGCAGAGCCGAA 59.182 55.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 5.368145 TGGTCTATATGCACCAATCTTGAC 58.632 41.667 5.35 0.00 39.85 3.18
541 543 3.077359 CTCCAGCGAGAAAATCCTTGTT 58.923 45.455 0.00 0.00 38.52 2.83
549 551 4.976116 CGAGAAAATCCTTGTTGTTTCACC 59.024 41.667 0.00 0.00 33.37 4.02
790 818 7.110155 GTGTTCATAGTAGAAATCAAAGGGGA 58.890 38.462 0.00 0.00 0.00 4.81
794 822 4.903045 AGTAGAAATCAAAGGGGAACGA 57.097 40.909 0.00 0.00 0.00 3.85
797 825 6.246163 AGTAGAAATCAAAGGGGAACGAAAT 58.754 36.000 0.00 0.00 0.00 2.17
953 1877 6.259167 TGTGTAGGTGAATCAATTATTACCGC 59.741 38.462 0.00 0.00 31.64 5.68
983 1910 1.299926 CCAGCGAGTACATACGGGC 60.300 63.158 0.00 0.76 0.00 6.13
984 1911 1.657487 CAGCGAGTACATACGGGCG 60.657 63.158 0.00 0.00 35.45 6.13
985 1912 2.354305 GCGAGTACATACGGGCGG 60.354 66.667 0.00 0.00 0.00 6.13
986 1913 2.837883 GCGAGTACATACGGGCGGA 61.838 63.158 0.00 0.00 0.00 5.54
987 1914 1.281960 CGAGTACATACGGGCGGAG 59.718 63.158 0.00 0.00 0.00 4.63
988 1915 1.162181 CGAGTACATACGGGCGGAGA 61.162 60.000 0.00 0.00 0.00 3.71
989 1916 1.245732 GAGTACATACGGGCGGAGAT 58.754 55.000 0.00 0.00 0.00 2.75
990 1917 1.199558 GAGTACATACGGGCGGAGATC 59.800 57.143 0.00 0.00 0.00 2.75
991 1918 0.956633 GTACATACGGGCGGAGATCA 59.043 55.000 0.00 0.00 0.00 2.92
992 1919 1.338973 GTACATACGGGCGGAGATCAA 59.661 52.381 0.00 0.00 0.00 2.57
993 1920 0.389391 ACATACGGGCGGAGATCAAG 59.611 55.000 0.00 0.00 0.00 3.02
994 1921 0.673985 CATACGGGCGGAGATCAAGA 59.326 55.000 0.00 0.00 0.00 3.02
995 1922 0.674534 ATACGGGCGGAGATCAAGAC 59.325 55.000 0.00 0.00 0.00 3.01
996 1923 0.395311 TACGGGCGGAGATCAAGACT 60.395 55.000 0.00 0.00 0.00 3.24
997 1924 1.258445 ACGGGCGGAGATCAAGACTT 61.258 55.000 0.00 0.00 0.00 3.01
998 1925 0.807667 CGGGCGGAGATCAAGACTTG 60.808 60.000 9.03 9.03 0.00 3.16
999 1926 0.462759 GGGCGGAGATCAAGACTTGG 60.463 60.000 15.13 0.00 0.00 3.61
1000 1927 0.537188 GGCGGAGATCAAGACTTGGA 59.463 55.000 15.13 2.90 0.00 3.53
1001 1928 1.139853 GGCGGAGATCAAGACTTGGAT 59.860 52.381 15.13 7.47 0.00 3.41
1002 1929 2.208431 GCGGAGATCAAGACTTGGATG 58.792 52.381 15.13 1.75 0.00 3.51
1003 1930 2.831333 CGGAGATCAAGACTTGGATGG 58.169 52.381 15.13 0.00 0.00 3.51
1004 1931 2.484417 CGGAGATCAAGACTTGGATGGG 60.484 54.545 15.13 0.00 0.00 4.00
1005 1932 2.570135 GAGATCAAGACTTGGATGGGC 58.430 52.381 15.13 0.00 0.00 5.36
1006 1933 2.172293 GAGATCAAGACTTGGATGGGCT 59.828 50.000 15.13 4.20 0.00 5.19
1007 1934 2.579860 AGATCAAGACTTGGATGGGCTT 59.420 45.455 15.13 0.00 0.00 4.35
1008 1935 2.205022 TCAAGACTTGGATGGGCTTG 57.795 50.000 15.13 3.19 37.79 4.01
1009 1936 1.704628 TCAAGACTTGGATGGGCTTGA 59.295 47.619 15.13 7.77 41.67 3.02
1010 1937 1.815003 CAAGACTTGGATGGGCTTGAC 59.185 52.381 7.35 0.00 38.50 3.18
1011 1938 0.329596 AGACTTGGATGGGCTTGACC 59.670 55.000 0.00 0.00 37.93 4.02
1012 1939 0.038166 GACTTGGATGGGCTTGACCA 59.962 55.000 0.00 0.00 46.24 4.02
1013 1940 0.482446 ACTTGGATGGGCTTGACCAA 59.518 50.000 0.00 0.00 45.13 3.67
1014 1941 1.077663 ACTTGGATGGGCTTGACCAAT 59.922 47.619 0.00 0.00 45.13 3.16
1015 1942 1.479323 CTTGGATGGGCTTGACCAATG 59.521 52.381 0.00 0.00 45.13 2.82
1016 1943 0.409092 TGGATGGGCTTGACCAATGT 59.591 50.000 0.00 0.00 45.13 2.71
1017 1944 0.819582 GGATGGGCTTGACCAATGTG 59.180 55.000 0.00 0.00 45.13 3.21
1018 1945 0.819582 GATGGGCTTGACCAATGTGG 59.180 55.000 0.00 0.00 45.13 4.17
1019 1946 0.409092 ATGGGCTTGACCAATGTGGA 59.591 50.000 0.00 0.00 45.13 4.02
1020 1947 0.539438 TGGGCTTGACCAATGTGGAC 60.539 55.000 0.18 0.00 40.96 4.02
1021 1948 0.539438 GGGCTTGACCAATGTGGACA 60.539 55.000 0.18 0.00 40.96 4.02
1022 1949 1.549203 GGCTTGACCAATGTGGACAT 58.451 50.000 0.18 0.00 41.46 3.06
1023 1950 1.474077 GGCTTGACCAATGTGGACATC 59.526 52.381 0.18 0.00 41.46 3.06
1024 1951 1.131126 GCTTGACCAATGTGGACATCG 59.869 52.381 0.18 0.00 41.46 3.84
1025 1952 1.131126 CTTGACCAATGTGGACATCGC 59.869 52.381 0.18 0.00 41.46 4.58
1026 1953 0.676466 TGACCAATGTGGACATCGCC 60.676 55.000 0.18 0.00 40.96 5.54
1027 1954 1.705337 GACCAATGTGGACATCGCCG 61.705 60.000 0.18 0.00 40.96 6.46
1028 1955 1.449423 CCAATGTGGACATCGCCGA 60.449 57.895 0.00 0.00 40.96 5.54
1029 1956 1.705337 CCAATGTGGACATCGCCGAC 61.705 60.000 0.00 0.00 40.96 4.79
1030 1957 0.740868 CAATGTGGACATCGCCGACT 60.741 55.000 0.00 0.00 35.10 4.18
1031 1958 0.740868 AATGTGGACATCGCCGACTG 60.741 55.000 0.00 0.00 35.10 3.51
1032 1959 2.509336 GTGGACATCGCCGACTGG 60.509 66.667 0.00 0.00 38.77 4.00
1033 1960 2.678580 TGGACATCGCCGACTGGA 60.679 61.111 0.00 0.00 37.49 3.86
1034 1961 2.105128 GGACATCGCCGACTGGAG 59.895 66.667 0.00 0.00 37.49 3.86
1035 1962 2.583593 GACATCGCCGACTGGAGC 60.584 66.667 0.00 0.00 37.49 4.70
1036 1963 3.356639 GACATCGCCGACTGGAGCA 62.357 63.158 0.00 0.00 37.49 4.26
1037 1964 2.584418 CATCGCCGACTGGAGCAG 60.584 66.667 0.00 0.00 37.49 4.24
1038 1965 4.521062 ATCGCCGACTGGAGCAGC 62.521 66.667 0.00 0.00 37.49 5.25
1040 1967 4.749310 CGCCGACTGGAGCAGCTT 62.749 66.667 0.00 0.00 37.49 3.74
1041 1968 2.817396 GCCGACTGGAGCAGCTTC 60.817 66.667 0.00 0.00 37.49 3.86
1042 1969 2.507992 CCGACTGGAGCAGCTTCG 60.508 66.667 7.18 7.18 37.49 3.79
1043 1970 2.568612 CGACTGGAGCAGCTTCGA 59.431 61.111 8.30 0.00 33.71 3.71
1044 1971 1.803519 CGACTGGAGCAGCTTCGAC 60.804 63.158 8.30 0.00 33.71 4.20
1045 1972 1.290324 GACTGGAGCAGCTTCGACA 59.710 57.895 0.00 0.00 34.37 4.35
1046 1973 0.319900 GACTGGAGCAGCTTCGACAA 60.320 55.000 0.00 0.00 34.37 3.18
1047 1974 0.601311 ACTGGAGCAGCTTCGACAAC 60.601 55.000 0.00 0.00 34.37 3.32
1048 1975 1.621301 CTGGAGCAGCTTCGACAACG 61.621 60.000 0.00 0.00 41.26 4.10
1049 1976 1.664965 GGAGCAGCTTCGACAACGT 60.665 57.895 0.00 0.00 40.69 3.99
