Multiple sequence alignment - TraesCS7A01G467700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G467700 chr7A 100.000 4507 0 0 1 4507 663955218 663959724 0.000000e+00 8323.0
1 TraesCS7A01G467700 chr7B 94.012 2121 70 23 857 2977 633319947 633317884 0.000000e+00 3160.0
2 TraesCS7A01G467700 chr7B 92.612 1516 61 20 3010 4504 633317885 633316400 0.000000e+00 2132.0
3 TraesCS7A01G467700 chr7B 77.305 846 104 35 93 868 633323765 633322938 6.970000e-113 418.0
4 TraesCS7A01G467700 chr7B 78.112 233 32 13 423 649 703714591 703714372 3.660000e-26 130.0
5 TraesCS7A01G467700 chr7B 81.752 137 18 5 423 557 705259909 705260040 1.710000e-19 108.0
6 TraesCS7A01G467700 chr4D 76.471 306 47 18 423 715 507756747 507757040 4.700000e-30 143.0
7 TraesCS7A01G467700 chr5B 75.884 311 55 7 423 715 9342861 9343169 1.690000e-29 141.0
8 TraesCS7A01G467700 chr5B 81.046 153 16 10 509 649 587059691 587059842 4.770000e-20 110.0
9 TraesCS7A01G467700 chr5B 74.603 252 40 12 423 655 399775482 399775236 6.210000e-14 89.8
10 TraesCS7A01G467700 chr2A 76.038 313 43 18 423 716 718727617 718727916 2.830000e-27 134.0
11 TraesCS7A01G467700 chr6A 77.731 238 31 14 423 649 532896243 532896017 4.730000e-25 126.0
12 TraesCS7A01G467700 chr2D 76.157 281 41 19 423 680 7139853 7140130 1.700000e-24 124.0
13 TraesCS7A01G467700 chr5D 77.434 226 35 7 423 633 489803873 489804097 2.200000e-23 121.0
14 TraesCS7A01G467700 chr5D 80.292 137 21 4 583 714 421384026 421384161 1.030000e-16 99.0
15 TraesCS7A01G467700 chr4A 75.244 307 47 17 423 715 11649824 11649533 7.920000e-23 119.0
16 TraesCS7A01G467700 chr4A 76.190 231 33 15 505 715 121152316 121152544 7.980000e-18 102.0
17 TraesCS7A01G467700 chr1D 77.434 226 33 8 423 633 420689524 420689746 7.920000e-23 119.0
18 TraesCS7A01G467700 chr1B 75.410 305 38 25 433 715 544453246 544453535 3.680000e-21 113.0
19 TraesCS7A01G467700 chr6D 75.536 233 42 9 435 653 42548679 42548448 2.870000e-17 100.0
20 TraesCS7A01G467700 chr2B 75.758 231 39 9 425 640 728630499 728630727 2.870000e-17 100.0
21 TraesCS7A01G467700 chr2B 78.286 175 21 13 423 586 138963643 138963475 3.710000e-16 97.1
22 TraesCS7A01G467700 chr6B 78.947 133 26 2 1070 1201 599770488 599770357 6.210000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G467700 chr7A 663955218 663959724 4506 False 8323.000000 8323 100.000000 1 4507 1 chr7A.!!$F1 4506
1 TraesCS7A01G467700 chr7B 633316400 633323765 7365 True 1903.333333 3160 87.976333 93 4504 3 chr7B.!!$R2 4411

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 167 0.108992 TACCTCCATCGACAACGTGC 60.109 55.0 0.00 0.0 40.69 5.34 F
1446 4515 0.179034 AGGCTGATCTCGATTTGGCC 60.179 55.0 0.00 0.0 38.50 5.36 F
1659 4728 0.243907 ACACCACCGATCGTCTTCAG 59.756 55.0 15.09 0.0 0.00 3.02 F
2416 5485 0.112412 AGTTCCCAAATTGACGCCCT 59.888 50.0 0.00 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1650 4719 0.244994 GGAGCAGCTTCTGAAGACGA 59.755 55.0 21.06 0.0 32.44 4.20 R
2371 5440 0.461961 ACTGACGGCCTTAGAGATGC 59.538 55.0 0.00 0.0 0.00 3.91 R
3239 6309 1.267121 GCACAAGTCTGGTCCCTCTA 58.733 55.0 0.00 0.0 0.00 2.43 R
4025 7122 0.040204 AAGGCATGGAGGGAGGTTTG 59.960 55.0 0.00 0.0 0.00 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.797693 TTTTGTTGTACGATTTCGAGCA 57.202 36.364 7.01 2.42 43.02 4.26
23 24 5.351233 TTTTGTTGTACGATTTCGAGCAT 57.649 34.783 7.01 0.00 43.02 3.79
24 25 6.469139 TTTTGTTGTACGATTTCGAGCATA 57.531 33.333 7.01 0.00 43.02 3.14
25 26 5.696260 TTGTTGTACGATTTCGAGCATAG 57.304 39.130 7.01 0.00 43.02 2.23
26 27 4.740268 TGTTGTACGATTTCGAGCATAGT 58.260 39.130 7.01 0.00 43.02 2.12
27 28 4.561213 TGTTGTACGATTTCGAGCATAGTG 59.439 41.667 7.01 0.00 43.02 2.74
28 29 4.625972 TGTACGATTTCGAGCATAGTGA 57.374 40.909 7.01 0.00 43.02 3.41
29 30 4.348656 TGTACGATTTCGAGCATAGTGAC 58.651 43.478 7.01 0.00 43.02 3.67
30 31 3.503827 ACGATTTCGAGCATAGTGACA 57.496 42.857 7.01 0.00 43.02 3.58
31 32 4.046938 ACGATTTCGAGCATAGTGACAT 57.953 40.909 7.01 0.00 43.02 3.06
32 33 4.433615 ACGATTTCGAGCATAGTGACATT 58.566 39.130 7.01 0.00 43.02 2.71
33 34 4.268644 ACGATTTCGAGCATAGTGACATTG 59.731 41.667 7.01 0.00 43.02 2.82
34 35 4.504097 CGATTTCGAGCATAGTGACATTGA 59.496 41.667 0.00 0.00 43.02 2.57
35 36 5.176406 CGATTTCGAGCATAGTGACATTGAT 59.824 40.000 0.00 0.00 43.02 2.57
36 37 5.723492 TTTCGAGCATAGTGACATTGATG 57.277 39.130 0.00 0.00 0.00 3.07
37 38 3.126073 TCGAGCATAGTGACATTGATGC 58.874 45.455 9.84 9.84 44.05 3.91
41 42 4.469625 GCATAGTGACATTGATGCTGAG 57.530 45.455 10.35 0.00 41.19 3.35
42 43 4.124970 GCATAGTGACATTGATGCTGAGA 58.875 43.478 10.35 0.00 41.19 3.27
43 44 4.211584 GCATAGTGACATTGATGCTGAGAG 59.788 45.833 10.35 0.00 41.19 3.20
44 45 3.263489 AGTGACATTGATGCTGAGAGG 57.737 47.619 0.00 0.00 0.00 3.69
45 46 1.669779 GTGACATTGATGCTGAGAGGC 59.330 52.381 0.00 0.00 0.00 4.70
46 47 1.279846 TGACATTGATGCTGAGAGGCA 59.720 47.619 0.00 0.00 46.63 4.75
47 48 1.669779 GACATTGATGCTGAGAGGCAC 59.330 52.381 0.00 0.00 45.36 5.01
48 49 1.022735 CATTGATGCTGAGAGGCACC 58.977 55.000 0.00 0.00 45.36 5.01
49 50 0.917533 ATTGATGCTGAGAGGCACCT 59.082 50.000 0.00 0.00 45.36 4.00
50 51 0.251354 TTGATGCTGAGAGGCACCTC 59.749 55.000 8.74 8.74 45.36 3.85
51 52 0.906282 TGATGCTGAGAGGCACCTCA 60.906 55.000 18.67 8.88 45.36 3.86
52 53 0.461693 GATGCTGAGAGGCACCTCAC 60.462 60.000 18.67 12.86 45.36 3.51
53 54 1.908340 ATGCTGAGAGGCACCTCACC 61.908 60.000 18.67 10.21 45.36 4.02
54 55 2.985456 CTGAGAGGCACCTCACCC 59.015 66.667 18.67 7.91 44.99 4.61
55 56 1.915266 CTGAGAGGCACCTCACCCA 60.915 63.158 18.67 11.65 44.99 4.51
56 57 1.229625 TGAGAGGCACCTCACCCAT 60.230 57.895 18.67 0.00 44.99 4.00
57 58 1.222936 GAGAGGCACCTCACCCATG 59.777 63.158 18.67 0.00 44.99 3.66
58 59 2.262774 GAGAGGCACCTCACCCATGG 62.263 65.000 18.67 4.14 44.99 3.66
59 60 3.341629 AGGCACCTCACCCATGGG 61.342 66.667 30.23 30.23 42.03 4.00
61 62 4.052518 GCACCTCACCCATGGGCT 62.053 66.667 31.73 15.29 39.32 5.19
62 63 2.765969 CACCTCACCCATGGGCTT 59.234 61.111 31.73 9.80 39.32 4.35
63 64 1.379044 CACCTCACCCATGGGCTTC 60.379 63.158 31.73 0.00 39.32 3.86
64 65 2.276740 CCTCACCCATGGGCTTCC 59.723 66.667 31.73 0.00 39.32 3.46
65 66 2.124570 CTCACCCATGGGCTTCCG 60.125 66.667 31.73 14.06 39.32 4.30
66 67 2.933287 TCACCCATGGGCTTCCGT 60.933 61.111 31.73 7.16 39.32 4.69
67 68 2.035626 CACCCATGGGCTTCCGTT 59.964 61.111 31.73 6.30 39.32 4.44
68 69 2.046285 CACCCATGGGCTTCCGTTC 61.046 63.158 31.73 0.00 39.32 3.95
69 70 2.231380 ACCCATGGGCTTCCGTTCT 61.231 57.895 31.73 4.58 39.32 3.01
70 71 1.452108 CCCATGGGCTTCCGTTCTC 60.452 63.158 20.41 0.00 0.00 2.87
