Multiple sequence alignment - TraesCS7A01G468600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G468600 chr7A 100.000 2420 0 0 1 2420 664698436 664700855 0.000000e+00 4470.0
1 TraesCS7A01G468600 chr7A 84.456 965 88 25 754 1675 664602988 664603933 0.000000e+00 894.0
2 TraesCS7A01G468600 chr7A 88.169 710 51 12 965 1643 664781109 664780402 0.000000e+00 815.0
3 TraesCS7A01G468600 chr7A 86.943 314 26 7 1683 1987 664872965 664872658 2.980000e-89 339.0
4 TraesCS7A01G468600 chr7A 85.938 320 26 6 1701 2019 664780402 664780101 8.350000e-85 324.0
5 TraesCS7A01G468600 chr7A 89.617 183 10 6 1692 1868 664603914 664604093 8.710000e-55 224.0
6 TraesCS7A01G468600 chr7A 88.750 80 6 1 800 876 664781447 664781368 7.120000e-16 95.3
7 TraesCS7A01G468600 chr7B 92.316 950 42 12 749 1671 635300852 635301797 0.000000e+00 1321.0
8 TraesCS7A01G468600 chr7B 88.671 971 72 15 695 1632 636433403 636432438 0.000000e+00 1149.0
9 TraesCS7A01G468600 chr7B 89.807 726 58 12 1701 2420 635301782 635302497 0.000000e+00 917.0
10 TraesCS7A01G468600 chr7B 88.701 708 47 9 969 1643 635749106 635748399 0.000000e+00 833.0
11 TraesCS7A01G468600 chr7B 89.793 627 48 10 804 1425 635064924 635065539 0.000000e+00 789.0
12 TraesCS7A01G468600 chr7B 89.834 541 47 2 885 1423 635170596 635171130 0.000000e+00 688.0
13 TraesCS7A01G468600 chr7B 89.846 325 28 3 1698 2019 635935438 635935116 1.730000e-111 412.0
14 TraesCS7A01G468600 chr7B 90.064 312 26 4 1698 2007 635748399 635748091 1.350000e-107 399.0
15 TraesCS7A01G468600 chr7B 88.532 218 16 8 678 893 635169977 635170187 3.090000e-64 255.0
16 TraesCS7A01G468600 chr7B 84.739 249 24 7 1743 1977 636432391 636432143 1.120000e-58 237.0
17 TraesCS7A01G468600 chr7B 81.481 243 24 6 335 556 635064597 635064839 1.910000e-41 180.0
18 TraesCS7A01G468600 chr7B 92.126 127 10 0 430 556 635169854 635169980 1.910000e-41 180.0
19 TraesCS7A01G468600 chr7B 92.126 127 10 0 430 556 635300686 635300812 1.910000e-41 180.0
20 TraesCS7A01G468600 chr7B 95.556 90 2 2 1554 1643 635935525 635935438 2.510000e-30 143.0
21 TraesCS7A01G468600 chr7B 89.899 99 8 2 678 776 635064836 635064932 2.530000e-25 126.0
22 TraesCS7A01G468600 chr7D 90.447 984 76 8 678 1643 575149798 575148815 0.000000e+00 1280.0
23 TraesCS7A01G468600 chr7D 87.959 980 72 19 754 1692 574925522 574924548 0.000000e+00 1114.0
24 TraesCS7A01G468600 chr7D 88.537 916 75 12 754 1643 574874727 574875638 0.000000e+00 1083.0
25 TraesCS7A01G468600 chr7D 83.250 1200 146 22 437 1597 575218500 575217317 0.000000e+00 1051.0
26 TraesCS7A01G468600 chr7D 83.622 1038 84 32 681 1689 575074566 575073586 0.000000e+00 896.0
27 TraesCS7A01G468600 chr7D 82.759 754 75 26 1692 2420 574924582 574923859 2.640000e-174 621.0
28 TraesCS7A01G468600 chr7D 90.060 332 30 2 1689 2019 575073625 575073296 6.180000e-116 427.0
29 TraesCS7A01G468600 chr7D 85.759 323 42 3 1701 2023 574875638 574875956 2.980000e-89 339.0
30 TraesCS7A01G468600 chr7D 86.622 299 31 5 1698 1995 575217318 575217028 3.000000e-84 322.0
31 TraesCS7A01G468600 chr5D 92.810 153 7 3 172 322 517310634 517310484 4.050000e-53 219.0
32 TraesCS7A01G468600 chr5D 91.241 137 11 1 549 685 548323891 548323756 4.110000e-43 185.0
33 TraesCS7A01G468600 chr4B 92.810 153 7 3 172 322 80990799 80990649 4.050000e-53 219.0
34 TraesCS7A01G468600 chr6B 92.810 153 6 4 172 322 57455782 57455633 1.460000e-52 217.0
35 TraesCS7A01G468600 chr6B 92.258 155 8 3 169 322 515066419 515066570 1.460000e-52 217.0
36 TraesCS7A01G468600 chr5A 92.258 155 8 3 172 324 206731002 206730850 1.460000e-52 217.0
37 TraesCS7A01G468600 chr4A 92.208 154 8 3 172 323 462706839 462706688 5.240000e-52 215.0
38 TraesCS7A01G468600 chr2D 92.208 154 8 3 172 323 247099662 247099511 5.240000e-52 215.0
39 TraesCS7A01G468600 chr2D 92.208 154 8 3 172 323 260128072 260127921 5.240000e-52 215.0
40 TraesCS7A01G468600 chr2D 92.086 139 9 2 550 687 71839870 71840007 6.830000e-46 195.0
41 TraesCS7A01G468600 chr2D 92.481 133 9 1 549 681 650879907 650880038 3.180000e-44 189.0
42 TraesCS7A01G468600 chr1A 91.304 161 9 4 165 322 66898404 66898562 5.240000e-52 215.0
43 TraesCS7A01G468600 chr6D 91.729 133 11 0 550 682 160470777 160470645 4.110000e-43 185.0
44 TraesCS7A01G468600 chr2B 91.729 133 11 0 550 682 598960981 598960849 4.110000e-43 185.0
45 TraesCS7A01G468600 chr4D 90.210 143 10 4 540 681 494829014 494829153 1.480000e-42 183.0
46 TraesCS7A01G468600 chr4D 90.580 138 11 2 551 687 106682382 106682246 5.310000e-42 182.0
47 TraesCS7A01G468600 chr3D 90.141 142 12 2 544 683 261156858 261156999 1.480000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G468600 chr7A 664698436 664700855 2419 False 4470.000000 4470 100.000000 1 2420 1 chr7A.!!$F1 2419
1 TraesCS7A01G468600 chr7A 664602988 664604093 1105 False 559.000000 894 87.036500 754 1868 2 chr7A.!!$F2 1114
2 TraesCS7A01G468600 chr7A 664780101 664781447 1346 True 411.433333 815 87.619000 800 2019 3 chr7A.!!$R2 1219
3 TraesCS7A01G468600 chr7B 635300686 635302497 1811 False 806.000000 1321 91.416333 430 2420 3 chr7B.!!$F3 1990
4 TraesCS7A01G468600 chr7B 636432143 636433403 1260 True 693.000000 1149 86.705000 695 1977 2 chr7B.!!$R3 1282
5 TraesCS7A01G468600 chr7B 635748091 635749106 1015 True 616.000000 833 89.382500 969 2007 2 chr7B.!!$R1 1038
6 TraesCS7A01G468600 chr7B 635169854 635171130 1276 False 374.333333 688 90.164000 430 1423 3 chr7B.!!$F2 993
7 TraesCS7A01G468600 chr7B 635064597 635065539 942 False 365.000000 789 87.057667 335 1425 3 chr7B.!!$F1 1090
8 TraesCS7A01G468600 chr7D 575148815 575149798 983 True 1280.000000 1280 90.447000 678 1643 1 chr7D.!!$R1 965
9 TraesCS7A01G468600 chr7D 574923859 574925522 1663 True 867.500000 1114 85.359000 754 2420 2 chr7D.!!$R2 1666
10 TraesCS7A01G468600 chr7D 574874727 574875956 1229 False 711.000000 1083 87.148000 754 2023 2 chr7D.!!$F1 1269
11 TraesCS7A01G468600 chr7D 575217028 575218500 1472 True 686.500000 1051 84.936000 437 1995 2 chr7D.!!$R4 1558
12 TraesCS7A01G468600 chr7D 575073296 575074566 1270 True 661.500000 896 86.841000 681 2019 2 chr7D.!!$R3 1338

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
