Multiple sequence alignment - TraesCS7A01G467600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G467600 chr7A 100.000 5327 0 0 1782 7108 663948775 663954101 0.000000e+00 9838.0
1 TraesCS7A01G467600 chr7A 100.000 1362 0 0 1 1362 663946994 663948355 0.000000e+00 2516.0
2 TraesCS7A01G467600 chr7A 100.000 31 0 0 611 641 663947504 663947534 2.770000e-04 58.4
3 TraesCS7A01G467600 chr7A 100.000 31 0 0 511 541 663947604 663947634 2.770000e-04 58.4
4 TraesCS7A01G467600 chr7A 80.000 90 7 8 6998 7084 639645693 639645774 1.000000e-03 56.5
5 TraesCS7A01G467600 chr7B 96.764 2719 60 5 2083 4781 633677320 633674610 0.000000e+00 4508.0
6 TraesCS7A01G467600 chr7B 93.268 2258 70 26 4776 6958 633674355 633672105 0.000000e+00 3253.0
7 TraesCS7A01G467600 chr7B 97.351 1208 28 2 1 1207 633689519 633688315 0.000000e+00 2050.0
8 TraesCS7A01G467600 chr7B 95.385 325 3 4 1782 2096 633679771 633679449 2.290000e-139 507.0
9 TraesCS7A01G467600 chr7B 81.416 113 12 8 6999 7107 726853068 726852961 4.570000e-12 84.2
10 TraesCS7A01G467600 chr7B 100.000 31 0 0 511 541 633688911 633688881 2.770000e-04 58.4
11 TraesCS7A01G467600 chr3B 86.301 365 45 5 6022 6381 470606995 470607359 6.680000e-105 392.0
12 TraesCS7A01G467600 chr5A 77.701 722 103 27 1885 2565 457434350 457435054 8.650000e-104 388.0
13 TraesCS7A01G467600 chr5A 97.222 36 1 0 354 389 3811015 3811050 2.140000e-05 62.1
14 TraesCS7A01G467600 chr3D 84.848 363 50 5 6022 6379 361161857 361162219 1.880000e-95 361.0
15 TraesCS7A01G467600 chr5D 78.232 611 94 14 1978 2565 355202015 355202609 8.770000e-94 355.0
16 TraesCS7A01G467600 chr5D 82.105 95 14 3 6999 7093 563403201 563403292 2.130000e-10 78.7
17 TraesCS7A01G467600 chr5D 88.235 51 4 2 341 390 102118380 102118429 7.700000e-05 60.2
18 TraesCS7A01G467600 chr6A 78.369 564 74 18 2044 2566 294639177 294638621 8.890000e-84 322.0
19 TraesCS7A01G467600 chr6A 79.130 115 16 7 6998 7108 20195214 20195104 9.890000e-09 73.1
20 TraesCS7A01G467600 chr3A 82.692 364 45 10 6022 6381 481517702 481518051 2.490000e-79 307.0
21 TraesCS7A01G467600 chr3A 80.357 112 18 4 6997 7107 729602985 729603093 1.640000e-11 82.4
22 TraesCS7A01G467600 chr3A 80.460 87 14 3 7021 7107 10587271 10587354 5.950000e-06 63.9
23 TraesCS7A01G467600 chr1B 80.627 351 46 8 2075 2403 264350414 264350064 1.180000e-62 252.0
24 TraesCS7A01G467600 chr1B 91.667 108 9 0 2566 2673 589055517 589055410 4.440000e-32 150.0
25 TraesCS7A01G467600 chr1A 79.221 385 58 18 1878 2246 519624181 519624559 1.530000e-61 248.0
26 TraesCS7A01G467600 chr1A 90.909 55 5 0 7054 7108 257965344 257965398 2.750000e-09 75.0
27 TraesCS7A01G467600 chr1A 97.143 35 0 1 362 396 503954748 503954781 2.770000e-04 58.4
28 TraesCS7A01G467600 chr6B 87.440 207 22 4 2044 2248 377929787 377929583 1.190000e-57 235.0
29 TraesCS7A01G467600 chr4B 92.453 106 8 0 2565 2670 583994598 583994493 1.230000e-32 152.0
30 TraesCS7A01G467600 chr4B 89.908 109 11 0 2565 2673 621511579 621511687 2.670000e-29 141.0
31 TraesCS7A01G467600 chr2B 91.667 108 9 0 2566 2673 514395766 514395873 4.440000e-32 150.0
32 TraesCS7A01G467600 chr2B 88.596 114 12 1 2564 2677 142921446 142921558 3.460000e-28 137.0
33 TraesCS7A01G467600 chr7D 91.589 107 9 0 2567 2673 267124058 267124164 1.600000e-31 148.0
34 TraesCS7A01G467600 chr7D 83.036 112 14 5 6998 7107 52054975 52054867 5.870000e-16 97.1
35 TraesCS7A01G467600 chr7D 82.143 112 16 4 6998 7108 153313980 153313872 7.590000e-15 93.5
36 TraesCS7A01G467600 chrUn 90.741 108 10 0 2566 2673 51452239 51452132 2.070000e-30 145.0
37 TraesCS7A01G467600 chr4D 89.815 108 9 2 2567 2673 18693539 18693433 3.460000e-28 137.0
38 TraesCS7A01G467600 chr2D 80.909 110 15 4 7000 7108 121700247 121700143 1.640000e-11 82.4
39 TraesCS7A01G467600 chr2D 97.143 35 0 1 360 394 166807895 166807862 2.770000e-04 58.4
40 TraesCS7A01G467600 chr5B 97.222 36 1 0 361 396 272616241 272616206 2.140000e-05 62.1
41 TraesCS7A01G467600 chr5B 91.304 46 1 3 360 405 572819872 572819830 7.700000e-05 60.2
42 TraesCS7A01G467600 chr2A 100.000 33 0 0 359 391 774627168 774627200 2.140000e-05 62.1
43 TraesCS7A01G467600 chr6D 90.698 43 2 2 361 402 121156913 121156872 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G467600 chr7A 663946994 663954101 7107 False 3117.7 9838 100.0000 1 7108 4 chr7A.!!$F2 7107
1 TraesCS7A01G467600 chr7B 633672105 633679771 7666 True 2756.0 4508 95.1390 1782 6958 3 chr7B.!!$R2 5176
2 TraesCS7A01G467600 chr7B 633688315 633689519 1204 True 1054.2 2050 98.6755 1 1207 2 chr7B.!!$R3 1206
3 TraesCS7A01G467600 chr5A 457434350 457435054 704 False 388.0 388 77.7010 1885 2565 1 chr5A.!!$F2 680
4 TraesCS7A01G467600 chr5D 355202015 355202609 594 False 355.0 355 78.2320 1978 2565 1 chr5D.!!$F2 587
5 TraesCS7A01G467600 chr6A 294638621 294639177 556 True 322.0 322 78.3690 2044 2566 1 chr6A.!!$R2 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
194 196 0.747852 ACAAAATTGCGGAACCGGTT 59.252 45.0 22.50 22.50 40.19 4.44 F
1216 1218 0.471971 CCGGGATATCCAGGGTGAGT 60.472 60.0 28.22 0.00 46.01 3.41 F
1247 1249 0.249120 TCCGAAGCACCTACATGTGG 59.751 55.0 9.11 5.17 36.73 4.17 F
2196 4373 0.466922 GCCTGCATAGAACCTGCCAT 60.467 55.0 0.00 0.00 38.89 4.40 F
3011 5218 0.892358 AGCCATAGCCATCGCATTGG 60.892 55.0 0.13 0.13 41.25 3.16 F
4143 6350 0.036105 ATGTTGCCTGATGCTCGTGA 60.036 50.0 0.00 0.00 42.00 4.35 F
4146 6353 0.321346 TTGCCTGATGCTCGTGAGAA 59.679 50.0 0.00 0.00 41.32 2.87 F
5334 7824 0.457035 GGTGGTATGGCATGCTGTTG 59.543 55.0 18.92 0.00 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1229 1231 0.036388 ACCACATGTAGGTGCTTCGG 60.036 55.000 16.20 5.53 38.13 4.30 R
3011 5218 0.252057 AACTTATGGTTGGGCCCCAC 60.252 55.000 22.27 19.92 36.70 4.61 R