71 72 1.299648 CCATGGGCTTCCGTTCTCA 59.700 57.895 2.85 0.00 0.00 3.27
72 73 0.322456 CCATGGGCTTCCGTTCTCAA 60.322 55.000 2.85 0.00 0.00 3.02
73 74 0.804989 CATGGGCTTCCGTTCTCAAC 59.195 55.000 0.00 0.00 0.00 3.18
74 75 0.322546 ATGGGCTTCCGTTCTCAACC 60.323 55.000 0.00 0.00 0.00 3.77
75 76 1.072505 GGGCTTCCGTTCTCAACCA 59.927 57.895 0.00 0.00 0.00 3.67
76 77 0.536460 GGGCTTCCGTTCTCAACCAA 60.536 55.000 0.00 0.00 0.00 3.67
77 78 0.875059 GGCTTCCGTTCTCAACCAAG 59.125 55.000 0.00 0.00 0.00 3.61
78 79 1.542547 GGCTTCCGTTCTCAACCAAGA 60.543 52.381 0.00 0.00 0.00 3.02
79 80 2.218603 GCTTCCGTTCTCAACCAAGAA 58.781 47.619 0.00 0.00 32.92 2.52
80 81 2.814336 GCTTCCGTTCTCAACCAAGAAT 59.186 45.455 0.00 0.00 37.59 2.40
81 82 3.365364 GCTTCCGTTCTCAACCAAGAATG 60.365 47.826 0.00 0.00 40.48 2.67
82 83 2.151202 TCCGTTCTCAACCAAGAATGC 58.849 47.619 1.22 0.00 39.79 3.56
83 84 1.200020 CCGTTCTCAACCAAGAATGCC 59.800 52.381 1.22 0.00 39.79 4.40
84 85 2.154462 CGTTCTCAACCAAGAATGCCT 58.846 47.619 0.00 0.00 37.59 4.75
85 86 3.334691 CGTTCTCAACCAAGAATGCCTA 58.665 45.455 0.00 0.00 37.59 3.93
86 87 3.941483 CGTTCTCAACCAAGAATGCCTAT 59.059 43.478 0.00 0.00 37.59 2.57
87 88 4.034510 CGTTCTCAACCAAGAATGCCTATC 59.965 45.833 0.00 0.00 37.59 2.08
88 89 3.797039 TCTCAACCAAGAATGCCTATCG 58.203 45.455 0.00 0.00 0.00 2.92
89 90 2.288666 TCAACCAAGAATGCCTATCGC 58.711 47.619 0.00 0.00 38.31 4.58
90 91 2.092968 TCAACCAAGAATGCCTATCGCT 60.093 45.455 0.00 0.00 38.78 4.93
91 92 2.684881 CAACCAAGAATGCCTATCGCTT 59.315 45.455 0.00 0.00 38.78 4.68
92 93 2.292267 ACCAAGAATGCCTATCGCTTG 58.708 47.619 0.00 0.00 38.78 4.01
93 94 2.292267 CCAAGAATGCCTATCGCTTGT 58.708 47.619 0.00 0.00 38.78 3.16
94 95 2.289002 CCAAGAATGCCTATCGCTTGTC 59.711 50.000 0.00 0.00 38.78 3.18
95 96 2.246719 AGAATGCCTATCGCTTGTCC 57.753 50.000 0.00 0.00 38.78 4.02
96 97 1.202698 AGAATGCCTATCGCTTGTCCC 60.203 52.381 0.00 0.00 38.78 4.46
97 98 0.532862 AATGCCTATCGCTTGTCCCG 60.533 55.000 0.00 0.00 38.78 5.14
98 99 1.686325 ATGCCTATCGCTTGTCCCGT 61.686 55.000 0.00 0.00 38.78 5.28
107 108 1.599047 CTTGTCCCGTGCCTCTCAT 59.401 57.895 0.00 0.00 0.00 2.90
114 115 0.321564 CCGTGCCTCTCATGTTTGGA 60.322 55.000 0.00 0.00 0.00 3.53
116 117 0.798776 GTGCCTCTCATGTTTGGACG 59.201 55.000 0.00 0.00 0.00 4.79
117 118 0.955428 TGCCTCTCATGTTTGGACGC 60.955 55.000 0.00 0.00 0.00 5.19
118 119 1.970917 GCCTCTCATGTTTGGACGCG 61.971 60.000 3.53 3.53 0.00 6.01
119 120 0.670546 CCTCTCATGTTTGGACGCGT 60.671 55.000 13.85 13.85 0.00 6.01
121 122 0.865111 TCTCATGTTTGGACGCGTTG 59.135 50.000 15.53 5.74 0.00 4.10
122 123 0.110238 CTCATGTTTGGACGCGTTGG 60.110 55.000 15.53 0.00 0.00 3.77
123 124 1.081509 CATGTTTGGACGCGTTGGG 60.082 57.895 15.53 0.00 0.00 4.12
124 125 2.914908 ATGTTTGGACGCGTTGGGC 61.915 57.895 15.53 0.00 38.69 5.36
126 127 4.572571 TTTGGACGCGTTGGGCCT 62.573 61.111 15.53 0.00 38.94 5.19
134 138 3.322466 CGTTGGGCCTCCACTCCT 61.322 66.667 4.53 0.00 43.94 3.69
146 150 1.033574 CCACTCCTACCTCCATCGAC 58.966 60.000 0.00 0.00 0.00 4.20
149 153 2.100989 ACTCCTACCTCCATCGACAAC 58.899 52.381 0.00 0.00 0.00 3.32
153 167 0.108992 TACCTCCATCGACAACGTGC 60.109 55.000 0.00 0.00 40.69 5.34
160 174 4.003788 CGACAACGTGCCCTCCCT 62.004 66.667 0.00 0.00 34.56 4.20
161 175 2.358737 GACAACGTGCCCTCCCTG 60.359 66.667 0.00 0.00 0.00 4.45
176 190 2.328099 CCTGCTTGGCCTCGACAAC 61.328 63.158 3.32 0.00 0.00 3.32
185 199 0.452784 GCCTCGACAACGACATTTGC 60.453 55.000 0.00 0.00 43.81 3.68
188 202 1.209127 CGACAACGACATTTGCCCC 59.791 57.895 0.00 0.00 42.66 5.80
209 223 1.756430 GGTTGCCCTCTTCATCCTTC 58.244 55.000 0.00 0.00 0.00 3.46
221 235 3.281727 TCATCCTTCGGAAGATTTGGG 57.718 47.619 19.06 2.27 41.60 4.12
225 239 2.642807 TCCTTCGGAAGATTTGGGACTT 59.357 45.455 19.06 0.00 41.60 3.01
233 247 4.395231 GGAAGATTTGGGACTTTAGGAACG 59.605 45.833 0.00 0.00 0.00 3.95
238 252 3.149005 TGGGACTTTAGGAACGCAAAT 57.851 42.857 0.00 0.00 0.00 2.32
244 258 5.278315 GGACTTTAGGAACGCAAATGTCTTT 60.278 40.000 0.00 0.00 0.00 2.52
246 260 5.298276 ACTTTAGGAACGCAAATGTCTTTCA 59.702 36.000 0.00 0.00 0.00 2.69
249 263 5.551760 AGGAACGCAAATGTCTTTCATAG 57.448 39.130 0.00 0.00 35.48 2.23
279 293 5.807344 TCACTCGTCTGATGTAACTATTCG 58.193 41.667 0.00 0.00 0.00 3.34
328 342 9.593134 CTTTGGATATCTAGATTTAGGGATTCG 57.407 37.037 11.25 0.00 0.00 3.34
332 346 9.191479 GGATATCTAGATTTAGGGATTCGAAGA 57.809 37.037 11.25 0.00 0.00 2.87
342 356 4.327680 AGGGATTCGAAGAAGAAGGTTTG 58.672 43.478 3.35 0.00 45.90 2.93
347 361 5.673337 TTCGAAGAAGAAGGTTTGACATG 57.327 39.130 0.00 0.00 45.90 3.21
354 368 4.104383 AGAAGGTTTGACATGTCATGGT 57.896 40.909 28.32 12.65 39.64 3.55
379 394 1.107538 TACCTTGCCTCGCGCTCTAT 61.108 55.000 5.56 0.00 38.78 1.98
381 396 1.066422 CTTGCCTCGCGCTCTATCA 59.934 57.895 5.56 0.00 38.78 2.15
384 399 1.006805 GCCTCGCGCTCTATCACAT 60.007 57.895 5.56 0.00 0.00 3.21
386 401 0.595588 CCTCGCGCTCTATCACATCT 59.404 55.000 5.56 0.00 0.00 2.90
393 408 4.225984 GCGCTCTATCACATCTCTGTAAG 58.774 47.826 0.00 0.00 33.14 2.34
400 415 2.002586 CACATCTCTGTAAGTTGGCCG 58.997 52.381 0.00 0.00 33.14 6.13
401 416 1.623811 ACATCTCTGTAAGTTGGCCGT 59.376 47.619 0.00 0.00 32.49 5.68
404 419 3.202829 TCTCTGTAAGTTGGCCGTTTT 57.797 42.857 0.00 0.00 33.76 2.43
420 435 3.181474 CCGTTTTTGGCCCTTTTGAGTAA 60.181 43.478 0.00 0.00 0.00 2.24
429 469 4.525100 GGCCCTTTTGAGTAATAACCAACA 59.475 41.667 0.00 0.00 0.00 3.33
447 487 4.380843 AACATGTGGTTGGATGGTTAGA 57.619 40.909 0.00 0.00 38.60 2.10
451 491 2.983192 TGTGGTTGGATGGTTAGAAGGA 59.017 45.455 0.00 0.00 0.00 3.36
452 492 3.009033 TGTGGTTGGATGGTTAGAAGGAG 59.991 47.826 0.00 0.00 0.00 3.69
454 494 3.519510 TGGTTGGATGGTTAGAAGGAGAG 59.480 47.826 0.00 0.00 0.00 3.20
455 495 3.519913 GGTTGGATGGTTAGAAGGAGAGT 59.480 47.826 0.00 0.00 0.00 3.24
456 496 4.715297 GGTTGGATGGTTAGAAGGAGAGTA 59.285 45.833 0.00 0.00 0.00 2.59
457 497 5.163395 GGTTGGATGGTTAGAAGGAGAGTAG 60.163 48.000 0.00 0.00 0.00 2.57
458 498 5.208294 TGGATGGTTAGAAGGAGAGTAGT 57.792 43.478 0.00 0.00 0.00 2.73
459 499 6.337185 TGGATGGTTAGAAGGAGAGTAGTA 57.663 41.667 0.00 0.00 0.00 1.82
460 500 6.923670 TGGATGGTTAGAAGGAGAGTAGTAT 58.076 40.000 0.00 0.00 0.00 2.12
461 501 7.005296 TGGATGGTTAGAAGGAGAGTAGTATC 58.995 42.308 0.00 0.00 0.00 2.24
469 509 2.866454 AGGAGAGTAGTATCCCCAACCT 59.134 50.000 7.64 0.00 34.18 3.50
471 511 4.140971 AGGAGAGTAGTATCCCCAACCTAC 60.141 50.000 7.64 0.00 34.18 3.18
472 512 4.151121 GAGAGTAGTATCCCCAACCTACC 58.849 52.174 0.00 0.00 32.12 3.18
482 522 1.271926 CCCAACCTACCAGGGTTCAAG 60.272 57.143 0.00 0.00 46.58 3.02