380 382 0.251073 GGCACCGTGGTAACTGGTAT 59.749 55.0 0.0 0.0 42.96 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2163 2937 0.397816 AGGGCTCGAGGCAGTTATCT 60.398 55.0 36.07 21.7 44.01 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.938280 AAAAGCACTAGTAGATGTGTAATTACA 57.062 29.630 14.35 14.35 36.63 2.41
30 31 9.534565 AAGCACTAGTAGATGTGTAATTACATG 57.465 33.333 20.72 11.77 41.15 3.21
31 32 8.914011 AGCACTAGTAGATGTGTAATTACATGA 58.086 33.333 20.72 11.42 41.15 3.07
32 33 9.186323 GCACTAGTAGATGTGTAATTACATGAG 57.814 37.037 20.72 11.30 41.15 2.90
33 34 9.684448 CACTAGTAGATGTGTAATTACATGAGG 57.316 37.037 20.72 7.72 41.15 3.86
34 35 8.361139 ACTAGTAGATGTGTAATTACATGAGGC 58.639 37.037 20.72 8.64 41.15 4.70
35 36 6.525629 AGTAGATGTGTAATTACATGAGGCC 58.474 40.000 20.72 7.96 41.15 5.19
36 37 5.372343 AGATGTGTAATTACATGAGGCCA 57.628 39.130 20.72 13.07 41.15 5.36
37 38 5.754782 AGATGTGTAATTACATGAGGCCAA 58.245 37.500 20.72 0.00 41.15 4.52
38 39 5.824624 AGATGTGTAATTACATGAGGCCAAG 59.175 40.000 20.72 0.00 41.15 3.61
39 40 5.172687 TGTGTAATTACATGAGGCCAAGA 57.827 39.130 20.72 0.00 38.63 3.02
40 41 4.941263 TGTGTAATTACATGAGGCCAAGAC 59.059 41.667 20.72 4.79 38.63 3.01
41 42 4.941263 GTGTAATTACATGAGGCCAAGACA 59.059 41.667 20.72 0.00 38.63 3.41
42 43 5.590259 GTGTAATTACATGAGGCCAAGACAT 59.410 40.000 20.72 1.94 38.63 3.06
43 44 6.095440 GTGTAATTACATGAGGCCAAGACATT 59.905 38.462 20.72 0.00 38.63 2.71
44 45 6.663093 TGTAATTACATGAGGCCAAGACATTT 59.337 34.615 14.35 0.95 0.00 2.32
45 46 6.610075 AATTACATGAGGCCAAGACATTTT 57.390 33.333 5.01 0.00 0.00 1.82
46 47 5.643379 TTACATGAGGCCAAGACATTTTC 57.357 39.130 5.01 0.00 0.00 2.29
47 48 3.499338 ACATGAGGCCAAGACATTTTCA 58.501 40.909 5.01 0.00 0.00 2.69
48 49 4.091549 ACATGAGGCCAAGACATTTTCAT 58.908 39.130 5.01 0.00 0.00 2.57
49 50 4.081862 ACATGAGGCCAAGACATTTTCATG 60.082 41.667 18.97 18.97 43.56 3.07
51 52 3.256383 TGAGGCCAAGACATTTTCATGTG 59.744 43.478 5.01 0.00 44.22 3.21
52 53 3.233507 AGGCCAAGACATTTTCATGTGT 58.766 40.909 5.01 0.00 44.22 3.72
53 54 4.406456 AGGCCAAGACATTTTCATGTGTA 58.594 39.130 5.01 0.00 44.22 2.90
54 55 5.018809 AGGCCAAGACATTTTCATGTGTAT 58.981 37.500 5.01 0.00 44.22 2.29
55 56 6.186957 AGGCCAAGACATTTTCATGTGTATA 58.813 36.000 5.01 0.00 44.22 1.47
56 57 6.835488 AGGCCAAGACATTTTCATGTGTATAT 59.165 34.615 5.01 0.00 44.22 0.86
57 58 7.342799 AGGCCAAGACATTTTCATGTGTATATT 59.657 33.333 5.01 0.00 44.22 1.28
58 59 7.649306 GGCCAAGACATTTTCATGTGTATATTC 59.351 37.037 0.00 0.00 44.22 1.75
59 60 8.408601 GCCAAGACATTTTCATGTGTATATTCT 58.591 33.333 0.00 0.00 44.22 2.40
81 82 7.891183 TCTAGTTCACTTCATTTTCTAGCAC 57.109 36.000 0.00 0.00 0.00 4.40
82 83 5.597813 AGTTCACTTCATTTTCTAGCACG 57.402 39.130 0.00 0.00 0.00 5.34
83 84 5.297547 AGTTCACTTCATTTTCTAGCACGA 58.702 37.500 0.00 0.00 0.00 4.35
84 85 5.177696 AGTTCACTTCATTTTCTAGCACGAC 59.822 40.000 0.00 0.00 0.00 4.34
85 86 4.883083 TCACTTCATTTTCTAGCACGACT 58.117 39.130 0.00 0.00 0.00 4.18
86 87 5.297547 TCACTTCATTTTCTAGCACGACTT 58.702 37.500 0.00 0.00 0.00 3.01
87 88 5.758296 TCACTTCATTTTCTAGCACGACTTT 59.242 36.000 0.00 0.00 0.00 2.66
88 89 5.848036 CACTTCATTTTCTAGCACGACTTTG 59.152 40.000 0.00 0.00 0.00 2.77
89 90 5.527582 ACTTCATTTTCTAGCACGACTTTGT 59.472 36.000 0.00 0.00 0.00 2.83
90 91 6.038271 ACTTCATTTTCTAGCACGACTTTGTT 59.962 34.615 0.00 0.00 0.00 2.83
91 92 5.747565 TCATTTTCTAGCACGACTTTGTTG 58.252 37.500 0.00 0.00 0.00 3.33
92 93 5.295787 TCATTTTCTAGCACGACTTTGTTGT 59.704 36.000 0.00 0.00 0.00 3.32
93 94 5.554822 TTTTCTAGCACGACTTTGTTGTT 57.445 34.783 0.00 0.00 0.00 2.83
94 95 4.789095 TTCTAGCACGACTTTGTTGTTC 57.211 40.909 0.00 0.00 0.00 3.18
95 96 3.128349 TCTAGCACGACTTTGTTGTTCC 58.872 45.455 0.00 0.00 0.00 3.62
96 97 2.038387 AGCACGACTTTGTTGTTCCT 57.962 45.000 0.00 0.00 0.00 3.36
97 98 3.188159 AGCACGACTTTGTTGTTCCTA 57.812 42.857 0.00 0.00 0.00 2.94
98 99 2.870411 AGCACGACTTTGTTGTTCCTAC 59.130 45.455 0.00 0.00 0.00 3.18
99 100 2.870411 GCACGACTTTGTTGTTCCTACT 59.130 45.455 0.00 0.00 0.00 2.57
100 101 4.053295 GCACGACTTTGTTGTTCCTACTA 58.947 43.478 0.00 0.00 0.00 1.82
101 102 4.508861 GCACGACTTTGTTGTTCCTACTAA 59.491 41.667 0.00 0.00 0.00 2.24
102 103 5.006941 GCACGACTTTGTTGTTCCTACTAAA 59.993 40.000 0.00 0.00 0.00 1.85
103 104 6.293244 GCACGACTTTGTTGTTCCTACTAAAT 60.293 38.462 0.00 0.00 0.00 1.40
104 105 7.636326 CACGACTTTGTTGTTCCTACTAAATT 58.364 34.615 0.00 0.00 0.00 1.82
105 106 7.586300 CACGACTTTGTTGTTCCTACTAAATTG 59.414 37.037 0.00 0.00 0.00 2.32
106 107 6.577427 CGACTTTGTTGTTCCTACTAAATTGC 59.423 38.462 0.00 0.00 0.00 3.56
107 108 7.341445 ACTTTGTTGTTCCTACTAAATTGCA 57.659 32.000 0.00 0.00 0.00 4.08
108 109 7.777095 ACTTTGTTGTTCCTACTAAATTGCAA 58.223 30.769 0.00 0.00 0.00 4.08
109 110 8.421002 ACTTTGTTGTTCCTACTAAATTGCAAT 58.579 29.630 5.99 5.99 0.00 3.56
110 111 9.260002 CTTTGTTGTTCCTACTAAATTGCAATT 57.740 29.630 18.99 18.99 0.00 2.32
111 112 9.606631 TTTGTTGTTCCTACTAAATTGCAATTT 57.393 25.926 33.26 33.26 41.24 1.82
112 113 9.606631 TTGTTGTTCCTACTAAATTGCAATTTT 57.393 25.926 35.18 23.57 39.24 1.82
113 114 9.039870 TGTTGTTCCTACTAAATTGCAATTTTG 57.960 29.630 35.18 33.12 39.24 2.44
114 115 9.040939 GTTGTTCCTACTAAATTGCAATTTTGT 57.959 29.630 36.39 36.39 43.31 2.83
115 116 9.606631 TTGTTCCTACTAAATTGCAATTTTGTT 57.393 25.926 38.06 27.29 39.92 2.83
116 117 9.255304 TGTTCCTACTAAATTGCAATTTTGTTC 57.745 29.630 38.06 26.83 39.92 3.18
117 118 8.708742 GTTCCTACTAAATTGCAATTTTGTTCC 58.291 33.333 38.06 24.30 39.92 3.62
118 119 8.189119 TCCTACTAAATTGCAATTTTGTTCCT 57.811 30.769 38.06 24.55 39.92 3.36
119 120 9.303116 TCCTACTAAATTGCAATTTTGTTCCTA 57.697 29.630 38.06 26.31 39.92 2.94
120 121 9.353999 CCTACTAAATTGCAATTTTGTTCCTAC 57.646 33.333 38.06 0.00 39.92 3.18
123 124 8.088365 ACTAAATTGCAATTTTGTTCCTACTCC 58.912 33.333 35.18 0.00 39.92 3.85
124 125 4.864704 TTGCAATTTTGTTCCTACTCCC 57.135 40.909 0.00 0.00 0.00 4.30
125 126 4.112634 TGCAATTTTGTTCCTACTCCCT 57.887 40.909 0.00 0.00 0.00 4.20
126 127 4.079253 TGCAATTTTGTTCCTACTCCCTC 58.921 43.478 0.00 0.00 0.00 4.30
127 128 4.202567 TGCAATTTTGTTCCTACTCCCTCT 60.203 41.667 0.00 0.00 0.00 3.69
128 129 4.156739 GCAATTTTGTTCCTACTCCCTCTG 59.843 45.833 0.00 0.00 0.00 3.35
