Multiple sequence alignment - TraesCS7A01G467400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G467400 chr7A 100.000 2525 0 0 1 2525 663751634 663749110 0.000000e+00 4663.0
1 TraesCS7A01G467400 chr7A 86.815 766 48 20 777 1518 632265791 632266527 0.000000e+00 806.0
2 TraesCS7A01G467400 chr7A 85.566 769 64 15 783 1516 631872522 631871766 0.000000e+00 761.0
3 TraesCS7A01G467400 chr7A 85.794 718 49 20 836 1518 632188101 632188800 0.000000e+00 712.0
4 TraesCS7A01G467400 chr7A 85.735 694 47 21 841 1518 617551876 617551219 0.000000e+00 686.0
5 TraesCS7A01G467400 chr7A 84.571 700 58 24 841 1518 631652395 631651724 0.000000e+00 649.0
6 TraesCS7A01G467400 chr7A 83.162 487 46 14 1519 1992 632266563 632267026 1.810000e-111 412.0
7 TraesCS7A01G467400 chr7A 90.909 209 16 1 1521 1729 169953901 169953696 6.880000e-71 278.0
8 TraesCS7A01G467400 chr7A 98.246 57 1 0 571 627 632265403 632265459 1.600000e-17 100.0
9 TraesCS7A01G467400 chr7A 96.491 57 2 0 711 767 663574596 663574652 7.440000e-16 95.3
10 TraesCS7A01G467400 chr7A 86.765 68 2 3 567 627 632187542 632187609 4.510000e-08 69.4
11 TraesCS7A01G467400 chr7A 90.698 43 4 0 2092 2134 630622993 630623035 9.760000e-05 58.4
12 TraesCS7A01G467400 chr7B 85.846 1300 64 26 764 1997 633001060 633002305 0.000000e+00 1271.0
13 TraesCS7A01G467400 chr7B 87.565 772 60 21 764 1518 632800626 632799874 0.000000e+00 861.0
14 TraesCS7A01G467400 chr7B 80.917 1221 110 58 800 1949 569481658 569480490 0.000000e+00 850.0
15 TraesCS7A01G467400 chr7B 82.851 1003 91 37 800 1751 569439782 569438810 0.000000e+00 824.0
16 TraesCS7A01G467400 chr7B 98.853 436 5 0 2 437 178408298 178407863 0.000000e+00 778.0
17 TraesCS7A01G467400 chr7B 87.358 704 50 12 838 1518 591566145 591566832 0.000000e+00 771.0
18 TraesCS7A01G467400 chr7B 86.629 703 52 18 838 1518 591599859 591600541 0.000000e+00 739.0
19 TraesCS7A01G467400 chr7B 86.344 703 54 18 838 1518 591684376 591685058 0.000000e+00 728.0
20 TraesCS7A01G467400 chr7B 90.269 483 27 5 1519 1997 632799838 632799372 4.620000e-172 614.0
21 TraesCS7A01G467400 chr7B 84.021 388 38 11 1519 1903 591685094 591685460 4.000000e-93 351.0
22 TraesCS7A01G467400 chr7B 85.494 324 35 6 1519 1838 591566868 591567183 6.730000e-86 327.0
23 TraesCS7A01G467400 chr7B 87.931 58 5 2 488 545 632801197 632801142 1.620000e-07 67.6
24 TraesCS7A01G467400 chr7B 88.679 53 4 2 2092 2142 569480126 569480074 2.100000e-06 63.9
25 TraesCS7A01G467400 chr7B 88.679 53 4 2 2092 2142 591055420 591055368 2.100000e-06 63.9
26 TraesCS7A01G467400 chr7D 88.836 1048 53 29 764 1757 573969131 573970168 0.000000e+00 1229.0
27 TraesCS7A01G467400 chr7D 84.546 1003 82 36 800 1752 530430732 530429753 0.000000e+00 926.0
28 TraesCS7A01G467400 chr7D 82.540 1008 85 37 800 1751 530361639 530360667 0.000000e+00 802.0