484 524 2.552373 CCAACCTACCAGGGTTCAAGTC 60.552 54.545 0.00 0.00 46.58 3.01
488 528 3.178865 CCTACCAGGGTTCAAGTCCTAA 58.821 50.000 0.00 0.00 0.00 2.69
500 540 3.525800 AAGTCCTAAACTTGGCACCAT 57.474 42.857 0.00 0.00 46.61 3.55
501 541 3.073274 AGTCCTAAACTTGGCACCATC 57.927 47.619 0.00 0.00 33.03 3.51
503 543 1.626321 TCCTAAACTTGGCACCATCGA 59.374 47.619 0.00 0.00 0.00 3.59
525 566 5.853282 CGATCGCATTTCCTGGATTTATTTC 59.147 40.000 0.26 0.00 0.00 2.17
529 570 6.038603 TCGCATTTCCTGGATTTATTTCAGAG 59.961 38.462 0.00 0.00 0.00 3.35
530 571 6.183360 CGCATTTCCTGGATTTATTTCAGAGT 60.183 38.462 0.00 0.00 0.00 3.24
533 579 7.687941 TTTCCTGGATTTATTTCAGAGTGAC 57.312 36.000 0.00 0.00 0.00 3.67
599 654 5.352569 AGGCGACTTTGTCAATCTAAAGATG 59.647 40.000 0.00 0.00 37.44 2.90
605 660 7.533426 ACTTTGTCAATCTAAAGATGATGTGC 58.467 34.615 0.00 0.00 37.35 4.57
607 662 5.499313 TGTCAATCTAAAGATGATGTGCCA 58.501 37.500 0.00 0.00 34.49 4.92
613 668 1.747709 AAGATGATGTGCCAGCTCAC 58.252 50.000 0.00 0.00 30.67 3.51
615 670 1.281287 AGATGATGTGCCAGCTCACTT 59.719 47.619 7.05 0.96 37.81 3.16
619 674 1.736681 GATGTGCCAGCTCACTTTCTC 59.263 52.381 7.05 0.00 37.81 2.87
629 684 0.603569 TCACTTTCTCGGAGGTGCTC 59.396 55.000 4.96 0.00 0.00 4.26
633 688 2.832129 ACTTTCTCGGAGGTGCTCATAA 59.168 45.455 4.96 0.00 31.08 1.90
635 690 1.403814 TCTCGGAGGTGCTCATAAGG 58.596 55.000 4.96 0.00 31.08 2.69
637 692 0.325296 TCGGAGGTGCTCATAAGGGT 60.325 55.000 0.00 0.00 31.08 4.34
644 699 0.837272 TGCTCATAAGGGTAGGGTGC 59.163 55.000 0.00 0.00 0.00 5.01
649 704 1.619807 ATAAGGGTAGGGTGCGCGTT 61.620 55.000 8.43 0.00 0.00 4.84
651 706 4.382320 GGGTAGGGTGCGCGTTCA 62.382 66.667 8.43 0.00 0.00 3.18
655 710 0.739813 GTAGGGTGCGCGTTCATTCT 60.740 55.000 8.43 2.81 0.00 2.40
657 712 0.889186 AGGGTGCGCGTTCATTCTTT 60.889 50.000 8.43 0.00 0.00 2.52
661 716 1.730064 GTGCGCGTTCATTCTTTAGGA 59.270 47.619 8.43 0.00 0.00 2.94
665 720 3.544244 GCGCGTTCATTCTTTAGGATGAC 60.544 47.826 8.43 0.00 0.00 3.06
689 744 8.992835 ACTATATGTGCATATGTATGAGTGTG 57.007 34.615 6.16 0.00 35.71 3.82
692 747 5.083533 TGTGCATATGTATGAGTGTGTGA 57.916 39.130 4.29 0.00 35.75 3.58
695 750 5.582269 GTGCATATGTATGAGTGTGTGAGTT 59.418 40.000 4.29 0.00 35.75 3.01
698 753 6.457392 GCATATGTATGAGTGTGTGAGTTTGG 60.457 42.308 4.29 0.00 35.75 3.28
700 755 4.377021 TGTATGAGTGTGTGAGTTTGGAC 58.623 43.478 0.00 0.00 0.00 4.02
703 758 2.499693 TGAGTGTGTGAGTTTGGACTGA 59.500 45.455 0.00 0.00 35.88 3.41
707 762 4.161565 AGTGTGTGAGTTTGGACTGAGTTA 59.838 41.667 0.00 0.00 35.88 2.24
708 763 4.873827 GTGTGTGAGTTTGGACTGAGTTAA 59.126 41.667 0.00 0.00 35.88 2.01
734 789 4.500826 GAGGACCCTCCCCTCCCC 62.501 77.778 4.72 0.00 43.37 4.81
737 792 4.825679 GACCCTCCCCTCCCCCAG 62.826 77.778 0.00 0.00 0.00 4.45
746 801 2.723305 CCTCCCCCAGGGTAATTGT 58.277 57.895 4.22 0.00 44.74 2.71
747 802 1.007607 CCTCCCCCAGGGTAATTGTT 58.992 55.000 4.22 0.00 44.74 2.83
748 803 1.063942 CCTCCCCCAGGGTAATTGTTC 60.064 57.143 4.22 0.00 44.74 3.18
751 807 2.451273 TCCCCCAGGGTAATTGTTCAAA 59.549 45.455 4.22 0.00 44.74 2.69
794 856 4.693566 TCAAATAGGCCGTAAAACAGTGAG 59.306 41.667 0.00 0.00 0.00 3.51
795 857 2.754946 TAGGCCGTAAAACAGTGAGG 57.245 50.000 0.00 0.00 0.00 3.86
796 858 0.605589 AGGCCGTAAAACAGTGAGGC 60.606 55.000 0.00 1.71 43.47 4.70
817 884 2.173356 CCAGCCCAATACTGAAGATCCA 59.827 50.000 0.00 0.00 37.32 3.41
848 915 2.203070 CAGGCCCGCATAGTCCAC 60.203 66.667 0.00 0.00 0.00 4.02
898 3967 3.090037 AGCGGTATAGCGTTCATATCCT 58.910 45.455 23.81 8.35 43.00 3.24
899 3968 3.128938 AGCGGTATAGCGTTCATATCCTC 59.871 47.826 23.81 4.89 43.00 3.71
900 3969 3.734293 GCGGTATAGCGTTCATATCCTCC 60.734 52.174 23.81 0.81 0.00 4.30
917 3986 2.504585 CCTCCTAACAAACCCTAGACCC 59.495 54.545 0.00 0.00 0.00 4.46
934 4003 3.680786 CACACCCTCTCACGGCGA 61.681 66.667 16.62 0.00 0.00 5.54
935 4004 2.680352 ACACCCTCTCACGGCGAT 60.680 61.111 16.62 0.00 0.00 4.58
936 4005 2.105128 CACCCTCTCACGGCGATC 59.895 66.667 16.62 0.00 0.00 3.69
937 4006 3.148279 ACCCTCTCACGGCGATCC 61.148 66.667 16.62 0.00 0.00 3.36
938 4007 3.917760 CCCTCTCACGGCGATCCC 61.918 72.222 16.62 0.00 0.00 3.85
1013 4082 1.890894 CTCCGATGGACGACAAGGT 59.109 57.895 0.00 0.00 45.77 3.50
1111 4180 2.050350 CGGCTACCGGTGAAGGAGA 61.050 63.158 19.93 0.00 44.15 3.71
1236 4305 0.681243 GCCCCACCAAGAAGATGTCC 60.681 60.000 0.00 0.00 0.00 4.02
1254 4323 3.580458 TGTCCAAGAAGAGGAAGAGAAGG 59.420 47.826 0.00 0.00 36.80 3.46
1263 4332 1.754226 AGGAAGAGAAGGTCGCAGATC 59.246 52.381 0.00 0.00 40.67 2.75
1273 4342 2.279120 CGCAGATCGAGGCAGACC 60.279 66.667 7.20 0.00 41.67 3.85
1290 4359 1.153667 CCTGCTCGAAGACTCCAGC 60.154 63.158 0.00 0.00 0.00 4.85
1293 4362 1.515304 GCTCGAAGACTCCAGCGAC 60.515 63.158 0.00 0.00 0.00 5.19
1294 4363 1.226156 CTCGAAGACTCCAGCGACG 60.226 63.158 0.00 0.00 0.00 5.12
1295 4364 2.202492 CGAAGACTCCAGCGACGG 60.202 66.667 0.00 0.00 0.00 4.79
1296 4365 2.507324 GAAGACTCCAGCGACGGC 60.507 66.667 0.00 0.00 40.37 5.68
1297 4366 4.421479 AAGACTCCAGCGACGGCG 62.421 66.667 6.12 6.12 46.35 6.46
1311 4380 3.255379 GGCGACGGCGATCTGTTC 61.255 66.667 18.90 0.00 41.24 3.18
1323 4392 1.861575 GATCTGTTCGAAGATTCCGGC 59.138 52.381 0.00 0.00 37.03 6.13
1324 4393 0.457853 TCTGTTCGAAGATTCCGGCG 60.458 55.000 0.00 0.00 35.04 6.46
1325 4394 0.457853 CTGTTCGAAGATTCCGGCGA 60.458 55.000 9.30 0.00 35.04 5.54
1428 4497 4.408821 TACCTGCGGCTGGCCAAG 62.409 66.667 23.83 0.00 42.61 3.61
1446 4515 0.179034 AGGCTGATCTCGATTTGGCC 60.179 55.000 0.00 0.00 38.50 5.36
1476 4545 2.579201 CAGCTCGACCGTGGGATT 59.421 61.111 0.00 0.00 0.00 3.01
1518 4587 1.143073 CCCCTTACCACCAAGATAGCC 59.857 57.143 0.00 0.00 0.00 3.93
1521 4590 1.143073 CTTACCACCAAGATAGCCCCC 59.857 57.143 0.00 0.00 0.00 5.40
1601 4670 1.586154 CCTTCCACATTCACGGCCAC 61.586 60.000 2.24 0.00 0.00 5.01
1633 4702 0.461961 GTCATCCCCTCCGACTTCAG 59.538 60.000 0.00 0.00 0.00 3.02
1650 4719 2.217038 AGCACCAGACACCACCGAT 61.217 57.895 0.00 0.00 0.00 4.18
1659 4728 0.243907 ACACCACCGATCGTCTTCAG 59.756 55.000 15.09 0.00 0.00 3.02
1663 4732 1.272781 CACCGATCGTCTTCAGAAGC 58.727 55.000 15.09 0.26 0.00 3.86
1685 4754 0.253327 CTCCCCACTTTACCTCAGCC 59.747 60.000 0.00 0.00 0.00 4.85
1800 4869 3.181329 TCCCCTTGAACTAAGAGCATCA 58.819 45.455 0.00 0.00 38.76 3.07
1801 4870 3.587061 TCCCCTTGAACTAAGAGCATCAA 59.413 43.478 0.00 0.00 38.76 2.57
1803 4872 4.578105 CCCCTTGAACTAAGAGCATCAATC 59.422 45.833 0.00 0.00 38.76 2.67
1855 4924 1.277842 TCTACCTCGAGGCAATTGCAA 59.722 47.619 31.56 12.43 44.36 4.08
1920 4989 2.079925 CTCAAGGCTGGTTACTGCTTC 58.920 52.381 0.00 0.00 40.90 3.86