129 130 5.316987 CAATTTTGTTCCTACTCCCTCTGT 58.683 41.667 0.00 0.00 0.00 3.41
130 131 4.618920 TTTTGTTCCTACTCCCTCTGTC 57.381 45.455 0.00 0.00 0.00 3.51
131 132 2.233305 TGTTCCTACTCCCTCTGTCC 57.767 55.000 0.00 0.00 0.00 4.02
132 133 1.273098 TGTTCCTACTCCCTCTGTCCC 60.273 57.143 0.00 0.00 0.00 4.46
133 134 1.089978 TTCCTACTCCCTCTGTCCCA 58.910 55.000 0.00 0.00 0.00 4.37
134 135 1.319947 TCCTACTCCCTCTGTCCCAT 58.680 55.000 0.00 0.00 0.00 4.00
135 136 1.651770 TCCTACTCCCTCTGTCCCATT 59.348 52.381 0.00 0.00 0.00 3.16
136 137 2.863238 TCCTACTCCCTCTGTCCCATTA 59.137 50.000 0.00 0.00 0.00 1.90
137 138 3.471306 TCCTACTCCCTCTGTCCCATTAT 59.529 47.826 0.00 0.00 0.00 1.28
138 139 4.077982 TCCTACTCCCTCTGTCCCATTATT 60.078 45.833 0.00 0.00 0.00 1.40
139 140 4.660771 CCTACTCCCTCTGTCCCATTATTT 59.339 45.833 0.00 0.00 0.00 1.40
140 141 4.510167 ACTCCCTCTGTCCCATTATTTG 57.490 45.455 0.00 0.00 0.00 2.32
141 142 4.111577 ACTCCCTCTGTCCCATTATTTGA 58.888 43.478 0.00 0.00 0.00 2.69
142 143 4.080299 ACTCCCTCTGTCCCATTATTTGAC 60.080 45.833 0.00 0.00 0.00 3.18
143 144 3.849574 TCCCTCTGTCCCATTATTTGACA 59.150 43.478 0.00 0.00 37.45 3.58
144 145 3.947834 CCCTCTGTCCCATTATTTGACAC 59.052 47.826 0.00 0.00 35.34 3.67
145 146 4.567537 CCCTCTGTCCCATTATTTGACACA 60.568 45.833 0.00 0.00 35.34 3.72
146 147 5.009631 CCTCTGTCCCATTATTTGACACAA 58.990 41.667 0.00 0.00 35.34 3.33
147 148 5.476599 CCTCTGTCCCATTATTTGACACAAA 59.523 40.000 0.00 0.00 35.34 2.83
148 149 6.015519 CCTCTGTCCCATTATTTGACACAAAA 60.016 38.462 0.00 0.00 35.34 2.44
149 150 7.353414 TCTGTCCCATTATTTGACACAAAAA 57.647 32.000 0.00 0.00 35.34 1.94
150 151 7.206687 TCTGTCCCATTATTTGACACAAAAAC 58.793 34.615 0.00 0.00 35.34 2.43
151 152 5.980116 TGTCCCATTATTTGACACAAAAACG 59.020 36.000 0.00 0.00 34.28 3.60
152 153 5.980715 GTCCCATTATTTGACACAAAAACGT 59.019 36.000 0.00 0.00 0.00 3.99
153 154 6.143278 GTCCCATTATTTGACACAAAAACGTC 59.857 38.462 0.00 0.00 0.00 4.34
154 155 6.039941 TCCCATTATTTGACACAAAAACGTCT 59.960 34.615 0.00 0.00 33.18 4.18
155 156 6.699642 CCCATTATTTGACACAAAAACGTCTT 59.300 34.615 0.00 0.00 33.18 3.01
156 157 7.863375 CCCATTATTTGACACAAAAACGTCTTA 59.137 33.333 0.00 0.00 33.18 2.10
157 158 8.687301 CCATTATTTGACACAAAAACGTCTTAC 58.313 33.333 0.00 0.00 33.18 2.34
158 159 9.227490 CATTATTTGACACAAAAACGTCTTACA 57.773 29.630 0.00 0.00 33.18 2.41
159 160 9.959749 ATTATTTGACACAAAAACGTCTTACAT 57.040 25.926 0.00 0.00 33.18 2.29
160 161 9.790389 TTATTTGACACAAAAACGTCTTACATT 57.210 25.926 0.00 0.00 33.18 2.71
162 163 9.959749 ATTTGACACAAAAACGTCTTACATTAT 57.040 25.926 0.00 0.00 33.18 1.28
164 165 9.866936 TTGACACAAAAACGTCTTACATTATAC 57.133 29.630 0.00 0.00 33.18 1.47
165 166 9.263538 TGACACAAAAACGTCTTACATTATACT 57.736 29.630 0.00 0.00 33.18 2.12
166 167 9.737025 GACACAAAAACGTCTTACATTATACTC 57.263 33.333 0.00 0.00 0.00 2.59
167 168 9.485206 ACACAAAAACGTCTTACATTATACTCT 57.515 29.630 0.00 0.00 0.00 3.24
171 172 9.821662 AAAAACGTCTTACATTATACTCTTTGC 57.178 29.630 0.00 0.00 0.00 3.68
172 173 8.773404 AAACGTCTTACATTATACTCTTTGCT 57.227 30.769 0.00 0.00 0.00 3.91
173 174 9.865321 AAACGTCTTACATTATACTCTTTGCTA 57.135 29.630 0.00 0.00 0.00 3.49
174 175 9.865321 AACGTCTTACATTATACTCTTTGCTAA 57.135 29.630 0.00 0.00 0.00 3.09
175 176 9.865321 ACGTCTTACATTATACTCTTTGCTAAA 57.135 29.630 0.00 0.00 0.00 1.85
209 210 9.996554 TTCTAGAGATTTCAACAAATGACTACA 57.003 29.630 0.00 0.00 37.92 2.74
214 215 9.941664 GAGATTTCAACAAATGACTACATATGG 57.058 33.333 7.80 0.00 37.92 2.74
215 216 9.685276 AGATTTCAACAAATGACTACATATGGA 57.315 29.630 7.80 0.00 37.92 3.41
216 217 9.941664 GATTTCAACAAATGACTACATATGGAG 57.058 33.333 13.77 13.77 37.92 3.86
217 218 6.925610 TCAACAAATGACTACATATGGAGC 57.074 37.500 15.30 8.47 35.50 4.70
218 219 6.413892 TCAACAAATGACTACATATGGAGCA 58.586 36.000 15.30 13.71 35.50 4.26
219 220 6.883756 TCAACAAATGACTACATATGGAGCAA 59.116 34.615 15.30 3.70 35.50 3.91
220 221 7.392953 TCAACAAATGACTACATATGGAGCAAA 59.607 33.333 15.30 1.04 35.50 3.68
221 222 7.701539 ACAAATGACTACATATGGAGCAAAA 57.298 32.000 15.30 0.00 35.50 2.44
222 223 8.297470 ACAAATGACTACATATGGAGCAAAAT 57.703 30.769 15.30 0.99 35.50 1.82
223 224 8.192774 ACAAATGACTACATATGGAGCAAAATG 58.807 33.333 15.30 11.15 35.50 2.32
224 225 8.407832 CAAATGACTACATATGGAGCAAAATGA 58.592 33.333 15.30 0.00 35.50 2.57
225 226 7.741027 ATGACTACATATGGAGCAAAATGAG 57.259 36.000 15.30 0.00 34.71 2.90
226 227 6.653020 TGACTACATATGGAGCAAAATGAGT 58.347 36.000 15.30 0.00 0.00 3.41
227 228 6.539826 TGACTACATATGGAGCAAAATGAGTG 59.460 38.462 15.30 0.00 0.00 3.51
228 229 6.653020 ACTACATATGGAGCAAAATGAGTGA 58.347 36.000 15.30 0.00 0.00 3.41
229 230 7.112122 ACTACATATGGAGCAAAATGAGTGAA 58.888 34.615 15.30 0.00 0.00 3.18
230 231 7.776969 ACTACATATGGAGCAAAATGAGTGAAT 59.223 33.333 15.30 0.00 0.00 2.57
231 232 7.035840 ACATATGGAGCAAAATGAGTGAATC 57.964 36.000 7.80 0.00 0.00 2.52
232 233 6.832384 ACATATGGAGCAAAATGAGTGAATCT 59.168 34.615 7.80 0.00 0.00 2.40
233 234 5.578005 ATGGAGCAAAATGAGTGAATCTG 57.422 39.130 0.00 0.00 0.00 2.90
234 235 3.192001 TGGAGCAAAATGAGTGAATCTGC 59.808 43.478 0.00 0.00 0.00 4.26
235 236 3.192001 GGAGCAAAATGAGTGAATCTGCA 59.808 43.478 0.00 0.00 0.00 4.41
236 237 4.164294 GAGCAAAATGAGTGAATCTGCAC 58.836 43.478 0.00 0.00 39.05 4.57
248 249 7.934855 AGTGAATCTGCACTCTGAAAAATAT 57.065 32.000 0.00 0.00 45.54 1.28
249 250 7.759465 AGTGAATCTGCACTCTGAAAAATATG 58.241 34.615 0.00 0.00 45.54 1.78
250 251 7.392673 AGTGAATCTGCACTCTGAAAAATATGT 59.607 33.333 0.00 0.00 45.54 2.29
251 252 7.695618 GTGAATCTGCACTCTGAAAAATATGTC 59.304 37.037 0.00 0.00 35.91 3.06
252 253 7.609146 TGAATCTGCACTCTGAAAAATATGTCT 59.391 33.333 0.00 0.00 0.00 3.41
253 254 9.102757 GAATCTGCACTCTGAAAAATATGTCTA 57.897 33.333 0.00 0.00 0.00 2.59
254 255 9.624373 AATCTGCACTCTGAAAAATATGTCTAT 57.376 29.630 0.00 0.00 0.00 1.98
280 281 6.877611 ACATCCGTATTTGGTAATCCATTC 57.122 37.500 0.00 0.00 43.91 2.67
281 282 5.468746 ACATCCGTATTTGGTAATCCATTCG 59.531 40.000 0.00 0.00 43.91 3.34
282 283 5.279255 TCCGTATTTGGTAATCCATTCGA 57.721 39.130 0.00 0.00 43.91 3.71
283 284 5.672503 TCCGTATTTGGTAATCCATTCGAA 58.327 37.500 0.00 0.00 43.91 3.71