3043 5250 0.456628 GAGCTTGGAGGTCTCGGTAC 59.543 60.000 0.00 0.00 39.50 3.34 R
3556 5763 1.183549 AGGCTGGTACCAAGACTACG 58.816 55.000 17.11 3.21 0.00 3.51 R
4811 7296 2.378547 TGCATACCCCTTCAGGTTCTTT 59.621 45.455 0.00 0.00 41.58 2.52 R
5454 7944 0.035458 CCACACTGGACTCCTCCAAC 59.965 60.000 0.00 0.00 46.63 3.77 R
5492 7982 1.557099 GAACCTTCCCAAATCCACCC 58.443 55.000 0.00 0.00 0.00 4.61 R
6975 9534 0.321653 GTGTACTTGCACAGAGGGGG 60.322 60.000 0.00 0.00 39.07 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
173 175 3.632145 GTGATTTGCTCAATTATCCGGGT 59.368 43.478 0.00 0.00 35.07 5.28
194 196 0.747852 ACAAAATTGCGGAACCGGTT 59.252 45.000 22.50 22.50 40.19 4.44
222 224 5.639506 AGATGTTTACACTCGGTCAAATCTG 59.360 40.000 0.00 0.00 0.00 2.90
247 249 9.926158 TGTTGCTGTGATGTGATTATTTATTTT 57.074 25.926 0.00 0.00 0.00 1.82
379 381 4.280174 TCTTAACTAGATGATACCCCACGC 59.720 45.833 0.00 0.00 0.00 5.34
411 413 5.163663 CGGAGATATCATCTAGTTGCCTCTC 60.164 48.000 5.32 13.34 40.38 3.20
422 424 3.077359 AGTTGCCTCTCGGATTTTTCAG 58.923 45.455 0.00 0.00 0.00 3.02
425 427 3.074412 TGCCTCTCGGATTTTTCAGTTC 58.926 45.455 0.00 0.00 0.00 3.01
483 485 5.653255 ATACTAGAAATGCCCCAGTCATT 57.347 39.130 0.00 0.00 35.83 2.57
492 494 1.736696 GCCCCAGTCATTTGAATTGCG 60.737 52.381 0.00 0.00 0.00 4.85
498 500 1.067635 GTCATTTGAATTGCGCCCACT 60.068 47.619 4.18 0.00 0.00 4.00
761 763 7.898918 ACAGTTGGATCAATCAAAATCATTCA 58.101 30.769 0.00 0.00 0.00 2.57
834 836 0.755686 CCTAGGAGCTCACCATGGTC 59.244 60.000 16.53 3.82 0.00 4.02
879 881 6.099341 GCAACCCTGGTTCTGTATATTTTTG 58.901 40.000 0.00 0.00 36.00 2.44
885 887 7.416664 CCCTGGTTCTGTATATTTTTGATGTGG 60.417 40.741 0.00 0.00 0.00 4.17
892 894 8.729756 TCTGTATATTTTTGATGTGGTCAACAG 58.270 33.333 0.00 0.00 46.14 3.16
901 903 5.885881 TGATGTGGTCAACAGTTGTTTTAC 58.114 37.500 13.14 3.92 43.64 2.01
1147 1149 6.872020 GTGTTAGTTAGATTGGTAGTGAGCAA 59.128 38.462 0.00 0.00 46.54 3.91
1207 1209 8.314751 CAATTATACCTCATATCCGGGATATCC 58.685 40.741 23.62 13.87 33.52 2.59
1208 1210 3.776731 ACCTCATATCCGGGATATCCA 57.223 47.619 23.62 13.76 33.52 3.41
1209 1211 3.647636 ACCTCATATCCGGGATATCCAG 58.352 50.000 23.62 20.46 33.52 3.86
1214 1216 4.639726 CCGGGATATCCAGGGTGA 57.360 61.111 28.22 0.00 46.01 4.02
1215 1217 2.366469 CCGGGATATCCAGGGTGAG 58.634 63.158 28.22 6.84 46.01 3.51
1216 1218 0.471971 CCGGGATATCCAGGGTGAGT 60.472 60.000 28.22 0.00 46.01 3.41
1217 1219 0.969894 CGGGATATCCAGGGTGAGTC 59.030 60.000 23.27 1.65 37.91 3.36
1218 1220 1.757764 CGGGATATCCAGGGTGAGTCA 60.758 57.143 23.27 0.00 37.91 3.41
1219 1221 2.408565 GGGATATCCAGGGTGAGTCAA 58.591 52.381 23.27 0.00 37.91 3.18
1220 1222 2.104963 GGGATATCCAGGGTGAGTCAAC 59.895 54.545 23.27 0.00 37.91 3.18
1221 1223 2.771943 GGATATCCAGGGTGAGTCAACA 59.228 50.000 17.34 0.00 35.64 3.33
1222 1224 3.199946 GGATATCCAGGGTGAGTCAACAA 59.800 47.826 17.34 0.00 35.64 2.83
1223 1225 4.141390 GGATATCCAGGGTGAGTCAACAAT 60.141 45.833 17.34 0.48 35.64 2.71
1224 1226 3.814504 ATCCAGGGTGAGTCAACAATT 57.185 42.857 11.03 0.00 0.00 2.32
1225 1227 3.593442 TCCAGGGTGAGTCAACAATTT 57.407 42.857 11.03 0.00 0.00 1.82
1226 1228 3.221771 TCCAGGGTGAGTCAACAATTTG 58.778 45.455 11.03 2.64 0.00 2.32
1227 1229 2.958355 CCAGGGTGAGTCAACAATTTGT 59.042 45.455 11.03 0.00 34.02 2.83
1228 1230 3.384467 CCAGGGTGAGTCAACAATTTGTT 59.616 43.478 11.03 8.97 42.08 2.83
1229 1231 4.499696 CCAGGGTGAGTCAACAATTTGTTC 60.500 45.833 11.03 2.66 38.77 3.18
1230 1232 3.636764 AGGGTGAGTCAACAATTTGTTCC 59.363 43.478 11.03 8.92 38.77 3.62
1231 1233 3.550030 GGGTGAGTCAACAATTTGTTCCG 60.550 47.826 11.03 2.87 38.77 4.30
1232 1234 3.314080 GGTGAGTCAACAATTTGTTCCGA 59.686 43.478 11.78 5.16 38.77 4.55
1233 1235 4.201970 GGTGAGTCAACAATTTGTTCCGAA 60.202 41.667 11.78 0.00 38.77 4.30
1234 1236 4.970003 GTGAGTCAACAATTTGTTCCGAAG 59.030 41.667 11.78 1.49 38.77 3.79
1235 1237 3.964909 AGTCAACAATTTGTTCCGAAGC 58.035 40.909 11.78 0.00 38.77 3.86
1236 1238 3.380004 AGTCAACAATTTGTTCCGAAGCA 59.620 39.130 11.78 0.00 38.77 3.91
1237 1239 3.485743 GTCAACAATTTGTTCCGAAGCAC 59.514 43.478 11.78 0.00 38.77 4.40
1238 1240 2.793278 ACAATTTGTTCCGAAGCACC 57.207 45.000 0.00 0.00 0.00 5.01
1239 1241 2.306847 ACAATTTGTTCCGAAGCACCT 58.693 42.857 0.00 0.00 0.00 4.00
1240 1242 3.482436 ACAATTTGTTCCGAAGCACCTA 58.518 40.909 0.00 0.00 0.00 3.08
1241 1243 3.252458 ACAATTTGTTCCGAAGCACCTAC 59.748 43.478 0.00 0.00 0.00 3.18
1242 1244 2.623878 TTTGTTCCGAAGCACCTACA 57.376 45.000 0.00 0.00 0.00 2.74
1243 1245 2.851263 TTGTTCCGAAGCACCTACAT 57.149 45.000 0.00 0.00 0.00 2.29
1244 1246 2.093306 TGTTCCGAAGCACCTACATG 57.907 50.000 0.00 0.00 0.00 3.21
1245 1247 1.346395 TGTTCCGAAGCACCTACATGT 59.654 47.619 2.69 2.69 0.00 3.21
1246 1248 1.732259 GTTCCGAAGCACCTACATGTG 59.268 52.381 9.11 0.00 39.29 3.21
1247 1249 0.249120 TCCGAAGCACCTACATGTGG 59.751 55.000 9.11 5.17 36.73 4.17
1249 1251 1.206132 CCGAAGCACCTACATGTGGTA 59.794 52.381 16.42 0.00 45.57 3.25
1250 1252 2.540515 CGAAGCACCTACATGTGGTAG 58.459 52.381 16.42 12.74 45.57 3.18
1264 1266 6.927416 ACATGTGGTAGATCGTTTACTAACA 58.073 36.000 0.00 0.00 34.52 2.41
1265 1267 7.380536 ACATGTGGTAGATCGTTTACTAACAA 58.619 34.615 0.00 0.00 37.91 2.83
1266 1268 7.544566 ACATGTGGTAGATCGTTTACTAACAAG 59.455 37.037 0.00 0.00 37.91 3.16
1267 1269 5.865552 TGTGGTAGATCGTTTACTAACAAGC 59.134 40.000 0.00 0.00 37.91 4.01
1268 1270 5.865552 GTGGTAGATCGTTTACTAACAAGCA 59.134 40.000 0.00 0.00 37.91 3.91
1269 1271 6.534079 GTGGTAGATCGTTTACTAACAAGCAT 59.466 38.462 0.00 0.00 37.91 3.79
1270 1272 7.064253 GTGGTAGATCGTTTACTAACAAGCATT 59.936 37.037 0.00 0.00 37.91 3.56
1271 1273 8.252417 TGGTAGATCGTTTACTAACAAGCATTA 58.748 33.333 0.00 0.00 34.08 1.90