1050 1977 1.618640 GGAGCAGCTTCGACAACGTC 61.619 60.000 0.00 0.00 40.69 4.34
1051 1978 0.939577 GAGCAGCTTCGACAACGTCA 60.940 55.000 0.00 0.00 40.69 4.35
1052 1979 0.529773 AGCAGCTTCGACAACGTCAA 60.530 50.000 0.00 0.00 40.69 3.18
1053 1980 0.111089 GCAGCTTCGACAACGTCAAG 60.111 55.000 0.00 0.00 40.69 3.02
1054 1981 0.508641 CAGCTTCGACAACGTCAAGG 59.491 55.000 0.00 0.00 40.69 3.61
1055 1982 0.387929 AGCTTCGACAACGTCAAGGA 59.612 50.000 0.00 0.00 40.69 3.36
1056 1983 0.507358 GCTTCGACAACGTCAAGGAC 59.493 55.000 0.00 0.00 40.69 3.85
1057 1984 1.868519 GCTTCGACAACGTCAAGGACT 60.869 52.381 0.00 0.00 40.69 3.85
1058 1985 1.787155 CTTCGACAACGTCAAGGACTG 59.213 52.381 0.00 0.00 40.69 3.51
1059 1986 0.031585 TCGACAACGTCAAGGACTGG 59.968 55.000 0.00 0.00 40.69 4.00
1060 1987 0.249322 CGACAACGTCAAGGACTGGT 60.249 55.000 0.00 0.00 32.09 4.00
1061 1988 1.217882 GACAACGTCAAGGACTGGTG 58.782 55.000 0.00 0.00 32.96 4.17
1062 1989 0.179056 ACAACGTCAAGGACTGGTGG 60.179 55.000 0.00 0.00 31.76 4.61
1063 1990 1.227853 AACGTCAAGGACTGGTGGC 60.228 57.895 0.00 0.00 0.00 5.01
1064 1991 1.978455 AACGTCAAGGACTGGTGGCA 61.978 55.000 0.00 0.00 0.00 4.92
1065 1992 1.961277 CGTCAAGGACTGGTGGCAC 60.961 63.158 9.70 9.70 0.00 5.01
1066 1993 1.600916 GTCAAGGACTGGTGGCACC 60.601 63.158 29.75 29.75 39.22 5.01
1068 1995 1.898574 CAAGGACTGGTGGCACCAC 60.899 63.158 34.67 24.98 44.79 4.16
1069 1996 2.382770 AAGGACTGGTGGCACCACA 61.383 57.895 34.67 15.98 44.79 4.17
1070 1997 1.719063 AAGGACTGGTGGCACCACAT 61.719 55.000 34.67 25.04 44.79 3.21
1071 1998 1.973281 GGACTGGTGGCACCACATG 60.973 63.158 34.67 26.32 44.79 3.21
1072 1999 1.973281 GACTGGTGGCACCACATGG 60.973 63.158 34.67 25.96 44.79 3.66
1083 2010 4.001248 CACATGGTGGGCGTCAAT 57.999 55.556 0.00 0.00 0.00 2.57
1084 2011 1.507630 CACATGGTGGGCGTCAATG 59.492 57.895 0.00 0.00 0.00 2.82
1085 2012 2.342650 ACATGGTGGGCGTCAATGC 61.343 57.895 0.00 0.00 0.00 3.56
1094 2021 3.317608 GCGTCAATGCCAATGTGAG 57.682 52.632 0.00 0.00 0.00 3.51
1095 2022 0.804364 GCGTCAATGCCAATGTGAGA 59.196 50.000 0.00 0.00 0.00 3.27
1096 2023 1.199789 GCGTCAATGCCAATGTGAGAA 59.800 47.619 0.00 0.00 0.00 2.87
1097 2024 2.351641 GCGTCAATGCCAATGTGAGAAA 60.352 45.455 0.00 0.00 0.00 2.52
1098 2025 3.495193 CGTCAATGCCAATGTGAGAAAG 58.505 45.455 0.00 0.00 0.00 2.62
1099 2026 3.671433 CGTCAATGCCAATGTGAGAAAGG 60.671 47.826 0.00 0.00 0.00 3.11
1100 2027 2.827322 TCAATGCCAATGTGAGAAAGGG 59.173 45.455 0.00 0.00 0.00 3.95
1101 2028 1.188863 ATGCCAATGTGAGAAAGGGC 58.811 50.000 0.00 0.00 41.70 5.19
1102 2029 0.899717 TGCCAATGTGAGAAAGGGCC 60.900 55.000 0.00 0.00 40.64 5.80
1103 2030 0.613012 GCCAATGTGAGAAAGGGCCT 60.613 55.000 0.00 0.00 35.42 5.19
1104 2031 1.467920 CCAATGTGAGAAAGGGCCTC 58.532 55.000 6.46 0.00 0.00 4.70
1105 2032 1.089920 CAATGTGAGAAAGGGCCTCG 58.910 55.000 6.46 0.00 33.51 4.63
1106 2033 0.678048 AATGTGAGAAAGGGCCTCGC 60.678 55.000 6.46 1.02 40.51 5.03
1107 2034 2.347490 GTGAGAAAGGGCCTCGCA 59.653 61.111 6.46 0.00 40.02 5.10
1108 2035 1.078143 GTGAGAAAGGGCCTCGCAT 60.078 57.895 6.46 0.00 40.02 4.73
1109 2036 1.092345 GTGAGAAAGGGCCTCGCATC 61.092 60.000 6.46 3.64 40.02 3.91
1110 2037 1.267574 TGAGAAAGGGCCTCGCATCT 61.268 55.000 6.46 8.73 33.51 2.90
1111 2038 0.813210 GAGAAAGGGCCTCGCATCTG 60.813 60.000 6.46 0.00 0.00 2.90
1112 2039 1.078143 GAAAGGGCCTCGCATCTGT 60.078 57.895 6.46 0.00 0.00 3.41
1113 2040 1.078143 AAAGGGCCTCGCATCTGTC 60.078 57.895 6.46 0.00 0.00 3.51
1114 2041 2.859273 AAAGGGCCTCGCATCTGTCG 62.859 60.000 6.46 0.00 0.00 4.35
1115 2042 4.148825 GGGCCTCGCATCTGTCGT 62.149 66.667 0.84 0.00 0.00 4.34
1116 2043 2.583593 GGCCTCGCATCTGTCGTC 60.584 66.667 0.00 0.00 0.00 4.20
1117 2044 2.181777 GCCTCGCATCTGTCGTCA 59.818 61.111 0.00 0.00 0.00 4.35
1118 2045 1.227089 GCCTCGCATCTGTCGTCAT 60.227 57.895 0.00 0.00 0.00 3.06
1119 2046 1.485838 GCCTCGCATCTGTCGTCATG 61.486 60.000 0.00 0.00 0.00 3.07
1120 2047 0.179127 CCTCGCATCTGTCGTCATGT 60.179 55.000 0.00 0.00 0.00 3.21
1121 2048 1.633561 CTCGCATCTGTCGTCATGTT 58.366 50.000 0.00 0.00 0.00 2.71
1122 2049 1.322637 CTCGCATCTGTCGTCATGTTG 59.677 52.381 0.00 0.00 0.00 3.33
1123 2050 0.371301 CGCATCTGTCGTCATGTTGG 59.629 55.000 0.00 0.00 0.00 3.77
1124 2051 1.442769 GCATCTGTCGTCATGTTGGT 58.557 50.000 0.00 0.00 0.00 3.67
1125 2052 1.806542 GCATCTGTCGTCATGTTGGTT 59.193 47.619 0.00 0.00 0.00 3.67
1126 2053 2.226437 GCATCTGTCGTCATGTTGGTTT 59.774 45.455 0.00 0.00 0.00 3.27
1127 2054 3.667960 GCATCTGTCGTCATGTTGGTTTC 60.668 47.826 0.00 0.00 0.00 2.78
1128 2055 3.186702 TCTGTCGTCATGTTGGTTTCA 57.813 42.857 0.00 0.00 0.00 2.69
1129 2056 3.738982 TCTGTCGTCATGTTGGTTTCAT 58.261 40.909 0.00 0.00 0.00 2.57
1130 2057 3.498018 TCTGTCGTCATGTTGGTTTCATG 59.502 43.478 0.00 0.00 42.53 3.07
1131 2058 2.551887 TGTCGTCATGTTGGTTTCATGG 59.448 45.455 6.15 0.00 41.79 3.66
1132 2059 2.095263 GTCGTCATGTTGGTTTCATGGG 60.095 50.000 6.15 0.63 41.79 4.00
1133 2060 2.158559 CGTCATGTTGGTTTCATGGGA 58.841 47.619 6.15 0.00 41.79 4.37
1134 2061 2.162208 CGTCATGTTGGTTTCATGGGAG 59.838 50.000 6.15 0.00 41.79 4.30
1135 2062 3.420893 GTCATGTTGGTTTCATGGGAGA 58.579 45.455 6.15 0.00 41.79 3.71
1136 2063 4.019174 GTCATGTTGGTTTCATGGGAGAT 58.981 43.478 6.15 0.00 41.79 2.75
1137 2064 4.463891 GTCATGTTGGTTTCATGGGAGATT 59.536 41.667 6.15 0.00 41.79 2.40
1138 2065 5.047092 GTCATGTTGGTTTCATGGGAGATTT 60.047 40.000 6.15 0.00 41.79 2.17
1139 2066 4.870123 TGTTGGTTTCATGGGAGATTTG 57.130 40.909 0.00 0.00 0.00 2.32
1140 2067 3.577848 TGTTGGTTTCATGGGAGATTTGG 59.422 43.478 0.00 0.00 0.00 3.28
1141 2068 3.824001 TGGTTTCATGGGAGATTTGGA 57.176 42.857 0.00 0.00 0.00 3.53
1142 2069 4.125124 TGGTTTCATGGGAGATTTGGAA 57.875 40.909 0.00 0.00 0.00 3.53