284 285 6.114089 TCCGTATTTGGTAATCCATTCGAAA 58.886 36.000 0.00 0.00 43.91 3.46
285 286 6.768861 TCCGTATTTGGTAATCCATTCGAAAT 59.231 34.615 0.00 0.00 43.91 2.17
286 287 7.041644 TCCGTATTTGGTAATCCATTCGAAATC 60.042 37.037 0.00 0.00 43.91 2.17
287 288 7.041372 CCGTATTTGGTAATCCATTCGAAATCT 60.041 37.037 0.00 0.00 43.91 2.40
288 289 8.009974 CGTATTTGGTAATCCATTCGAAATCTC 58.990 37.037 0.00 0.00 43.91 2.75
289 290 9.057089 GTATTTGGTAATCCATTCGAAATCTCT 57.943 33.333 0.00 0.00 43.91 3.10
291 292 8.433421 TTTGGTAATCCATTCGAAATCTCTAC 57.567 34.615 0.00 1.96 43.91 2.59
292 293 7.119709 TGGTAATCCATTCGAAATCTCTACA 57.880 36.000 0.00 0.00 39.03 2.74
293 294 7.561251 TGGTAATCCATTCGAAATCTCTACAA 58.439 34.615 0.00 0.00 39.03 2.41
294 295 8.044309 TGGTAATCCATTCGAAATCTCTACAAA 58.956 33.333 0.00 0.00 39.03 2.83
295 296 8.552034 GGTAATCCATTCGAAATCTCTACAAAG 58.448 37.037 0.00 0.00 0.00 2.77
296 297 9.314321 GTAATCCATTCGAAATCTCTACAAAGA 57.686 33.333 0.00 0.00 0.00 2.52
297 298 7.778470 ATCCATTCGAAATCTCTACAAAGAC 57.222 36.000 0.00 0.00 0.00 3.01
298 299 6.697395 TCCATTCGAAATCTCTACAAAGACA 58.303 36.000 0.00 0.00 0.00 3.41
299 300 7.158697 TCCATTCGAAATCTCTACAAAGACAA 58.841 34.615 0.00 0.00 0.00 3.18
300 301 7.659799 TCCATTCGAAATCTCTACAAAGACAAA 59.340 33.333 0.00 0.00 0.00 2.83
301 302 8.454106 CCATTCGAAATCTCTACAAAGACAAAT 58.546 33.333 0.00 0.00 0.00 2.32
313 314 9.158233 TCTACAAAGACAAATATTTAGGAACGG 57.842 33.333 0.00 0.00 0.00 4.44
314 315 7.989416 ACAAAGACAAATATTTAGGAACGGA 57.011 32.000 0.00 0.00 0.00 4.69
315 316 8.040716 ACAAAGACAAATATTTAGGAACGGAG 57.959 34.615 0.00 0.00 0.00 4.63
316 317 7.881232 ACAAAGACAAATATTTAGGAACGGAGA 59.119 33.333 0.00 0.00 0.00 3.71
317 318 8.391106 CAAAGACAAATATTTAGGAACGGAGAG 58.609 37.037 0.00 0.00 0.00 3.20
318 319 7.419711 AGACAAATATTTAGGAACGGAGAGA 57.580 36.000 0.00 0.00 0.00 3.10
319 320 7.493367 AGACAAATATTTAGGAACGGAGAGAG 58.507 38.462 0.00 0.00 0.00 3.20
320 321 7.124448 AGACAAATATTTAGGAACGGAGAGAGT 59.876 37.037 0.00 0.00 0.00 3.24
321 322 8.302515 ACAAATATTTAGGAACGGAGAGAGTA 57.697 34.615 0.00 0.00 0.00 2.59
322 323 8.925338 ACAAATATTTAGGAACGGAGAGAGTAT 58.075 33.333 0.00 0.00 0.00 2.12
323 324 9.197694 CAAATATTTAGGAACGGAGAGAGTATG 57.802 37.037 0.00 0.00 0.00 2.39
324 325 8.707796 AATATTTAGGAACGGAGAGAGTATGA 57.292 34.615 0.00 0.00 0.00 2.15
325 326 5.831702 TTTAGGAACGGAGAGAGTATGAC 57.168 43.478 0.00 0.00 0.00 3.06
326 327 2.290464 AGGAACGGAGAGAGTATGACG 58.710 52.381 0.00 0.00 0.00 4.35
327 328 1.334243 GGAACGGAGAGAGTATGACGG 59.666 57.143 0.00 0.00 0.00 4.79
328 329 2.286872 GAACGGAGAGAGTATGACGGA 58.713 52.381 0.00 0.00 0.00 4.69
329 330 1.956297 ACGGAGAGAGTATGACGGAG 58.044 55.000 0.00 0.00 0.00 4.63
330 331 1.231221 CGGAGAGAGTATGACGGAGG 58.769 60.000 0.00 0.00 0.00 4.30
331 332 1.611519 GGAGAGAGTATGACGGAGGG 58.388 60.000 0.00 0.00 0.00 4.30
332 333 1.143277 GGAGAGAGTATGACGGAGGGA 59.857 57.143 0.00 0.00 0.00 4.20
333 334 2.500229 GAGAGAGTATGACGGAGGGAG 58.500 57.143 0.00 0.00 0.00 4.30
336 337 3.653836 AGAGAGTATGACGGAGGGAGTAT 59.346 47.826 0.00 0.00 0.00 2.12
340 341 6.005198 AGAGTATGACGGAGGGAGTATTAAG 58.995 44.000 0.00 0.00 0.00 1.85
357 358 9.595357 GAGTATTAAGTTGCAAGTTTAGTTGTC 57.405 33.333 23.82 10.88 0.00 3.18
363 365 0.879090 CAAGTTTAGTTGTCGGGGGC 59.121 55.000 0.00 0.00 0.00 5.80
380 382 0.251073 GGCACCGTGGTAACTGGTAT 59.749 55.000 0.00 0.00 42.96 2.73
394 397 6.209788 GGTAACTGGTATGAATCCACCAAAAA 59.790 38.462 5.51 0.00 44.06 1.94
395 398 6.933514 AACTGGTATGAATCCACCAAAAAT 57.066 33.333 5.51 0.00 44.06 1.82
562 584 4.978083 TGTGTCGATTTAGTACTCCCTC 57.022 45.455 0.00 0.00 0.00 4.30
566 588 2.947652 TCGATTTAGTACTCCCTCCGTG 59.052 50.000 0.00 0.00 0.00 4.94
568 590 2.226962 TTTAGTACTCCCTCCGTGCT 57.773 50.000 0.00 0.00 0.00 4.40
569 591 3.370840 TTTAGTACTCCCTCCGTGCTA 57.629 47.619 0.00 0.00 0.00 3.49
574 596 3.518303 AGTACTCCCTCCGTGCTAAAATT 59.482 43.478 0.00 0.00 0.00 1.82
581 603 4.003648 CCTCCGTGCTAAAATTCTTGTCT 58.996 43.478 0.00 0.00 0.00 3.41
583 605 5.642063 CCTCCGTGCTAAAATTCTTGTCTTA 59.358 40.000 0.00 0.00 0.00 2.10
584 606 6.183360 CCTCCGTGCTAAAATTCTTGTCTTAG 60.183 42.308 0.00 0.00 0.00 2.18
586 608 7.103641 TCCGTGCTAAAATTCTTGTCTTAGAT 58.896 34.615 0.00 0.00 0.00 1.98
587 609 7.606456 TCCGTGCTAAAATTCTTGTCTTAGATT 59.394 33.333 0.00 0.00 0.00 2.40
590 612 9.899226 GTGCTAAAATTCTTGTCTTAGATTTGT 57.101 29.630 0.00 0.00 0.00 2.83
608 630 7.726216 AGATTTGTCTGAATACGGATGTATCA 58.274 34.615 0.00 0.00 40.42 2.15
611 633 6.465439 TGTCTGAATACGGATGTATCAAGT 57.535 37.500 0.00 0.00 40.42 3.16
612 634 6.504398 TGTCTGAATACGGATGTATCAAGTC 58.496 40.000 0.00 0.00 40.42 3.01
613 635 6.096282 TGTCTGAATACGGATGTATCAAGTCA 59.904 38.462 0.00 0.00 40.42 3.41
614 636 6.418226 GTCTGAATACGGATGTATCAAGTCAC 59.582 42.308 0.00 0.00 40.42 3.67
617 639 7.272244 TGAATACGGATGTATCAAGTCACATT 58.728 34.615 0.00 0.00 40.42 2.71
623 645 8.255206 ACGGATGTATCAAGTCACATTTTAGTA 58.745 33.333 0.00 0.00 35.55 1.82
624 646 9.261180 CGGATGTATCAAGTCACATTTTAGTAT 57.739 33.333 0.00 0.00 35.55 2.12
700 722 2.758736 TGAAATGGGGCGGAATTTTG 57.241 45.000 0.00 0.00 0.00 2.44
714 736 3.306294 GGAATTTTGGAAGGAGGCAAGTG 60.306 47.826 0.00 0.00 0.00 3.16
760 784 2.099756 GCTGAATAAGTGCCACATTCCC 59.900 50.000 0.00 0.00 0.00 3.97
844 874 3.011085 CACAACTTGCAGCTCTCCA 57.989 52.632 0.00 0.00 0.00 3.86
986 1654 3.998672 GGTCTCCGGCGTCAACCA 61.999 66.667 6.01 0.00 0.00 3.67
1427 2101 3.304190 GCGCTCTACTACTAGCCTTCTTC 60.304 52.174 0.00 0.00 35.22 2.87
1487 2194 1.250154 CCCTGGCAAAGGCAAATCGA 61.250 55.000 0.00 0.00 45.89 3.59
1637 2370 4.967084 TTTTAGGACCTGCTGTCTTGTA 57.033 40.909 3.53 0.00 43.89 2.41
1643 2376 3.526534 GACCTGCTGTCTTGTAGGAATC 58.473 50.000 5.70 0.00 41.46 2.52
1651 2384 1.210478 TCTTGTAGGAATCAGGGCTGC 59.790 52.381 0.00 0.00 0.00 5.25
1670 2403 5.987953 GGCTGCAATTTCTTTTTCTTCTTCT 59.012 36.000 0.50 0.00 0.00 2.85
1672 2405 7.307042 GGCTGCAATTTCTTTTTCTTCTTCTTC 60.307 37.037 0.50 0.00 0.00 2.87
1673 2406 7.437565 GCTGCAATTTCTTTTTCTTCTTCTTCT 59.562 33.333 0.00 0.00 0.00 2.85
1674 2407 9.310716 CTGCAATTTCTTTTTCTTCTTCTTCTT 57.689 29.630 0.00 0.00 0.00 2.52