1272 1274 9.090692 GGTAGATCGTTTACTAACAAGCATTAA 57.909 33.333 0.00 0.00 33.75 1.40
1273 1275 9.897349 GTAGATCGTTTACTAACAAGCATTAAC 57.103 33.333 0.00 0.00 33.75 2.01
1274 1276 8.773404 AGATCGTTTACTAACAAGCATTAACT 57.227 30.769 0.00 0.00 33.75 2.24
1275 1277 8.656849 AGATCGTTTACTAACAAGCATTAACTG 58.343 33.333 0.00 0.00 33.75 3.16
1276 1278 6.595794 TCGTTTACTAACAAGCATTAACTGC 58.404 36.000 0.00 2.73 41.68 4.40
1277 1279 5.503376 CGTTTACTAACAAGCATTAACTGCG 59.497 40.000 0.00 0.00 44.01 5.18
1278 1280 6.368213 GTTTACTAACAAGCATTAACTGCGT 58.632 36.000 0.00 0.21 43.64 5.24
1279 1281 6.854381 GTTTACTAACAAGCATTAACTGCGTT 59.146 34.615 0.00 0.02 43.64 4.84
1280 1282 7.377662 GTTTACTAACAAGCATTAACTGCGTTT 59.622 33.333 0.00 0.00 43.64 3.60
1285 1287 1.067693 GCATTAACTGCGTTTTGCCC 58.932 50.000 13.09 0.00 45.60 5.36
1286 1288 1.708822 CATTAACTGCGTTTTGCCCC 58.291 50.000 0.00 0.00 45.60 5.80
1287 1289 1.000283 CATTAACTGCGTTTTGCCCCA 60.000 47.619 0.00 0.00 45.60 4.96
1288 1290 0.671251 TTAACTGCGTTTTGCCCCAG 59.329 50.000 0.00 0.00 45.60 4.45
1289 1291 1.801309 TAACTGCGTTTTGCCCCAGC 61.801 55.000 0.00 0.00 45.60 4.85
1290 1292 4.362476 CTGCGTTTTGCCCCAGCC 62.362 66.667 0.00 0.00 45.60 4.85
1291 1293 4.912395 TGCGTTTTGCCCCAGCCT 62.912 61.111 0.00 0.00 45.60 4.58
1292 1294 2.675075 GCGTTTTGCCCCAGCCTA 60.675 61.111 0.00 0.00 38.69 3.93
1293 1295 2.700773 GCGTTTTGCCCCAGCCTAG 61.701 63.158 0.00 0.00 38.69 3.02
1294 1296 1.303317 CGTTTTGCCCCAGCCTAGT 60.303 57.895 0.00 0.00 38.69 2.57
1295 1297 1.586154 CGTTTTGCCCCAGCCTAGTG 61.586 60.000 0.00 0.00 38.69 2.74
1296 1298 1.606313 TTTTGCCCCAGCCTAGTGC 60.606 57.895 0.00 0.00 38.69 4.40
1297 1299 3.583882 TTTGCCCCAGCCTAGTGCC 62.584 63.158 0.21 0.00 42.71 5.01
1299 1301 2.768344 GCCCCAGCCTAGTGCCTA 60.768 66.667 0.21 0.00 42.71 3.93
1300 1302 2.150051 GCCCCAGCCTAGTGCCTAT 61.150 63.158 0.21 0.00 42.71 2.57
1301 1303 2.062070 CCCCAGCCTAGTGCCTATC 58.938 63.158 0.21 0.00 42.71 2.08
1302 1304 0.472734 CCCCAGCCTAGTGCCTATCT 60.473 60.000 0.21 0.00 42.71 1.98
1303 1305 1.428869 CCCAGCCTAGTGCCTATCTT 58.571 55.000 0.21 0.00 42.71 2.40
1304 1306 2.609747 CCCAGCCTAGTGCCTATCTTA 58.390 52.381 0.21 0.00 42.71 2.10
1305 1307 2.300437 CCCAGCCTAGTGCCTATCTTAC 59.700 54.545 0.21 0.00 42.71 2.34
1306 1308 2.300437 CCAGCCTAGTGCCTATCTTACC 59.700 54.545 0.21 0.00 42.71 2.85
1307 1309 3.235200 CAGCCTAGTGCCTATCTTACCT 58.765 50.000 0.21 0.00 42.71 3.08
1308 1310 4.408276 CAGCCTAGTGCCTATCTTACCTA 58.592 47.826 0.21 0.00 42.71 3.08
1309 1311 4.833380 CAGCCTAGTGCCTATCTTACCTAA 59.167 45.833 0.21 0.00 42.71 2.69
1310 1312 5.047660 CAGCCTAGTGCCTATCTTACCTAAG 60.048 48.000 0.21 0.00 42.71 2.18
1311 1313 4.221041 GCCTAGTGCCTATCTTACCTAAGG 59.779 50.000 0.00 0.00 34.14 2.69
1316 1318 3.662247 CCTATCTTACCTAAGGCACGG 57.338 52.381 0.00 0.00 34.14 4.94
1317 1319 2.288886 CCTATCTTACCTAAGGCACGGC 60.289 54.545 0.00 0.00 34.14 5.68
1318 1320 1.497161 ATCTTACCTAAGGCACGGCT 58.503 50.000 0.00 0.00 34.14 5.52
1319 1321 2.148446 TCTTACCTAAGGCACGGCTA 57.852 50.000 0.00 0.00 34.14 3.93
1320 1322 2.029623 TCTTACCTAAGGCACGGCTAG 58.970 52.381 0.00 0.00 34.14 3.42
1321 1323 1.755380 CTTACCTAAGGCACGGCTAGT 59.245 52.381 0.00 0.00 0.00 2.57
1322 1324 4.744061 TCTTACCTAAGGCACGGCTAGTG 61.744 52.174 8.20 8.20 41.51 2.74
1333 1335 2.348666 CACGGCTAGTGTGATTAAGTGC 59.651 50.000 10.63 0.00 45.51 4.40
1334 1336 2.233922 ACGGCTAGTGTGATTAAGTGCT 59.766 45.455 0.00 0.00 0.00 4.40
1335 1337 3.446161 ACGGCTAGTGTGATTAAGTGCTA 59.554 43.478 0.00 0.00 0.00 3.49
1336 1338 4.045104 CGGCTAGTGTGATTAAGTGCTAG 58.955 47.826 0.00 0.00 0.00 3.42
1337 1339 4.372656 GGCTAGTGTGATTAAGTGCTAGG 58.627 47.826 0.00 0.00 0.00 3.02
1338 1340 3.804873 GCTAGTGTGATTAAGTGCTAGGC 59.195 47.826 0.00 0.00 0.00 3.93
1339 1341 3.981071 AGTGTGATTAAGTGCTAGGCA 57.019 42.857 0.00 0.00 35.60 4.75
1340 1342 4.494091 AGTGTGATTAAGTGCTAGGCAT 57.506 40.909 0.00 0.00 41.91 4.40
1341 1343 4.848357 AGTGTGATTAAGTGCTAGGCATT 58.152 39.130 0.00 0.00 41.91 3.56
1342 1344 5.989477 AGTGTGATTAAGTGCTAGGCATTA 58.011 37.500 0.00 0.00 41.91 1.90
1343 1345 6.595682 AGTGTGATTAAGTGCTAGGCATTAT 58.404 36.000 0.00 0.00 41.91 1.28
1344 1346 6.484643 AGTGTGATTAAGTGCTAGGCATTATG 59.515 38.462 0.00 0.00 41.91 1.90
1345 1347 6.260936 GTGTGATTAAGTGCTAGGCATTATGT 59.739 38.462 0.00 0.00 41.91 2.29
1346 1348 6.828273 TGTGATTAAGTGCTAGGCATTATGTT 59.172 34.615 0.00 0.00 41.91 2.71
1347 1349 7.134815 GTGATTAAGTGCTAGGCATTATGTTG 58.865 38.462 0.00 0.00 41.91 3.33
1348 1350 5.499139 TTAAGTGCTAGGCATTATGTTGC 57.501 39.130 0.00 0.00 41.91 4.17
1356 1358 2.781945 GCATTATGTTGCCACCTAGC 57.218 50.000 0.00 0.00 36.60 3.42
1357 1359 1.002468 GCATTATGTTGCCACCTAGCG 60.002 52.381 0.00 0.00 36.60 4.26
1358 1360 1.002468 CATTATGTTGCCACCTAGCGC 60.002 52.381 0.00 0.00 34.65 5.92
1359 1361 0.746563 TTATGTTGCCACCTAGCGCC 60.747 55.000 2.29 0.00 34.65 6.53
1360 1362 1.622607 TATGTTGCCACCTAGCGCCT 61.623 55.000 2.29 0.00 34.65 5.52
1361 1363 1.622607 ATGTTGCCACCTAGCGCCTA 61.623 55.000 2.29 0.00 34.65 3.93
1927 1934 3.620427 ACAGAGTACAAACACACACCA 57.380 42.857 0.00 0.00 0.00 4.17
1928 1935 3.267483 ACAGAGTACAAACACACACCAC 58.733 45.455 0.00 0.00 0.00 4.16
2196 4373 0.466922 GCCTGCATAGAACCTGCCAT 60.467 55.000 0.00 0.00 38.89 4.40
2206 4383 6.127225 GCATAGAACCTGCCATCATAGAGATA 60.127 42.308 0.00 0.00 34.92 1.98
2403 4602 6.574269 CGGTCAGCCATCCAACATCTATTATA 60.574 42.308 0.00 0.00 34.09 0.98
2469 4668 4.236935 CATGGTTTCCAAATCAACTTCCG 58.763 43.478 0.00 0.00 36.95 4.30
2753 4959 3.077705 CGCACCATGAACCGTACG 58.922 61.111 8.69 8.69 0.00 3.67
2812 5018 1.651240 CGGAGCAAGGTCAGCAATGG 61.651 60.000 1.42 0.00 0.00 3.16
2968 5175 2.368875 TGTCAAGGTTCTCTTCTCCACC 59.631 50.000 0.00 0.00 32.41 4.61