1143 2070 3.831911 TGGTTTCATGGGAGATTTGGAAC 59.168 43.478 0.00 0.00 0.00 3.62
1144 2071 3.119495 GGTTTCATGGGAGATTTGGAACG 60.119 47.826 0.00 0.00 30.95 3.95
1145 2072 3.712016 TTCATGGGAGATTTGGAACGA 57.288 42.857 0.00 0.00 0.00 3.85
1146 2073 3.266510 TCATGGGAGATTTGGAACGAG 57.733 47.619 0.00 0.00 0.00 4.18
1147 2074 1.672881 CATGGGAGATTTGGAACGAGC 59.327 52.381 0.00 0.00 0.00 5.03
1148 2075 0.391130 TGGGAGATTTGGAACGAGCG 60.391 55.000 0.00 0.00 0.00 5.03
1149 2076 1.090052 GGGAGATTTGGAACGAGCGG 61.090 60.000 0.00 0.00 0.00 5.52
1150 2077 0.108329 GGAGATTTGGAACGAGCGGA 60.108 55.000 0.00 0.00 0.00 5.54
1151 2078 1.674817 GGAGATTTGGAACGAGCGGAA 60.675 52.381 0.00 0.00 0.00 4.30
1152 2079 1.393883 GAGATTTGGAACGAGCGGAAC 59.606 52.381 0.00 0.00 0.00 3.62
1172 2099 2.607187 CGCGAGAGTGTTTAGGAATGT 58.393 47.619 0.00 0.00 36.71 2.71
1173 2100 2.345641 CGCGAGAGTGTTTAGGAATGTG 59.654 50.000 0.00 0.00 36.71 3.21
1174 2101 3.326747 GCGAGAGTGTTTAGGAATGTGT 58.673 45.455 0.00 0.00 0.00 3.72
1175 2102 3.368236 GCGAGAGTGTTTAGGAATGTGTC 59.632 47.826 0.00 0.00 0.00 3.67
1184 2111 2.799176 GGAATGTGTCCTCCATGCC 58.201 57.895 0.00 0.00 43.98 4.40
1185 2112 0.034186 GGAATGTGTCCTCCATGCCA 60.034 55.000 0.00 0.00 43.98 4.92
1186 2113 1.410648 GGAATGTGTCCTCCATGCCAT 60.411 52.381 0.00 0.00 43.98 4.40
1187 2114 2.158623 GGAATGTGTCCTCCATGCCATA 60.159 50.000 0.00 0.00 43.98 2.74
1188 2115 3.499202 GGAATGTGTCCTCCATGCCATAT 60.499 47.826 0.00 0.00 43.98 1.78
1189 2116 2.643995 TGTGTCCTCCATGCCATATG 57.356 50.000 0.00 0.00 0.00 1.78
1190 2117 1.845791 TGTGTCCTCCATGCCATATGT 59.154 47.619 1.24 0.00 0.00 2.29
1191 2118 3.044894 TGTGTCCTCCATGCCATATGTA 58.955 45.455 1.24 0.00 0.00 2.29
1192 2119 3.457749 TGTGTCCTCCATGCCATATGTAA 59.542 43.478 1.24 0.00 0.00 2.41
1193 2120 4.104579 TGTGTCCTCCATGCCATATGTAAT 59.895 41.667 1.24 0.00 0.00 1.89
1194 2121 4.697352 GTGTCCTCCATGCCATATGTAATC 59.303 45.833 1.24 0.00 0.00 1.75
1195 2122 4.350520 TGTCCTCCATGCCATATGTAATCA 59.649 41.667 1.24 0.00 0.00 2.57
1196 2123 4.697352 GTCCTCCATGCCATATGTAATCAC 59.303 45.833 1.24 0.00 0.00 3.06
1197 2124 4.350520 TCCTCCATGCCATATGTAATCACA 59.649 41.667 1.24 0.00 39.52 3.58
1199 2126 5.356190 CCTCCATGCCATATGTAATCACATC 59.644 44.000 1.24 0.00 44.42 3.06
1200 2127 6.130692 TCCATGCCATATGTAATCACATCT 57.869 37.500 1.24 0.00 44.42 2.90
1201 2128 7.256494 TCCATGCCATATGTAATCACATCTA 57.744 36.000 1.24 0.00 44.42 1.98
1202 2129 7.333323 TCCATGCCATATGTAATCACATCTAG 58.667 38.462 1.24 0.00 44.42 2.43
1203 2130 7.180766 TCCATGCCATATGTAATCACATCTAGA 59.819 37.037 1.24 0.00 44.42 2.43
1204 2131 7.825761 CCATGCCATATGTAATCACATCTAGAA 59.174 37.037 0.00 0.00 44.42 2.10
1205 2132 9.392259 CATGCCATATGTAATCACATCTAGAAT 57.608 33.333 0.00 0.00 44.42 2.40
1206 2133 9.970553 ATGCCATATGTAATCACATCTAGAATT 57.029 29.630 0.00 0.00 44.42 2.17
1213 2140 9.698309 ATGTAATCACATCTAGAATTAAGACCG 57.302 33.333 0.00 0.00 41.75 4.79
1214 2141 8.909923 TGTAATCACATCTAGAATTAAGACCGA 58.090 33.333 0.00 0.00 0.00 4.69
1215 2142 9.745880 GTAATCACATCTAGAATTAAGACCGAA 57.254 33.333 0.00 0.00 0.00 4.30
1216 2143 8.879342 AATCACATCTAGAATTAAGACCGAAG 57.121 34.615 0.00 0.00 0.00 3.79
1217 2144 6.273825 TCACATCTAGAATTAAGACCGAAGC 58.726 40.000 0.00 0.00 0.00 3.86
1218 2145 5.463724 CACATCTAGAATTAAGACCGAAGCC 59.536 44.000 0.00 0.00 0.00 4.35
1219 2146 5.128827 ACATCTAGAATTAAGACCGAAGCCA 59.871 40.000 0.00 0.00 0.00 4.75
1220 2147 5.263968 TCTAGAATTAAGACCGAAGCCAG 57.736 43.478 0.00 0.00 0.00 4.85
1221 2148 3.268023 AGAATTAAGACCGAAGCCAGG 57.732 47.619 0.00 0.00 0.00 4.45
1222 2149 1.671328 GAATTAAGACCGAAGCCAGGC 59.329 52.381 1.84 1.84 0.00 4.85
1223 2150 0.912486 ATTAAGACCGAAGCCAGGCT 59.088 50.000 8.70 8.70 42.56 4.58
1234 2161 2.604382 CCAGGCTTTGGGGGTTGG 60.604 66.667 0.00 0.00 43.75 3.77
1235 2162 3.313524 CAGGCTTTGGGGGTTGGC 61.314 66.667 0.00 0.00 0.00 4.52
1236 2163 4.994756 AGGCTTTGGGGGTTGGCG 62.995 66.667 0.00 0.00 0.00 5.69
1251 2178 4.455906 GCGGGGGCCAAGCATTTG 62.456 66.667 16.10 0.00 0.00 2.32
1252 2179 2.679642 CGGGGGCCAAGCATTTGA 60.680 61.111 4.39 0.00 36.36 2.69
1253 2180 2.713967 CGGGGGCCAAGCATTTGAG 61.714 63.158 4.39 0.00 36.36 3.02
1254 2181 1.610379 GGGGGCCAAGCATTTGAGT 60.610 57.895 4.39 0.00 36.36 3.41
1255 2182 1.194121 GGGGGCCAAGCATTTGAGTT 61.194 55.000 4.39 0.00 36.36 3.01
1256 2183 0.247460 GGGGCCAAGCATTTGAGTTC 59.753 55.000 4.39 0.00 36.36 3.01
1257 2184 1.260544 GGGCCAAGCATTTGAGTTCT 58.739 50.000 4.39 0.00 36.36 3.01
1258 2185 1.203287 GGGCCAAGCATTTGAGTTCTC 59.797 52.381 4.39 0.00 36.36 2.87
1259 2186 2.165998 GGCCAAGCATTTGAGTTCTCT 58.834 47.619 0.00 0.00 36.36 3.10
1260 2187 2.560105 GGCCAAGCATTTGAGTTCTCTT 59.440 45.455 0.00 0.00 36.36 2.85
1261 2188 3.758554 GGCCAAGCATTTGAGTTCTCTTA 59.241 43.478 0.00 0.00 36.36 2.10
1262 2189 4.400567 GGCCAAGCATTTGAGTTCTCTTAT 59.599 41.667 0.00 0.00 36.36 1.73
1263 2190 5.590259 GGCCAAGCATTTGAGTTCTCTTATA 59.410 40.000 0.00 0.00 36.36 0.98
1264 2191 6.458888 GGCCAAGCATTTGAGTTCTCTTATAC 60.459 42.308 0.00 0.00 36.36 1.47
1265 2192 6.458888 GCCAAGCATTTGAGTTCTCTTATACC 60.459 42.308 1.53 0.00 36.36 2.73
1266 2193 6.238211 CCAAGCATTTGAGTTCTCTTATACCG 60.238 42.308 1.53 0.00 36.36 4.02
1267 2194 4.811557 AGCATTTGAGTTCTCTTATACCGC 59.188 41.667 1.53 0.00 0.00 5.68
1268 2195 4.318121 GCATTTGAGTTCTCTTATACCGCG 60.318 45.833 0.00 0.00 0.00 6.46
1269 2196 4.707030 TTTGAGTTCTCTTATACCGCGA 57.293 40.909 8.23 0.00 0.00 5.87
1270 2197 3.965292 TGAGTTCTCTTATACCGCGAG 57.035 47.619 8.23 0.00 0.00 5.03
1271 2198 3.538591 TGAGTTCTCTTATACCGCGAGA 58.461 45.455 8.23 0.00 32.36 4.04