1675 2408 9.305925 TGCAATTTCTTTTTCTTCTTCTTCTTC 57.694 29.630 0.00 0.00 0.00 2.87
1676 2409 9.526713 GCAATTTCTTTTTCTTCTTCTTCTTCT 57.473 29.630 0.00 0.00 0.00 2.85
1682 2415 9.898152 TCTTTTTCTTCTTCTTCTTCTTCTTCT 57.102 29.630 0.00 0.00 0.00 2.85
1685 2418 9.898152 TTTTCTTCTTCTTCTTCTTCTTCTTCT 57.102 29.630 0.00 0.00 0.00 2.85
1686 2419 9.898152 TTTCTTCTTCTTCTTCTTCTTCTTCTT 57.102 29.630 0.00 0.00 0.00 2.52
1687 2420 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
1688 2421 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
1689 2422 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
1803 2544 2.099141 TGGCAGAGATTTTGAGGTCG 57.901 50.000 0.00 0.00 0.00 4.79
1895 2645 1.067295 TTGCTCCAAGATCTGGTGGT 58.933 50.000 12.27 0.00 46.51 4.16
1896 2646 0.615331 TGCTCCAAGATCTGGTGGTC 59.385 55.000 12.27 7.22 46.51 4.02
1919 2672 3.191162 TGTAGAATGCAATGCACTTCCAC 59.809 43.478 11.23 14.30 43.04 4.02
1925 2678 0.734889 CAATGCACTTCCACGGATCC 59.265 55.000 0.00 0.00 0.00 3.36
1941 2699 1.690219 ATCCCCAGCCAGCTCTAACG 61.690 60.000 0.00 0.00 0.00 3.18
2000 2762 4.276678 TGCTATGATTGAGCATTTGGTAGC 59.723 41.667 0.00 0.00 44.89 3.58
2081 2854 3.707793 CGTTCAGGTTCAGTAGATAGCC 58.292 50.000 0.00 0.00 0.00 3.93
2083 2856 2.307768 TCAGGTTCAGTAGATAGCCGG 58.692 52.381 0.00 0.00 0.00 6.13
2118 2891 4.987285 GCATATAGTCTGTGTGTCCATCAG 59.013 45.833 0.00 0.00 0.00 2.90
2146 2919 6.639632 TGGAATTTCCAGAACTTTGAAGAG 57.360 37.500 14.24 0.00 42.67 2.85
2151 2925 8.980481 AATTTCCAGAACTTTGAAGAGAGTTA 57.020 30.769 0.00 0.00 36.31 2.24
2157 2931 5.409826 AGAACTTTGAAGAGAGTTAATGGCG 59.590 40.000 0.00 0.00 36.31 5.69
2163 2937 3.678056 AGAGAGTTAATGGCGTGAACA 57.322 42.857 9.59 0.00 0.00 3.18
2208 2982 1.330521 GTTCGATGCGTATGTGCCAAT 59.669 47.619 0.00 0.00 0.00 3.16
2238 3015 5.104941 TGAAAGGGACGAGATGACAATGTAT 60.105 40.000 0.00 0.00 0.00 2.29
2245 3022 3.303593 CGAGATGACAATGTATTGCAGGC 60.304 47.826 4.58 0.00 41.38 4.85
2258 3035 2.219080 TGCAGGCATTGGAGAAATCA 57.781 45.000 0.00 0.00 0.00 2.57
2280 3057 5.008019 TCAGACAGAACAATGCTGTTTCTTC 59.992 40.000 0.00 0.00 45.98 2.87
2326 3108 5.817296 TCCTTGCATCACACATATGACTTAC 59.183 40.000 10.38 0.00 0.00 2.34
2331 3113 5.400782 GCATCACACATATGACTTACGAGAG 59.599 44.000 10.38 0.00 0.00 3.20
2333 3115 4.640647 TCACACATATGACTTACGAGAGCT 59.359 41.667 10.38 0.00 0.00 4.09
2338 3120 5.177881 ACATATGACTTACGAGAGCTAGTCG 59.822 44.000 10.38 14.77 43.62 4.18
2350 3132 4.013728 AGAGCTAGTCGTCACATTCTTCT 58.986 43.478 0.00 0.00 0.00 2.85
2355 3137 7.152645 AGCTAGTCGTCACATTCTTCTAAAAA 58.847 34.615 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.938280 TGTAATTACACATCTACTAGTGCTTTT 57.062 29.630 14.35 0.00 39.30 2.27
4 5 9.534565 CATGTAATTACACATCTACTAGTGCTT 57.465 33.333 20.26 0.00 39.30 3.91
5 6 8.914011 TCATGTAATTACACATCTACTAGTGCT 58.086 33.333 20.26 0.00 39.30 4.40
6 7 9.186323 CTCATGTAATTACACATCTACTAGTGC 57.814 37.037 20.26 0.00 39.30 4.40
7 8 9.684448 CCTCATGTAATTACACATCTACTAGTG 57.316 37.037 20.26 10.61 39.30 2.74
8 9 8.361139 GCCTCATGTAATTACACATCTACTAGT 58.639 37.037 20.26 0.00 39.30 2.57
9 10 7.815068 GGCCTCATGTAATTACACATCTACTAG 59.185 40.741 20.26 8.75 39.30 2.57
10 11 7.289084 TGGCCTCATGTAATTACACATCTACTA 59.711 37.037 20.26 4.70 39.30 1.82
11 12 6.099701 TGGCCTCATGTAATTACACATCTACT 59.900 38.462 20.26 0.08 39.30 2.57
12 13 6.288294 TGGCCTCATGTAATTACACATCTAC 58.712 40.000 20.26 10.46 39.30 2.59
13 14 6.493189 TGGCCTCATGTAATTACACATCTA 57.507 37.500 20.26 4.24 39.30 1.98
14 15 5.372343 TGGCCTCATGTAATTACACATCT 57.628 39.130 20.26 1.97 39.30 2.90
15 16 5.822519 TCTTGGCCTCATGTAATTACACATC 59.177 40.000 20.26 8.19 39.30 3.06
16 17 5.590259 GTCTTGGCCTCATGTAATTACACAT 59.410 40.000 20.26 4.18 39.30 3.21
17 18 4.941263 GTCTTGGCCTCATGTAATTACACA 59.059 41.667 20.26 9.95 39.30 3.72
18 19 4.941263 TGTCTTGGCCTCATGTAATTACAC 59.059 41.667 20.26 7.45 39.30 2.90
19 20 5.172687 TGTCTTGGCCTCATGTAATTACA 57.827 39.130 20.14 20.14 40.98 2.41
20 21 6.699575 AATGTCTTGGCCTCATGTAATTAC 57.300 37.500 8.75 8.75 0.00 1.89
21 22 7.395772 TGAAAATGTCTTGGCCTCATGTAATTA 59.604 33.333 3.32 0.00 0.00 1.40
22 23 6.211184 TGAAAATGTCTTGGCCTCATGTAATT 59.789 34.615 3.32 0.00 0.00 1.40
23 24 5.716228 TGAAAATGTCTTGGCCTCATGTAAT 59.284 36.000 3.32 0.00 0.00 1.89
24 25 5.076182 TGAAAATGTCTTGGCCTCATGTAA 58.924 37.500 3.32 0.00 0.00 2.41
25 26 4.661222 TGAAAATGTCTTGGCCTCATGTA 58.339 39.130 3.32 0.00 0.00 2.29
26 27 3.499338 TGAAAATGTCTTGGCCTCATGT 58.501 40.909 3.32 0.00 0.00 3.21
27 28 4.081862 ACATGAAAATGTCTTGGCCTCATG 60.082 41.667 18.97 18.97 42.69 3.07
28 29 4.081862 CACATGAAAATGTCTTGGCCTCAT 60.082 41.667 3.32 0.00 36.04 2.90
29 30 3.256383 CACATGAAAATGTCTTGGCCTCA 59.744 43.478 3.32 0.00 36.04 3.86
30 31 3.256631 ACACATGAAAATGTCTTGGCCTC 59.743 43.478 3.32 0.00 36.04 4.70
31 32 3.233507 ACACATGAAAATGTCTTGGCCT 58.766 40.909 3.32 0.00 36.04 5.19
32 33 3.665745 ACACATGAAAATGTCTTGGCC 57.334 42.857 0.00 0.00 36.04 5.36
33 34 8.408601 AGAATATACACATGAAAATGTCTTGGC 58.591 33.333 0.00 0.00 36.04 4.52
55 56 8.940952 GTGCTAGAAAATGAAGTGAACTAGAAT 58.059 33.333 0.00 0.00 0.00 2.40
56 57 7.116376 CGTGCTAGAAAATGAAGTGAACTAGAA 59.884 37.037 0.00 0.00 0.00 2.10
57 58 6.586463 CGTGCTAGAAAATGAAGTGAACTAGA 59.414 38.462 0.00 0.00 0.00 2.43
58 59 6.586463 TCGTGCTAGAAAATGAAGTGAACTAG 59.414 38.462 0.00 0.00 0.00 2.57
59 60 6.365247 GTCGTGCTAGAAAATGAAGTGAACTA 59.635 38.462 0.00 0.00 0.00 2.24
60 61 5.177696 GTCGTGCTAGAAAATGAAGTGAACT 59.822 40.000 0.00 0.00 0.00 3.01
61 62 5.177696 AGTCGTGCTAGAAAATGAAGTGAAC 59.822 40.000 0.00 0.00 0.00 3.18
62 63 5.297547 AGTCGTGCTAGAAAATGAAGTGAA 58.702 37.500 0.00 0.00 0.00 3.18
63 64 4.883083 AGTCGTGCTAGAAAATGAAGTGA 58.117 39.130 0.00 0.00 0.00 3.41
64 65 5.597813 AAGTCGTGCTAGAAAATGAAGTG 57.402 39.130 0.00 0.00 0.00 3.16
65 66 5.527582 ACAAAGTCGTGCTAGAAAATGAAGT 59.472 36.000 0.00 0.00 0.00 3.01
66 67 5.990408 ACAAAGTCGTGCTAGAAAATGAAG 58.010 37.500 0.00 0.00 0.00 3.02
67 68 6.183360 ACAACAAAGTCGTGCTAGAAAATGAA 60.183 34.615 0.00 0.00 0.00 2.57
68 69 5.295787 ACAACAAAGTCGTGCTAGAAAATGA 59.704 36.000 0.00 0.00 0.00 2.57
69 70 5.510671 ACAACAAAGTCGTGCTAGAAAATG 58.489 37.500 0.00 0.00 0.00 2.32
