Multiple sequence alignment - TraesCS7A01G469000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G469000 chr7A 100.000 2294 0 0 1 2294 664998802 665001095 0.000000e+00 4237.0
1 TraesCS7A01G469000 chr7A 86.536 713 60 18 831 1527 665427557 665428249 0.000000e+00 752.0
2 TraesCS7A01G469000 chr7A 81.025 917 108 41 647 1529 664415335 664414451 0.000000e+00 669.0
3 TraesCS7A01G469000 chr7A 80.213 844 115 36 722 1529 664372217 664371390 9.130000e-164 586.0
4 TraesCS7A01G469000 chr7A 88.172 93 10 1 251 343 134437796 134437705 2.410000e-20 110.0
5 TraesCS7A01G469000 chr7A 88.372 86 10 0 257 342 716234101 716234186 1.120000e-18 104.0
6 TraesCS7A01G469000 chr7D 91.368 1900 93 26 250 2108 575407625 575409494 0.000000e+00 2534.0
7 TraesCS7A01G469000 chr7D 84.399 923 77 40 646 1527 575441257 575442153 0.000000e+00 845.0
8 TraesCS7A01G469000 chr7D 81.223 916 115 35 647 1529 574774505 574773614 0.000000e+00 686.0
9 TraesCS7A01G469000 chr7D 80.085 939 103 48 646 1529 574764524 574763615 2.500000e-174 621.0
10 TraesCS7A01G469000 chr7D 93.725 255 5 3 1 250 575407300 575407548 2.780000e-99 372.0
11 TraesCS7A01G469000 chr7D 91.304 92 8 0 252 343 135249516 135249425 2.390000e-25 126.0
12 TraesCS7A01G469000 chr7D 97.436 39 0 1 81 118 603767804 603767766 5.290000e-07 65.8
13 TraesCS7A01G469000 chr7B 89.253 2075 134 42 250 2276 636939624 636941657 0.000000e+00 2514.0
14 TraesCS7A01G469000 chr7B 84.421 674 62 26 646 1294 636983581 636984236 6.960000e-175 623.0
15 TraesCS7A01G469000 chr7B 83.745 689 68 30 646 1323 634647710 634647055 1.510000e-171 612.0
16 TraesCS7A01G469000 chr7B 88.021 192 13 4 61 250 636939363 636939546 3.840000e-53 219.0
17 TraesCS7A01G469000 chr6D 92.105 38 2 1 78 114 159490574 159490537 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G469000 chr7A 664998802 665001095 2293 False 4237.0 4237 100.0000 1 2294 1 chr7A.!!$F1 2293
1 TraesCS7A01G469000 chr7A 665427557 665428249 692 False 752.0 752 86.5360 831 1527 1 chr7A.!!$F2 696
2 TraesCS7A01G469000 chr7A 664414451 664415335 884 True 669.0 669 81.0250 647 1529 1 chr7A.!!$R3 882
3 TraesCS7A01G469000 chr7A 664371390 664372217 827 True 586.0 586 80.2130 722 1529 1 chr7A.!!$R2 807
4 TraesCS7A01G469000 chr7D 575407300 575409494 2194 False 1453.0 2534 92.5465 1 2108 2 chr7D.!!$F2 2107
5 TraesCS7A01G469000 chr7D 575441257 575442153 896 False 845.0 845 84.3990 646 1527 1 chr7D.!!$F1 881