2085 5154 2.147958 GTGACATTTGTTCGTGCCCTA 58.852 47.619 0.00 0.00 0.00 3.53
2133 5202 5.581085 CGCCATGTTATATCTACTTAAGGCC 59.419 44.000 7.53 0.00 33.91 5.19
2158 5227 1.613437 CCAACCTTCGTGAAGCCATTT 59.387 47.619 4.05 0.00 37.11 2.32
2163 5232 3.383185 ACCTTCGTGAAGCCATTTCAAAA 59.617 39.130 4.05 0.00 46.85 2.44
2176 5245 5.159209 CCATTTCAAAACTGCAGCTAGAAG 58.841 41.667 15.27 0.00 0.00 2.85
2225 5294 1.153647 CGTACAAGATGGCCGCTCA 60.154 57.895 0.00 0.00 0.00 4.26
2241 5310 2.540265 CTCAGGTAGCATGTCATCCC 57.460 55.000 0.00 0.00 0.00 3.85
2287 5356 1.236616 CCTGTCAACTGCGCCATCAA 61.237 55.000 4.18 0.00 0.00 2.57
2298 5367 1.233019 CGCCATCAATCATGTCCTCC 58.767 55.000 0.00 0.00 0.00 4.30
2301 5370 2.224281 GCCATCAATCATGTCCTCCGTA 60.224 50.000 0.00 0.00 0.00 4.02
2371 5440 0.325933 TGACATCTCTGCCCTGTTGG 59.674 55.000 0.00 0.00 37.09 3.77
2416 5485 0.112412 AGTTCCCAAATTGACGCCCT 59.888 50.000 0.00 0.00 0.00 5.19
2459 5528 3.068881 CCAGGCAAGGTTCGAGGA 58.931 61.111 0.00 0.00 0.00 3.71
2562 5631 7.230712 TCCAATCGATCTTCACTACTGCTAATA 59.769 37.037 0.00 0.00 0.00 0.98
2593 5662 6.372659 ACTGATTTATTACACTGTCTGCCTTG 59.627 38.462 0.00 0.00 0.00 3.61
2604 5673 1.623811 GTCTGCCTTGTTGTAGGAGGA 59.376 52.381 0.00 0.00 37.50 3.71
2605 5674 1.902508 TCTGCCTTGTTGTAGGAGGAG 59.097 52.381 0.00 0.00 37.50 3.69
2639 5708 4.883585 AGCTTCATGTTATATGTGGTGTGG 59.116 41.667 0.00 0.00 0.00 4.17
2820 5889 2.886081 TGAAAATGTGCTGCGTTGTTT 58.114 38.095 0.00 0.00 0.00 2.83
2884 5953 3.615834 GCCTGCTTAAGCTTTCTGCATTT 60.616 43.478 26.90 0.00 45.94 2.32
2927 5996 3.650070 TGCACGCATTCATAAACCAAA 57.350 38.095 0.00 0.00 0.00 3.28
2963 6032 4.684242 GGCACTGGTTTTTATGTTTGCTAC 59.316 41.667 0.00 0.00 0.00 3.58
2985 6054 4.514401 CACCCTCTGTGGATTAAACTACC 58.486 47.826 0.00 0.00 41.52 3.18
2986 6055 4.225267 CACCCTCTGTGGATTAAACTACCT 59.775 45.833 0.00 0.00 41.52 3.08
2987 6056 5.424252 CACCCTCTGTGGATTAAACTACCTA 59.576 44.000 0.00 0.00 41.52 3.08
2988 6057 6.027482 ACCCTCTGTGGATTAAACTACCTAA 58.973 40.000 0.00 0.00 38.35 2.69
2989 6058 6.156429 ACCCTCTGTGGATTAAACTACCTAAG 59.844 42.308 0.00 0.00 38.35 2.18
2990 6059 6.383147 CCCTCTGTGGATTAAACTACCTAAGA 59.617 42.308 0.00 0.00 38.35 2.10
2991 6060 7.093024 CCCTCTGTGGATTAAACTACCTAAGAA 60.093 40.741 0.00 0.00 38.35 2.52
2992 6061 8.487028 CCTCTGTGGATTAAACTACCTAAGAAT 58.513 37.037 0.00 0.00 38.35 2.40
2993 6062 9.319143 CTCTGTGGATTAAACTACCTAAGAATG 57.681 37.037 0.00 0.00 0.00 2.67
2994 6063 9.042450 TCTGTGGATTAAACTACCTAAGAATGA 57.958 33.333 0.00 0.00 0.00 2.57
2995 6064 9.667107 CTGTGGATTAAACTACCTAAGAATGAA 57.333 33.333 0.00 0.00 0.00 2.57
3042 6111 5.304101 TGAAATGGATTGTTAGGCTGTTGTT 59.696 36.000 0.00 0.00 0.00 2.83
3043 6112 4.789012 ATGGATTGTTAGGCTGTTGTTG 57.211 40.909 0.00 0.00 0.00 3.33
3044 6113 3.561143 TGGATTGTTAGGCTGTTGTTGT 58.439 40.909 0.00 0.00 0.00 3.32
3048 6117 2.571212 TGTTAGGCTGTTGTTGTCCTG 58.429 47.619 0.00 0.00 0.00 3.86
3108 6177 9.008965 TGCTGAAACTGTTTTATCTATAAGCAA 57.991 29.630 7.28 0.00 0.00 3.91
3165 6234 6.366340 TGTCATTTAGAAGGTGGTTTTGGTA 58.634 36.000 0.00 0.00 0.00 3.25
3166 6235 6.834451 TGTCATTTAGAAGGTGGTTTTGGTAA 59.166 34.615 0.00 0.00 0.00 2.85
3173 6242 3.703921 AGGTGGTTTTGGTAAGTTGTGT 58.296 40.909 0.00 0.00 0.00 3.72
3239 6309 3.863400 GCCGTTGTTACCACTGTGAGTAT 60.863 47.826 9.86 0.00 0.00 2.12
3418 6488 7.443575 AGAGGATTCAATCTATTTTGATCCACG 59.556 37.037 0.00 0.00 36.64 4.94
3426 6496 1.732941 TTTTGATCCACGATGGGACG 58.267 50.000 0.00 0.00 40.44 4.79
3439 6509 1.996798 TGGGACGTAAAATTTGCCCA 58.003 45.000 3.39 3.39 42.95 5.36
3494 6564 0.588252 CTGTTCAGTCAAACGGGCTG 59.412 55.000 0.00 0.00 32.85 4.85
3500 6570 2.032634 GTCAAACGGGCTGATCGCA 61.033 57.895 0.00 0.00 41.67 5.10
3577 6648 8.213518 AGTATTTTGAAGTATGTATGCTGTGG 57.786 34.615 0.00 0.00 0.00 4.17
3717 6788 6.820656 AGAAGTGATAACTGGTTAGCAGATTG 59.179 38.462 18.76 0.00 41.39 2.67
3743 6814 6.638468 CAGGAACACAAAGAGTTCTTTTATGC 59.362 38.462 4.43 0.00 43.07 3.14
3744 6815 6.321181 AGGAACACAAAGAGTTCTTTTATGCA 59.679 34.615 4.43 0.00 43.07 3.96
3749 6838 6.415867 CACAAAGAGTTCTTTTATGCACTGTG 59.584 38.462 2.76 2.76 43.07 3.66
3775 6864 2.572104 GAGAACAGTAATCCCACCTGGT 59.428 50.000 0.00 0.00 34.77 4.00
3820 6909 4.526970 CATACACTAAGGCCCAAGAACAT 58.473 43.478 8.89 0.00 0.00 2.71
3856 6946 6.293735 CGTGATCTATGAACTCTTCCCTCTAC 60.294 46.154 0.00 0.00 0.00 2.59
3870 6960 2.761208 CCCTCTACTAGTTCACTGTGGG 59.239 54.545 8.11 3.40 0.00 4.61
3902 6992 7.255277 GGACCAAAGATTTTATCCTGCATCTAC 60.255 40.741 0.00 0.00 0.00 2.59
3903 6993 7.349598 ACCAAAGATTTTATCCTGCATCTACT 58.650 34.615 0.00 0.00 0.00 2.57
3956 7046 4.883585 TGTCATTTGTCAAGGATCCATAGC 59.116 41.667 15.82 1.93 0.00 2.97
3974 7064 6.615726 TCCATAGCCTATATAAACCCTCCATC 59.384 42.308 0.00 0.00 0.00 3.51
3977 7067 5.665701 AGCCTATATAAACCCTCCATCAGA 58.334 41.667 0.00 0.00 0.00 3.27
4001 7091 1.700186 GGAGAAGTTTGGAGAGGGTGT 59.300 52.381 0.00 0.00 0.00 4.16
4002 7092 2.289756 GGAGAAGTTTGGAGAGGGTGTC 60.290 54.545 0.00 0.00 0.00 3.67
4024 7121 5.065346 GTCGAGGTACAACTTACCCTACTAC 59.935 48.000 0.00 0.00 38.33 2.73
4025 7122 4.336713 CGAGGTACAACTTACCCTACTACC 59.663 50.000 0.00 0.00 38.33 3.18
4026 7123 5.264395 GAGGTACAACTTACCCTACTACCA 58.736 45.833 0.00 0.00 38.33 3.25
4027 7124 5.654370 AGGTACAACTTACCCTACTACCAA 58.346 41.667 0.00 0.00 38.33 3.67
4028 7125 6.084060 AGGTACAACTTACCCTACTACCAAA 58.916 40.000 0.00 0.00 38.33 3.28
4029 7126 6.014242 AGGTACAACTTACCCTACTACCAAAC 60.014 42.308 0.00 0.00 38.33 2.93
4030 7127 5.233083 ACAACTTACCCTACTACCAAACC 57.767 43.478 0.00 0.00 0.00 3.27
4031 7128 4.909695 ACAACTTACCCTACTACCAAACCT 59.090 41.667 0.00 0.00 0.00 3.50
4032 7129 5.012458 ACAACTTACCCTACTACCAAACCTC 59.988 44.000 0.00 0.00 0.00 3.85
4033 7130 4.099633 ACTTACCCTACTACCAAACCTCC 58.900 47.826 0.00 0.00 0.00 4.30
4034 7131 1.962558 ACCCTACTACCAAACCTCCC 58.037 55.000 0.00 0.00 0.00 4.30
4035 7132 1.439944 ACCCTACTACCAAACCTCCCT 59.560 52.381 0.00 0.00 0.00 4.20
4036 7133 2.117051 CCCTACTACCAAACCTCCCTC 58.883 57.143 0.00 0.00 0.00 4.30
4037 7134 2.117051 CCTACTACCAAACCTCCCTCC 58.883 57.143 0.00 0.00 0.00 4.30
4038 7135 2.561297 CCTACTACCAAACCTCCCTCCA 60.561 54.545 0.00 0.00 0.00 3.86
4039 7136 2.361085 ACTACCAAACCTCCCTCCAT 57.639 50.000 0.00 0.00 0.00 3.41
4040 7137 1.916181 ACTACCAAACCTCCCTCCATG 59.084 52.381 0.00 0.00 0.00 3.66
4041 7138 0.623723 TACCAAACCTCCCTCCATGC 59.376 55.000 0.00 0.00 0.00 4.06
4042 7139 1.380380 CCAAACCTCCCTCCATGCC 60.380 63.158 0.00 0.00 0.00 4.40