70 71 5.751243 ACAACAAAGTCGTGCTAGAAAAT 57.249 34.783 0.00 0.00 0.00 1.82
71 72 5.448089 GGAACAACAAAGTCGTGCTAGAAAA 60.448 40.000 0.00 0.00 0.00 2.29
72 73 4.034742 GGAACAACAAAGTCGTGCTAGAAA 59.965 41.667 0.00 0.00 0.00 2.52
73 74 3.558418 GGAACAACAAAGTCGTGCTAGAA 59.442 43.478 0.00 0.00 0.00 2.10
74 75 3.128349 GGAACAACAAAGTCGTGCTAGA 58.872 45.455 0.00 0.00 0.00 2.43
75 76 3.131396 AGGAACAACAAAGTCGTGCTAG 58.869 45.455 0.00 0.00 0.00 3.42
76 77 3.188159 AGGAACAACAAAGTCGTGCTA 57.812 42.857 0.00 0.00 0.00 3.49
77 78 2.038387 AGGAACAACAAAGTCGTGCT 57.962 45.000 0.00 0.00 0.00 4.40
78 79 2.870411 AGTAGGAACAACAAAGTCGTGC 59.130 45.455 0.00 0.00 0.00 5.34
79 80 6.592798 TTTAGTAGGAACAACAAAGTCGTG 57.407 37.500 0.00 0.00 0.00 4.35
80 81 7.636326 CAATTTAGTAGGAACAACAAAGTCGT 58.364 34.615 0.00 0.00 0.00 4.34
81 82 6.577427 GCAATTTAGTAGGAACAACAAAGTCG 59.423 38.462 0.00 0.00 0.00 4.18
82 83 7.422399 TGCAATTTAGTAGGAACAACAAAGTC 58.578 34.615 0.00 0.00 0.00 3.01
83 84 7.341445 TGCAATTTAGTAGGAACAACAAAGT 57.659 32.000 0.00 0.00 0.00 2.66
84 85 8.816640 ATTGCAATTTAGTAGGAACAACAAAG 57.183 30.769 5.99 0.00 0.00 2.77
85 86 9.606631 AAATTGCAATTTAGTAGGAACAACAAA 57.393 25.926 31.00 0.00 36.88 2.83
86 87 9.606631 AAAATTGCAATTTAGTAGGAACAACAA 57.393 25.926 31.87 0.00 37.62 2.83
87 88 9.039870 CAAAATTGCAATTTAGTAGGAACAACA 57.960 29.630 31.87 0.00 37.62 3.33
88 89 9.040939 ACAAAATTGCAATTTAGTAGGAACAAC 57.959 29.630 31.87 0.00 37.62 3.32
89 90 9.606631 AACAAAATTGCAATTTAGTAGGAACAA 57.393 25.926 31.87 0.00 37.62 2.83
90 91 9.255304 GAACAAAATTGCAATTTAGTAGGAACA 57.745 29.630 31.87 0.00 37.62 3.18
91 92 8.708742 GGAACAAAATTGCAATTTAGTAGGAAC 58.291 33.333 31.87 18.60 37.62 3.62
92 93 8.646900 AGGAACAAAATTGCAATTTAGTAGGAA 58.353 29.630 31.87 0.00 37.62 3.36
93 94 8.189119 AGGAACAAAATTGCAATTTAGTAGGA 57.811 30.769 31.87 0.00 37.62 2.94
94 95 9.353999 GTAGGAACAAAATTGCAATTTAGTAGG 57.646 33.333 31.87 21.53 37.62 3.18
97 98 8.088365 GGAGTAGGAACAAAATTGCAATTTAGT 58.912 33.333 31.87 21.43 37.62 2.24
98 99 7.545615 GGGAGTAGGAACAAAATTGCAATTTAG 59.454 37.037 31.87 15.45 37.62 1.85
99 100 7.234577 AGGGAGTAGGAACAAAATTGCAATTTA 59.765 33.333 31.87 15.66 37.62 1.40
100 101 6.043127 AGGGAGTAGGAACAAAATTGCAATTT 59.957 34.615 27.73 27.73 40.15 1.82
101 102 5.543790 AGGGAGTAGGAACAAAATTGCAATT 59.456 36.000 18.99 18.99 0.00 2.32
102 103 5.086621 AGGGAGTAGGAACAAAATTGCAAT 58.913 37.500 5.99 5.99 0.00 3.56
103 104 4.479158 AGGGAGTAGGAACAAAATTGCAA 58.521 39.130 0.00 0.00 0.00 4.08
104 105 4.079253 GAGGGAGTAGGAACAAAATTGCA 58.921 43.478 0.00 0.00 0.00 4.08
105 106 4.156739 CAGAGGGAGTAGGAACAAAATTGC 59.843 45.833 0.00 0.00 0.00 3.56
106 107 5.316987 ACAGAGGGAGTAGGAACAAAATTG 58.683 41.667 0.00 0.00 0.00 2.32
107 108 5.515008 GGACAGAGGGAGTAGGAACAAAATT 60.515 44.000 0.00 0.00 0.00 1.82
108 109 4.019231 GGACAGAGGGAGTAGGAACAAAAT 60.019 45.833 0.00 0.00 0.00 1.82
109 110 3.326880 GGACAGAGGGAGTAGGAACAAAA 59.673 47.826 0.00 0.00 0.00 2.44
110 111 2.904434 GGACAGAGGGAGTAGGAACAAA 59.096 50.000 0.00 0.00 0.00 2.83
111 112 2.537143 GGACAGAGGGAGTAGGAACAA 58.463 52.381 0.00 0.00 0.00 2.83
112 113 1.273098 GGGACAGAGGGAGTAGGAACA 60.273 57.143 0.00 0.00 0.00 3.18
113 114 1.273098 TGGGACAGAGGGAGTAGGAAC 60.273 57.143 0.00 0.00 0.00 3.62
114 115 1.089978 TGGGACAGAGGGAGTAGGAA 58.910 55.000 0.00 0.00 0.00 3.36
115 116 2.815019 TGGGACAGAGGGAGTAGGA 58.185 57.895 0.00 0.00 0.00 2.94
127 128 8.155816 GACGTTTTTGTGTCAAATAATGGGACA 61.156 37.037 0.00 0.00 39.09 4.02
128 129 5.980715 ACGTTTTTGTGTCAAATAATGGGAC 59.019 36.000 0.00 0.00 0.00 4.46
129 130 6.039941 AGACGTTTTTGTGTCAAATAATGGGA 59.960 34.615 0.00 0.00 37.58 4.37
130 131 6.212955 AGACGTTTTTGTGTCAAATAATGGG 58.787 36.000 0.00 0.00 37.58 4.00
131 132 7.692908 AAGACGTTTTTGTGTCAAATAATGG 57.307 32.000 0.00 0.00 37.58 3.16
132 133 9.227490 TGTAAGACGTTTTTGTGTCAAATAATG 57.773 29.630 0.00 3.19 37.58 1.90
133 134 9.959749 ATGTAAGACGTTTTTGTGTCAAATAAT 57.040 25.926 0.00 0.00 37.58 1.28
134 135 9.790389 AATGTAAGACGTTTTTGTGTCAAATAA 57.210 25.926 0.00 0.00 37.58 1.40
136 137 9.959749 ATAATGTAAGACGTTTTTGTGTCAAAT 57.040 25.926 0.00 0.00 37.58 2.32
138 139 9.866936 GTATAATGTAAGACGTTTTTGTGTCAA 57.133 29.630 0.00 0.00 37.58 3.18
139 140 9.263538 AGTATAATGTAAGACGTTTTTGTGTCA 57.736 29.630 0.00 0.00 37.58 3.58
140 141 9.737025 GAGTATAATGTAAGACGTTTTTGTGTC 57.263 33.333 0.00 0.00 35.33 3.67
141 142 9.485206 AGAGTATAATGTAAGACGTTTTTGTGT 57.515 29.630 0.00 0.00 0.00 3.72
145 146 9.821662 GCAAAGAGTATAATGTAAGACGTTTTT 57.178 29.630 0.00 0.00 0.00 1.94
146 147 9.216117 AGCAAAGAGTATAATGTAAGACGTTTT 57.784 29.630 0.00 0.00 0.00 2.43
147 148 8.773404 AGCAAAGAGTATAATGTAAGACGTTT 57.227 30.769 0.00 0.00 0.00 3.60
148 149 9.865321 TTAGCAAAGAGTATAATGTAAGACGTT 57.135 29.630 0.00 0.00 0.00 3.99
149 150 9.865321 TTTAGCAAAGAGTATAATGTAAGACGT 57.135 29.630 0.00 0.00 0.00 4.34
183 184 9.996554 TGTAGTCATTTGTTGAAATCTCTAGAA 57.003 29.630 0.00 0.00 35.70 2.10
188 189 9.941664 CCATATGTAGTCATTTGTTGAAATCTC 57.058 33.333 1.24 0.00 35.70 2.75
189 190 9.685276 TCCATATGTAGTCATTTGTTGAAATCT 57.315 29.630 1.24 0.00 35.70 2.40
190 191 9.941664 CTCCATATGTAGTCATTTGTTGAAATC 57.058 33.333 1.24 0.00 35.70 2.17
191 192 8.408601 GCTCCATATGTAGTCATTTGTTGAAAT 58.591 33.333 1.24 0.00 35.70 2.17
192 193 7.392953 TGCTCCATATGTAGTCATTTGTTGAAA 59.607 33.333 1.24 0.00 35.70 2.69
193 194 6.883756 TGCTCCATATGTAGTCATTTGTTGAA 59.116 34.615 1.24 0.00 35.70 2.69
194 195 6.413892 TGCTCCATATGTAGTCATTTGTTGA 58.586 36.000 1.24 0.00 35.70 3.18
195 196 6.682423 TGCTCCATATGTAGTCATTTGTTG 57.318 37.500 1.24 0.00 35.70 3.33
196 197 7.701539 TTTGCTCCATATGTAGTCATTTGTT 57.298 32.000 1.24 0.00 35.70 2.83
197 198 7.701539 TTTTGCTCCATATGTAGTCATTTGT 57.298 32.000 1.24 0.00 35.70 2.83
198 199 8.407832 TCATTTTGCTCCATATGTAGTCATTTG 58.592 33.333 1.24 0.00 35.70 2.32
199 200 8.523915 TCATTTTGCTCCATATGTAGTCATTT 57.476 30.769 1.24 0.00 35.70 2.32
200 201 7.776969 ACTCATTTTGCTCCATATGTAGTCATT 59.223 33.333 1.24 0.00 35.70 2.57
201 202 7.228108 CACTCATTTTGCTCCATATGTAGTCAT 59.772 37.037 1.24 0.00 38.00 3.06