6 TraesCS7A01G469000 chr7D 574773614 574774505 891 True 686.0 686 81.2230 647 1529 1 chr7D.!!$R3 882
7 TraesCS7A01G469000 chr7D 574763615 574764524 909 True 621.0 621 80.0850 646 1529 1 chr7D.!!$R2 883
8 TraesCS7A01G469000 chr7B 636939363 636941657 2294 False 1366.5 2514 88.6370 61 2276 2 chr7B.!!$F2 2215
9 TraesCS7A01G469000 chr7B 636983581 636984236 655 False 623.0 623 84.4210 646 1294 1 chr7B.!!$F1 648
10 TraesCS7A01G469000 chr7B 634647055 634647710 655 True 612.0 612 83.7450 646 1323 1 chr7B.!!$R1 677

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
773 879 0.248866 CCACCACAAACAGGAAACGC 60.249 55.0 0.0 0.0 0.0 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1604 1837 0.038892 CAGTGCTGCGCCTTGAATTT 60.039 50.0 9.97 0.0 0.0 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 166 4.944619 TTGCAGAGGGAGTACATGATAG 57.055 45.455 0.00 0.00 0.00 2.08
160 167 3.916035 TGCAGAGGGAGTACATGATAGT 58.084 45.455 0.00 0.00 0.00 2.12
161 168 3.638627 TGCAGAGGGAGTACATGATAGTG 59.361 47.826 0.00 0.00 0.00 2.74
162 169 3.891977 GCAGAGGGAGTACATGATAGTGA 59.108 47.826 0.00 0.00 0.00 3.41
163 170 4.526262 GCAGAGGGAGTACATGATAGTGAT 59.474 45.833 0.00 0.00 0.00 3.06
164 171 5.712446 GCAGAGGGAGTACATGATAGTGATA 59.288 44.000 0.00 0.00 0.00 2.15
344 430 6.651975 AATTAGGAACAGAGGGAGTATACG 57.348 41.667 0.00 0.00 0.00 3.06
406 492 4.566759 GCTACATGTTCATTTCGCTCTGTA 59.433 41.667 2.30 0.00 0.00 2.74
407 493 5.063438 GCTACATGTTCATTTCGCTCTGTAA 59.937 40.000 2.30 0.00 0.00 2.41
444 530 2.690786 GTGCACGTAGGGATGTAAACA 58.309 47.619 0.00 0.00 0.00 2.83
445 531 3.267483 GTGCACGTAGGGATGTAAACAT 58.733 45.455 0.00 0.00 39.70 2.71
448 534 3.531538 CACGTAGGGATGTAAACATGCT 58.468 45.455 13.33 3.92 43.17 3.79
464 550 1.234821 TGCTCGTTTAAGCCCACTTG 58.765 50.000 0.00 0.00 41.77 3.16
470 556 3.069872 TCGTTTAAGCCCACTTGTCAGTA 59.930 43.478 0.00 0.00 36.57 2.74
622 725 1.069358 GCCGAGTCTAATTAGCCAGCT 59.931 52.381 7.67 0.00 0.00 4.24
623 726 2.296471 GCCGAGTCTAATTAGCCAGCTA 59.704 50.000 7.67 0.00 0.00 3.32
767 873 1.065600 CAACGCCACCACAAACAGG 59.934 57.895 0.00 0.00 0.00 4.00
773 879 0.248866 CCACCACAAACAGGAAACGC 60.249 55.000 0.00 0.00 0.00 4.84
789 933 2.315925 ACGCTCTCTCTCTCTCTCTG 57.684 55.000 0.00 0.00 0.00 3.35
808 982 2.099405 TGTCTCTCTCACACACACACA 58.901 47.619 0.00 0.00 0.00 3.72
809 983 2.159240 TGTCTCTCTCACACACACACAC 60.159 50.000 0.00 0.00 0.00 3.82
810 984 2.099405 TCTCTCTCACACACACACACA 58.901 47.619 0.00 0.00 0.00 3.72