29 TraesCS7A01G467400 chr7D 86.536 713 50 16 836 1515 548560804 548561503 0.000000e+00 743.0
30 TraesCS7A01G467400 chr7D 95.312 448 18 3 1 447 548560024 548560469 0.000000e+00 708.0
31 TraesCS7A01G467400 chr7D 84.284 719 47 17 841 1518 548325000 548325693 2.120000e-180 641.0
32 TraesCS7A01G467400 chr7D 90.686 204 16 1 1519 1722 548561542 548561742 4.140000e-68 268.0
33 TraesCS7A01G467400 chr7D 82.008 239 24 10 1756 1992 548561745 548561966 4.290000e-43 185.0
34 TraesCS7A01G467400 chr7D 93.966 116 5 2 1882 1997 573970219 573970332 9.280000e-40 174.0
35 TraesCS7A01G467400 chr7D 93.548 93 6 0 1989 2081 573970605 573970697 3.390000e-29 139.0
36 TraesCS7A01G467400 chr7D 93.548 93 6 0 1989 2081 574248233 574248325 3.390000e-29 139.0
37 TraesCS7A01G467400 chr7D 94.203 69 4 0 2064 2132 573970713 573970781 3.440000e-19 106.0
38 TraesCS7A01G467400 chr7D 94.203 69 4 0 2064 2132 574248341 574248409 3.440000e-19 106.0
39 TraesCS7A01G467400 chr7D 87.342 79 10 0 1989 2067 548093412 548093334 9.620000e-15 91.6
40 TraesCS7A01G467400 chr7D 94.737 57 3 0 711 767 573968836 573968892 3.460000e-14 89.8
41 TraesCS7A01G467400 chr7D 97.872 47 1 0 1785 1831 573970166 573970212 5.790000e-12 82.4
42 TraesCS7A01G467400 chr7D 93.023 43 3 0 2092 2134 548065273 548065231 2.100000e-06 63.9
43 TraesCS7A01G467400 chr7D 83.333 72 4 6 749 819 548560738 548560802 2.710000e-05 60.2
44 TraesCS7A01G467400 chr4A 98.856 437 5 0 1 437 373805448 373805884 0.000000e+00 780.0
45 TraesCS7A01G467400 chr4A 98.856 437 5 0 1 437 606355838 606356274 0.000000e+00 780.0
46 TraesCS7A01G467400 chr4A 78.306 484 61 20 1519 1992 141903703 141903254 3.200000e-69 272.0
47 TraesCS7A01G467400 chr4A 80.420 143 19 3 569 708 41969891 41969755 1.600000e-17 100.0
48 TraesCS7A01G467400 chrUn 87.447 701 49 12 841 1518 355335270 355334586 0.000000e+00 771.0
49 TraesCS7A01G467400 chrUn 86.429 700 53 18 841 1518 337590797 337590118 0.000000e+00 728.0
50 TraesCS7A01G467400 chrUn 84.067 477 49 10 1522 1992 337590079 337589624 3.860000e-118 435.0
51 TraesCS7A01G467400 chrUn 85.494 324 35 6 1519 1838 355334550 355334235 6.730000e-86 327.0
52 TraesCS7A01G467400 chr2B 97.941 437 9 0 1 437 345451670 345451234 0.000000e+00 758.0
53 TraesCS7A01G467400 chr2B 81.119 143 18 3 569 708 113273246 113273110 3.440000e-19 106.0
54 TraesCS7A01G467400 chr2B 80.420 143 19 3 569 708 678387079 678386943 1.600000e-17 100.0
55 TraesCS7A01G467400 chr1B 94.118 459 10 4 1 443 258837702 258838159 0.000000e+00 682.0
56 TraesCS7A01G467400 chr1B 97.059 34 1 0 2471 2504 407798870 407798837 9.760000e-05 58.4
57 TraesCS7A01G467400 chr6B 92.237 438 30 4 1 437 60484514 60484080 3.570000e-173 617.0
58 TraesCS7A01G467400 chr3A 91.610 441 35 2 1 440 341605700 341606139 2.150000e-170 608.0
59 TraesCS7A01G467400 chr3A 94.595 37 1 1 2465 2500 742585573 742585537 3.510000e-04 56.5