202 203 6.539826 CACTCATTTTGCTCCATATGTAGTCA 59.460 38.462 1.24 0.00 0.00 3.41
203 204 6.763135 TCACTCATTTTGCTCCATATGTAGTC 59.237 38.462 1.24 0.00 0.00 2.59
204 205 6.653020 TCACTCATTTTGCTCCATATGTAGT 58.347 36.000 1.24 0.00 0.00 2.73
205 206 7.558161 TTCACTCATTTTGCTCCATATGTAG 57.442 36.000 1.24 0.00 0.00 2.74
206 207 7.994911 AGATTCACTCATTTTGCTCCATATGTA 59.005 33.333 1.24 0.00 0.00 2.29
207 208 6.832384 AGATTCACTCATTTTGCTCCATATGT 59.168 34.615 1.24 0.00 0.00 2.29
208 209 7.139392 CAGATTCACTCATTTTGCTCCATATG 58.861 38.462 0.00 0.00 0.00 1.78
209 210 6.238953 GCAGATTCACTCATTTTGCTCCATAT 60.239 38.462 0.00 0.00 0.00 1.78
210 211 5.066893 GCAGATTCACTCATTTTGCTCCATA 59.933 40.000 0.00 0.00 0.00 2.74
211 212 4.142227 GCAGATTCACTCATTTTGCTCCAT 60.142 41.667 0.00 0.00 0.00 3.41
212 213 3.192001 GCAGATTCACTCATTTTGCTCCA 59.808 43.478 0.00 0.00 0.00 3.86
213 214 3.192001 TGCAGATTCACTCATTTTGCTCC 59.808 43.478 0.00 0.00 0.00 4.70
214 215 4.082895 AGTGCAGATTCACTCATTTTGCTC 60.083 41.667 0.00 0.00 43.28 4.26
215 216 3.825014 AGTGCAGATTCACTCATTTTGCT 59.175 39.130 0.00 0.00 43.28 3.91
216 217 4.170292 AGTGCAGATTCACTCATTTTGC 57.830 40.909 0.00 0.00 43.28 3.68
225 226 7.533426 ACATATTTTTCAGAGTGCAGATTCAC 58.467 34.615 0.00 0.00 37.24 3.18
226 227 7.609146 AGACATATTTTTCAGAGTGCAGATTCA 59.391 33.333 0.00 0.00 0.00 2.57
227 228 7.983307 AGACATATTTTTCAGAGTGCAGATTC 58.017 34.615 0.00 0.00 0.00 2.52
228 229 7.934855 AGACATATTTTTCAGAGTGCAGATT 57.065 32.000 0.00 0.00 0.00 2.40
269 270 8.433421 TTTGTAGAGATTTCGAATGGATTACC 57.567 34.615 0.00 0.00 0.00 2.85
270 271 9.314321 TCTTTGTAGAGATTTCGAATGGATTAC 57.686 33.333 0.00 1.05 0.00 1.89
271 272 9.314321 GTCTTTGTAGAGATTTCGAATGGATTA 57.686 33.333 0.00 0.00 0.00 1.75
272 273 7.824289 TGTCTTTGTAGAGATTTCGAATGGATT 59.176 33.333 0.00 0.00 0.00 3.01
273 274 7.331026 TGTCTTTGTAGAGATTTCGAATGGAT 58.669 34.615 0.00 0.00 0.00 3.41
274 275 6.697395 TGTCTTTGTAGAGATTTCGAATGGA 58.303 36.000 0.00 0.00 0.00 3.41
275 276 6.968131 TGTCTTTGTAGAGATTTCGAATGG 57.032 37.500 0.00 0.00 0.00 3.16
287 288 9.158233 CCGTTCCTAAATATTTGTCTTTGTAGA 57.842 33.333 11.05 0.00 0.00 2.59
288 289 9.158233 TCCGTTCCTAAATATTTGTCTTTGTAG 57.842 33.333 11.05 0.00 0.00 2.74
289 290 9.158233 CTCCGTTCCTAAATATTTGTCTTTGTA 57.842 33.333 11.05 0.00 0.00 2.41
290 291 7.881232 TCTCCGTTCCTAAATATTTGTCTTTGT 59.119 33.333 11.05 0.00 0.00 2.83
291 292 8.263940 TCTCCGTTCCTAAATATTTGTCTTTG 57.736 34.615 11.05 0.00 0.00 2.77
292 293 8.319146 TCTCTCCGTTCCTAAATATTTGTCTTT 58.681 33.333 11.05 0.00 0.00 2.52
293 294 7.848128 TCTCTCCGTTCCTAAATATTTGTCTT 58.152 34.615 11.05 0.00 0.00 3.01
294 295 7.124448 ACTCTCTCCGTTCCTAAATATTTGTCT 59.876 37.037 11.05 0.00 0.00 3.41
295 296 7.266400 ACTCTCTCCGTTCCTAAATATTTGTC 58.734 38.462 11.05 0.00 0.00 3.18
296 297 7.184067 ACTCTCTCCGTTCCTAAATATTTGT 57.816 36.000 11.05 0.00 0.00 2.83
297 298 9.197694 CATACTCTCTCCGTTCCTAAATATTTG 57.802 37.037 11.05 1.40 0.00 2.32
298 299 9.144298 TCATACTCTCTCCGTTCCTAAATATTT 57.856 33.333 5.89 5.89 0.00 1.40
299 300 8.578151 GTCATACTCTCTCCGTTCCTAAATATT 58.422 37.037 0.00 0.00 0.00 1.28
300 301 7.094720 CGTCATACTCTCTCCGTTCCTAAATAT 60.095 40.741 0.00 0.00 0.00 1.28
301 302 6.204301 CGTCATACTCTCTCCGTTCCTAAATA 59.796 42.308 0.00 0.00 0.00 1.40
302 303 5.008811 CGTCATACTCTCTCCGTTCCTAAAT 59.991 44.000 0.00 0.00 0.00 1.40
303 304 4.334759 CGTCATACTCTCTCCGTTCCTAAA 59.665 45.833 0.00 0.00 0.00 1.85
304 305 3.875727 CGTCATACTCTCTCCGTTCCTAA 59.124 47.826 0.00 0.00 0.00 2.69
305 306 3.464907 CGTCATACTCTCTCCGTTCCTA 58.535 50.000 0.00 0.00 0.00 2.94
306 307 2.290464 CGTCATACTCTCTCCGTTCCT 58.710 52.381 0.00 0.00 0.00 3.36
307 308 1.334243 CCGTCATACTCTCTCCGTTCC 59.666 57.143 0.00 0.00 0.00 3.62
308 309 2.286872 TCCGTCATACTCTCTCCGTTC 58.713 52.381 0.00 0.00 0.00 3.95
309 310 2.290464 CTCCGTCATACTCTCTCCGTT 58.710 52.381 0.00 0.00 0.00 4.44
310 311 1.475392 CCTCCGTCATACTCTCTCCGT 60.475 57.143 0.00 0.00 0.00 4.69
311 312 1.231221 CCTCCGTCATACTCTCTCCG 58.769 60.000 0.00 0.00 0.00 4.63
312 313 1.143277 TCCCTCCGTCATACTCTCTCC 59.857 57.143 0.00 0.00 0.00 3.71
313 314 2.158726 ACTCCCTCCGTCATACTCTCTC 60.159 54.545 0.00 0.00 0.00 3.20
314 315 1.847737 ACTCCCTCCGTCATACTCTCT 59.152 52.381 0.00 0.00 0.00 3.10
315 316 2.351706 ACTCCCTCCGTCATACTCTC 57.648 55.000 0.00 0.00 0.00 3.20
316 317 4.456662 AATACTCCCTCCGTCATACTCT 57.543 45.455 0.00 0.00 0.00 3.24
317 318 5.769162 ACTTAATACTCCCTCCGTCATACTC 59.231 44.000 0.00 0.00 0.00 2.59
318 319 5.703310 ACTTAATACTCCCTCCGTCATACT 58.297 41.667 0.00 0.00 0.00 2.12
319 320 6.214399 CAACTTAATACTCCCTCCGTCATAC 58.786 44.000 0.00 0.00 0.00 2.39
320 321 5.221382 GCAACTTAATACTCCCTCCGTCATA 60.221 44.000 0.00 0.00 0.00 2.15
321 322 4.443034 GCAACTTAATACTCCCTCCGTCAT 60.443 45.833 0.00 0.00 0.00 3.06
322 323 3.118884 GCAACTTAATACTCCCTCCGTCA 60.119 47.826 0.00 0.00 0.00 4.35
323 324 3.118884 TGCAACTTAATACTCCCTCCGTC 60.119 47.826 0.00 0.00 0.00 4.79
324 325 2.835764 TGCAACTTAATACTCCCTCCGT 59.164 45.455 0.00 0.00 0.00 4.69
325 326 3.536956 TGCAACTTAATACTCCCTCCG 57.463 47.619 0.00 0.00 0.00 4.63
326 327 4.844884 ACTTGCAACTTAATACTCCCTCC 58.155 43.478 0.00 0.00 0.00 4.30
327 328 6.819397 AAACTTGCAACTTAATACTCCCTC 57.181 37.500 0.00 0.00 0.00 4.30
328 329 7.459234 ACTAAACTTGCAACTTAATACTCCCT 58.541 34.615 0.00 0.00 0.00 4.20
329 330 7.683437 ACTAAACTTGCAACTTAATACTCCC 57.317 36.000 0.00 0.00 0.00 4.30
330 331 8.565416 ACAACTAAACTTGCAACTTAATACTCC 58.435 33.333 0.00 0.00 0.00 3.85
331 332 9.595357 GACAACTAAACTTGCAACTTAATACTC 57.405 33.333 0.00 0.00 0.00 2.59
332 333 8.280497 CGACAACTAAACTTGCAACTTAATACT 58.720 33.333 0.00 0.00 0.00 2.12
333 334 7.532884 CCGACAACTAAACTTGCAACTTAATAC 59.467 37.037 0.00 0.00 0.00 1.89
336 337 5.220892 CCCGACAACTAAACTTGCAACTTAA 60.221 40.000 0.00 0.00 0.00 1.85
340 341 2.287368 CCCCGACAACTAAACTTGCAAC 60.287 50.000 0.00 0.00 0.00 4.17
363 365 3.322211 TTCATACCAGTTACCACGGTG 57.678 47.619 0.00 0.00 33.54 4.94
366 368 3.869246 GTGGATTCATACCAGTTACCACG 59.131 47.826 0.00 0.00 38.14 4.94
375 377 8.601047 TTCATATTTTTGGTGGATTCATACCA 57.399 30.769 7.67 7.67 44.79 3.25
461 483 2.163412 GCCATGAATAACGCCTTGTTCA 59.837 45.455 9.36 9.36 40.54 3.18