3011 5218 0.892358 AGCCATAGCCATCGCATTGG 60.892 55.000 0.13 0.13 41.25 3.16
3043 5250 9.423061 CCCAACCATAAGTTTTTAAATCAAGAG 57.577 33.333 0.00 0.00 36.18 2.85
3057 5264 1.353358 TCAAGAGTACCGAGACCTCCA 59.647 52.381 0.00 0.00 0.00 3.86
3106 5313 4.563976 GCTATGCAATCAAACAATGACCAC 59.436 41.667 0.00 0.00 41.93 4.16
3131 5338 2.902608 TGCCTCTTAACTTCCTCTCCA 58.097 47.619 0.00 0.00 0.00 3.86
3148 5355 1.144913 TCCACAAGAAACCCCTTCTGG 59.855 52.381 0.00 0.00 44.00 3.86
3166 5373 4.671831 TCTGGTTTTATCAATTGCCCTCA 58.328 39.130 0.00 0.00 0.00 3.86
3336 5543 4.039124 CAGTTGGGAATTTGGCTAGTTTGT 59.961 41.667 0.00 0.00 0.00 2.83
3347 5554 1.204704 GCTAGTTTGTCCCCAAATGGC 59.795 52.381 0.00 0.00 42.26 4.40
3470 5677 1.196766 AGATGCTGCCACTCTGGACA 61.197 55.000 0.00 0.00 40.96 4.02
3539 5746 6.062095 CCCCCTTTTATACCACTTATGTCAG 58.938 44.000 0.00 0.00 0.00 3.51
3694 5901 9.656040 GACTAAGTAGAGTATCCATCTTATCGA 57.344 37.037 0.00 0.00 33.66 3.59
3783 5990 9.234827 TCTTGTGATGATTTCAATACTGTGATT 57.765 29.630 0.00 0.00 35.70 2.57
3794 6001 8.969121 TTCAATACTGTGATTATTTTGCTGTG 57.031 30.769 0.00 0.00 0.00 3.66
3795 6002 8.109705 TCAATACTGTGATTATTTTGCTGTGT 57.890 30.769 0.00 0.00 0.00 3.72
3841 6048 3.781079 TTTTGCTGTGTTCACAGGAAG 57.219 42.857 28.24 11.18 45.98 3.46
3938 6145 2.252976 TTCTTTTGGGGTGCAAATGC 57.747 45.000 0.00 0.00 42.50 3.56
3966 6173 4.899352 ATGCTCAGTCTAGTTCCAAACT 57.101 40.909 0.00 0.00 45.40 2.66
4016 6223 1.590932 CGCCTCCTTGATGAAGATGG 58.409 55.000 0.00 0.00 0.00 3.51
4026 6233 5.767168 CCTTGATGAAGATGGAAGGGATAAC 59.233 44.000 0.00 0.00 31.24 1.89
4124 6331 3.072915 TGATGAGAAAGTGGAAGAGGCAA 59.927 43.478 0.00 0.00 0.00 4.52
4141 6348 0.806868 CAATGTTGCCTGATGCTCGT 59.193 50.000 0.00 0.00 42.00 4.18
4143 6350 0.036105 ATGTTGCCTGATGCTCGTGA 60.036 50.000 0.00 0.00 42.00 4.35
4144 6351 0.671472 TGTTGCCTGATGCTCGTGAG 60.671 55.000 0.00 0.00 42.00 3.51
4145 6352 0.390340 GTTGCCTGATGCTCGTGAGA 60.390 55.000 0.00 0.00 42.00 3.27
4146 6353 0.321346 TTGCCTGATGCTCGTGAGAA 59.679 50.000 0.00 0.00 41.32 2.87
4197 6404 6.597832 AATAAAGATACAGGATCTCCGGAG 57.402 41.667 26.32 26.32 44.68 4.63
4198 6405 2.595750 AGATACAGGATCTCCGGAGG 57.404 55.000 30.80 16.75 41.37 4.30
4270 6477 4.141756 TGTGAAAATTGCACTTGGACCAAT 60.142 37.500 7.54 0.00 37.18 3.16
4315 6522 4.437524 GCGTATCTTCCTCCTTTCTTTTGC 60.438 45.833 0.00 0.00 0.00 3.68
4417 6624 2.623416 TGCTGAGGATATGTAGTGGACG 59.377 50.000 0.00 0.00 0.00 4.79
4459 6685 8.755028 TCTAGTTTGGTAATAGTGATTAGTGCA 58.245 33.333 0.00 0.00 0.00 4.57
4462 6688 7.883311 AGTTTGGTAATAGTGATTAGTGCAAGT 59.117 33.333 0.00 0.00 0.00 3.16
4616 6842 2.356382 CACTGTAAACGGCTTTTCACCA 59.644 45.455 0.00 0.00 0.00 4.17
4617 6843 3.018149 ACTGTAAACGGCTTTTCACCAA 58.982 40.909 0.00 0.00 0.00 3.67
4789 7274 7.340122 TCAGTGTCTTGAGATAACAGATAGG 57.660 40.000 0.00 0.00 0.00 2.57
4797 7282 8.981659 TCTTGAGATAACAGATAGGATGTCAAA 58.018 33.333 0.00 0.00 32.96 2.69
4802 7287 9.995003 AGATAACAGATAGGATGTCAAAGATTC 57.005 33.333 0.00 0.00 0.00 2.52
4811 7296 7.496346 AGGATGTCAAAGATTCTAGTTGGTA 57.504 36.000 0.00 0.00 0.00 3.25
4834 7319 2.582636 AGAACCTGAAGGGGTATGCAAT 59.417 45.455 0.56 0.00 38.87 3.56
4932 7417 7.130285 TCAGAGGAAGGGGGATCATAAATTTAA 59.870 37.037 1.21 0.00 0.00 1.52
4942 7427 6.256975 GGGATCATAAATTTAACCGCAAAACC 59.743 38.462 1.21 0.00 0.00 3.27
5019 7508 2.325761 AGTCGAACAAGTACGTGATGC 58.674 47.619 16.00 3.47 0.00 3.91
5295 7784 2.599597 CCCCAGGGATGCCAGAAG 59.400 66.667 7.25 0.00 37.50 2.85
5334 7824 0.457035 GGTGGTATGGCATGCTGTTG 59.543 55.000 18.92 0.00 0.00 3.33
5342 7832 5.163519 GGTATGGCATGCTGTTGTTCTTATT 60.164 40.000 18.92 0.00 0.00 1.40
5358 7848 2.317371 TATTGGGGCAGGCAAAAGAA 57.683 45.000 0.00 0.00 0.00 2.52
5427 7917 7.939588 AGTTTTGCCTGAGGATACCTATAAATC 59.060 37.037 0.65 0.00 31.76 2.17
5430 7920 6.032039 TGCCTGAGGATACCTATAAATCCAT 58.968 40.000 0.65 0.00 43.55 3.41
5454 7944 3.053693 TCCAAGACCTAAATCCACATGGG 60.054 47.826 0.00 0.00 35.41 4.00
5486 7976 4.703897 TCCAGTGTGGAAAGTCTAAACAG 58.296 43.478 0.00 0.00 45.00 3.16
5572 8062 4.096681 AGATATCCAGACTCCAACACACA 58.903 43.478 0.00 0.00 0.00 3.72
5579 8069 3.310774 CAGACTCCAACACACAGAAACAG 59.689 47.826 0.00 0.00 0.00 3.16
5586 8076 0.031178 CACACAGAAACAGCCTTGGC 59.969 55.000 2.97 2.97 0.00 4.52
5591 8081 0.321122 AGAAACAGCCTTGGCTCTCG 60.321 55.000 11.72 3.58 0.00 4.04
5618 8108 2.614829 ACTGTGCTGTCCGTAAGTTT 57.385 45.000 0.00 0.00 0.00 2.66
5647 8137 4.625028 AGCTTTGCTCCTTTTGTTTGATC 58.375 39.130 0.00 0.00 30.62 2.92
5648 8138 4.099881 AGCTTTGCTCCTTTTGTTTGATCA 59.900 37.500 0.00 0.00 30.62 2.92
5719 8214 3.415212 TGCTGAAGGATTAGCATATGCC 58.585 45.455 23.96 8.55 44.36 4.40
5767 8262 2.290323 GGAGTTGCTCCCATGTACTGTT 60.290 50.000 3.89 0.00 44.36 3.16
5780 8275 4.383850 TGTACTGTTTTGCTTTGCATGT 57.616 36.364 0.00 0.00 38.76 3.21
5792 8287 4.215399 TGCTTTGCATGTTAGTTGGTAGAC 59.785 41.667 0.00 0.00 31.71 2.59
5793 8288 4.455877 GCTTTGCATGTTAGTTGGTAGACT 59.544 41.667 0.00 0.00 0.00 3.24
5794 8289 5.642063 GCTTTGCATGTTAGTTGGTAGACTA 59.358 40.000 0.00 0.00 0.00 2.59
5795 8290 6.183360 GCTTTGCATGTTAGTTGGTAGACTAG 60.183 42.308 0.00 0.00 33.91 2.57
5796 8291 5.995565 TGCATGTTAGTTGGTAGACTAGT 57.004 39.130 0.00 0.00 33.91 2.57
5826 8328 0.107703 CATGTGGACTGGCCGTACAT 60.108 55.000 14.43 11.48 39.08 2.29
5928 8447 8.286097 TGTTTTGTTTTTCCATTCAACTTTCAC 58.714 29.630 0.00 0.00 0.00 3.18
6015 8544 5.725362 AGTTAGTATGTGGCTTCTCTGTTC 58.275 41.667 0.00 0.00 0.00 3.18
6016 8545 5.482175 AGTTAGTATGTGGCTTCTCTGTTCT 59.518 40.000 0.00 0.00 0.00 3.01
6017 8546 4.899352 AGTATGTGGCTTCTCTGTTCTT 57.101 40.909 0.00 0.00 0.00 2.52
6018 8547 4.826556 AGTATGTGGCTTCTCTGTTCTTC 58.173 43.478 0.00 0.00 0.00 2.87