811 985 2.159240 TCTCTCTCACACACACACACAC 60.159 50.000 0.00 0.00 0.00 3.82
812 986 1.548269 TCTCTCACACACACACACACA 59.452 47.619 0.00 0.00 0.00 3.72
813 987 1.660607 CTCTCACACACACACACACAC 59.339 52.381 0.00 0.00 0.00 3.82
814 988 1.001406 TCTCACACACACACACACACA 59.999 47.619 0.00 0.00 0.00 3.72
815 989 1.128507 CTCACACACACACACACACAC 59.871 52.381 0.00 0.00 0.00 3.82
816 990 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
817 991 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
818 992 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
819 993 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
821 995 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
822 996 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
823 997 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
824 998 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
825 999 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
826 1000 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
827 1001 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
828 1002 1.737236 ACACACACACACACACACATC 59.263 47.619 0.00 0.00 0.00 3.06
832 1008 1.146041 ACACACACACACATCGCCT 59.854 52.632 0.00 0.00 0.00 5.52
835 1011 2.232696 ACACACACACACATCGCCTATA 59.767 45.455 0.00 0.00 0.00 1.31
930 1109 5.902681 TCACATCGATCGAAATCTAACCTT 58.097 37.500 23.50 0.00 0.00 3.50
1039 1233 3.708220 CTGAGCTTCTCGGACCGGC 62.708 68.421 15.25 9.51 39.05 6.13
1436 1657 5.008217 TGTTTTCTCTGGTTGGTGATTTACG 59.992 40.000 0.00 0.00 0.00 3.18
1604 1837 7.148306 GGAGTGAAAATTTTCTCGGCATAACTA 60.148 37.037 26.73 4.19 38.02 2.24
1605 1838 8.106247 AGTGAAAATTTTCTCGGCATAACTAA 57.894 30.769 26.73 4.01 38.02 2.24
1694 1929 1.228657 GCCACGACCAGGAACAAGTC 61.229 60.000 0.00 0.00 0.00 3.01
1727 1962 1.442769 GCGAGCAAGAAGGTTGATGA 58.557 50.000 0.00 0.00 0.00 2.92
1730 1965 3.119708 GCGAGCAAGAAGGTTGATGATTT 60.120 43.478 0.00 0.00 0.00 2.17
1733 1968 4.410099 AGCAAGAAGGTTGATGATTTGGA 58.590 39.130 0.00 0.00 0.00 3.53
1737 1972 4.990526 AGAAGGTTGATGATTTGGAGTGT 58.009 39.130 0.00 0.00 0.00 3.55
1743 1979 4.824479 TGATGATTTGGAGTGTAGCTCA 57.176 40.909 0.00 0.00 45.88 4.26
1767 2003 0.179000 AAAAATTGGTTGGTGCGCCA 59.821 45.000 16.89 16.89 44.38 5.69
1769 2005 1.112315 AAATTGGTTGGTGCGCCAGA 61.112 50.000 20.15 8.06 46.91 3.86
1781 2017 0.681733 GCGCCAGATTAGAGGGATGA 59.318 55.000 0.00 0.00 0.00 2.92
1843 2084 2.656069 CGGGGTGGTGAGGTCGAAT 61.656 63.158 0.00 0.00 0.00 3.34