1272 2199 3.560481 TGAGTTCTCTTATACCGCGAGAG 59.440 47.826 8.23 11.90 38.57 3.20
1273 2200 3.543665 AGTTCTCTTATACCGCGAGAGT 58.456 45.455 18.00 6.69 38.41 3.24
1274 2201 4.701765 AGTTCTCTTATACCGCGAGAGTA 58.298 43.478 18.00 8.60 38.41 2.59
1275 2202 4.751098 AGTTCTCTTATACCGCGAGAGTAG 59.249 45.833 18.00 6.45 38.41 2.57
1276 2203 4.597404 TCTCTTATACCGCGAGAGTAGA 57.403 45.455 18.00 9.87 38.41 2.59
1277 2204 4.305769 TCTCTTATACCGCGAGAGTAGAC 58.694 47.826 18.00 0.00 38.41 2.59
1278 2205 4.039004 TCTCTTATACCGCGAGAGTAGACT 59.961 45.833 18.00 0.00 38.41 3.24
1279 2206 4.701765 TCTTATACCGCGAGAGTAGACTT 58.298 43.478 8.23 0.00 0.00 3.01
1280 2207 5.121811 TCTTATACCGCGAGAGTAGACTTT 58.878 41.667 8.23 0.00 0.00 2.66
1281 2208 3.967203 ATACCGCGAGAGTAGACTTTC 57.033 47.619 8.23 0.00 0.00 2.62
1291 2218 4.749976 AGAGTAGACTTTCGAATTGAGGC 58.250 43.478 0.00 0.00 0.00 4.70
1292 2219 3.863041 AGTAGACTTTCGAATTGAGGCC 58.137 45.455 0.00 0.00 0.00 5.19
1293 2220 1.726853 AGACTTTCGAATTGAGGCCG 58.273 50.000 0.00 0.00 0.00 6.13
1294 2221 1.002087 AGACTTTCGAATTGAGGCCGT 59.998 47.619 0.00 0.00 0.00 5.68
1295 2222 1.393883 GACTTTCGAATTGAGGCCGTC 59.606 52.381 0.00 0.00 0.00 4.79
1296 2223 0.727398 CTTTCGAATTGAGGCCGTCC 59.273 55.000 0.00 0.00 0.00 4.79
1297 2224 0.035598 TTTCGAATTGAGGCCGTCCA 59.964 50.000 0.00 0.00 33.74 4.02
1298 2225 0.251916 TTCGAATTGAGGCCGTCCAT 59.748 50.000 0.00 0.00 33.74 3.41
1299 2226 0.461870 TCGAATTGAGGCCGTCCATG 60.462 55.000 0.00 0.00 33.74 3.66
1300 2227 1.439353 CGAATTGAGGCCGTCCATGG 61.439 60.000 4.97 4.97 33.74 3.66
1301 2228 0.107214 GAATTGAGGCCGTCCATGGA 60.107 55.000 11.44 11.44 33.74 3.41
1302 2229 0.394352 AATTGAGGCCGTCCATGGAC 60.394 55.000 31.59 31.59 41.40 4.02
1310 2237 2.183555 GTCCATGGACGGTCGGTC 59.816 66.667 28.52 3.94 45.31 4.79
1320 2247 2.883574 GACGGTCGGTCATGTATTTCA 58.116 47.619 5.71 0.00 45.36 2.69
1321 2248 3.255725 GACGGTCGGTCATGTATTTCAA 58.744 45.455 5.71 0.00 45.36 2.69
1322 2249 3.666274 ACGGTCGGTCATGTATTTCAAA 58.334 40.909 0.00 0.00 0.00 2.69
1323 2250 4.066490 ACGGTCGGTCATGTATTTCAAAA 58.934 39.130 0.00 0.00 0.00 2.44
1324 2251 4.083696 ACGGTCGGTCATGTATTTCAAAAC 60.084 41.667 0.00 0.00 0.00 2.43
1325 2252 4.153475 CGGTCGGTCATGTATTTCAAAACT 59.847 41.667 0.00 0.00 0.00 2.66
1326 2253 5.628134 GGTCGGTCATGTATTTCAAAACTC 58.372 41.667 0.00 0.00 0.00 3.01
1327 2254 5.411669 GGTCGGTCATGTATTTCAAAACTCT 59.588 40.000 0.00 0.00 0.00 3.24
1328 2255 6.072673 GGTCGGTCATGTATTTCAAAACTCTT 60.073 38.462 0.00 0.00 0.00 2.85
1329 2256 7.015877 GTCGGTCATGTATTTCAAAACTCTTC 58.984 38.462 0.00 0.00 0.00 2.87
1330 2257 6.934645 TCGGTCATGTATTTCAAAACTCTTCT 59.065 34.615 0.00 0.00 0.00 2.85
1331 2258 7.444183 TCGGTCATGTATTTCAAAACTCTTCTT 59.556 33.333 0.00 0.00 0.00 2.52
1332 2259 8.717821 CGGTCATGTATTTCAAAACTCTTCTTA 58.282 33.333 0.00 0.00 0.00 2.10
1348 2275 8.900983 ACTCTTCTTAATTAATGAGATGAGGC 57.099 34.615 27.23 0.00 41.92 4.70
1349 2276 8.489489 ACTCTTCTTAATTAATGAGATGAGGCA 58.511 33.333 27.23 8.22 41.92 4.75
1350 2277 9.334947 CTCTTCTTAATTAATGAGATGAGGCAA 57.665 33.333 22.19 3.87 37.73 4.52
1351 2278 9.685276 TCTTCTTAATTAATGAGATGAGGCAAA 57.315 29.630 0.00 0.00 0.00 3.68
1352 2279 9.947669 CTTCTTAATTAATGAGATGAGGCAAAG 57.052 33.333 0.00 0.00 0.00 2.77
1353 2280 7.934457 TCTTAATTAATGAGATGAGGCAAAGC 58.066 34.615 0.00 0.00 0.00 3.51
1354 2281 7.776969 TCTTAATTAATGAGATGAGGCAAAGCT 59.223 33.333 0.00 0.00 0.00 3.74
1355 2282 6.786967 AATTAATGAGATGAGGCAAAGCTT 57.213 33.333 0.00 0.00 0.00 3.74
1356 2283 6.786967 ATTAATGAGATGAGGCAAAGCTTT 57.213 33.333 5.69 5.69 0.00 3.51
1357 2284 6.594788 TTAATGAGATGAGGCAAAGCTTTT 57.405 33.333 9.53 0.00 0.00 2.27
1358 2285 3.928727 TGAGATGAGGCAAAGCTTTTG 57.071 42.857 9.53 6.62 0.00 2.44
1369 2296 4.533566 GCTTTTGCCTCCGTTTCG 57.466 55.556 0.00 0.00 40.15 3.46
1370 2297 1.946267 GCTTTTGCCTCCGTTTCGA 59.054 52.632 0.00 0.00 40.15 3.71
1371 2298 0.309612 GCTTTTGCCTCCGTTTCGAA 59.690 50.000 0.00 0.00 40.15 3.71
1372 2299 1.268845 GCTTTTGCCTCCGTTTCGAAA 60.269 47.619 6.47 6.47 40.15 3.46
1373 2300 2.796735 GCTTTTGCCTCCGTTTCGAAAA 60.797 45.455 13.10 0.00 40.15 2.29
1374 2301 3.440228 CTTTTGCCTCCGTTTCGAAAAA 58.560 40.909 13.10 0.00 0.00 1.94
1414 2341 1.435925 CATGATGGCAAGCGCATGT 59.564 52.632 14.80 0.00 41.24 3.21
1426 2353 0.588252 GCGCATGTATAACCAGGCAG 59.412 55.000 0.30 0.00 41.97 4.85
1509 2439 2.404789 CATTGGCGCATGTCCGTC 59.595 61.111 10.83 0.00 0.00 4.79
1524 2454 6.616471 GCATGTCCGTCTGTCATTTATATTCG 60.616 42.308 0.00 0.00 0.00 3.34
1702 2655 0.395586 AGTGCAAAGTGGCAAGTCCA 60.396 50.000 0.00 0.00 46.93 4.02
1752 2705 2.474816 GTGAAGAAGTCGCACAGTCTT 58.525 47.619 0.00 0.00 36.70 3.01
1765 2718 2.744202 CACAGTCTTATCCACAGTTGGC 59.256 50.000 0.00 0.00 43.56 4.52
1797 2750 1.000866 GAAATTGCTGGAGGGGCCT 59.999 57.895 0.84 0.00 37.63 5.19
1986 2941 4.097892 AGAACCGTTTTGCTTCACTTGAAT 59.902 37.500 0.00 0.00 33.01 2.57
2115 3071 4.387026 AAGACTTGTTGGATCCATTGGA 57.613 40.909 17.06 8.08 35.55 3.53
2213 3174 2.944349 GACAAGGGTACGGTGTGAAAAA 59.056 45.455 0.00 0.00 0.00 1.94
2244 3205 1.192146 TGCTAGTGGAGGTGTGGGAC 61.192 60.000 0.00 0.00 0.00 4.46
2272 3233 6.746745 ACATATAAGGTGGGTTGTTTTACG 57.253 37.500 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 0.381801 AAGTTGCTGACTTTGGTGCG 59.618 50.000 0.94 0.00 46.34 5.34
541 543 1.024271 GTGAAGCTGCAGGTGAAACA 58.976 50.000 20.97 14.16 39.98 2.83
549 551 7.643528 TTAATATTATCGAGTGAAGCTGCAG 57.356 36.000 10.11 10.11 0.00 4.41
628 630 4.023279 CGTAGATGGAGAAGAGACATCCAG 60.023 50.000 0.00 0.00 45.89 3.86
898 1820 6.320494 TGTTTGCAGTTAATATTTCCGTGT 57.680 33.333 0.00 0.00 0.00 4.49