4043 7140 1.693640 CAAACCTCCCTCCATGCCT 59.306 57.895 0.00 0.00 0.00 4.75
4044 7141 0.040204 CAAACCTCCCTCCATGCCTT 59.960 55.000 0.00 0.00 0.00 4.35
4045 7142 0.786435 AAACCTCCCTCCATGCCTTT 59.214 50.000 0.00 0.00 0.00 3.11
4046 7143 0.786435 AACCTCCCTCCATGCCTTTT 59.214 50.000 0.00 0.00 0.00 2.27
4047 7144 1.681229 ACCTCCCTCCATGCCTTTTA 58.319 50.000 0.00 0.00 0.00 1.52
4048 7145 2.000048 ACCTCCCTCCATGCCTTTTAA 59.000 47.619 0.00 0.00 0.00 1.52
4049 7146 2.381961 ACCTCCCTCCATGCCTTTTAAA 59.618 45.455 0.00 0.00 0.00 1.52
4050 7147 2.760650 CCTCCCTCCATGCCTTTTAAAC 59.239 50.000 0.00 0.00 0.00 2.01
4051 7148 3.430453 CTCCCTCCATGCCTTTTAAACA 58.570 45.455 0.00 0.00 0.00 2.83
4052 7149 4.026052 CTCCCTCCATGCCTTTTAAACAT 58.974 43.478 0.00 0.00 0.00 2.71
4053 7150 4.424842 TCCCTCCATGCCTTTTAAACATT 58.575 39.130 0.00 0.00 0.00 2.71
4054 7151 4.222588 TCCCTCCATGCCTTTTAAACATTG 59.777 41.667 0.00 0.00 0.00 2.82
4055 7152 4.506758 CCTCCATGCCTTTTAAACATTGG 58.493 43.478 0.00 0.00 0.00 3.16
4118 7215 2.996621 AGAGTGTCGAATTTGCTAGTGC 59.003 45.455 0.00 0.00 40.20 4.40
4202 7299 6.317088 CAATTAGTCTTTGTTGCGATCATGT 58.683 36.000 0.00 0.00 0.00 3.21
4220 7317 5.754782 TCATGTTACCAATGATACTGCCTT 58.245 37.500 0.00 0.00 0.00 4.35
4233 7330 1.211457 ACTGCCTTGAGCCCTAATCTG 59.789 52.381 0.00 0.00 42.71 2.90
4234 7331 1.211457 CTGCCTTGAGCCCTAATCTGT 59.789 52.381 0.00 0.00 42.71 3.41
4290 7387 1.106351 AACCATTGTGTGAAGGCGCA 61.106 50.000 10.83 0.00 0.00 6.09
4293 7390 1.337074 CCATTGTGTGAAGGCGCAATT 60.337 47.619 10.83 2.51 44.26 2.32
4344 7441 2.024176 TTAGGCTGAAGGCGAATCAC 57.976 50.000 0.00 0.00 46.23 3.06
4379 7476 1.267121 AGTGTCGCCACCAGAGTATT 58.733 50.000 0.00 0.00 42.88 1.89
4401 7498 9.424319 GTATTAGAGATAAAAGGCGAATCATCA 57.576 33.333 0.00 0.00 0.00 3.07
4452 7549 2.361737 GAAGCCTCCCCAAGCCAC 60.362 66.667 0.00 0.00 0.00 5.01
4504 7601 5.551760 AATACAAGCTTCAAATGTCTCCG 57.448 39.130 0.00 0.00 0.00 4.63
4505 7602 2.154462 ACAAGCTTCAAATGTCTCCGG 58.846 47.619 0.00 0.00 0.00 5.14
4506 7603 1.135575 CAAGCTTCAAATGTCTCCGGC 60.136 52.381 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.158101 TGCTCGAAATCGTACAACAAAAA 57.842 34.783 2.41 0.00 40.80 1.94
2 3 5.636121 ACTATGCTCGAAATCGTACAACAAA 59.364 36.000 2.41 0.00 40.80 2.83
3 4 5.061684 CACTATGCTCGAAATCGTACAACAA 59.938 40.000 2.41 0.00 40.80 2.83
4 5 4.561213 CACTATGCTCGAAATCGTACAACA 59.439 41.667 2.41 0.00 40.80 3.33
7 8 4.142556 TGTCACTATGCTCGAAATCGTACA 60.143 41.667 2.41 3.19 40.80 2.90
8 9 4.348656 TGTCACTATGCTCGAAATCGTAC 58.651 43.478 2.41 0.00 40.80 3.67
9 10 4.625972 TGTCACTATGCTCGAAATCGTA 57.374 40.909 2.41 0.00 40.80 3.43
10 11 3.503827 TGTCACTATGCTCGAAATCGT 57.496 42.857 2.41 0.00 40.80 3.73
11 12 4.504097 TCAATGTCACTATGCTCGAAATCG 59.496 41.667 0.00 0.00 41.45 3.34
12 13 5.973651 TCAATGTCACTATGCTCGAAATC 57.026 39.130 0.00 0.00 0.00 2.17
13 14 5.277683 GCATCAATGTCACTATGCTCGAAAT 60.278 40.000 8.07 0.00 41.16 2.17
14 15 4.034394 GCATCAATGTCACTATGCTCGAAA 59.966 41.667 8.07 0.00 41.16 3.46
15 16 3.557185 GCATCAATGTCACTATGCTCGAA 59.443 43.478 8.07 0.00 41.16 3.71
16 17 3.126073 GCATCAATGTCACTATGCTCGA 58.874 45.455 8.07 0.00 41.16 4.04
17 18 3.516681 GCATCAATGTCACTATGCTCG 57.483 47.619 8.07 0.00 41.16 5.03
20 21 4.124970 TCTCAGCATCAATGTCACTATGC 58.875 43.478 7.47 7.47 43.97 3.14
21 22 4.750598 CCTCTCAGCATCAATGTCACTATG 59.249 45.833 0.00 0.00 0.00 2.23
22 23 4.743045 GCCTCTCAGCATCAATGTCACTAT 60.743 45.833 0.00 0.00 0.00 2.12
23 24 3.431346 GCCTCTCAGCATCAATGTCACTA 60.431 47.826 0.00 0.00 0.00 2.74
24 25 2.680221 GCCTCTCAGCATCAATGTCACT 60.680 50.000 0.00 0.00 0.00 3.41
25 26 1.669779 GCCTCTCAGCATCAATGTCAC 59.330 52.381 0.00 0.00 0.00 3.67
26 27 1.279846 TGCCTCTCAGCATCAATGTCA 59.720 47.619 0.00 0.00 38.00 3.58
27 28 1.669779 GTGCCTCTCAGCATCAATGTC 59.330 52.381 0.00 0.00 46.24 3.06
28 29 1.681166 GGTGCCTCTCAGCATCAATGT 60.681 52.381 0.00 0.00 46.24 2.71
29 30 1.022735 GGTGCCTCTCAGCATCAATG 58.977 55.000 0.00 0.00 46.24 2.82
30 31 0.917533 AGGTGCCTCTCAGCATCAAT 59.082 50.000 0.00 0.00 46.75 2.57
31 32 0.251354 GAGGTGCCTCTCAGCATCAA 59.749 55.000 10.80 0.00 46.75 2.57
32 33 0.906282 TGAGGTGCCTCTCAGCATCA 60.906 55.000 17.96 0.00 46.75 3.07
33 34 0.461693 GTGAGGTGCCTCTCAGCATC 60.462 60.000 17.96 0.00 46.24 3.91
34 35 1.601171 GTGAGGTGCCTCTCAGCAT 59.399 57.895 17.96 0.00 46.24 3.79
35 36 3.063526 GTGAGGTGCCTCTCAGCA 58.936 61.111 17.96 0.00 43.54 4.41
37 38 1.270414 ATGGGTGAGGTGCCTCTCAG 61.270 60.000 17.96 0.00 43.54 3.35
38 39 1.229625 ATGGGTGAGGTGCCTCTCA 60.230 57.895 17.96 13.52 43.12 3.27
39 40 1.222936 CATGGGTGAGGTGCCTCTC 59.777 63.158 17.96 14.31 43.12 3.20
40 41 2.304056 CCATGGGTGAGGTGCCTCT 61.304 63.158 17.96 0.00 43.12 3.69
41 42 2.273449 CCATGGGTGAGGTGCCTC 59.727 66.667 11.13 11.13 43.01 4.70
42 43 3.341629 CCCATGGGTGAGGTGCCT 61.342 66.667 23.93 0.00 0.00 4.75
44 45 3.590466 AAGCCCATGGGTGAGGTGC 62.590 63.158 31.58 15.34 37.65 5.01
45 46 1.379044 GAAGCCCATGGGTGAGGTG 60.379 63.158 31.58 5.02 37.65 4.00
46 47 2.616458 GGAAGCCCATGGGTGAGGT 61.616 63.158 31.58 12.66 37.65 3.85
47 48 2.276740 GGAAGCCCATGGGTGAGG 59.723 66.667 31.58 6.61 37.65 3.86
48 49 2.124570 CGGAAGCCCATGGGTGAG 60.125 66.667 31.58 14.91 37.65 3.51
49 50 2.478335 GAACGGAAGCCCATGGGTGA 62.478 60.000 31.58 0.00 37.65 4.02
50 51 2.035626 AACGGAAGCCCATGGGTG 59.964 61.111 31.58 17.99 37.65 4.61
51 52 2.198304 GAGAACGGAAGCCCATGGGT 62.198 60.000 31.58 13.70 37.65 4.51
52 53 1.452108 GAGAACGGAAGCCCATGGG 60.452 63.158 27.87 27.87 38.57 4.00
53 54 0.322456 TTGAGAACGGAAGCCCATGG 60.322 55.000 4.14 4.14 0.00 3.66
54 55 0.804989 GTTGAGAACGGAAGCCCATG 59.195 55.000 0.00 0.00 0.00 3.66
55 56 0.322546 GGTTGAGAACGGAAGCCCAT 60.323 55.000 0.00 0.00 0.00 4.00
56 57 1.072505 GGTTGAGAACGGAAGCCCA 59.927 57.895 0.00 0.00 0.00 5.36
57 58 0.536460 TTGGTTGAGAACGGAAGCCC 60.536 55.000 0.00 0.00 0.00 5.19
58 59 0.875059 CTTGGTTGAGAACGGAAGCC 59.125 55.000 0.00 0.00 0.00 4.35
59 60 1.878953 TCTTGGTTGAGAACGGAAGC 58.121 50.000 0.00 0.00 0.00 3.86
60 61 3.365364 GCATTCTTGGTTGAGAACGGAAG 60.365 47.826 0.00 0.00 38.39 3.46
61 62 2.552315 GCATTCTTGGTTGAGAACGGAA 59.448 45.455 0.00 0.00 38.39 4.30
62 63 2.151202 GCATTCTTGGTTGAGAACGGA 58.849 47.619 0.00 0.00 38.39 4.69
63 64 1.200020 GGCATTCTTGGTTGAGAACGG 59.800 52.381 0.00 0.00 38.39 4.44
64 65 2.154462 AGGCATTCTTGGTTGAGAACG 58.846 47.619 0.00 0.00 38.39 3.95
65 66 4.034510 CGATAGGCATTCTTGGTTGAGAAC 59.965 45.833 0.00 0.00 38.39 3.01
66 67 4.191544 CGATAGGCATTCTTGGTTGAGAA 58.808 43.478 0.00 0.00 39.76 2.87