1849 2090 1.549170 GTGGTGAGGTCGAATGGTAGT 59.451 52.381 0.00 0.00 0.00 2.73
1867 2108 2.651105 TACCATTGGGCGCGAGTGA 61.651 57.895 12.10 0.00 37.90 3.41
1926 2167 5.230182 GCGGGAGAAAGAAAATGAACAATT 58.770 37.500 0.00 0.00 0.00 2.32
1965 2206 0.257039 ATTGAGATCTGGTGGCCCAC 59.743 55.000 4.93 4.93 35.17 4.61
1977 2218 1.110442 TGGCCCACAAAAGTGACTTG 58.890 50.000 0.00 0.00 0.00 3.16
2045 2286 4.957759 ATTTAGTATGCACGTGTTTCCC 57.042 40.909 18.38 0.00 0.00 3.97
2052 2309 0.240945 GCACGTGTTTCCCCTCATTG 59.759 55.000 18.38 0.00 0.00 2.82
2090 2360 0.462581 TGAGAATGAGCGTGCCATCC 60.463 55.000 0.00 0.00 0.00 3.51
2112 2386 5.598830 TCCTAAGAGAGAGAGAGAGAGAGAC 59.401 48.000 0.00 0.00 0.00 3.36
2116 2390 5.026121 AGAGAGAGAGAGAGAGAGACAGAA 58.974 45.833 0.00 0.00 0.00 3.02
2117 2391 5.664908 AGAGAGAGAGAGAGAGAGACAGAAT 59.335 44.000 0.00 0.00 0.00 2.40
2119 2393 4.785301 AGAGAGAGAGAGAGACAGAATGG 58.215 47.826 0.00 0.00 43.62 3.16
2121 2395 3.527253 AGAGAGAGAGAGACAGAATGGGA 59.473 47.826 0.00 0.00 43.62 4.37
2154 2428 2.467826 GCTCATGACGCAGAAGCCC 61.468 63.158 10.95 0.00 37.52 5.19
2156 2430 1.364626 CTCATGACGCAGAAGCCCAC 61.365 60.000 0.00 0.00 37.52 4.61
2159 2433 1.028330 ATGACGCAGAAGCCCACATG 61.028 55.000 0.00 0.00 37.52 3.21
2171 2445 4.316025 AGCCCACATGTAAACACCTATT 57.684 40.909 0.00 0.00 0.00 1.73
2172 2446 4.672899 AGCCCACATGTAAACACCTATTT 58.327 39.130 0.00 0.00 0.00 1.40
2173 2447 5.083821 AGCCCACATGTAAACACCTATTTT 58.916 37.500 0.00 0.00 0.00 1.82
2174 2448 5.047377 AGCCCACATGTAAACACCTATTTTG 60.047 40.000 0.00 0.00 0.00 2.44
2186 2460 8.445275 AAACACCTATTTTGGGTTTTCAATTC 57.555 30.769 0.00 0.00 34.44 2.17
2237 2512 3.311486 TTATTTTGCAAAGCCTTCGGG 57.689 42.857 12.41 0.00 38.37 5.14
2253 2528 0.253610 CGGGCCTTACCATAACACCA 59.746 55.000 0.84 0.00 42.05 4.17
2254 2529 1.133915 CGGGCCTTACCATAACACCAT 60.134 52.381 0.84 0.00 42.05 3.55
2257 2532 3.436470 GGGCCTTACCATAACACCATGAT 60.436 47.826 0.84 0.00 42.05 2.45
2273 2548 7.305474 ACACCATGATAAAAAGAAAAGTAGCG 58.695 34.615 0.00 0.00 0.00 4.26
2274 2549 7.174253 ACACCATGATAAAAAGAAAAGTAGCGA 59.826 33.333 0.00 0.00 0.00 4.93
2276 2551 8.021396 ACCATGATAAAAAGAAAAGTAGCGAAC 58.979 33.333 0.00 0.00 0.00 3.95
2277 2552 7.484959 CCATGATAAAAAGAAAAGTAGCGAACC 59.515 37.037 0.00 0.00 0.00 3.62
2278 2553 7.499321 TGATAAAAAGAAAAGTAGCGAACCA 57.501 32.000 0.00 0.00 0.00 3.67
2279 2554 7.932335 TGATAAAAAGAAAAGTAGCGAACCAA 58.068 30.769 0.00 0.00 0.00 3.67