522 544 4.023536 ACACAAACTTGGCGAATACGAATT 60.024 37.500 0.00 0.00 42.66 2.17
562 584 6.721571 TCTAAGACAAGAATTTTAGCACGG 57.278 37.500 0.00 0.00 0.00 4.94
574 596 7.759886 CCGTATTCAGACAAATCTAAGACAAGA 59.240 37.037 0.00 0.00 32.25 3.02
581 603 9.692749 GATACATCCGTATTCAGACAAATCTAA 57.307 33.333 0.00 0.00 38.48 2.10
583 605 7.726216 TGATACATCCGTATTCAGACAAATCT 58.274 34.615 0.00 0.00 38.48 2.40
584 606 7.946655 TGATACATCCGTATTCAGACAAATC 57.053 36.000 0.00 0.00 38.48 2.17
586 608 7.327975 ACTTGATACATCCGTATTCAGACAAA 58.672 34.615 0.00 0.00 38.48 2.83
587 609 6.873997 ACTTGATACATCCGTATTCAGACAA 58.126 36.000 0.00 0.00 38.48 3.18
590 612 6.096282 TGTGACTTGATACATCCGTATTCAGA 59.904 38.462 0.00 0.00 38.48 3.27
591 613 6.273071 TGTGACTTGATACATCCGTATTCAG 58.727 40.000 0.00 0.00 38.48 3.02
593 615 7.715265 AATGTGACTTGATACATCCGTATTC 57.285 36.000 0.00 0.00 38.48 1.75
598 620 7.539712 ACTAAAATGTGACTTGATACATCCG 57.460 36.000 0.00 0.00 36.56 4.18
653 675 8.569596 ACTCCCTCCATCCTAAAATTCTTATTT 58.430 33.333 0.00 0.00 35.49 1.40
654 676 8.119062 ACTCCCTCCATCCTAAAATTCTTATT 57.881 34.615 0.00 0.00 0.00 1.40
656 678 8.660435 CATACTCCCTCCATCCTAAAATTCTTA 58.340 37.037 0.00 0.00 0.00 2.10
660 682 7.465900 TTCATACTCCCTCCATCCTAAAATT 57.534 36.000 0.00 0.00 0.00 1.82
666 688 3.654806 CCATTTCATACTCCCTCCATCCT 59.345 47.826 0.00 0.00 0.00 3.24
670 692 2.135189 CCCCATTTCATACTCCCTCCA 58.865 52.381 0.00 0.00 0.00 3.86
675 697 0.472471 TCCGCCCCATTTCATACTCC 59.528 55.000 0.00 0.00 0.00 3.85
700 722 1.002011 GGGTCACTTGCCTCCTTCC 60.002 63.158 0.00 0.00 0.00 3.46
714 736 2.575461 CTTCGGGTACACGGGGTC 59.425 66.667 19.08 0.00 0.00 4.46
760 784 6.183360 GCATTTACAAATTCTTTGCTCGGAAG 60.183 38.462 0.00 0.00 44.39 3.46
844 874 3.055819 CCATGGTGGCTCGTTATATAGCT 60.056 47.826 2.57 0.00 38.80 3.32
986 1654 0.038892 CTTCATGCTGCCGTTGCTTT 60.039 50.000 0.00 0.00 38.71 3.51
1186 1857 4.717629 CTCCTCGCCGACGCACAA 62.718 66.667 0.00 0.00 39.84 3.33
1487 2194 2.353406 GCATTTTGCTCTGCTGGTTCAT 60.353 45.455 0.00 0.00 40.96 2.57
1637 2370 2.105766 GAAATTGCAGCCCTGATTCCT 58.894 47.619 0.00 0.00 0.00 3.36
1643 2376 3.999046 AGAAAAAGAAATTGCAGCCCTG 58.001 40.909 0.00 0.00 0.00 4.45
1670 2403 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1672 2405 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1673 2406 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1674 2407 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1675 2408 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1676 2409 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1677 2410 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1678 2411 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1679 2412 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1680 2413 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1681 2414 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1682 2415 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1683 2416 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1684 2417 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1685 2418 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1686 2419 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1687 2420 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1688 2421 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1689 2422 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1803 2544 4.552767 GCGGCTTACATGATGTGTTATCAC 60.553 45.833 8.61 0.00 42.29 3.06
1895 2645 3.691118 GGAAGTGCATTGCATTCTACAGA 59.309 43.478 15.49 0.00 41.91 3.41
1896 2646 3.441222 TGGAAGTGCATTGCATTCTACAG 59.559 43.478 15.49 0.00 41.91 2.74
1919 2672 4.247380 GAGCTGGCTGGGGATCCG 62.247 72.222 5.45 0.00 35.24 4.18
1925 2678 2.185310 AACCGTTAGAGCTGGCTGGG 62.185 60.000 0.00 0.00 0.00 4.45
2000 2762 4.546829 TGCCCCAAGTAGTTTAGTAGTG 57.453 45.455 0.00 0.00 0.00 2.74
2060 2833 3.707793 GGCTATCTACTGAACCTGAACG 58.292 50.000 0.00 0.00 0.00 3.95
2097 2870 5.303078 GGACTGATGGACACACAGACTATAT 59.697 44.000 12.82 0.00 35.85 0.86
2098 2871 4.645136 GGACTGATGGACACACAGACTATA 59.355 45.833 12.82 0.00 35.85 1.31
2099 2872 3.449018 GGACTGATGGACACACAGACTAT 59.551 47.826 12.82 0.00 35.85 2.12
2100 2873 2.826128 GGACTGATGGACACACAGACTA 59.174 50.000 12.82 0.00 35.85 2.59
2101 2874 1.620819 GGACTGATGGACACACAGACT 59.379 52.381 12.82 0.00 35.85 3.24
2102 2875 1.344438 TGGACTGATGGACACACAGAC 59.656 52.381 12.82 8.12 35.85 3.51
2103 2876 1.715785 TGGACTGATGGACACACAGA 58.284 50.000 12.82 0.00 35.85 3.41
2104 2877 2.353323 CATGGACTGATGGACACACAG 58.647 52.381 0.00 0.00 37.62 3.66
2105 2878 1.003464 CCATGGACTGATGGACACACA 59.997 52.381 5.56 0.00 45.24 3.72
2106 2879 1.278985 TCCATGGACTGATGGACACAC 59.721 52.381 11.44 0.00 45.85 3.82
2127 2900 8.980481 TTAACTCTCTTCAAAGTTCTGGAAAT 57.020 30.769 0.00 0.00 37.02 2.17
2135 2908 5.049405 CACGCCATTAACTCTCTTCAAAGTT 60.049 40.000 0.00 0.00 39.07 2.66
2146 2919 5.581085 AGTTATCTGTTCACGCCATTAACTC 59.419 40.000 0.00 0.00 0.00 3.01
2151 2925 2.420022 GCAGTTATCTGTTCACGCCATT 59.580 45.455 2.85 0.00 43.05 3.16
2157 2931 3.182967 CTCGAGGCAGTTATCTGTTCAC 58.817 50.000 3.91 0.00 43.05 3.18
2163 2937 0.397816 AGGGCTCGAGGCAGTTATCT 60.398 55.000 36.07 21.70 44.01 1.98
2190 2964 1.330213 CAATTGGCACATACGCATCGA 59.670 47.619 0.00 0.00 39.30 3.59
2191 2965 1.745566 CAATTGGCACATACGCATCG 58.254 50.000 0.00 0.00 39.30 3.84
2193 2967 3.646650 GCAATTGGCACATACGCAT 57.353 47.368 7.72 0.00 43.97 4.73
2208 2982 0.756294 TCTCGTCCCTTTCACTGCAA 59.244 50.000 0.00 0.00 0.00 4.08
2238 3015 2.494471 CTGATTTCTCCAATGCCTGCAA 59.506 45.455 0.00 0.00 0.00 4.08
2245 3022 6.564709 TTGTTCTGTCTGATTTCTCCAATG 57.435 37.500 0.00 0.00 0.00 2.82
2258 3035 5.128919 AGAAGAAACAGCATTGTTCTGTCT 58.871 37.500 8.02 0.00 46.54 3.41
2326 3108 2.353269 AGAATGTGACGACTAGCTCTCG 59.647 50.000 11.25 11.25 37.17 4.04
2331 3113 6.946229 TTTTAGAAGAATGTGACGACTAGC 57.054 37.500 0.00 0.00 0.00 3.42
2355 3137 4.074970 ACTTTTCTCGTGATGCCATCTTT 58.925 39.130 6.21 0.00 0.00 2.52
2358 3140 4.870426 TCTAACTTTTCTCGTGATGCCATC 59.130 41.667 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.