6019 8548 3.777106 ATGTGGCTTCTCTGTTCTTCA 57.223 42.857 0.00 0.00 0.00 3.02
6041 8594 5.069119 TCAGAGAGAGCGATAAAATGCCTTA 59.931 40.000 0.00 0.00 0.00 2.69
6201 8754 6.169094 ACCAAGAGTTATCTGACTTCACATG 58.831 40.000 0.00 0.00 35.37 3.21
6207 8760 7.386299 AGAGTTATCTGACTTCACATGAACAAC 59.614 37.037 0.00 0.00 33.30 3.32
6520 9073 0.601558 AAAGCTTGACTGCCAGCATG 59.398 50.000 0.00 0.00 0.00 4.06
6534 9087 3.396560 CCAGCATGAAGATGAGCGATTA 58.603 45.455 0.00 0.00 39.69 1.75
6567 9120 3.321950 CCCTAGGAGAAGGAATCCATGT 58.678 50.000 11.48 0.00 39.15 3.21
6595 9148 6.183360 GGTTTTGAAAACAGAACAAGCAGAAG 60.183 38.462 20.87 0.00 0.00 2.85
6596 9149 5.895636 TTGAAAACAGAACAAGCAGAAGA 57.104 34.783 0.00 0.00 0.00 2.87
6597 9150 5.895636 TGAAAACAGAACAAGCAGAAGAA 57.104 34.783 0.00 0.00 0.00 2.52
6667 9220 0.098376 CGGAGTACTGAGTACGTGGC 59.902 60.000 16.30 7.96 43.05 5.01
6670 9223 1.401199 GAGTACTGAGTACGTGGCCTC 59.599 57.143 16.30 0.00 43.05 4.70
6711 9264 4.018870 TGTTATGTGTCCTTGGGCATCTTA 60.019 41.667 0.00 0.00 0.00 2.10
6793 9346 2.636893 AGTGACTGGACTTCTCATTGCT 59.363 45.455 0.00 0.00 0.00 3.91
6794 9347 2.999355 GTGACTGGACTTCTCATTGCTC 59.001 50.000 0.00 0.00 0.00 4.26
6797 9350 4.067896 GACTGGACTTCTCATTGCTCAAA 58.932 43.478 0.00 0.00 0.00 2.69
6803 9356 8.985315 TGGACTTCTCATTGCTCAAATATAAT 57.015 30.769 0.00 0.00 0.00 1.28
6872 9426 6.852853 CGTATATGATGGTCAAATGTCAAAGC 59.147 38.462 0.00 0.00 0.00 3.51
6878 9432 6.889177 TGATGGTCAAATGTCAAAGCCTAATA 59.111 34.615 0.00 0.00 0.00 0.98
6894 9448 8.622948 AAGCCTAATATGTTTAGGAAGTATGC 57.377 34.615 16.50 3.68 43.24 3.14
6895 9449 6.874134 AGCCTAATATGTTTAGGAAGTATGCG 59.126 38.462 16.50 0.00 43.24 4.73
6897 9451 7.148623 GCCTAATATGTTTAGGAAGTATGCGAC 60.149 40.741 16.50 0.00 43.24 5.19
6915 9474 2.097304 CGACCATCCGCATCATTCAAAA 59.903 45.455 0.00 0.00 0.00 2.44
6933 9492 3.663176 CCCTGGCGTGTGTGCAAG 61.663 66.667 0.00 0.00 35.57 4.01
6936 9495 1.569493 CTGGCGTGTGTGCAAGTAC 59.431 57.895 0.00 0.00 36.28 2.73
6958 9517 0.673437 TGATGCAGTGACTCGTGTGA 59.327 50.000 0.00 0.00 0.00 3.58
6959 9518 1.063806 GATGCAGTGACTCGTGTGAC 58.936 55.000 0.00 0.00 0.00 3.67
6960 9519 0.389025 ATGCAGTGACTCGTGTGACA 59.611 50.000 9.78 0.00 32.67 3.58
6961 9520 0.527600 TGCAGTGACTCGTGTGACAC 60.528 55.000 5.47 5.47 32.67 3.67
6962 9521 0.527600 GCAGTGACTCGTGTGACACA 60.528 55.000 16.74 3.56 35.66 3.72
6963 9522 1.869754 GCAGTGACTCGTGTGACACAT 60.870 52.381 16.74 0.00 35.66 3.21
6964 9523 2.473816 CAGTGACTCGTGTGACACATT 58.526 47.619 16.74 0.00 35.66 2.71
6965 9524 3.638484 CAGTGACTCGTGTGACACATTA 58.362 45.455 16.74 2.15 35.66 1.90
6966 9525 3.670523 CAGTGACTCGTGTGACACATTAG 59.329 47.826 16.74 13.98 35.66 1.73
6967 9526 2.408704 GTGACTCGTGTGACACATTAGC 59.591 50.000 16.74 8.91 33.40 3.09
6968 9527 2.035321 TGACTCGTGTGACACATTAGCA 59.965 45.455 16.74 11.01 33.40 3.49
6969 9528 3.057019 GACTCGTGTGACACATTAGCAA 58.943 45.455 16.74 0.00 33.40 3.91
6970 9529 3.664107 ACTCGTGTGACACATTAGCAAT 58.336 40.909 16.74 0.00 33.40 3.56
6971 9530 3.433274 ACTCGTGTGACACATTAGCAATG 59.567 43.478 16.74 7.16 44.48 2.82
6972 9531 2.159430 TCGTGTGACACATTAGCAATGC 59.841 45.455 16.74 0.00 42.69 3.56
6973 9532 2.160219 CGTGTGACACATTAGCAATGCT 59.840 45.455 16.74 13.92 42.69 3.79
6974 9533 3.495193 GTGTGACACATTAGCAATGCTG 58.505 45.455 19.25 4.55 42.69 4.41
6975 9534 4.214075 GTGTGACACATTAGCAATGCTGC 61.214 47.826 19.25 0.36 42.69 5.25
6983 9542 3.145551 GCAATGCTGCCCCCTCTG 61.146 66.667 0.00 0.00 43.26 3.35
6984 9543 2.357836 CAATGCTGCCCCCTCTGT 59.642 61.111 0.00 0.00 0.00 3.41
6985 9544 2.050350 CAATGCTGCCCCCTCTGTG 61.050 63.158 0.00 0.00 0.00 3.66
6986 9545 3.951769 AATGCTGCCCCCTCTGTGC 62.952 63.158 0.00 0.00 0.00 4.57
6988 9547 4.666253 GCTGCCCCCTCTGTGCAA 62.666 66.667 0.00 0.00 34.06 4.08
6989 9548 2.360852 CTGCCCCCTCTGTGCAAG 60.361 66.667 0.00 0.00 34.06 4.01
6990 9549 3.177884 TGCCCCCTCTGTGCAAGT 61.178 61.111 0.00 0.00 30.85 3.16
6991 9550 1.841302 CTGCCCCCTCTGTGCAAGTA 61.841 60.000 0.00 0.00 34.06 2.24
6992 9551 1.377333 GCCCCCTCTGTGCAAGTAC 60.377 63.158 0.00 0.00 0.00 2.73
6993 9552 2.066340 CCCCCTCTGTGCAAGTACA 58.934 57.895 0.00 0.00 0.00 2.90
6994 9553 0.321653 CCCCCTCTGTGCAAGTACAC 60.322 60.000 0.00 0.00 41.10 2.90
6995 9554 0.687354 CCCCTCTGTGCAAGTACACT 59.313 55.000 0.00 0.00 41.30 3.55
6996 9555 1.899814 CCCCTCTGTGCAAGTACACTA 59.100 52.381 0.00 0.00 41.30 2.74
6997 9556 2.353803 CCCCTCTGTGCAAGTACACTAC 60.354 54.545 0.00 0.00 41.30 2.73
6998 9557 2.563179 CCCTCTGTGCAAGTACACTACT 59.437 50.000 0.00 0.00 41.30 2.57
7000 9559 4.503296 CCCTCTGTGCAAGTACACTACTTT 60.503 45.833 0.00 0.00 46.27 2.66
7001 9560 5.057149 CCTCTGTGCAAGTACACTACTTTT 58.943 41.667 0.00 0.00 46.27 2.27
7002 9561 5.527582 CCTCTGTGCAAGTACACTACTTTTT 59.472 40.000 0.00 0.00 46.27 1.94
7003 9562 6.704493 CCTCTGTGCAAGTACACTACTTTTTA 59.296 38.462 0.00 0.00 46.27 1.52
7004 9563 7.225931 CCTCTGTGCAAGTACACTACTTTTTAA 59.774 37.037 0.00 0.00 46.27 1.52
7005 9564 8.138365 TCTGTGCAAGTACACTACTTTTTAAG 57.862 34.615 0.00 0.00 46.27 1.85
7006 9565 7.982919 TCTGTGCAAGTACACTACTTTTTAAGA 59.017 33.333 0.00 0.00 46.27 2.10
7007 9566 8.671384 TGTGCAAGTACACTACTTTTTAAGAT 57.329 30.769 0.00 0.00 46.27 2.40
7008 9567 9.116067 TGTGCAAGTACACTACTTTTTAAGATT 57.884 29.630 0.00 0.00 46.27 2.40
7009 9568 9.946165 GTGCAAGTACACTACTTTTTAAGATTT 57.054 29.630 0.00 0.00 46.27 2.17
7039 9598 9.791820 TGTGAATTACATATGAAGCAAAATGAG 57.208 29.630 10.38 0.00 33.42 2.90
7040 9599 9.793252 GTGAATTACATATGAAGCAAAATGAGT 57.207 29.630 10.38 0.00 0.00 3.41
7041 9600 9.791820 TGAATTACATATGAAGCAAAATGAGTG 57.208 29.630 10.38 0.00 0.00 3.51
7047 9606 9.715121 ACATATGAAGCAAAATGAGTGAATTTT 57.285 25.926 10.38 0.00 39.71 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