2280 2555 8.573035 TGATAAAAAGAAAAGTAGCGAACCAAT 58.427 29.630 0.00 0.00 0.00 3.16
2281 2556 9.406828 GATAAAAAGAAAAGTAGCGAACCAATT 57.593 29.630 0.00 0.00 0.00 2.32
2282 2557 7.694388 AAAAAGAAAAGTAGCGAACCAATTC 57.306 32.000 0.00 0.00 0.00 2.17
2283 2558 6.635030 AAAGAAAAGTAGCGAACCAATTCT 57.365 33.333 0.00 0.00 32.12 2.40
2284 2559 7.739498 AAAGAAAAGTAGCGAACCAATTCTA 57.261 32.000 0.00 0.00 32.12 2.10
2285 2560 7.923414 AAGAAAAGTAGCGAACCAATTCTAT 57.077 32.000 0.00 0.00 32.12 1.98
2286 2561 7.308782 AGAAAAGTAGCGAACCAATTCTATG 57.691 36.000 0.00 0.00 32.12 2.23
2287 2562 6.316390 AGAAAAGTAGCGAACCAATTCTATGG 59.684 38.462 0.00 0.00 46.38 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 166 8.818057 GCATGGTCCGATTATTTATAGTATCAC 58.182 37.037 0.00 0.00 0.00 3.06
160 167 8.536175 TGCATGGTCCGATTATTTATAGTATCA 58.464 33.333 0.00 0.00 0.00 2.15
161 168 8.942338 TGCATGGTCCGATTATTTATAGTATC 57.058 34.615 0.00 0.00 0.00 2.24
162 169 9.330063 CATGCATGGTCCGATTATTTATAGTAT 57.670 33.333 19.40 0.00 0.00 2.12
163 170 8.318412 ACATGCATGGTCCGATTATTTATAGTA 58.682 33.333 29.41 0.00 0.00 1.82
164 171 7.168219 ACATGCATGGTCCGATTATTTATAGT 58.832 34.615 29.41 0.00 0.00 2.12
205 212 7.997107 TTCGTATAAATGTACACACAGGATC 57.003 36.000 0.00 0.00 38.30 3.36
211 218 8.172484 TGCAGAATTTCGTATAAATGTACACAC 58.828 33.333 0.00 0.00 0.00 3.82
254 340 9.685276 TCAAAATGGATGAACATAGACACTAAT 57.315 29.630 0.00 0.00 0.00 1.73
424 510 2.690786 TGTTTACATCCCTACGTGCAC 58.309 47.619 6.82 6.82 0.00 4.57
444 530 1.812571 CAAGTGGGCTTAAACGAGCAT 59.187 47.619 0.00 0.00 44.49 3.79
445 531 1.234821 CAAGTGGGCTTAAACGAGCA 58.765 50.000 0.00 0.00 44.49 4.26
448 534 2.158871 ACTGACAAGTGGGCTTAAACGA 60.159 45.455 0.00 0.00 34.48 3.85
489 575 9.220767 AGCTCGTAGTTAATTTTCTCAGAAAAT 57.779 29.630 18.17 18.17 0.00 1.82
590 693 1.002379 ACTCGGCTAGTCGGTCTGT 60.002 57.895 18.05 8.21 30.33 3.41
618 721 1.942657 ACACGCATTTGGCTATAGCTG 59.057 47.619 23.53 14.90 41.67 4.24
622 725 2.224426 CCCCTACACGCATTTGGCTATA 60.224 50.000 0.00 0.00 41.67 1.31
623 726 1.476833 CCCCTACACGCATTTGGCTAT 60.477 52.381 0.00 0.00 41.67 2.97
767 873 3.063997 CAGAGAGAGAGAGAGAGCGTTTC 59.936 52.174 0.00 0.00 0.00 2.78
773 879 4.648762 AGAGAGACAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
789 933 2.159240 TGTGTGTGTGTGTGAGAGAGAC 60.159 50.000 0.00 0.00 0.00 3.36
808 982 1.737236 GATGTGTGTGTGTGTGTGTGT 59.263 47.619 0.00 0.00 0.00 3.72