929 1851 6.259167 TGCGGTAATAATTGATTCACCTACAC 59.741 38.462 0.00 0.00 0.00 2.90
953 1877 4.081030 CGCTGGCTGCTCACGTTG 62.081 66.667 14.58 0.00 40.11 4.10
983 1910 2.484417 CCCATCCAAGTCTTGATCTCCG 60.484 54.545 14.42 0.00 0.00 4.63
984 1911 2.747799 GCCCATCCAAGTCTTGATCTCC 60.748 54.545 14.42 0.00 0.00 3.71
985 1912 2.172293 AGCCCATCCAAGTCTTGATCTC 59.828 50.000 14.42 0.00 0.00 2.75
986 1913 2.203584 AGCCCATCCAAGTCTTGATCT 58.796 47.619 14.42 0.00 0.00 2.75
987 1914 2.686915 CAAGCCCATCCAAGTCTTGATC 59.313 50.000 14.42 0.00 37.03 2.92
988 1915 2.309755 TCAAGCCCATCCAAGTCTTGAT 59.690 45.455 14.42 3.29 38.43 2.57
989 1916 1.704628 TCAAGCCCATCCAAGTCTTGA 59.295 47.619 14.42 0.96 40.28 3.02
990 1917 1.815003 GTCAAGCCCATCCAAGTCTTG 59.185 52.381 5.53 5.53 36.42 3.02
991 1918 1.272147 GGTCAAGCCCATCCAAGTCTT 60.272 52.381 0.00 0.00 0.00 3.01
992 1919 0.329596 GGTCAAGCCCATCCAAGTCT 59.670 55.000 0.00 0.00 0.00 3.24
993 1920 0.038166 TGGTCAAGCCCATCCAAGTC 59.962 55.000 0.00 0.00 36.04 3.01
994 1921 0.482446 TTGGTCAAGCCCATCCAAGT 59.518 50.000 0.00 0.00 35.42 3.16
995 1922 1.479323 CATTGGTCAAGCCCATCCAAG 59.521 52.381 0.00 0.00 42.09 3.61
996 1923 1.203162 ACATTGGTCAAGCCCATCCAA 60.203 47.619 0.00 0.00 42.81 3.53
997 1924 0.409092 ACATTGGTCAAGCCCATCCA 59.591 50.000 0.00 0.00 33.60 3.41
998 1925 0.819582 CACATTGGTCAAGCCCATCC 59.180 55.000 0.00 0.00 33.60 3.51
999 1926 0.819582 CCACATTGGTCAAGCCCATC 59.180 55.000 0.00 0.00 33.60 3.51
1000 1927 0.409092 TCCACATTGGTCAAGCCCAT 59.591 50.000 0.00 0.00 39.03 4.00
1001 1928 0.539438 GTCCACATTGGTCAAGCCCA 60.539 55.000 0.00 0.00 39.03 5.36
1002 1929 0.539438 TGTCCACATTGGTCAAGCCC 60.539 55.000 0.00 0.00 39.03 5.19
1003 1930 1.474077 GATGTCCACATTGGTCAAGCC 59.526 52.381 0.00 0.00 38.92 4.35
1004 1931 1.131126 CGATGTCCACATTGGTCAAGC 59.869 52.381 0.00 0.00 38.92 4.01
1005 1932 1.131126 GCGATGTCCACATTGGTCAAG 59.869 52.381 8.70 0.00 38.92 3.02
1006 1933 1.164411 GCGATGTCCACATTGGTCAA 58.836 50.000 8.70 0.00 38.92 3.18
1007 1934 0.676466 GGCGATGTCCACATTGGTCA 60.676 55.000 8.70 0.00 39.71 4.02
1008 1935 1.705337 CGGCGATGTCCACATTGGTC 61.705 60.000 0.00 0.00 39.03 4.02
1009 1936 1.745115 CGGCGATGTCCACATTGGT 60.745 57.895 0.00 0.00 39.03 3.67
1010 1937 1.449423 TCGGCGATGTCCACATTGG 60.449 57.895 4.99 0.00 38.03 3.16
1011 1938 0.740868 AGTCGGCGATGTCCACATTG 60.741 55.000 14.79 2.87 40.05 2.82
1012 1939 0.740868 CAGTCGGCGATGTCCACATT 60.741 55.000 14.79 0.00 36.57 2.71
1013 1940 1.153568 CAGTCGGCGATGTCCACAT 60.154 57.895 14.79 0.00 39.70 3.21
1014 1941 2.261361 CAGTCGGCGATGTCCACA 59.739 61.111 14.79 0.00 0.00 4.17
1015 1942 2.509336 CCAGTCGGCGATGTCCAC 60.509 66.667 14.79 0.00 0.00 4.02
1016 1943 2.678580 TCCAGTCGGCGATGTCCA 60.679 61.111 14.79 0.00 0.00 4.02
1017 1944 2.105128 CTCCAGTCGGCGATGTCC 59.895 66.667 14.79 0.00 0.00 4.02
1018 1945 2.583593 GCTCCAGTCGGCGATGTC 60.584 66.667 14.79 0.00 0.00 3.06
1019 1946 3.362399 CTGCTCCAGTCGGCGATGT 62.362 63.158 14.79 0.00 0.00 3.06
1020 1947 2.584418 CTGCTCCAGTCGGCGATG 60.584 66.667 14.79 12.32 0.00 3.84
1021 1948 4.521062 GCTGCTCCAGTCGGCGAT 62.521 66.667 14.79 0.00 33.43 4.58
1023 1950 4.749310 AAGCTGCTCCAGTCGGCG 62.749 66.667 1.00 0.00 40.59 6.46
1024 1951 2.817396 GAAGCTGCTCCAGTCGGC 60.817 66.667 1.00 0.00 33.43 5.54
1025 1952 2.507992 CGAAGCTGCTCCAGTCGG 60.508 66.667 12.36 0.00 33.43 4.79
1026 1953 1.803519 GTCGAAGCTGCTCCAGTCG 60.804 63.158 13.66 13.66 33.35 4.18
1027 1954 0.319900 TTGTCGAAGCTGCTCCAGTC 60.320 55.000 1.00 0.00 33.43 3.51
1028 1955 0.601311 GTTGTCGAAGCTGCTCCAGT 60.601 55.000 1.00 0.00 33.43 4.00
1029 1956 1.621301 CGTTGTCGAAGCTGCTCCAG 61.621 60.000 1.00 0.00 39.71 3.86
1030 1957 1.664649 CGTTGTCGAAGCTGCTCCA 60.665 57.895 1.00 0.00 39.71 3.86
1031 1958 1.618640 GACGTTGTCGAAGCTGCTCC 61.619 60.000 1.00 0.00 40.62 4.70
1032 1959 0.939577 TGACGTTGTCGAAGCTGCTC 60.940 55.000 1.00 0.00 40.62 4.26
1033 1960 0.529773 TTGACGTTGTCGAAGCTGCT 60.530 50.000 0.00 0.00 40.62 4.24
1034 1961 0.111089 CTTGACGTTGTCGAAGCTGC 60.111 55.000 0.00 0.00 40.62 5.25
1035 1962 0.508641 CCTTGACGTTGTCGAAGCTG 59.491 55.000 0.00 0.00 40.62 4.24
1036 1963 0.387929 TCCTTGACGTTGTCGAAGCT 59.612 50.000 0.00 0.00 40.62 3.74
1037 1964 0.507358 GTCCTTGACGTTGTCGAAGC 59.493 55.000 0.00 0.00 40.62 3.86
1038 1965 1.787155 CAGTCCTTGACGTTGTCGAAG 59.213 52.381 0.00 0.00 37.67 3.79
1039 1966 1.537348 CCAGTCCTTGACGTTGTCGAA 60.537 52.381 0.00 0.00 37.67 3.71
1040 1967 0.031585 CCAGTCCTTGACGTTGTCGA 59.968 55.000 0.00 0.00 37.67 4.20
1041 1968 0.249322 ACCAGTCCTTGACGTTGTCG 60.249 55.000 0.00 0.00 37.67 4.35
1042 1969 1.217882 CACCAGTCCTTGACGTTGTC 58.782 55.000 0.00 0.00 37.67 3.18
1043 1970 0.179056 CCACCAGTCCTTGACGTTGT 60.179 55.000 0.00 0.00 37.67 3.32
1044 1971 1.507141 GCCACCAGTCCTTGACGTTG 61.507 60.000 0.00 0.00 37.67 4.10
1045 1972 1.227853 GCCACCAGTCCTTGACGTT 60.228 57.895 0.00 0.00 37.67 3.99
1046 1973 2.426023 GCCACCAGTCCTTGACGT 59.574 61.111 0.00 0.00 37.67 4.34
1047 1974 1.961277 GTGCCACCAGTCCTTGACG 60.961 63.158 0.00 0.00 37.67 4.35
1048 1975 1.600916 GGTGCCACCAGTCCTTGAC 60.601 63.158 9.55 0.00 38.42 3.18
1049 1976 2.075566 TGGTGCCACCAGTCCTTGA 61.076 57.895 13.83 0.00 44.79 3.02
1050 1977 2.515398 TGGTGCCACCAGTCCTTG 59.485 61.111 13.83 0.00 44.79 3.61
1066 1993 1.507630 CATTGACGCCCACCATGTG 59.492 57.895 0.00 0.00 0.00 3.21
1067 1994 2.342650 GCATTGACGCCCACCATGT 61.343 57.895 0.00 0.00 0.00 3.21
1068 1995 2.491152 GCATTGACGCCCACCATG 59.509 61.111 0.00 0.00 0.00 3.66
1076 2003 0.804364 TCTCACATTGGCATTGACGC 59.196 50.000 15.69 0.00 0.00 5.19
1077 2004 3.495193 CTTTCTCACATTGGCATTGACG 58.505 45.455 15.69 6.77 0.00 4.35