67 68 3.797039 CGATAGGCATTCTTGGTTGAGA 58.203 45.455 0.00 0.00 0.00 3.27
68 69 2.289002 GCGATAGGCATTCTTGGTTGAG 59.711 50.000 0.00 0.00 42.87 3.02
69 70 2.288666 GCGATAGGCATTCTTGGTTGA 58.711 47.619 0.00 0.00 42.87 3.18
70 71 2.763249 GCGATAGGCATTCTTGGTTG 57.237 50.000 0.00 0.00 42.87 3.77
81 82 1.883084 CACGGGACAAGCGATAGGC 60.883 63.158 0.00 0.00 44.05 3.93
82 83 1.883084 GCACGGGACAAGCGATAGG 60.883 63.158 0.00 0.00 0.00 2.57
83 84 1.883084 GGCACGGGACAAGCGATAG 60.883 63.158 0.00 0.00 0.00 2.08
84 85 2.185867 GGCACGGGACAAGCGATA 59.814 61.111 0.00 0.00 0.00 2.92
85 86 3.665675 GAGGCACGGGACAAGCGAT 62.666 63.158 0.00 0.00 0.00 4.58
86 87 4.373116 GAGGCACGGGACAAGCGA 62.373 66.667 0.00 0.00 0.00 4.93
87 88 4.379243 AGAGGCACGGGACAAGCG 62.379 66.667 0.00 0.00 0.00 4.68
88 89 2.435059 GAGAGGCACGGGACAAGC 60.435 66.667 0.00 0.00 0.00 4.01
89 90 0.742281 CATGAGAGGCACGGGACAAG 60.742 60.000 0.00 0.00 0.00 3.16
90 91 1.296392 CATGAGAGGCACGGGACAA 59.704 57.895 0.00 0.00 0.00 3.18
91 92 1.480212 AACATGAGAGGCACGGGACA 61.480 55.000 0.00 0.00 0.00 4.02
92 93 0.321653 AAACATGAGAGGCACGGGAC 60.322 55.000 0.00 0.00 0.00 4.46
93 94 0.321564 CAAACATGAGAGGCACGGGA 60.322 55.000 0.00 0.00 0.00 5.14
94 95 1.308069 CCAAACATGAGAGGCACGGG 61.308 60.000 0.00 0.00 0.00 5.28
95 96 0.321564 TCCAAACATGAGAGGCACGG 60.322 55.000 0.00 0.00 0.00 4.94
96 97 0.798776 GTCCAAACATGAGAGGCACG 59.201 55.000 0.00 0.00 0.00 5.34
97 98 0.798776 CGTCCAAACATGAGAGGCAC 59.201 55.000 0.00 0.00 0.00 5.01
98 99 0.955428 GCGTCCAAACATGAGAGGCA 60.955 55.000 0.00 0.00 40.26 4.75
107 108 3.587933 GCCCAACGCGTCCAAACA 61.588 61.111 14.44 0.00 0.00 2.83
117 118 1.987855 TAGGAGTGGAGGCCCAACG 60.988 63.158 0.00 0.00 45.59 4.10
118 119 1.602771 GTAGGAGTGGAGGCCCAAC 59.397 63.158 0.00 0.00 45.59 3.77
119 120 1.615424 GGTAGGAGTGGAGGCCCAA 60.615 63.158 0.00 0.00 45.59 4.12
121 122 1.762858 GAGGTAGGAGTGGAGGCCC 60.763 68.421 0.00 0.00 0.00 5.80
122 123 1.762858 GGAGGTAGGAGTGGAGGCC 60.763 68.421 0.00 0.00 0.00 5.19
123 124 0.399233 ATGGAGGTAGGAGTGGAGGC 60.399 60.000 0.00 0.00 0.00 4.70
124 125 1.710816 GATGGAGGTAGGAGTGGAGG 58.289 60.000 0.00 0.00 0.00 4.30
126 127 0.924090 TCGATGGAGGTAGGAGTGGA 59.076 55.000 0.00 0.00 0.00 4.02
127 128 1.033574 GTCGATGGAGGTAGGAGTGG 58.966 60.000 0.00 0.00 0.00 4.00
134 138 0.108992 GCACGTTGTCGATGGAGGTA 60.109 55.000 0.00 0.00 40.62 3.08
146 150 3.850098 AAGCAGGGAGGGCACGTTG 62.850 63.158 0.00 0.00 0.00 4.10
153 167 4.120755 GAGGCCAAGCAGGGAGGG 62.121 72.222 5.01 0.00 38.09 4.30
160 174 2.664851 CGTTGTCGAGGCCAAGCA 60.665 61.111 5.01 0.00 39.71 3.91
161 175 2.357034 TCGTTGTCGAGGCCAAGC 60.357 61.111 5.01 0.00 41.35 4.01
176 190 2.675075 AACCGGGGGCAAATGTCG 60.675 61.111 6.32 0.00 0.00 4.35
209 223 4.216411 TCCTAAAGTCCCAAATCTTCCG 57.784 45.455 0.00 0.00 0.00 4.30
221 235 5.358298 AAGACATTTGCGTTCCTAAAGTC 57.642 39.130 0.00 0.00 0.00 3.01
225 239 5.957842 ATGAAAGACATTTGCGTTCCTAA 57.042 34.783 0.00 0.00 35.45 2.69
233 247 6.369890 TGAGACTCACTATGAAAGACATTTGC 59.630 38.462 0.00 0.00 40.07 3.68
249 263 2.486203 ACATCAGACGAGTGAGACTCAC 59.514 50.000 25.27 25.27 45.30 3.51
263 277 8.771920 ACAATGTTTCGAATAGTTACATCAGA 57.228 30.769 11.69 0.00 0.00 3.27
270 284 9.701098 AGTCACTAACAATGTTTCGAATAGTTA 57.299 29.630 3.17 3.86 0.00 2.24
279 293 9.783256 AAAGTGTAAAGTCACTAACAATGTTTC 57.217 29.630 3.17 0.00 46.25 2.78
309 323 9.809395 TCTTCTTCGAATCCCTAAATCTAGATA 57.191 33.333 5.46 0.00 0.00 1.98
312 326 7.870445 CCTTCTTCTTCGAATCCCTAAATCTAG 59.130 40.741 0.00 0.00 0.00 2.43
315 329 6.350103 ACCTTCTTCTTCGAATCCCTAAATC 58.650 40.000 0.00 0.00 0.00 2.17
317 331 5.757099 ACCTTCTTCTTCGAATCCCTAAA 57.243 39.130 0.00 0.00 0.00 1.85
318 332 5.757099 AACCTTCTTCTTCGAATCCCTAA 57.243 39.130 0.00 0.00 0.00 2.69
319 333 5.247564 TCAAACCTTCTTCTTCGAATCCCTA 59.752 40.000 0.00 0.00 0.00 3.53
320 334 4.041691 TCAAACCTTCTTCTTCGAATCCCT 59.958 41.667 0.00 0.00 0.00 4.20
321 335 4.154375 GTCAAACCTTCTTCTTCGAATCCC 59.846 45.833 0.00 0.00 0.00 3.85
322 336 4.755123 TGTCAAACCTTCTTCTTCGAATCC 59.245 41.667 0.00 0.00 0.00 3.01
326 340 4.703897 ACATGTCAAACCTTCTTCTTCGA 58.296 39.130 0.00 0.00 0.00 3.71
328 342 6.376978 CATGACATGTCAAACCTTCTTCTTC 58.623 40.000 31.00 0.00 43.58 2.87
332 346 4.279169 CACCATGACATGTCAAACCTTCTT 59.721 41.667 31.00 10.46 43.58 2.52
342 356 2.358898 GGTATTGCCACCATGACATGTC 59.641 50.000 19.27 19.27 38.55 3.06
371 386 2.791383 ACAGAGATGTGATAGAGCGC 57.209 50.000 0.00 0.00 0.00 5.92
379 394 2.353704 CGGCCAACTTACAGAGATGTGA 60.354 50.000 2.24 0.00 0.00 3.58
381 396 1.623811 ACGGCCAACTTACAGAGATGT 59.376 47.619 2.24 0.00 0.00 3.06
384 399 2.922740 AAACGGCCAACTTACAGAGA 57.077 45.000 2.24 0.00 0.00 3.10
386 401 2.359531 CCAAAAACGGCCAACTTACAGA 59.640 45.455 2.24 0.00 0.00 3.41
400 415 6.425721 GGTTATTACTCAAAAGGGCCAAAAAC 59.574 38.462 6.18 0.00 0.00 2.43
401 416 6.099845 TGGTTATTACTCAAAAGGGCCAAAAA 59.900 34.615 6.18 0.00 0.00 1.94
404 419 4.742012 TGGTTATTACTCAAAAGGGCCAA 58.258 39.130 6.18 0.00 0.00 4.52
429 469 3.591527 TCCTTCTAACCATCCAACCACAT 59.408 43.478 0.00 0.00 0.00 3.21
441 481 5.078949 GGGGATACTACTCTCCTTCTAACC 58.921 50.000 0.00 0.00 32.57 2.85
446 486 3.642377 GGTTGGGGATACTACTCTCCTTC 59.358 52.174 0.00 0.00 36.67 3.46
447 487 3.275228 AGGTTGGGGATACTACTCTCCTT 59.725 47.826 0.00 0.00 36.67 3.36
451 491 3.534747 TGGTAGGTTGGGGATACTACTCT 59.465 47.826 0.00 0.00 36.81 3.24
452 492 3.896272 CTGGTAGGTTGGGGATACTACTC 59.104 52.174 0.00 0.00 36.81 2.59
454 494 2.970640 CCTGGTAGGTTGGGGATACTAC 59.029 54.545 0.00 0.00 36.07 2.73
455 495 2.090380 CCCTGGTAGGTTGGGGATACTA 60.090 54.545 0.00 0.00 41.25 1.82
456 496 1.345112 CCCTGGTAGGTTGGGGATACT 60.345 57.143 0.00 0.00 41.25 2.12
457 497 1.137697 CCCTGGTAGGTTGGGGATAC 58.862 60.000 0.00 0.00 41.25 2.24
458 498 0.726366 ACCCTGGTAGGTTGGGGATA 59.274 55.000 3.72 0.00 44.97 2.59
459 499 1.483704 ACCCTGGTAGGTTGGGGAT 59.516 57.895 3.72 0.00 44.97 3.85
460 500 2.965473 ACCCTGGTAGGTTGGGGA 59.035 61.111 3.72 0.00 44.97 4.81
469 509 4.237018 AGTTTAGGACTTGAACCCTGGTA 58.763 43.478 0.00 0.00 33.92 3.25
471 511 3.790089 AGTTTAGGACTTGAACCCTGG 57.210 47.619 0.00 0.00 33.92 4.45
482 522 1.737793 CGATGGTGCCAAGTTTAGGAC 59.262 52.381 0.00 0.00 0.00 3.85
484 524 2.107950 TCGATGGTGCCAAGTTTAGG 57.892 50.000 0.00 0.00 0.00 2.69
488 528 1.369091 GCGATCGATGGTGCCAAGTT 61.369 55.000 21.57 0.00 0.00 2.66
494 534 0.040958 GGAAATGCGATCGATGGTGC 60.041 55.000 21.57 4.66 0.00 5.01
499 539 2.847327 ATCCAGGAAATGCGATCGAT 57.153 45.000 21.57 0.00 0.00 3.59