809 983 1.267483 CGATGTGTGTGTGTGTGTGTG 60.267 52.381 0.00 0.00 0.00 3.82
810 984 1.006086 CGATGTGTGTGTGTGTGTGT 58.994 50.000 0.00 0.00 0.00 3.72
811 985 0.316114 GCGATGTGTGTGTGTGTGTG 60.316 55.000 0.00 0.00 0.00 3.82
812 986 1.436195 GGCGATGTGTGTGTGTGTGT 61.436 55.000 0.00 0.00 0.00 3.72
813 987 1.159713 AGGCGATGTGTGTGTGTGTG 61.160 55.000 0.00 0.00 0.00 3.82
814 988 0.391228 TAGGCGATGTGTGTGTGTGT 59.609 50.000 0.00 0.00 0.00 3.72
815 989 1.725641 ATAGGCGATGTGTGTGTGTG 58.274 50.000 0.00 0.00 0.00 3.82
816 990 3.603158 TTATAGGCGATGTGTGTGTGT 57.397 42.857 0.00 0.00 0.00 3.72
817 991 4.153296 TGTTTTATAGGCGATGTGTGTGTG 59.847 41.667 0.00 0.00 0.00 3.82
818 992 4.320023 TGTTTTATAGGCGATGTGTGTGT 58.680 39.130 0.00 0.00 0.00 3.72
819 993 4.937696 TGTTTTATAGGCGATGTGTGTG 57.062 40.909 0.00 0.00 0.00 3.82
821 995 5.065859 TGGAATGTTTTATAGGCGATGTGTG 59.934 40.000 0.00 0.00 0.00 3.82
822 996 5.189928 TGGAATGTTTTATAGGCGATGTGT 58.810 37.500 0.00 0.00 0.00 3.72
823 997 5.749596 TGGAATGTTTTATAGGCGATGTG 57.250 39.130 0.00 0.00 0.00 3.21
824 998 5.179368 CGATGGAATGTTTTATAGGCGATGT 59.821 40.000 0.00 0.00 0.00 3.06
825 999 5.621422 CGATGGAATGTTTTATAGGCGATG 58.379 41.667 0.00 0.00 0.00 3.84
826 1000 4.154195 GCGATGGAATGTTTTATAGGCGAT 59.846 41.667 0.00 0.00 0.00 4.58
827 1001 3.496884 GCGATGGAATGTTTTATAGGCGA 59.503 43.478 0.00 0.00 0.00 5.54
828 1002 3.364964 GGCGATGGAATGTTTTATAGGCG 60.365 47.826 0.00 0.00 0.00 5.52
835 1011 6.605594 TCCTTTTATAGGCGATGGAATGTTTT 59.394 34.615 0.00 0.00 44.37 2.43
1106 1303 2.202623 GCTCGCATTCCTCGTCGT 60.203 61.111 0.00 0.00 0.00 4.34
1200 1397 0.179034 GGATGCCCTCCTGCTTGTAG 60.179 60.000 0.00 0.00 41.29 2.74
1436 1657 2.717639 ACATATGGCAACCCTCTCAC 57.282 50.000 7.80 0.00 0.00 3.51
1560 1793 4.745125 CACTCCACTTACATATAACCAGCG 59.255 45.833 0.00 0.00 0.00 5.18
1594 1827 3.617669 CGCCTTGAATTTAGTTATGCCG 58.382 45.455 0.00 0.00 0.00 5.69
1604 1837 0.038892 CAGTGCTGCGCCTTGAATTT 60.039 50.000 9.97 0.00 0.00 1.82
1605 1838 1.174712 ACAGTGCTGCGCCTTGAATT 61.175 50.000 9.97 0.00 0.00 2.17
1640 1873 1.376609 GCCTTGATACCACTTGCCCG 61.377 60.000 0.00 0.00 0.00 6.13
1645 1878 1.005924 CCTTGGGCCTTGATACCACTT 59.994 52.381 4.53 0.00 33.20 3.16
1648 1881 0.623723 GTCCTTGGGCCTTGATACCA 59.376 55.000 4.53 0.00 0.00 3.25
1737 1972 3.149005 ACCAATTTTTCCGGTGAGCTA 57.851 42.857 0.00 0.00 0.00 3.32
1743 1979 1.202592 GCACCAACCAATTTTTCCGGT 60.203 47.619 0.00 0.00 33.32 5.28
1767 2003 2.641815 GCCACCATCATCCCTCTAATCT 59.358 50.000 0.00 0.00 0.00 2.40