60 TraesCS7A01G467400 chr5D 88.024 334 37 3 2135 2468 373723935 373724265 2.350000e-105 392.0
61 TraesCS7A01G467400 chr5D 87.537 337 37 2 2135 2468 370798631 370798297 3.940000e-103 385.0
62 TraesCS7A01G467400 chr5D 100.000 34 0 0 2471 2504 419488376 419488409 2.100000e-06 63.9
63 TraesCS7A01G467400 chr1D 87.425 334 39 2 2135 2468 91474438 91474108 5.100000e-102 381.0
64 TraesCS7A01G467400 chr1D 92.500 80 3 2 467 545 468171539 468171462 7.380000e-21 111.0
65 TraesCS7A01G467400 chr1D 97.059 34 1 0 2471 2504 495184434 495184467 9.760000e-05 58.4
66 TraesCS7A01G467400 chr1A 87.349 332 41 1 2135 2466 305094502 305094832 1.830000e-101 379.0
67 TraesCS7A01G467400 chr5A 86.866 335 42 1 2134 2468 593613419 593613087 8.530000e-100 374.0
68 TraesCS7A01G467400 chr3D 88.462 312 32 4 2156 2466 344522258 344522566 8.530000e-100 374.0
69 TraesCS7A01G467400 chr3D 90.164 61 0 4 2471 2525 249876019 249876079 9.690000e-10 75.0
70 TraesCS7A01G467400 chr3D 88.525 61 1 4 2471 2525 249463445 249463505 4.510000e-08 69.4
71 TraesCS7A01G467400 chr6D 83.178 428 48 19 1 414 272798574 272798991 1.100000e-98 370.0
72 TraesCS7A01G467400 chr6D 92.208 77 6 0 365 441 167261632 167261556 2.660000e-20 110.0
73 TraesCS7A01G467400 chr6A 86.145 332 44 1 2135 2466 550261448 550261777 8.590000e-95 357.0
74 TraesCS7A01G467400 chr2D 85.970 335 42 3 2135 2468 53691234 53690904 1.110000e-93 353.0
75 TraesCS7A01G467400 chr4D 85.970 335 40 5 2134 2468 33276570 33276243 4.000000e-93 351.0
76 TraesCS7A01G467400 chr3B 79.592 147 21 6 569 712 59891933 59891793 2.070000e-16 97.1
77 TraesCS7A01G467400 chr3B 97.059 34 1 0 2471 2504 739394606 739394573 9.760000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G467400 chr7A 663749110 663751634 2524 True 4663.000000 4663 100.000000 1 2525 1 chr7A.!!$R5 2524
1 TraesCS7A01G467400 chr7A 631871766 631872522 756 True 761.000000 761 85.566000 783 1516 1 chr7A.!!$R4 733
2 TraesCS7A01G467400 chr7A 617551219 617551876 657 True 686.000000 686 85.735000 841 1518 1 chr7A.!!$R2 677
3 TraesCS7A01G467400 chr7A 631651724 631652395 671 True 649.000000 649 84.571000 841 1518 1 chr7A.!!$R3 677
4 TraesCS7A01G467400 chr7A 632265403 632267026 1623 False 439.333333 806 89.407667 571 1992 3 chr7A.!!$F4 1421
5 TraesCS7A01G467400 chr7A 632187542 632188800 1258 False 390.700000 712 86.279500 567 1518 2 chr7A.!!$F3 951
6 TraesCS7A01G467400 chr7B 633001060 633002305 1245 False 1271.000000 1271 85.846000 764 1997 1 chr7B.!!$F2 1233
7 TraesCS7A01G467400 chr7B 569438810 569439782 972 True 824.000000 824 82.851000 800 1751 1 chr7B.!!$R2 951
8 TraesCS7A01G467400 chr7B 591599859 591600541 682 False 739.000000 739 86.629000 838 1518 1 chr7B.!!$F1 680
9 TraesCS7A01G467400 chr7B 591566145 591567183 1038 False 549.000000 771 86.426000 838 1838 2 chr7B.!!$F3 1000