500 540 2.620251 AATCCAGGAAATGCGATCGA 57.380 45.000 21.57 4.34 0.00 3.59
501 541 5.362556 AATAAATCCAGGAAATGCGATCG 57.637 39.130 11.69 11.69 0.00 3.69
503 543 6.547141 TCTGAAATAAATCCAGGAAATGCGAT 59.453 34.615 0.00 0.00 0.00 4.58
533 579 1.354337 CTCCCACTGAACGCACATCG 61.354 60.000 0.00 0.00 45.38 3.84
562 608 0.041135 GTCGCCTTCCTAGTCGATCG 60.041 60.000 9.36 9.36 33.37 3.69
563 609 1.310904 AGTCGCCTTCCTAGTCGATC 58.689 55.000 0.00 0.00 33.37 3.69
564 610 1.765230 AAGTCGCCTTCCTAGTCGAT 58.235 50.000 0.00 0.00 33.37 3.59
571 617 2.039084 AGATTGACAAAGTCGCCTTCCT 59.961 45.455 0.00 0.00 34.95 3.36
580 626 7.362401 GGCACATCATCTTTAGATTGACAAAGT 60.362 37.037 0.00 0.00 34.17 2.66
581 627 6.971184 GGCACATCATCTTTAGATTGACAAAG 59.029 38.462 0.00 0.00 33.86 2.77
583 629 5.945191 TGGCACATCATCTTTAGATTGACAA 59.055 36.000 0.00 0.00 31.21 3.18
593 648 2.089980 GTGAGCTGGCACATCATCTTT 58.910 47.619 0.00 0.00 38.20 2.52
599 654 1.736681 GAGAAAGTGAGCTGGCACATC 59.263 52.381 8.15 5.96 41.19 3.06
605 660 0.108424 CCTCCGAGAAAGTGAGCTGG 60.108 60.000 0.00 0.00 0.00 4.85
607 662 0.605589 CACCTCCGAGAAAGTGAGCT 59.394 55.000 0.00 0.00 31.79 4.09
613 668 3.452474 CTTATGAGCACCTCCGAGAAAG 58.548 50.000 0.00 0.00 0.00 2.62
615 670 1.757118 CCTTATGAGCACCTCCGAGAA 59.243 52.381 0.00 0.00 0.00 2.87
619 674 1.341531 CTACCCTTATGAGCACCTCCG 59.658 57.143 0.00 0.00 0.00 4.63
629 684 1.594293 CGCGCACCCTACCCTTATG 60.594 63.158 8.75 0.00 0.00 1.90
633 688 4.078516 GAACGCGCACCCTACCCT 62.079 66.667 5.73 0.00 0.00 4.34
635 690 1.702491 GAATGAACGCGCACCCTACC 61.702 60.000 5.73 0.00 0.00 3.18
637 692 0.036765 AAGAATGAACGCGCACCCTA 60.037 50.000 5.73 0.00 0.00 3.53
644 699 3.865745 AGTCATCCTAAAGAATGAACGCG 59.134 43.478 3.53 3.53 0.00 6.01
649 704 8.650490 TGCACATATAGTCATCCTAAAGAATGA 58.350 33.333 0.00 0.00 0.00 2.57
661 716 9.813446 CACTCATACATATGCACATATAGTCAT 57.187 33.333 1.58 0.00 33.01 3.06
665 720 8.866956 CACACACTCATACATATGCACATATAG 58.133 37.037 1.58 0.43 33.01 1.31
679 734 4.449068 CAGTCCAAACTCACACACTCATAC 59.551 45.833 0.00 0.00 31.71 2.39
686 741 3.627395 AACTCAGTCCAAACTCACACA 57.373 42.857 0.00 0.00 31.71 3.72
757 813 9.185680 ACGGCCTATTTGATTTATAGAAAAAGT 57.814 29.630 0.00 0.00 0.00 2.66
779 841 0.887387 TGGCCTCACTGTTTTACGGC 60.887 55.000 3.32 0.00 36.83 5.68
788 850 0.749454 GTATTGGGCTGGCCTCACTG 60.749 60.000 21.72 0.00 36.10 3.66
794 856 0.255890 TCTTCAGTATTGGGCTGGCC 59.744 55.000 14.23 14.23 34.89 5.36
795 857 2.225467 GATCTTCAGTATTGGGCTGGC 58.775 52.381 0.00 0.00 34.89 4.85
796 858 2.173356 TGGATCTTCAGTATTGGGCTGG 59.827 50.000 0.00 0.00 34.89 4.85
817 884 1.456287 GCCTGTCCACTTCCTTGGT 59.544 57.895 0.00 0.00 37.93 3.67
848 915 1.739067 GGACGGAACCAAGGATGAAG 58.261 55.000 0.00 0.00 0.00 3.02
898 3967 2.908351 GTGGGTCTAGGGTTTGTTAGGA 59.092 50.000 0.00 0.00 0.00 2.94
899 3968 2.640826 TGTGGGTCTAGGGTTTGTTAGG 59.359 50.000 0.00 0.00 0.00 2.69
900 3969 3.558533 GGTGTGGGTCTAGGGTTTGTTAG 60.559 52.174 0.00 0.00 0.00 2.34
917 3986 2.890847 GATCGCCGTGAGAGGGTGTG 62.891 65.000 0.00 0.00 35.33 3.82
1013 4082 2.666190 GCTGTTGCGGACTGCTCA 60.666 61.111 7.96 6.22 46.26 4.26
1072 4141 1.381928 CCGAGCGCCTCCTTGTAGTA 61.382 60.000 2.29 0.00 0.00 1.82
1098 4167 2.990479 GGCATCTCCTTCACCGGT 59.010 61.111 0.00 0.00 0.00 5.28
1102 4171 1.522580 GCTCCGGCATCTCCTTCAC 60.523 63.158 0.00 0.00 38.54 3.18
1111 4180 3.564218 GGGGATGAGCTCCGGCAT 61.564 66.667 12.15 0.00 46.01 4.40
1141 4210 4.394712 CCCGAAGCAGAAGCCGGT 62.395 66.667 1.90 0.00 41.96 5.28
1219 4288 2.040278 TCTTGGACATCTTCTTGGTGGG 59.960 50.000 0.00 0.00 0.00 4.61
1222 4291 4.263243 CCTCTTCTTGGACATCTTCTTGGT 60.263 45.833 0.00 0.00 0.00 3.67
1236 4305 3.843999 CGACCTTCTCTTCCTCTTCTTG 58.156 50.000 0.00 0.00 0.00 3.02
1254 4323 1.587613 GTCTGCCTCGATCTGCGAC 60.588 63.158 0.00 0.00 45.59 5.19
1279 4348 2.507324 GCCGTCGCTGGAGTCTTC 60.507 66.667 0.00 0.00 0.00 2.87
1294 4363 3.255379 GAACAGATCGCCGTCGCC 61.255 66.667 0.00 0.00 35.26 5.54
1295 4364 3.607987 CGAACAGATCGCCGTCGC 61.608 66.667 0.00 0.00 45.89 5.19
1303 4372 1.861575 GCCGGAATCTTCGAACAGATC 59.138 52.381 5.05 0.00 31.87 2.75
1304 4373 1.802880 CGCCGGAATCTTCGAACAGAT 60.803 52.381 5.05 0.00 34.78 2.90
1305 4374 0.457853 CGCCGGAATCTTCGAACAGA 60.458 55.000 5.05 0.00 0.00 3.41
1306 4375 0.457853 TCGCCGGAATCTTCGAACAG 60.458 55.000 5.05 0.00 0.00 3.16
1307 4376 0.734942 GTCGCCGGAATCTTCGAACA 60.735 55.000 5.05 0.00 32.49 3.18
1308 4377 1.740043 CGTCGCCGGAATCTTCGAAC 61.740 60.000 5.05 0.00 32.49 3.95
1309 4378 1.515519 CGTCGCCGGAATCTTCGAA 60.516 57.895 5.05 0.00 32.49 3.71
1310 4379 2.101575 CGTCGCCGGAATCTTCGA 59.898 61.111 5.05 0.00 0.00 3.71
1428 4497 1.502163 CGGCCAAATCGAGATCAGCC 61.502 60.000 2.24 6.27 35.55 4.85
1476 4545 0.760567 AGGAGCAGATGGCCGATGTA 60.761 55.000 0.00 0.00 46.50 2.29
1521 4590 3.041940 GTGACGGCGGTGGTCAAG 61.042 66.667 13.24 0.00 45.20 3.02
1633 4702 1.741770 GATCGGTGGTGTCTGGTGC 60.742 63.158 0.00 0.00 0.00 5.01
1650 4719 0.244994 GGAGCAGCTTCTGAAGACGA 59.755 55.000 21.06 0.00 32.44 4.20
1659 4728 1.454201 GTAAAGTGGGGAGCAGCTTC 58.546 55.000 0.00 0.00 0.00 3.86
1663 4732 0.984230 TGAGGTAAAGTGGGGAGCAG 59.016 55.000 0.00 0.00 0.00 4.24
1794 4863 1.380524 GCACAGAGCTGATTGATGCT 58.619 50.000 4.21 0.00 42.82 3.79
1820 4889 7.039644 CCTCGAGGTAGATACTGTGGATTTTAT 60.040 40.741 24.04 0.00 0.00 1.40
1842 4911 1.669795 GGAAGGTTTGCAATTGCCTCG 60.670 52.381 26.94 0.00 41.18 4.63
1855 4924 2.154074 AGGCGTCCCTTGGAAGGTT 61.154 57.895 4.72 0.00 44.98 3.50
1920 4989 2.519302 GGGTCATCAATGGGGCCG 60.519 66.667 0.00 0.00 0.00 6.13
2049 5118 0.895100 TCACAAGGCCAGCCATTGAC 60.895 55.000 20.51 0.00 38.92 3.18
2085 5154 0.970937 TCTCGGCGAGTTCAGGGAAT 60.971 55.000 33.31 0.00 0.00 3.01
2133 5202 1.666888 GCTTCACGAAGGTTGGCATTG 60.667 52.381 8.78 0.00 38.80 2.82
2158 5227 4.898320 TGATCTTCTAGCTGCAGTTTTGA 58.102 39.130 16.64 8.60 0.00 2.69
2163 5232 4.959560 ATGATGATCTTCTAGCTGCAGT 57.040 40.909 16.64 4.79 0.00 4.40
2176 5245 9.381033 CTTATAGGATCCAGACAAATGATGATC 57.619 37.037 15.82 0.00 0.00 2.92
2225 5294 1.212935 GGTTGGGATGACATGCTACCT 59.787 52.381 17.95 0.00 0.00 3.08
2241 5310 0.165944 CTCGTAGCGCTTTTGGGTTG 59.834 55.000 18.68 0.00 34.56 3.77
2287 5356 2.293677 GTGATCGTACGGAGGACATGAT 59.706 50.000 16.52 0.00 0.00 2.45
2298 5367 3.491639 TGGTTTTCACAAGTGATCGTACG 59.508 43.478 9.53 9.53 39.64 3.67
2301 5370 3.963383 GTGGTTTTCACAAGTGATCGT 57.037 42.857 3.43 0.00 45.39 3.73
2371 5440 0.461961 ACTGACGGCCTTAGAGATGC 59.538 55.000 0.00 0.00 0.00 3.91