1078 2005 3.367703 CCCTTTCTCACATTGGCATTGAC 60.368 47.826 15.69 0.00 0.00 3.18
1079 2006 2.827322 CCCTTTCTCACATTGGCATTGA 59.173 45.455 15.69 5.24 0.00 2.57
1080 2007 2.675889 GCCCTTTCTCACATTGGCATTG 60.676 50.000 7.78 7.78 38.73 2.82
1081 2008 1.551883 GCCCTTTCTCACATTGGCATT 59.448 47.619 0.00 0.00 38.73 3.56
1082 2009 1.188863 GCCCTTTCTCACATTGGCAT 58.811 50.000 0.00 0.00 38.73 4.40
1083 2010 0.899717 GGCCCTTTCTCACATTGGCA 60.900 55.000 0.00 0.00 40.64 4.92
1084 2011 0.613012 AGGCCCTTTCTCACATTGGC 60.613 55.000 0.00 0.00 38.16 4.52
1085 2012 1.467920 GAGGCCCTTTCTCACATTGG 58.532 55.000 0.00 0.00 0.00 3.16
1086 2013 1.089920 CGAGGCCCTTTCTCACATTG 58.910 55.000 0.00 0.00 0.00 2.82
1087 2014 0.678048 GCGAGGCCCTTTCTCACATT 60.678 55.000 0.00 0.00 0.00 2.71
1088 2015 1.078143 GCGAGGCCCTTTCTCACAT 60.078 57.895 0.00 0.00 0.00 3.21
1089 2016 1.841302 ATGCGAGGCCCTTTCTCACA 61.841 55.000 0.00 0.00 0.00 3.58
1090 2017 1.078143 ATGCGAGGCCCTTTCTCAC 60.078 57.895 0.00 0.00 0.00 3.51
1091 2018 1.221840 GATGCGAGGCCCTTTCTCA 59.778 57.895 0.00 0.00 0.00 3.27
1092 2019 0.813210 CAGATGCGAGGCCCTTTCTC 60.813 60.000 0.00 0.00 0.00 2.87
1093 2020 1.222936 CAGATGCGAGGCCCTTTCT 59.777 57.895 0.00 0.00 0.00 2.52
1094 2021 1.078143 ACAGATGCGAGGCCCTTTC 60.078 57.895 0.00 0.00 0.00 2.62
1095 2022 1.078143 GACAGATGCGAGGCCCTTT 60.078 57.895 0.00 0.00 0.00 3.11
1096 2023 2.586792 GACAGATGCGAGGCCCTT 59.413 61.111 0.00 0.00 0.00 3.95
1097 2024 3.842923 CGACAGATGCGAGGCCCT 61.843 66.667 0.00 0.00 0.00 5.19
1098 2025 4.148825 ACGACAGATGCGAGGCCC 62.149 66.667 0.00 0.00 0.00 5.80
1099 2026 2.583593 GACGACAGATGCGAGGCC 60.584 66.667 0.00 0.00 0.00 5.19
1100 2027 1.227089 ATGACGACAGATGCGAGGC 60.227 57.895 0.00 0.00 0.00 4.70
1101 2028 0.179127 ACATGACGACAGATGCGAGG 60.179 55.000 0.00 0.00 0.00 4.63
1102 2029 1.322637 CAACATGACGACAGATGCGAG 59.677 52.381 0.00 0.00 0.00 5.03
1103 2030 1.349234 CAACATGACGACAGATGCGA 58.651 50.000 0.00 0.00 0.00 5.10
1104 2031 0.371301 CCAACATGACGACAGATGCG 59.629 55.000 0.00 0.00 0.00 4.73
1105 2032 1.442769 ACCAACATGACGACAGATGC 58.557 50.000 0.00 0.00 0.00 3.91
1106 2033 3.498018 TGAAACCAACATGACGACAGATG 59.502 43.478 0.00 0.00 0.00 2.90
1107 2034 3.738982 TGAAACCAACATGACGACAGAT 58.261 40.909 0.00 0.00 0.00 2.90
1108 2035 3.186702 TGAAACCAACATGACGACAGA 57.813 42.857 0.00 0.00 0.00 3.41
1109 2036 3.365264 CCATGAAACCAACATGACGACAG 60.365 47.826 0.00 0.00 45.22 3.51
1110 2037 2.551887 CCATGAAACCAACATGACGACA 59.448 45.455 0.00 0.00 45.22 4.35
1111 2038 2.095263 CCCATGAAACCAACATGACGAC 60.095 50.000 0.00 0.00 45.22 4.34
1112 2039 2.158559 CCCATGAAACCAACATGACGA 58.841 47.619 0.00 0.00 45.22 4.20
1113 2040 2.158559 TCCCATGAAACCAACATGACG 58.841 47.619 0.00 0.00 45.22 4.35
1114 2041 3.420893 TCTCCCATGAAACCAACATGAC 58.579 45.455 0.00 0.00 45.22 3.06
1115 2042 3.805066 TCTCCCATGAAACCAACATGA 57.195 42.857 0.00 0.00 45.22 3.07
1116 2043 5.172934 CAAATCTCCCATGAAACCAACATG 58.827 41.667 0.00 0.00 42.99 3.21
1117 2044 4.223477 CCAAATCTCCCATGAAACCAACAT 59.777 41.667 0.00 0.00 0.00 2.71
1118 2045 3.577848 CCAAATCTCCCATGAAACCAACA 59.422 43.478 0.00 0.00 0.00 3.33
1119 2046 3.831911 TCCAAATCTCCCATGAAACCAAC 59.168 43.478 0.00 0.00 0.00 3.77
1120 2047 4.125124 TCCAAATCTCCCATGAAACCAA 57.875 40.909 0.00 0.00 0.00 3.67
1121 2048 3.824001 TCCAAATCTCCCATGAAACCA 57.176 42.857 0.00 0.00 0.00 3.67
1122 2049 3.119495 CGTTCCAAATCTCCCATGAAACC 60.119 47.826 0.00 0.00 0.00 3.27
1123 2050 3.756434 TCGTTCCAAATCTCCCATGAAAC 59.244 43.478 0.00 0.00 0.00 2.78
1124 2051 4.009675 CTCGTTCCAAATCTCCCATGAAA 58.990 43.478 0.00 0.00 0.00 2.69
1125 2052 3.609853 CTCGTTCCAAATCTCCCATGAA 58.390 45.455 0.00 0.00 0.00 2.57
1126 2053 2.680805 GCTCGTTCCAAATCTCCCATGA 60.681 50.000 0.00 0.00 0.00 3.07
1127 2054 1.672881 GCTCGTTCCAAATCTCCCATG 59.327 52.381 0.00 0.00 0.00 3.66
1128 2055 1.743772 CGCTCGTTCCAAATCTCCCAT 60.744 52.381 0.00 0.00 0.00 4.00
1129 2056 0.391130 CGCTCGTTCCAAATCTCCCA 60.391 55.000 0.00 0.00 0.00 4.37
1130 2057 1.090052 CCGCTCGTTCCAAATCTCCC 61.090 60.000 0.00 0.00 0.00 4.30
1131 2058 0.108329 TCCGCTCGTTCCAAATCTCC 60.108 55.000 0.00 0.00 0.00 3.71
1132 2059 1.393883 GTTCCGCTCGTTCCAAATCTC 59.606 52.381 0.00 0.00 0.00 2.75
1133 2060 1.439679 GTTCCGCTCGTTCCAAATCT 58.560 50.000 0.00 0.00 0.00 2.40
1134 2061 0.094730 CGTTCCGCTCGTTCCAAATC 59.905 55.000 0.00 0.00 0.00 2.17
1135 2062 2.159181 CGTTCCGCTCGTTCCAAAT 58.841 52.632 0.00 0.00 0.00 2.32
1136 2063 3.632700 CGTTCCGCTCGTTCCAAA 58.367 55.556 0.00 0.00 0.00 3.28
1147 2074 0.982673 CTAAACACTCTCGCGTTCCG 59.017 55.000 5.77 0.00 38.61 4.30
1148 2075 1.068055 TCCTAAACACTCTCGCGTTCC 60.068 52.381 5.77 0.00 0.00 3.62
1149 2076 2.342910 TCCTAAACACTCTCGCGTTC 57.657 50.000 5.77 0.00 0.00 3.95
1150 2077 2.806608 TTCCTAAACACTCTCGCGTT 57.193 45.000 5.77 0.00 0.00 4.84
1151 2078 2.029290 ACATTCCTAAACACTCTCGCGT 60.029 45.455 5.77 0.00 0.00 6.01
1152 2079 2.345641 CACATTCCTAAACACTCTCGCG 59.654 50.000 0.00 0.00 0.00 5.87
1153 2080 3.326747 ACACATTCCTAAACACTCTCGC 58.673 45.455 0.00 0.00 0.00 5.03
1154 2081 3.927142 GGACACATTCCTAAACACTCTCG 59.073 47.826 0.00 0.00 41.95 4.04
1166 2093 0.034186 TGGCATGGAGGACACATTCC 60.034 55.000 0.00 0.00 46.33 3.01
1167 2094 2.062971 ATGGCATGGAGGACACATTC 57.937 50.000 0.00 0.00 0.00 2.67
1168 2095 3.117398 ACATATGGCATGGAGGACACATT 60.117 43.478 10.98 0.00 0.00 2.71
1169 2096 2.444388 ACATATGGCATGGAGGACACAT 59.556 45.455 10.98 0.00 0.00 3.21
1170 2097 1.845791 ACATATGGCATGGAGGACACA 59.154 47.619 10.98 0.00 0.00 3.72
1171 2098 2.645838 ACATATGGCATGGAGGACAC 57.354 50.000 10.98 0.00 0.00 3.67
1172 2099 4.350520 TGATTACATATGGCATGGAGGACA 59.649 41.667 10.98 0.00 0.00 4.02