10 TraesCS7A01G467400 chr7B 591684376 591685460 1084 False 539.500000 728 85.182500 838 1903 2 chr7B.!!$F4 1065
11 TraesCS7A01G467400 chr7B 632799372 632801197 1825 True 514.200000 861 88.588333 488 1997 3 chr7B.!!$R5 1509
12 TraesCS7A01G467400 chr7B 569480074 569481658 1584 True 456.950000 850 84.798000 800 2142 2 chr7B.!!$R4 1342
13 TraesCS7A01G467400 chr7D 530429753 530430732 979 True 926.000000 926 84.546000 800 1752 1 chr7D.!!$R2 952
14 TraesCS7A01G467400 chr7D 530360667 530361639 972 True 802.000000 802 82.540000 800 1751 1 chr7D.!!$R1 951
15 TraesCS7A01G467400 chr7D 548325000 548325693 693 False 641.000000 641 84.284000 841 1518 1 chr7D.!!$F1 677
16 TraesCS7A01G467400 chr7D 548560024 548561966 1942 False 392.840000 743 87.575000 1 1992 5 chr7D.!!$F2 1991
17 TraesCS7A01G467400 chr7D 573968836 573970781 1945 False 303.366667 1229 93.860333 711 2132 6 chr7D.!!$F3 1421
18 TraesCS7A01G467400 chrUn 337589624 337590797 1173 True 581.500000 728 85.248000 841 1992 2 chrUn.!!$R1 1151
19 TraesCS7A01G467400 chrUn 355334235 355335270 1035 True 549.000000 771 86.470500 841 1838 2 chrUn.!!$R2 997

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
440 442 0.179009 CCGGACGGAGGGAGTACATA 60.179 60.0 4.4 0.0 37.5 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2273 3571 0.039437 TTTCGAGAAAGAGCGCGACT 60.039 50.0 12.1 6.51 39.69 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
138 139 2.484062 GGAAGGACGCCGTCGGATA 61.484 63.158 17.49 0.00 40.69 2.59
182 184 2.874694 CTCGCCGTGATTCGCCATG 61.875 63.158 0.00 0.00 38.35 3.66
211 213 1.758906 GAGAGGAACGAGGAGGGGG 60.759 68.421 0.00 0.00 0.00 5.40
298 300 1.001503 AGAGGAGGTGAGCTCTGGG 59.998 63.158 16.19 0.00 0.00 4.45
388 390 1.612442 CGGAGGAAAGGGGAGGTGA 60.612 63.158 0.00 0.00 0.00 4.02
405 407 3.004315 AGGTGATTTTCGCAAAATGTCGT 59.996 39.130 10.33 4.42 40.97 4.34
425 427 1.348366 TCGGAGACAATTTTTCCCGGA 59.652 47.619 0.73 0.00 37.72 5.14
440 442 0.179009 CCGGACGGAGGGAGTACATA 60.179 60.000 4.40 0.00 37.50 2.29
442 444 1.476471 CGGACGGAGGGAGTACATACT 60.476 57.143 0.00 0.00 39.71 2.12
447 449 2.553172 CGGAGGGAGTACATACTAGCAC 59.447 54.545 0.00 0.00 36.50 4.40
448 450 3.563223 GGAGGGAGTACATACTAGCACA 58.437 50.000 0.00 0.00 36.50 4.57
449 451 3.570550 GGAGGGAGTACATACTAGCACAG 59.429 52.174 0.00 0.00 36.50 3.66
450 452 2.959707 AGGGAGTACATACTAGCACAGC 59.040 50.000 0.00 0.00 36.50 4.40
451 453 2.693591 GGGAGTACATACTAGCACAGCA 59.306 50.000 0.00 0.00 36.50 4.41
452 454 3.491104 GGGAGTACATACTAGCACAGCAC 60.491 52.174 0.00 0.00 36.50 4.40
453 455 3.364062 GAGTACATACTAGCACAGCACG 58.636 50.000 0.00 0.00 36.50 5.34
454 456 2.753452 AGTACATACTAGCACAGCACGT 59.247 45.455 0.00 0.00 34.13 4.49
455 457 3.427638 AGTACATACTAGCACAGCACGTG 60.428 47.826 12.28 12.28 40.85 4.49