2372 5441 1.067821 GGACTGACGGCCTTAGAGATG 59.932 57.143 0.00 0.00 0.00 2.90
2416 5485 3.120792 GTGAGACAAAACTAGACGCACA 58.879 45.455 0.00 0.00 33.47 4.57
2459 5528 6.578545 CGTGTCACGAAAGAAAATTTGATCAT 59.421 34.615 20.75 0.00 46.05 2.45
2562 5631 7.279536 CAGACAGTGTAATAAATCAGTGAGCAT 59.720 37.037 0.00 0.00 38.09 3.79
2593 5662 6.716934 TGATACTCAATCTCCTCCTACAAC 57.283 41.667 0.00 0.00 35.45 3.32
2617 5686 4.881273 TCCACACCACATATAACATGAAGC 59.119 41.667 0.00 0.00 0.00 3.86
2639 5708 4.095483 CCCATTCTCTGTTACTTGTGCATC 59.905 45.833 0.00 0.00 0.00 3.91
2692 5761 8.497910 AGAAGTTGATATGACAGTATGGGTAT 57.502 34.615 0.00 0.00 43.62 2.73
2761 5830 6.183360 TGCTACATTCAACGAAAAACAGAGTT 60.183 34.615 0.00 0.00 0.00 3.01
2839 5908 6.446318 GCACAAGAAAAGTTTACCATCATCA 58.554 36.000 0.00 0.00 0.00 3.07
2884 5953 7.768582 TGCAAAACTAGTAAAGCAGCATCTATA 59.231 33.333 10.81 0.00 0.00 1.31
2927 5996 2.297701 CCAGTGCCTAGTGTTTGTGTT 58.702 47.619 0.00 0.00 0.00 3.32
3000 6069 9.945904 TCCATTTCAATCAATCATTTCATTCAA 57.054 25.926 0.00 0.00 0.00 2.69
3004 6073 9.899661 ACAATCCATTTCAATCAATCATTTCAT 57.100 25.926 0.00 0.00 0.00 2.57
3005 6074 9.727859 AACAATCCATTTCAATCAATCATTTCA 57.272 25.926 0.00 0.00 0.00 2.69
3008 6077 9.826574 CCTAACAATCCATTTCAATCAATCATT 57.173 29.630 0.00 0.00 0.00 2.57
3042 6111 4.148838 CACAAAAGGGGTATTTCAGGACA 58.851 43.478 0.00 0.00 0.00 4.02
3043 6112 3.056821 GCACAAAAGGGGTATTTCAGGAC 60.057 47.826 0.00 0.00 0.00 3.85
3044 6113 3.161866 GCACAAAAGGGGTATTTCAGGA 58.838 45.455 0.00 0.00 0.00 3.86
3048 6117 5.650543 CACATAGCACAAAAGGGGTATTTC 58.349 41.667 0.00 0.00 0.00 2.17
3108 6177 6.201425 TCGCGTTAACAGTCAAGTAAATCTTT 59.799 34.615 5.77 0.00 33.63 2.52
3111 6180 5.344128 TCTCGCGTTAACAGTCAAGTAAATC 59.656 40.000 5.77 0.00 0.00 2.17
3165 6234 2.094675 AGCTGCAAGTCAACACAACTT 58.905 42.857 1.02 0.00 37.44 2.66
3166 6235 1.755179 AGCTGCAAGTCAACACAACT 58.245 45.000 1.02 0.00 35.30 3.16
3173 6242 6.371548 AGAAACGATAATTAGCTGCAAGTCAA 59.628 34.615 1.02 0.00 35.30 3.18
3239 6309 1.267121 GCACAAGTCTGGTCCCTCTA 58.733 55.000 0.00 0.00 0.00 2.43
3418 6488 2.494073 TGGGCAAATTTTACGTCCCATC 59.506 45.455 3.39 0.00 38.72 3.51
3482 6552 2.785258 GCGATCAGCCCGTTTGAC 59.215 61.111 0.00 0.00 40.81 3.18
3717 6788 4.639135 AAAGAACTCTTTGTGTTCCTGC 57.361 40.909 3.91 0.00 43.87 4.85
3721 6792 7.166473 CAGTGCATAAAAGAACTCTTTGTGTTC 59.834 37.037 5.49 0.00 44.69 3.18
3722 6793 6.974622 CAGTGCATAAAAGAACTCTTTGTGTT 59.025 34.615 5.49 0.00 44.69 3.32
3723 6794 6.095440 ACAGTGCATAAAAGAACTCTTTGTGT 59.905 34.615 5.49 0.00 44.69 3.72
3749 6838 3.751698 GGTGGGATTACTGTTCTCACAAC 59.248 47.826 13.02 4.72 44.74 3.32
3765 6854 2.587060 AATAGGATCACCAGGTGGGA 57.413 50.000 20.14 0.99 41.15 4.37
3775 6864 5.072741 GCTTTGATGGGCTAAATAGGATCA 58.927 41.667 0.00 0.00 0.00 2.92
3820 6909 6.377429 AGTTCATAGATCACGGAGACAACTTA 59.623 38.462 0.00 0.00 0.00 2.24
3856 6946 2.158900 CCATAGGCCCACAGTGAACTAG 60.159 54.545 0.62 0.00 0.00 2.57
3870 6960 6.015940 CAGGATAAAATCTTTGGTCCATAGGC 60.016 42.308 9.22 0.00 30.93 3.93
3951 7041 7.345653 TCTGATGGAGGGTTTATATAGGCTATG 59.654 40.741 17.24 0.00 0.00 2.23
3956 7046 8.709308 CCTATTCTGATGGAGGGTTTATATAGG 58.291 40.741 0.00 0.00 0.00 2.57
3974 7064 5.396213 CCCTCTCCAAACTTCTCCTATTCTG 60.396 48.000 0.00 0.00 0.00 3.02
3977 7067 4.226168 CACCCTCTCCAAACTTCTCCTATT 59.774 45.833 0.00 0.00 0.00 1.73
4001 7091 4.307032 AGTAGGGTAAGTTGTACCTCGA 57.693 45.455 2.73 0.00 37.71 4.04
4002 7092 4.336713 GGTAGTAGGGTAAGTTGTACCTCG 59.663 50.000 2.73 0.00 37.71 4.63
4024 7121 1.380380 GGCATGGAGGGAGGTTTGG 60.380 63.158 0.00 0.00 0.00 3.28
4025 7122 0.040204 AAGGCATGGAGGGAGGTTTG 59.960 55.000 0.00 0.00 0.00 2.93
4026 7123 0.786435 AAAGGCATGGAGGGAGGTTT 59.214 50.000 0.00 0.00 0.00 3.27
4027 7124 0.786435 AAAAGGCATGGAGGGAGGTT 59.214 50.000 0.00 0.00 0.00 3.50
4028 7125 1.681229 TAAAAGGCATGGAGGGAGGT 58.319 50.000 0.00 0.00 0.00 3.85
4029 7126 2.760650 GTTTAAAAGGCATGGAGGGAGG 59.239 50.000 0.00 0.00 0.00 4.30
4030 7127 3.430453 TGTTTAAAAGGCATGGAGGGAG 58.570 45.455 0.00 0.00 0.00 4.30
4031 7128 3.534357 TGTTTAAAAGGCATGGAGGGA 57.466 42.857 0.00 0.00 0.00 4.20
4032 7129 4.506758 CAATGTTTAAAAGGCATGGAGGG 58.493 43.478 0.00 0.00 0.00 4.30
4033 7130 4.222588 TCCAATGTTTAAAAGGCATGGAGG 59.777 41.667 0.00 0.00 0.00 4.30
4034 7131 5.047092 AGTCCAATGTTTAAAAGGCATGGAG 60.047 40.000 8.76 0.00 0.00 3.86
4035 7132 4.837860 AGTCCAATGTTTAAAAGGCATGGA 59.162 37.500 0.00 0.00 0.00 3.41
4036 7133 5.151297 AGTCCAATGTTTAAAAGGCATGG 57.849 39.130 0.00 0.00 0.00 3.66
4037 7134 6.071391 ACCTAGTCCAATGTTTAAAAGGCATG 60.071 38.462 0.00 0.00 0.00 4.06
4038 7135 6.016555 ACCTAGTCCAATGTTTAAAAGGCAT 58.983 36.000 0.00 0.00 0.00 4.40
4039 7136 5.390387 ACCTAGTCCAATGTTTAAAAGGCA 58.610 37.500 0.00 0.00 0.00 4.75
4040 7137 5.977489 ACCTAGTCCAATGTTTAAAAGGC 57.023 39.130 0.00 0.00 0.00 4.35
4041 7138 9.159364 GTACTACCTAGTCCAATGTTTAAAAGG 57.841 37.037 0.00 0.00 37.73 3.11
4042 7139 9.939802 AGTACTACCTAGTCCAATGTTTAAAAG 57.060 33.333 0.00 0.00 37.73 2.27
4043 7140 9.933723 GAGTACTACCTAGTCCAATGTTTAAAA 57.066 33.333 0.00 0.00 37.73 1.52
4044 7141 9.317827 AGAGTACTACCTAGTCCAATGTTTAAA 57.682 33.333 0.00 0.00 37.73 1.52
4045 7142 8.890410 AGAGTACTACCTAGTCCAATGTTTAA 57.110 34.615 0.00 0.00 37.73 1.52
4047 7144 9.134055 GATAGAGTACTACCTAGTCCAATGTTT 57.866 37.037 0.00 0.00 37.73 2.83
4048 7145 7.444792 CGATAGAGTACTACCTAGTCCAATGTT 59.555 40.741 0.00 0.00 36.47 2.71
4049 7146 6.935771 CGATAGAGTACTACCTAGTCCAATGT 59.064 42.308 0.00 0.00 36.47 2.71
4050 7147 7.160049 TCGATAGAGTACTACCTAGTCCAATG 58.840 42.308 0.00 0.00 42.67 2.82
4051 7148 7.313740 TCGATAGAGTACTACCTAGTCCAAT 57.686 40.000 0.00 0.00 42.67 3.16
4052 7149 6.737720 TCGATAGAGTACTACCTAGTCCAA 57.262 41.667 0.00 0.00 42.67 3.53
4118 7215 3.997021 ACCTTAGAGCGAAGTTTGTCATG 59.003 43.478 0.00 0.00 0.00 3.07
4202 7299 4.199310 GCTCAAGGCAGTATCATTGGTAA 58.801 43.478 0.00 0.00 41.35 2.85
4220 7317 5.488341 GAAACAACTACAGATTAGGGCTCA 58.512 41.667 0.00 0.00 0.00 4.26
4344 7441 3.906008 CGACACTTTTATTTTGTGAGCGG 59.094 43.478 0.00 0.00 35.83 5.52
4379 7476 7.099764 GGATGATGATTCGCCTTTTATCTCTA 58.900 38.462 0.00 0.00 0.00 2.43
4419 7516 2.288030 GGCTTCACCAATGCTCATATGC 60.288 50.000 0.00 0.00 38.86 3.14
4452 7549 2.669569 CTTCAGTGCCACCCGGTG 60.670 66.667 10.95 10.95 33.28 4.94
4471 7568 0.732538 GCTTGTATTTGTGTGGCGGC 60.733 55.000 0.00 0.00 0.00 6.53
4477 7574 7.042797 AGACATTTGAAGCTTGTATTTGTGT 57.957 32.000 2.10 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.