1173 2100 4.697352 GTGATTACATATGGCATGGAGGAC 59.303 45.833 10.98 0.00 0.00 3.85
1174 2101 4.350520 TGTGATTACATATGGCATGGAGGA 59.649 41.667 10.98 0.00 0.00 3.71
1175 2102 4.654915 TGTGATTACATATGGCATGGAGG 58.345 43.478 10.98 0.00 0.00 4.30
1188 2115 8.909923 TCGGTCTTAATTCTAGATGTGATTACA 58.090 33.333 0.00 0.00 41.89 2.41
1189 2116 9.745880 TTCGGTCTTAATTCTAGATGTGATTAC 57.254 33.333 0.00 0.00 0.00 1.89
1190 2117 9.967346 CTTCGGTCTTAATTCTAGATGTGATTA 57.033 33.333 0.00 0.00 0.00 1.75
1191 2118 7.439655 GCTTCGGTCTTAATTCTAGATGTGATT 59.560 37.037 0.00 0.00 0.00 2.57
1192 2119 6.926272 GCTTCGGTCTTAATTCTAGATGTGAT 59.074 38.462 0.00 0.00 0.00 3.06
1193 2120 6.273825 GCTTCGGTCTTAATTCTAGATGTGA 58.726 40.000 0.00 0.00 0.00 3.58
1194 2121 5.463724 GGCTTCGGTCTTAATTCTAGATGTG 59.536 44.000 0.00 0.00 0.00 3.21
1195 2122 5.128827 TGGCTTCGGTCTTAATTCTAGATGT 59.871 40.000 0.00 0.00 0.00 3.06
1196 2123 5.601662 TGGCTTCGGTCTTAATTCTAGATG 58.398 41.667 0.00 0.00 0.00 2.90
1197 2124 5.221541 CCTGGCTTCGGTCTTAATTCTAGAT 60.222 44.000 0.00 0.00 0.00 1.98
1198 2125 4.099573 CCTGGCTTCGGTCTTAATTCTAGA 59.900 45.833 0.00 0.00 0.00 2.43
1199 2126 4.372656 CCTGGCTTCGGTCTTAATTCTAG 58.627 47.826 0.00 0.00 0.00 2.43
1200 2127 3.431766 GCCTGGCTTCGGTCTTAATTCTA 60.432 47.826 12.43 0.00 0.00 2.10
1201 2128 2.681097 GCCTGGCTTCGGTCTTAATTCT 60.681 50.000 12.43 0.00 0.00 2.40
1202 2129 1.671328 GCCTGGCTTCGGTCTTAATTC 59.329 52.381 12.43 0.00 0.00 2.17
1203 2130 1.282157 AGCCTGGCTTCGGTCTTAATT 59.718 47.619 17.22 0.00 33.89 1.40
1204 2131 0.912486 AGCCTGGCTTCGGTCTTAAT 59.088 50.000 17.22 0.00 33.89 1.40
1205 2132 0.690762 AAGCCTGGCTTCGGTCTTAA 59.309 50.000 27.70 0.00 46.77 1.85
1206 2133 2.372852 AAGCCTGGCTTCGGTCTTA 58.627 52.632 27.70 0.00 46.77 2.10
1207 2134 3.161557 AAGCCTGGCTTCGGTCTT 58.838 55.556 27.70 4.35 46.77 3.01
1215 2142 3.521452 AACCCCCAAAGCCTGGCT 61.521 61.111 17.22 17.22 44.90 4.75
1216 2143 3.313524 CAACCCCCAAAGCCTGGC 61.314 66.667 11.65 11.65 44.90 4.85
1217 2144 2.604382 CCAACCCCCAAAGCCTGG 60.604 66.667 0.00 0.00 45.97 4.45
1218 2145 3.313524 GCCAACCCCCAAAGCCTG 61.314 66.667 0.00 0.00 0.00 4.85
1219 2146 4.994756 CGCCAACCCCCAAAGCCT 62.995 66.667 0.00 0.00 0.00 4.58
1234 2161 4.455906 CAAATGCTTGGCCCCCGC 62.456 66.667 0.00 0.00 0.00 6.13
1235 2162 2.679642 TCAAATGCTTGGCCCCCG 60.680 61.111 0.00 0.00 33.01 5.73
1236 2163 1.194121 AACTCAAATGCTTGGCCCCC 61.194 55.000 0.00 0.00 33.01 5.40
1237 2164 0.247460 GAACTCAAATGCTTGGCCCC 59.753 55.000 0.00 0.00 33.01 5.80
1238 2165 1.203287 GAGAACTCAAATGCTTGGCCC 59.797 52.381 0.00 0.00 33.01 5.80
1239 2166 2.165998 AGAGAACTCAAATGCTTGGCC 58.834 47.619 0.00 0.00 33.01 5.36
1240 2167 3.930634 AAGAGAACTCAAATGCTTGGC 57.069 42.857 4.64 0.00 33.01 4.52
1241 2168 6.238211 CGGTATAAGAGAACTCAAATGCTTGG 60.238 42.308 4.64 0.00 33.01 3.61
1242 2169 6.709643 CGGTATAAGAGAACTCAAATGCTTG 58.290 40.000 4.64 0.00 0.00 4.01
1243 2170 5.294552 GCGGTATAAGAGAACTCAAATGCTT 59.705 40.000 4.64 0.00 0.00 3.91
1244 2171 4.811557 GCGGTATAAGAGAACTCAAATGCT 59.188 41.667 4.64 0.00 0.00 3.79
1245 2172 4.318121 CGCGGTATAAGAGAACTCAAATGC 60.318 45.833 0.00 1.47 0.00 3.56
1246 2173 5.041287 TCGCGGTATAAGAGAACTCAAATG 58.959 41.667 6.13 0.00 0.00 2.32
1247 2174 5.067413 TCTCGCGGTATAAGAGAACTCAAAT 59.933 40.000 6.13 0.47 38.00 2.32
1248 2175 4.397103 TCTCGCGGTATAAGAGAACTCAAA 59.603 41.667 6.13 0.00 38.00 2.69
1249 2176 3.943381 TCTCGCGGTATAAGAGAACTCAA 59.057 43.478 6.13 0.00 38.00 3.02
1250 2177 3.538591 TCTCGCGGTATAAGAGAACTCA 58.461 45.455 6.13 0.00 38.00 3.41
1251 2178 3.560896 ACTCTCGCGGTATAAGAGAACTC 59.439 47.826 23.71 0.00 40.09 3.01
1252 2179 3.543665 ACTCTCGCGGTATAAGAGAACT 58.456 45.455 23.71 3.72 40.09 3.01
1253 2180 3.967203 ACTCTCGCGGTATAAGAGAAC 57.033 47.619 23.71 0.00 40.09 3.01
1254 2181 4.749099 GTCTACTCTCGCGGTATAAGAGAA 59.251 45.833 23.71 9.44 40.09 2.87
1255 2182 4.039004 AGTCTACTCTCGCGGTATAAGAGA 59.961 45.833 23.71 9.58 39.09 3.10
1256 2183 4.309099 AGTCTACTCTCGCGGTATAAGAG 58.691 47.826 17.39 17.39 41.84 2.85
1257 2184 4.333913 AGTCTACTCTCGCGGTATAAGA 57.666 45.455 6.13 0.00 0.00 2.10
1258 2185 5.421212 AAAGTCTACTCTCGCGGTATAAG 57.579 43.478 6.13 0.00 0.00 1.73
1259 2186 4.025396 CGAAAGTCTACTCTCGCGGTATAA 60.025 45.833 6.13 0.00 0.00 0.98
1260 2187 3.492383 CGAAAGTCTACTCTCGCGGTATA 59.508 47.826 6.13 0.00 0.00 1.47
1261 2188 2.287373 CGAAAGTCTACTCTCGCGGTAT 59.713 50.000 6.13 0.00 0.00 2.73
1262 2189 1.662629 CGAAAGTCTACTCTCGCGGTA 59.337 52.381 6.13 0.00 0.00 4.02
1263 2190 0.447011 CGAAAGTCTACTCTCGCGGT 59.553 55.000 6.13 0.00 0.00 5.68
1264 2191 0.725686 TCGAAAGTCTACTCTCGCGG 59.274 55.000 6.13 0.00 0.00 6.46
1265 2192 2.522372 TTCGAAAGTCTACTCTCGCG 57.478 50.000 0.00 0.00 0.00 5.87
1266 2193 4.413087 TCAATTCGAAAGTCTACTCTCGC 58.587 43.478 0.00 0.00 0.00 5.03
1267 2194 5.031578 CCTCAATTCGAAAGTCTACTCTCG 58.968 45.833 0.00 0.00 0.00 4.04
1268 2195 4.801516 GCCTCAATTCGAAAGTCTACTCTC 59.198 45.833 0.00 0.00 0.00 3.20
1269 2196 4.382147 GGCCTCAATTCGAAAGTCTACTCT 60.382 45.833 0.00 0.00 0.00 3.24
1270 2197 3.866327 GGCCTCAATTCGAAAGTCTACTC 59.134 47.826 0.00 0.00 0.00 2.59
1271 2198 3.676324 CGGCCTCAATTCGAAAGTCTACT 60.676 47.826 0.00 0.00 0.00 2.57
1272 2199 2.603560 CGGCCTCAATTCGAAAGTCTAC 59.396 50.000 0.00 0.00 0.00 2.59
1273 2200 2.232941 ACGGCCTCAATTCGAAAGTCTA 59.767 45.455 0.00 0.00 0.00 2.59
1274 2201 1.002087 ACGGCCTCAATTCGAAAGTCT 59.998 47.619 0.00 0.00 0.00 3.24
1275 2202 1.393883 GACGGCCTCAATTCGAAAGTC 59.606 52.381 0.00 0.00 0.00 3.01
1276 2203 1.439679 GACGGCCTCAATTCGAAAGT 58.560 50.000 0.00 0.00 0.00 2.66