161 163 4.566360 GCAATTTTGTCACCCGGATAATTG 59.434 41.667 0.73 7.29 36.17 2.32
167 169 1.519751 CCGCAATTTTGTCACCCGGA 61.520 55.000 0.73 0.00 36.55 5.14
173 175 0.312416 CCGGTTCCGCAATTTTGTCA 59.688 50.000 5.66 0.00 0.00 3.58
194 196 9.309516 GATTTGACCGAGTGTAAACATCTATAA 57.690 33.333 0.00 0.00 0.00 0.98
260 262 8.445493 CAAAATTGGAATTCTTAGGATTGTTGC 58.555 33.333 5.23 0.00 0.00 4.17
291 293 4.171005 GCATCATTGAACCACATCACTTG 58.829 43.478 0.00 0.00 0.00 3.16
379 381 1.723542 GATGATATCTCCGCAGCAACG 59.276 52.381 3.98 0.00 0.00 4.10
411 413 6.016610 TCCTTAAACTGGAACTGAAAAATCCG 60.017 38.462 0.00 0.00 35.96 4.18
470 472 2.093341 GCAATTCAAATGACTGGGGCAT 60.093 45.455 0.00 0.00 0.00 4.40
483 485 3.951775 AATTTAGTGGGCGCAATTCAA 57.048 38.095 9.57 3.51 0.00 2.69
492 494 8.465273 AGTATTAATGGAGAAATTTAGTGGGC 57.535 34.615 0.00 0.00 0.00 5.36
524 526 5.407407 ACCGAGATAGTCAACATTGAACT 57.593 39.130 0.00 0.00 39.21 3.01
585 587 6.886459 ACAGCTAAGATCTAAATTTTCCAGCA 59.114 34.615 0.00 0.00 0.00 4.41
834 836 6.381481 TGCCAATGCATAAGTAGAAATGAG 57.619 37.500 0.00 0.00 44.23 2.90
879 881 6.131544 AGTAAAACAACTGTTGACCACATC 57.868 37.500 26.00 10.11 38.44 3.06
885 887 4.577283 TGGCCTAGTAAAACAACTGTTGAC 59.423 41.667 26.00 13.71 38.44 3.18
892 894 3.751698 CACCTCTGGCCTAGTAAAACAAC 59.248 47.826 3.32 0.00 0.00 3.32
901 903 2.569404 AGAAAAGTCACCTCTGGCCTAG 59.431 50.000 3.32 0.77 0.00 3.02
1187 1189 4.387550 CCTGGATATCCCGGATATGAGGTA 60.388 50.000 24.26 5.44 44.44 3.08
1207 1209 4.499696 GGAACAAATTGTTGACTCACCCTG 60.500 45.833 16.78 0.00 41.28 4.45
1208 1210 3.636764 GGAACAAATTGTTGACTCACCCT 59.363 43.478 16.78 0.00 41.28 4.34
1209 1211 3.550030 CGGAACAAATTGTTGACTCACCC 60.550 47.826 16.78 8.11 41.28 4.61
1210 1212 3.314080 TCGGAACAAATTGTTGACTCACC 59.686 43.478 16.78 8.80 41.28 4.02
1211 1213 4.545823 TCGGAACAAATTGTTGACTCAC 57.454 40.909 16.78 0.31 41.28 3.51
1212 1214 4.497340 GCTTCGGAACAAATTGTTGACTCA 60.497 41.667 16.78 0.00 41.28 3.41
1213 1215 3.975035 GCTTCGGAACAAATTGTTGACTC 59.025 43.478 16.78 1.40 41.28 3.36
1214 1216 3.380004 TGCTTCGGAACAAATTGTTGACT 59.620 39.130 16.78 0.00 41.28 3.41
1215 1217 3.485743 GTGCTTCGGAACAAATTGTTGAC 59.514 43.478 16.78 7.95 41.28 3.18
1216 1218 3.490078 GGTGCTTCGGAACAAATTGTTGA 60.490 43.478 16.78 5.46 41.28 3.18
1217 1219 2.794350 GGTGCTTCGGAACAAATTGTTG 59.206 45.455 16.78 2.97 41.28 3.33
1218 1220 2.693074 AGGTGCTTCGGAACAAATTGTT 59.307 40.909 11.55 11.55 44.37 2.83
1219 1221 2.306847 AGGTGCTTCGGAACAAATTGT 58.693 42.857 0.00 0.00 0.00 2.71
1220 1222 3.252215 TGTAGGTGCTTCGGAACAAATTG 59.748 43.478 0.00 0.00 0.00 2.32
1221 1223 3.482436 TGTAGGTGCTTCGGAACAAATT 58.518 40.909 0.00 0.00 0.00 1.82
1222 1224 3.134574 TGTAGGTGCTTCGGAACAAAT 57.865 42.857 0.00 0.00 0.00 2.32
1223 1225 2.623878 TGTAGGTGCTTCGGAACAAA 57.376 45.000 0.00 0.00 0.00 2.83
1224 1226 2.224426 ACATGTAGGTGCTTCGGAACAA 60.224 45.455 0.00 0.00 0.00 2.83
1225 1227 1.346395 ACATGTAGGTGCTTCGGAACA 59.654 47.619 0.00 0.00 0.00 3.18
1226 1228 1.732259 CACATGTAGGTGCTTCGGAAC 59.268 52.381 0.00 0.00 31.10 3.62
1227 1229 1.338674 CCACATGTAGGTGCTTCGGAA 60.339 52.381 0.00 0.00 37.46 4.30
1228 1230 0.249120 CCACATGTAGGTGCTTCGGA 59.751 55.000 0.00 0.00 37.46 4.55
1229 1231 0.036388 ACCACATGTAGGTGCTTCGG 60.036 55.000 16.20 5.53 38.13 4.30
1230 1232 2.165641 TCTACCACATGTAGGTGCTTCG 59.834 50.000 22.58 10.68 45.90 3.79
1231 1233 3.887621 TCTACCACATGTAGGTGCTTC 57.112 47.619 22.58 0.00 45.90 3.86
1232 1234 3.181475 CGATCTACCACATGTAGGTGCTT 60.181 47.826 22.58 11.40 45.90 3.91
1233 1235 2.362397 CGATCTACCACATGTAGGTGCT 59.638 50.000 22.58 11.54 45.90 4.40
1234 1236 2.100916 ACGATCTACCACATGTAGGTGC 59.899 50.000 22.58 12.29 45.90 5.01
1235 1237 4.386867 AACGATCTACCACATGTAGGTG 57.613 45.455 22.58 15.18 45.90 4.00
1236 1238 5.655532 AGTAAACGATCTACCACATGTAGGT 59.344 40.000 19.45 19.45 45.90 3.08
1237 1239 6.145338 AGTAAACGATCTACCACATGTAGG 57.855 41.667 0.00 5.37 45.90 3.18
1238 1240 8.186163 TGTTAGTAAACGATCTACCACATGTAG 58.814 37.037 0.00 0.00 42.11 2.74
1239 1241 8.054152 TGTTAGTAAACGATCTACCACATGTA 57.946 34.615 0.00 0.00 38.53 2.29
1240 1242 6.927416 TGTTAGTAAACGATCTACCACATGT 58.073 36.000 0.00 0.00 38.53 3.21
1241 1243 7.464178 GCTTGTTAGTAAACGATCTACCACATG 60.464 40.741 0.00 0.00 38.53 3.21
1242 1244 6.534079 GCTTGTTAGTAAACGATCTACCACAT 59.466 38.462 0.00 0.00 38.53 3.21
1243 1245 5.865552 GCTTGTTAGTAAACGATCTACCACA 59.134 40.000 0.00 0.00 38.53 4.17
1244 1246 5.865552 TGCTTGTTAGTAAACGATCTACCAC 59.134 40.000 0.00 0.00 38.53 4.16
1245 1247 6.028146 TGCTTGTTAGTAAACGATCTACCA 57.972 37.500 0.00 0.00 38.53 3.25
1246 1248 7.535489 AATGCTTGTTAGTAAACGATCTACC 57.465 36.000 0.00 0.00 38.53 3.18
1247 1249 9.897349 GTTAATGCTTGTTAGTAAACGATCTAC 57.103 33.333 0.00 0.00 38.53 2.59
1248 1250 9.865321 AGTTAATGCTTGTTAGTAAACGATCTA 57.135 29.630 0.00 0.00 38.53 1.98
1249 1251 8.656849 CAGTTAATGCTTGTTAGTAAACGATCT 58.343 33.333 0.00 0.00 38.53 2.75
1250 1252 8.807397 CAGTTAATGCTTGTTAGTAAACGATC 57.193 34.615 0.00 0.00 38.53 3.69
1274 1276 3.499461 TAGGCTGGGGCAAAACGCA 62.499 57.895 0.00 0.00 45.17 5.24
1275 1277 2.675075 TAGGCTGGGGCAAAACGC 60.675 61.111 0.00 0.00 40.87 4.84
1276 1278 1.303317 ACTAGGCTGGGGCAAAACG 60.303 57.895 2.02 0.00 40.87 3.60
1277 1279 1.877576 GCACTAGGCTGGGGCAAAAC 61.878 60.000 21.16 0.00 40.87 2.43
1278 1280 1.606313 GCACTAGGCTGGGGCAAAA 60.606 57.895 21.16 0.00 40.87 2.44
1279 1281 2.035626 GCACTAGGCTGGGGCAAA 59.964 61.111 21.16 0.00 40.87 3.68
1280 1282 4.047125 GGCACTAGGCTGGGGCAA 62.047 66.667 26.87 0.00 44.01 4.52
1296 1298 2.288886 GCCGTGCCTTAGGTAAGATAGG 60.289 54.545 3.72 0.00 35.33 2.57