1769 2005 1.349026 CGCCACCATCATCCCTCTAAT 59.651 52.381 0.00 0.00 0.00 1.73
1793 2029 3.443045 CCCCATCACGGTTGCTGC 61.443 66.667 0.00 0.00 0.00 5.25
1794 2030 2.751436 CCCCCATCACGGTTGCTG 60.751 66.667 0.00 0.00 0.00 4.41
1795 2031 2.933287 TCCCCCATCACGGTTGCT 60.933 61.111 0.00 0.00 0.00 3.91
1805 2044 1.308216 CCTCCTTCACCTCCCCCAT 60.308 63.158 0.00 0.00 0.00 4.00
1833 2072 3.090210 TGGTACTACCATTCGACCTCA 57.910 47.619 3.57 0.00 44.79 3.86
1849 2090 2.125310 CACTCGCGCCCAATGGTA 60.125 61.111 0.00 0.00 0.00 3.25
1867 2108 1.224592 CCTATCCGCCTGCCTTTGT 59.775 57.895 0.00 0.00 0.00 2.83
1965 2206 8.807667 ATTATTTTCTCTGCAAGTCACTTTTG 57.192 30.769 0.00 0.00 33.76 2.44
1977 2218 6.749923 AGTTGACTGGATTATTTTCTCTGC 57.250 37.500 0.00 0.00 0.00 4.26
2017 2258 9.549509 GAAACACGTGCATACTAAATATTCAAA 57.450 29.630 17.22 0.00 0.00 2.69
2028 2269 0.690762 AGGGGAAACACGTGCATACT 59.309 50.000 17.22 3.80 40.46 2.12
2090 2360 6.322456 TCTGTCTCTCTCTCTCTCTCTCTTAG 59.678 46.154 0.00 0.00 0.00 2.18
2112 2386 1.843368 AACATGCCACTCCCATTCTG 58.157 50.000 0.00 0.00 0.00 3.02
2116 2390 2.726821 CAGTAAACATGCCACTCCCAT 58.273 47.619 0.00 0.00 0.00 4.00
2117 2391 1.886222 GCAGTAAACATGCCACTCCCA 60.886 52.381 0.00 0.00 37.73 4.37
2119 2393 1.740025 GAGCAGTAAACATGCCACTCC 59.260 52.381 0.00 0.00 44.97 3.85
2121 2395 2.566833 TGAGCAGTAAACATGCCACT 57.433 45.000 0.00 0.00 44.97 4.00
2154 2428 6.339587 ACCCAAAATAGGTGTTTACATGTG 57.660 37.500 9.11 0.00 35.85 3.21
2156 2430 7.928706 TGAAAACCCAAAATAGGTGTTTACATG 59.071 33.333 0.00 0.00 34.83 3.21
2159 2433 8.896320 ATTGAAAACCCAAAATAGGTGTTTAC 57.104 30.769 0.00 0.00 34.83 2.01
2171 2445 9.844257 AATAAACATGAGAATTGAAAACCCAAA 57.156 25.926 0.00 0.00 0.00 3.28
2172 2446 9.844257 AAATAAACATGAGAATTGAAAACCCAA 57.156 25.926 0.00 0.00 0.00 4.12
2173 2447 9.487790 GAAATAAACATGAGAATTGAAAACCCA 57.512 29.630 0.00 0.00 0.00 4.51
2174 2448 8.935844 GGAAATAAACATGAGAATTGAAAACCC 58.064 33.333 0.00 0.00 0.00 4.11
2215 2490 4.645667 CCGAAGGCTTTGCAAAATAAAC 57.354 40.909 13.84 4.57 46.14 2.01
2237 2512 6.952773 TTTATCATGGTGTTATGGTAAGGC 57.047 37.500 0.00 0.00 35.65 4.35
2253 2528 8.106247 TGGTTCGCTACTTTTCTTTTTATCAT 57.894 30.769 0.00 0.00 0.00 2.45
2254 2529 7.499321 TGGTTCGCTACTTTTCTTTTTATCA 57.501 32.000 0.00 0.00 0.00 2.15
2257 2532 8.626526 AGAATTGGTTCGCTACTTTTCTTTTTA 58.373 29.630 0.00 0.00 39.38 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.