1277 2204 0.727398 GGACGGCCTCAATTCGAAAG 59.273 55.000 0.00 0.00 0.00 2.62
1278 2205 0.035598 TGGACGGCCTCAATTCGAAA 59.964 50.000 9.82 0.00 34.31 3.46
1279 2206 0.251916 ATGGACGGCCTCAATTCGAA 59.748 50.000 9.82 0.00 34.31 3.71
1280 2207 0.461870 CATGGACGGCCTCAATTCGA 60.462 55.000 9.82 0.00 34.31 3.71
1281 2208 1.439353 CCATGGACGGCCTCAATTCG 61.439 60.000 9.82 0.00 34.31 3.34
1282 2209 0.107214 TCCATGGACGGCCTCAATTC 60.107 55.000 11.44 0.00 34.31 2.17
1283 2210 0.394352 GTCCATGGACGGCCTCAATT 60.394 55.000 28.52 0.00 35.30 2.32
1284 2211 1.224592 GTCCATGGACGGCCTCAAT 59.775 57.895 28.52 0.00 35.30 2.57
1285 2212 2.668632 GTCCATGGACGGCCTCAA 59.331 61.111 28.52 0.00 35.30 3.02
1293 2220 1.956629 ATGACCGACCGTCCATGGAC 61.957 60.000 31.59 31.59 41.18 4.02
1294 2221 1.684391 ATGACCGACCGTCCATGGA 60.684 57.895 11.44 11.44 41.18 3.41
1295 2222 1.521457 CATGACCGACCGTCCATGG 60.521 63.158 4.97 4.97 41.18 3.66
1296 2223 0.458260 TACATGACCGACCGTCCATG 59.542 55.000 0.00 12.23 41.18 3.66
1297 2224 1.410004 ATACATGACCGACCGTCCAT 58.590 50.000 0.00 0.00 41.18 3.41
1298 2225 1.187974 AATACATGACCGACCGTCCA 58.812 50.000 0.00 0.00 41.18 4.02
1299 2226 2.199236 GAAATACATGACCGACCGTCC 58.801 52.381 0.00 0.00 41.18 4.79
1300 2227 2.883574 TGAAATACATGACCGACCGTC 58.116 47.619 0.00 0.00 42.33 4.79
1301 2228 3.322211 TTGAAATACATGACCGACCGT 57.678 42.857 0.00 0.00 0.00 4.83
1302 2229 4.153475 AGTTTTGAAATACATGACCGACCG 59.847 41.667 0.00 0.00 0.00 4.79
1303 2230 5.411669 AGAGTTTTGAAATACATGACCGACC 59.588 40.000 0.00 0.00 0.00 4.79
1304 2231 6.481954 AGAGTTTTGAAATACATGACCGAC 57.518 37.500 0.00 0.00 0.00 4.79
1305 2232 6.934645 AGAAGAGTTTTGAAATACATGACCGA 59.065 34.615 0.00 0.00 0.00 4.69
1306 2233 7.133891 AGAAGAGTTTTGAAATACATGACCG 57.866 36.000 0.00 0.00 0.00 4.79
1322 2249 9.336171 GCCTCATCTCATTAATTAAGAAGAGTT 57.664 33.333 19.02 11.08 34.60 3.01
1323 2250 8.489489 TGCCTCATCTCATTAATTAAGAAGAGT 58.511 33.333 19.02 8.41 34.60 3.24
1324 2251 8.899427 TGCCTCATCTCATTAATTAAGAAGAG 57.101 34.615 16.17 16.17 35.61 2.85
1325 2252 9.685276 TTTGCCTCATCTCATTAATTAAGAAGA 57.315 29.630 12.30 12.30 0.00 2.87
1326 2253 9.947669 CTTTGCCTCATCTCATTAATTAAGAAG 57.052 33.333 3.94 4.04 0.00 2.85
1327 2254 8.408601 GCTTTGCCTCATCTCATTAATTAAGAA 58.591 33.333 3.94 0.00 0.00 2.52
1328 2255 7.776969 AGCTTTGCCTCATCTCATTAATTAAGA 59.223 33.333 3.94 0.00 0.00 2.10
1329 2256 7.938715 AGCTTTGCCTCATCTCATTAATTAAG 58.061 34.615 3.94 0.00 0.00 1.85
1330 2257 7.886629 AGCTTTGCCTCATCTCATTAATTAA 57.113 32.000 0.00 0.00 0.00 1.40
1331 2258 7.886629 AAGCTTTGCCTCATCTCATTAATTA 57.113 32.000 0.00 0.00 0.00 1.40
1332 2259 6.786967 AAGCTTTGCCTCATCTCATTAATT 57.213 33.333 0.00 0.00 0.00 1.40
1333 2260 6.786967 AAAGCTTTGCCTCATCTCATTAAT 57.213 33.333 11.80 0.00 0.00 1.40
1334 2261 6.392354 CAAAAGCTTTGCCTCATCTCATTAA 58.608 36.000 13.54 0.00 0.00 1.40
1335 2262 5.622914 GCAAAAGCTTTGCCTCATCTCATTA 60.623 40.000 13.54 0.00 39.38 1.90
1336 2263 4.817517 CAAAAGCTTTGCCTCATCTCATT 58.182 39.130 13.54 0.00 0.00 2.57
1337 2264 3.368116 GCAAAAGCTTTGCCTCATCTCAT 60.368 43.478 13.54 0.00 39.38 2.90
1338 2265 2.029649 GCAAAAGCTTTGCCTCATCTCA 60.030 45.455 13.54 0.00 39.38 3.27
1339 2266 2.603953 GCAAAAGCTTTGCCTCATCTC 58.396 47.619 13.54 0.00 39.38 2.75
1340 2267 2.738013 GCAAAAGCTTTGCCTCATCT 57.262 45.000 13.54 0.00 39.38 2.90
1347 2274 0.249447 AACGGAGGCAAAAGCTTTGC 60.249 50.000 13.54 17.13 44.22 3.68
1348 2275 2.127251 GAAACGGAGGCAAAAGCTTTG 58.873 47.619 13.54 8.26 0.00 2.77
1349 2276 1.269051 CGAAACGGAGGCAAAAGCTTT 60.269 47.619 5.69 5.69 0.00 3.51
1350 2277 0.310854 CGAAACGGAGGCAAAAGCTT 59.689 50.000 0.00 0.00 0.00 3.74
1351 2278 0.534203 TCGAAACGGAGGCAAAAGCT 60.534 50.000 0.00 0.00 0.00 3.74
1352 2279 0.309612 TTCGAAACGGAGGCAAAAGC 59.690 50.000 0.00 0.00 0.00 3.51
1353 2280 2.766970 TTTCGAAACGGAGGCAAAAG 57.233 45.000 6.47 0.00 0.00 2.27
1354 2281 3.505464 TTTTTCGAAACGGAGGCAAAA 57.495 38.095 10.79 0.00 0.00 2.44
1374 2301 2.232696 GGTACATGGGCAATCCGTTTTT 59.767 45.455 0.00 0.00 38.76 1.94
1375 2302 1.822371 GGTACATGGGCAATCCGTTTT 59.178 47.619 0.00 0.00 38.76 2.43
1376 2303 1.470051 GGTACATGGGCAATCCGTTT 58.530 50.000 0.00 0.00 38.76 3.60
1377 2304 0.395173 GGGTACATGGGCAATCCGTT 60.395 55.000 0.00 0.00 38.76 4.44
1378 2305 1.226262 GGGTACATGGGCAATCCGT 59.774 57.895 0.00 0.00 38.76 4.69
1379 2306 0.178992 ATGGGTACATGGGCAATCCG 60.179 55.000 0.00 0.00 38.76 4.18
1380 2307 3.848353 ATGGGTACATGGGCAATCC 57.152 52.632 0.00 0.00 35.57 3.01
1402 2329 1.002468 CTGGTTATACATGCGCTTGCC 60.002 52.381 21.93 14.89 38.03 4.52
1426 2353 0.172803 ATGCTTCGACACCTCGTACC 59.827 55.000 0.00 0.00 41.02 3.34
1445 2375 0.389037 GCGTCAGTGATCACAGCTCA 60.389 55.000 27.02 1.28 0.00 4.26
1454 2384 0.250467 ACTTTGCCTGCGTCAGTGAT 60.250 50.000 0.00 0.00 0.00 3.06
1524 2454 4.759693 TGGGTTTGACAGTGTGATGTATTC 59.240 41.667 0.00 0.00 32.25 1.75
1702 2655 6.205270 GTGATTGGAAATTCAAACATGGCTTT 59.795 34.615 0.00 0.00 33.27 3.51
1765 2718 3.058914 AGCAATTTCGTTTTCTCTGTCCG 60.059 43.478 0.00 0.00 0.00 4.79
1797 2750 7.446001 TGAAGTGTACAATGCATCATTACAA 57.554 32.000 0.00 0.71 32.35 2.41
1986 2941 0.818296 GGACTTCTAGCAGAGCCGAA 59.182 55.000 0.00 0.00 0.00 4.30
2037 2992 3.414549 TTTGAAAGACGGCAAGTGTTC 57.585 42.857 0.00 0.00 35.04 3.18
2067 3022 4.416516 TCACAACTCAGACTAGGGATTGA 58.583 43.478 0.00 0.00 0.00 2.57
2069 3024 5.825593 TTTCACAACTCAGACTAGGGATT 57.174 39.130 0.00 0.00 0.00 3.01
2077 3032 7.920738 ACAAGTCTTATTTTCACAACTCAGAC 58.079 34.615 0.00 0.00 0.00 3.51
2244 3205 7.696992 AAACAACCCACCTTATATGTTAGTG 57.303 36.000 0.00 0.00 31.33 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.