1297 1299 2.628657 AGCCGTGCCTTAGGTAAGATAG 59.371 50.000 3.72 0.00 35.33 2.08
1298 1300 2.674420 AGCCGTGCCTTAGGTAAGATA 58.326 47.619 3.72 0.00 35.33 1.98
1299 1301 1.497161 AGCCGTGCCTTAGGTAAGAT 58.503 50.000 3.72 0.00 35.33 2.40
1300 1302 2.029623 CTAGCCGTGCCTTAGGTAAGA 58.970 52.381 3.72 0.00 35.33 2.10
1301 1303 1.755380 ACTAGCCGTGCCTTAGGTAAG 59.245 52.381 0.00 0.00 0.00 2.34
1302 1304 1.479323 CACTAGCCGTGCCTTAGGTAA 59.521 52.381 0.00 0.00 36.72 2.85
1303 1305 1.108776 CACTAGCCGTGCCTTAGGTA 58.891 55.000 0.00 0.00 36.72 3.08
1304 1306 1.898154 CACTAGCCGTGCCTTAGGT 59.102 57.895 0.00 0.00 36.72 3.08
1305 1307 4.835927 CACTAGCCGTGCCTTAGG 57.164 61.111 0.00 0.00 36.72 2.69
1313 1315 2.233922 AGCACTTAATCACACTAGCCGT 59.766 45.455 0.00 0.00 0.00 5.68
1314 1316 2.893637 AGCACTTAATCACACTAGCCG 58.106 47.619 0.00 0.00 0.00 5.52
1315 1317 4.372656 CCTAGCACTTAATCACACTAGCC 58.627 47.826 0.00 0.00 0.00 3.93
1316 1318 3.804873 GCCTAGCACTTAATCACACTAGC 59.195 47.826 0.00 0.00 0.00 3.42
1317 1319 5.011090 TGCCTAGCACTTAATCACACTAG 57.989 43.478 0.00 0.00 31.71 2.57
1318 1320 5.614324 ATGCCTAGCACTTAATCACACTA 57.386 39.130 0.00 0.00 43.04 2.74
1319 1321 3.981071 TGCCTAGCACTTAATCACACT 57.019 42.857 0.00 0.00 31.71 3.55
1320 1322 6.260936 ACATAATGCCTAGCACTTAATCACAC 59.739 38.462 0.00 0.00 43.04 3.82
1321 1323 6.356556 ACATAATGCCTAGCACTTAATCACA 58.643 36.000 0.00 0.00 43.04 3.58
1322 1324 6.867662 ACATAATGCCTAGCACTTAATCAC 57.132 37.500 0.00 0.00 43.04 3.06
1323 1325 6.238731 GCAACATAATGCCTAGCACTTAATCA 60.239 38.462 0.00 0.00 43.04 2.57
1324 1326 6.145535 GCAACATAATGCCTAGCACTTAATC 58.854 40.000 0.00 0.00 43.04 1.75
1325 1327 6.076981 GCAACATAATGCCTAGCACTTAAT 57.923 37.500 0.00 0.00 43.04 1.40
1326 1328 5.499139 GCAACATAATGCCTAGCACTTAA 57.501 39.130 0.00 0.00 43.04 1.85
1344 1346 2.582436 TAGGCGCTAGGTGGCAAC 59.418 61.111 7.64 0.00 41.13 4.17
1790 1792 0.541863 AACCCTTCAGAGCATACGGG 59.458 55.000 0.00 0.00 37.70 5.28
1927 1934 8.995220 TGTCACGTCAATTTATAGCTTTTTAGT 58.005 29.630 0.00 0.00 0.00 2.24
1928 1935 9.262472 GTGTCACGTCAATTTATAGCTTTTTAG 57.738 33.333 0.00 0.00 0.00 1.85
1967 1984 2.291282 TGGTTTGAGTGTGGGTTGTCTT 60.291 45.455 0.00 0.00 0.00 3.01
1968 1985 1.283613 TGGTTTGAGTGTGGGTTGTCT 59.716 47.619 0.00 0.00 0.00 3.41
2196 4373 9.290988 GATTGGTAGTCAGAACTATCTCTATGA 57.709 37.037 0.00 0.00 39.47 2.15
2206 4383 6.202954 CGTTTCTTTGATTGGTAGTCAGAACT 59.797 38.462 0.00 0.00 39.66 3.01
2403 4602 4.721776 TCTTCCTATGTTGACCATAAGGCT 59.278 41.667 0.00 0.00 35.62 4.58
2469 4668 2.814336 GGTTCAGTTGGTCTGGAACATC 59.186 50.000 0.00 0.00 39.13 3.06
2812 5018 2.191128 AGATGGTTGGAGTTGCAGTC 57.809 50.000 0.00 0.00 0.00 3.51
2854 5060 3.704061 TGATGGGTGATGATCGTAAGTCA 59.296 43.478 0.00 0.00 39.48 3.41
2857 5063 3.393800 GGTGATGGGTGATGATCGTAAG 58.606 50.000 0.00 0.00 0.00 2.34
2953 5159 1.183549 TAGCGGTGGAGAAGAGAACC 58.816 55.000 0.00 0.00 0.00 3.62
2968 5175 4.627467 GCATAACACCCAGAGATTATAGCG 59.373 45.833 0.00 0.00 0.00 4.26
3011 5218 0.252057 AACTTATGGTTGGGCCCCAC 60.252 55.000 22.27 19.92 36.70 4.61
3043 5250 0.456628 GAGCTTGGAGGTCTCGGTAC 59.543 60.000 0.00 0.00 39.50 3.34
3057 5264 1.620323 GTTTGCCAATCCAAGGAGCTT 59.380 47.619 0.00 0.00 0.00 3.74
3106 5313 4.583871 AGAGGAAGTTAAGAGGCAACATG 58.416 43.478 0.00 0.00 41.41 3.21
3148 5355 4.631377 GGCTTTGAGGGCAATTGATAAAAC 59.369 41.667 10.34 0.00 33.25 2.43
3190 5397 3.655276 ATCAAAAGCCAGCACTTCTTG 57.345 42.857 0.00 0.00 0.00 3.02
3556 5763 1.183549 AGGCTGGTACCAAGACTACG 58.816 55.000 17.11 3.21 0.00 3.51
3783 5990 5.940192 CTGTACAAGGACACAGCAAAATA 57.060 39.130 0.00 0.00 36.09 1.40
3784 5991 4.836125 CTGTACAAGGACACAGCAAAAT 57.164 40.909 0.00 0.00 36.09 1.82
3841 6048 6.560253 TTAGTCTTCTTGCAGAAATGGAAC 57.440 37.500 0.00 0.00 33.19 3.62
3938 6145 4.629200 GGAACTAGACTGAGCATTTGACAG 59.371 45.833 0.00 0.00 37.62 3.51
4016 6223 4.569719 TCTTCCCACTTGTTATCCCTTC 57.430 45.455 0.00 0.00 0.00 3.46
4026 6233 4.357918 TTCTTCCTCTTCTTCCCACTTG 57.642 45.455 0.00 0.00 0.00 3.16
4141 6348 9.587772 CGAATAGGAGTAAATTTCTTCTTCTCA 57.412 33.333 0.00 0.00 0.00 3.27
4143 6350 8.041323 TGCGAATAGGAGTAAATTTCTTCTTCT 58.959 33.333 0.00 0.00 0.00 2.85
4144 6351 8.197988 TGCGAATAGGAGTAAATTTCTTCTTC 57.802 34.615 0.00 0.00 0.00 2.87
4145 6352 7.281100 CCTGCGAATAGGAGTAAATTTCTTCTT 59.719 37.037 0.00 0.00 40.42 2.52
4146 6353 6.763610 CCTGCGAATAGGAGTAAATTTCTTCT 59.236 38.462 0.00 0.00 40.42 2.85
4197 6404 2.573915 TGGGTCCCCAATTTAATTTGCC 59.426 45.455 5.13 1.63 44.12 4.52
4198 6405 3.990959 TGGGTCCCCAATTTAATTTGC 57.009 42.857 5.13 0.00 44.12 3.68
4218 6425 3.167485 TCCTTGGCATCAAATCTGCTTT 58.833 40.909 0.00 0.00 39.60 3.51
4225 6432 2.905415 TCCACTCCTTGGCATCAAAT 57.095 45.000 0.00 0.00 46.47 2.32
4244 6451 4.815846 GGTCCAAGTGCAATTTTCACAAAT 59.184 37.500 0.00 0.00 36.93 2.32
4270 6477 4.141959 GCAATTAAATGCTTCTGGGGCTTA 60.142 41.667 8.29 0.00 43.06 3.09
4315 6522 9.734620 TTAAGAAGATCATATTGGCAATTTTCG 57.265 29.630 19.21 4.91 0.00 3.46
4417 6624 8.135529 ACCAAACTAGAAATTACAGAAAACTGC 58.864 33.333 0.00 0.00 0.00 4.40
4439 6665 9.378551 CTTACTTGCACTAATCACTATTACCAA 57.621 33.333 0.00 0.00 0.00 3.67
4583 6809 3.436704 CGTTTACAGTGACATCAGCCATT 59.563 43.478 0.00 0.00 0.00 3.16
4616 6842 6.138263 TCCTTGATCCTTGATATTGCCAATT 58.862 36.000 0.00 0.00 0.00 2.32
4617 6843 5.708544 TCCTTGATCCTTGATATTGCCAAT 58.291 37.500 0.00 0.00 0.00 3.16
4658 6884 7.977853 AGAACATAAATCAGACAAATGCAATCC 59.022 33.333 0.00 0.00 0.00 3.01
4694 6920 4.820284 AGCAAACTAGAAGCAAACAGTC 57.180 40.909 0.00 0.00 0.00 3.51
4751 6977 6.204688 TCAAGACACTGATTGGTTGAATACAC 59.795 38.462 0.00 0.00 32.20 2.90
4789 7274 9.436957 TCTTTACCAACTAGAATCTTTGACATC 57.563 33.333 0.00 0.00 0.00 3.06
4811 7296 2.378547 TGCATACCCCTTCAGGTTCTTT 59.621 45.455 0.00 0.00 41.58 2.52
4834 7319 5.772393 TTGTAGAAAGAATAGGCCCTTCA 57.228 39.130 15.88 0.00 0.00 3.02
4932 7417 2.680577 CTACGACTAAGGTTTTGCGGT 58.319 47.619 0.00 0.00 0.00 5.68
4942 7427 4.201724 GCAACCTCAAATGCTACGACTAAG 60.202 45.833 0.00 0.00 39.46 2.18
5019 7508 5.514914 ACATGTAAAACAAGCAACAAGAACG 59.485 36.000 0.00 0.00 0.00 3.95
5026 7515 5.810074 AGACCAAACATGTAAAACAAGCAAC 59.190 36.000 0.00 0.00 0.00 4.17
5128 7617 2.736670 AGCTTTGACAGTCCTTGGTT 57.263 45.000 0.00 0.00 0.00 3.67
5334 7824 1.555967 TTGCCTGCCCCAATAAGAAC 58.444 50.000 0.00 0.00 0.00 3.01
5342 7832 0.105760 TTCTTCTTTTGCCTGCCCCA 60.106 50.000 0.00 0.00 0.00 4.96
5384 7874 6.427974 GCAAAACTTAACACCTAGTGAGTTC 58.572 40.000 0.96 0.00 36.80 3.01
5427 7917 4.080356 TGTGGATTTAGGTCTTGGAGATGG 60.080 45.833 0.00 0.00 0.00 3.51
5430 7920 4.080356 CCATGTGGATTTAGGTCTTGGAGA 60.080 45.833 0.00 0.00 37.39 3.71
5454 7944 0.035458 CCACACTGGACTCCTCCAAC 59.965 60.000 0.00 0.00 46.63 3.77
5468 7958 5.503520 CGGAAACTGTTTAGACTTTCCACAC 60.504 44.000 5.64 0.00 38.81 3.82
5492 7982 1.557099 GAACCTTCCCAAATCCACCC 58.443 55.000 0.00 0.00 0.00 4.61
5579 8069 3.939592 AGTAATTAAACGAGAGCCAAGGC 59.060 43.478 2.02 2.02 42.33 4.35
5586 8076 5.062308 GGACAGCACAGTAATTAAACGAGAG 59.938 44.000 0.00 0.00 0.00 3.20
5591 8081 6.146673 ACTTACGGACAGCACAGTAATTAAAC 59.853 38.462 0.00 0.00 32.27 2.01
5647 8137 7.630242 AGTATCACACAAGGAAACCAATATG 57.370 36.000 0.00 0.00 0.00 1.78
5648 8138 7.888021 TGAAGTATCACACAAGGAAACCAATAT 59.112 33.333 0.00 0.00 0.00 1.28
5700 8195 4.025040 TGGGCATATGCTAATCCTTCAG 57.975 45.455 26.12 0.00 41.70 3.02
5760 8255 5.977129 ACTAACATGCAAAGCAAAACAGTAC 59.023 36.000 0.00 0.00 43.62 2.73
5767 8262 4.399004 ACCAACTAACATGCAAAGCAAA 57.601 36.364 0.00 0.00 43.62 3.68
5780 8275 7.822161 TGTGTAACACTAGTCTACCAACTAA 57.178 36.000 0.00 0.00 45.67 2.24
5871 8389 5.653255 ATATGGGCTTCTTATTCTGGTGT 57.347 39.130 0.00 0.00 0.00 4.16
5916 8435 5.916318 TCATGCCAAAAGTGAAAGTTGAAT 58.084 33.333 0.00 0.00 0.00 2.57
5925 8444 7.930325 TCAAAATTACATTCATGCCAAAAGTGA 59.070 29.630 0.00 0.00 0.00 3.41
5928 8447 8.557864 TGTTCAAAATTACATTCATGCCAAAAG 58.442 29.630 0.00 0.00 0.00 2.27
5999 8528 3.777106 TGAAGAACAGAGAAGCCACAT 57.223 42.857 0.00 0.00 0.00 3.21
6015 8544 4.210955 GGCATTTTATCGCTCTCTCTGAAG 59.789 45.833 0.00 0.00 0.00 3.02
6016 8545 4.122776 GGCATTTTATCGCTCTCTCTGAA 58.877 43.478 0.00 0.00 0.00 3.02
6017 8546 3.386078 AGGCATTTTATCGCTCTCTCTGA 59.614 43.478 0.00 0.00 0.00 3.27
6018 8547 3.726607 AGGCATTTTATCGCTCTCTCTG 58.273 45.455 0.00 0.00 0.00 3.35
6019 8548 4.414337 AAGGCATTTTATCGCTCTCTCT 57.586 40.909 0.00 0.00 0.00 3.10
6041 8594 9.200817 AGCCAAAATACACTACCAAAATCATAT 57.799 29.630 0.00 0.00 0.00 1.78
6193 8746 3.713858 TTGCTGGTTGTTCATGTGAAG 57.286 42.857 0.00 0.00 34.27 3.02
6201 8754 5.050091 CGGATACAGATATTGCTGGTTGTTC 60.050 44.000 0.00 0.00 40.20 3.18
6207 8760 3.854666 CCTCGGATACAGATATTGCTGG 58.145 50.000 0.00 0.00 40.20 4.85
6319 8872 6.928492 TCTGGAACAAGGCAAAATGATTTTAC 59.072 34.615 2.42 0.00 38.70 2.01
6358 8911 5.771469 TCATAAACATTGAACAGCTGTTGG 58.229 37.500 35.67 22.40 38.56 3.77
6446 8999 3.495806 GCCCCACCATTTCATCAAAACAA 60.496 43.478 0.00 0.00 0.00 2.83
6511 9064 1.093496 CGCTCATCTTCATGCTGGCA 61.093 55.000 0.00 0.00 0.00 4.92
6520 9073 4.545610 CTCTGAGGTAATCGCTCATCTTC 58.454 47.826 0.00 0.00 0.00 2.87
6534 9087 1.382420 CCTAGGGCTGCTCTGAGGT 60.382 63.158 13.40 0.00 0.00 3.85
6567 9120 5.167845 GCTTGTTCTGTTTTCAAAACCAGA 58.832 37.500 10.56 10.05 28.69 3.86
6610 9163 5.424121 ACAATCAAGCAACAAGACTGTAC 57.576 39.130 0.00 0.00 33.45 2.90
6667 9220 7.721286 AACAAGCATTCGAGAATTATAGAGG 57.279 36.000 0.00 0.00 0.00 3.69
6670 9223 9.803130 CACATAACAAGCATTCGAGAATTATAG 57.197 33.333 0.00 0.00 0.00 1.31
6711 9264 4.928661 GCTCGACGCCATATCAAATATT 57.071 40.909 0.00 0.00 0.00 1.28
6814 9367 4.909696 CGTGAGATCTCAGGTAAGACAT 57.090 45.455 29.10 0.00 40.75 3.06
6872 9426 7.331193 GGTCGCATACTTCCTAAACATATTAGG 59.669 40.741 7.75 7.75 42.21 2.69
6878 9432 4.481368 TGGTCGCATACTTCCTAAACAT 57.519 40.909 0.00 0.00 0.00 2.71
6894 9448 1.298602 TTGAATGATGCGGATGGTCG 58.701 50.000 0.00 0.00 0.00 4.79
6895 9449 3.438360 GTTTTGAATGATGCGGATGGTC 58.562 45.455 0.00 0.00 0.00 4.02
6897 9451 2.481795 GGGTTTTGAATGATGCGGATGG 60.482 50.000 0.00 0.00 0.00 3.51
6915 9474 4.497984 TTGCACACACGCCAGGGT 62.498 61.111 0.00 0.00 0.00 4.34
6940 9499 1.063806 GTCACACGAGTCACTGCATC 58.936 55.000 0.00 0.00 0.00 3.91
6967 9526 2.050350 CACAGAGGGGGCAGCATTG 61.050 63.158 0.00 0.00 0.00 2.82
6968 9527 2.357836 CACAGAGGGGGCAGCATT 59.642 61.111 0.00 0.00 0.00 3.56
6969 9528 4.437587 GCACAGAGGGGGCAGCAT 62.438 66.667 0.00 0.00 0.00 3.79
6971 9530 4.666253 TTGCACAGAGGGGGCAGC 62.666 66.667 0.00 0.00 38.97 5.25
6972 9531 1.841302 TACTTGCACAGAGGGGGCAG 61.841 60.000 0.00 0.00 38.97 4.85
6973 9532 1.845664 TACTTGCACAGAGGGGGCA 60.846 57.895 0.00 0.00 35.41 5.36
6974 9533 1.377333 GTACTTGCACAGAGGGGGC 60.377 63.158 0.00 0.00 0.00 5.80
6975 9534 0.321653 GTGTACTTGCACAGAGGGGG 60.322 60.000 0.00 0.00 39.07 5.40
6976 9535 0.687354 AGTGTACTTGCACAGAGGGG 59.313 55.000 0.14 0.00 41.52 4.79
6977 9536 2.563179 AGTAGTGTACTTGCACAGAGGG 59.437 50.000 0.14 0.00 41.52 4.30
6978 9537 3.944055 AGTAGTGTACTTGCACAGAGG 57.056 47.619 0.14 0.00 41.52 3.69
7013 9572 9.791820 CTCATTTTGCTTCATATGTAATTCACA 57.208 29.630 1.90 0.00 42.69 3.58
7014 9573 9.793252 ACTCATTTTGCTTCATATGTAATTCAC 57.207 29.630 1.90 0.00 0.00 3.18
7015 9574 9.791820 CACTCATTTTGCTTCATATGTAATTCA 57.208 29.630 1.90 0.00 0.00 2.57
7021 9580 9.715121 AAAATTCACTCATTTTGCTTCATATGT 57.285 25.926 1.90 0.00 35.45 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.