456 458 1.280982 CATACTAGCACAGCACGTGG 58.719 55.000 18.88 3.72 46.45 4.94
463 465 1.963747 GCACAGCACGTGGTAAAATC 58.036 50.000 21.41 4.55 46.45 2.17
464 466 1.535462 GCACAGCACGTGGTAAAATCT 59.465 47.619 21.41 1.39 46.45 2.40
465 467 2.739913 GCACAGCACGTGGTAAAATCTA 59.260 45.455 21.41 0.00 46.45 1.98
466 468 3.187637 GCACAGCACGTGGTAAAATCTAA 59.812 43.478 21.41 0.00 46.45 2.10
467 469 4.319911 GCACAGCACGTGGTAAAATCTAAA 60.320 41.667 21.41 0.00 46.45 1.85
468 470 5.753744 CACAGCACGTGGTAAAATCTAAAA 58.246 37.500 21.41 0.00 42.34 1.52
469 471 6.202937 CACAGCACGTGGTAAAATCTAAAAA 58.797 36.000 21.41 0.00 42.34 1.94
494 496 3.209410 CTCACAAAGGAAAGTGCAGAGT 58.791 45.455 0.00 0.00 35.76 3.24
501 503 4.689612 AGGAAAGTGCAGAGTAACAGAA 57.310 40.909 0.00 0.00 0.00 3.02
504 506 4.381411 GAAAGTGCAGAGTAACAGAAGGT 58.619 43.478 0.00 0.00 0.00 3.50
506 508 3.733337 AGTGCAGAGTAACAGAAGGTTG 58.267 45.455 0.00 0.00 40.73 3.77
507 509 3.134804 AGTGCAGAGTAACAGAAGGTTGT 59.865 43.478 0.00 0.00 40.73 3.32
508 510 3.248602 GTGCAGAGTAACAGAAGGTTGTG 59.751 47.826 0.00 0.00 40.73 3.33
551 697 5.178438 GCATATAACTAGTTTCAGGAGCTGC 59.822 44.000 14.49 0.00 0.00 5.25
553 699 0.247736 ACTAGTTTCAGGAGCTGCCG 59.752 55.000 0.00 0.00 43.43 5.69
554 700 1.079127 TAGTTTCAGGAGCTGCCGC 60.079 57.895 0.00 0.00 43.43 6.53
555 701 1.826340 TAGTTTCAGGAGCTGCCGCA 61.826 55.000 0.00 0.00 43.43 5.69
630 929 4.803426 CCGACGTGCTCCAGCTCC 62.803 72.222 0.00 0.00 42.66 4.70
634 933 3.385384 CGTGCTCCAGCTCCAGGA 61.385 66.667 0.00 0.00 42.66 3.86
636 935 2.203832 TGCTCCAGCTCCAGGACA 60.204 61.111 0.00 0.00 42.66 4.02
637 936 1.842920 TGCTCCAGCTCCAGGACAA 60.843 57.895 0.00 0.00 42.66 3.18
638 937 1.078567 GCTCCAGCTCCAGGACAAG 60.079 63.158 0.00 0.00 38.21 3.16
640 939 2.045536 CCAGCTCCAGGACAAGCC 60.046 66.667 0.00 0.00 39.39 4.35
641 940 2.045536 CAGCTCCAGGACAAGCCC 60.046 66.667 0.00 0.00 39.39 5.19
642 941 3.710722 AGCTCCAGGACAAGCCCG 61.711 66.667 0.00 0.00 39.39 6.13
643 942 4.785453 GCTCCAGGACAAGCCCGG 62.785 72.222 0.00 0.00 37.37 5.73
644 943 3.322466 CTCCAGGACAAGCCCGGT 61.322 66.667 0.00 0.00 37.37 5.28
645 944 3.612247 CTCCAGGACAAGCCCGGTG 62.612 68.421 0.00 0.00 37.37 4.94
647 946 4.641645 CAGGACAAGCCCGGTGCA 62.642 66.667 15.92 0.00 44.83 4.57
686 985 2.434884 CCCGTGCAAGCTGACGAT 60.435 61.111 13.23 0.00 37.81 3.73
690 989 1.690283 CGTGCAAGCTGACGATGGAG 61.690 60.000 7.26 0.00 37.81 3.86
728 1037 4.687215 GCCTCACGCAGCAGGTCA 62.687 66.667 0.00 0.00 37.47 4.02
748 1082 2.297129 GGTGGAGCCTCCTCTTGCT 61.297 63.158 12.94 0.00 41.42 3.91
749 1083 1.682257 GTGGAGCCTCCTCTTGCTT 59.318 57.895 12.94 0.00 38.11 3.91
750 1084 0.676151 GTGGAGCCTCCTCTTGCTTG 60.676 60.000 12.94 0.00 38.11 4.01
752 1086 1.299321 GAGCCTCCTCTTGCTTGCT 59.701 57.895 0.00 0.00 38.11 3.91
753 1087 1.002379 AGCCTCCTCTTGCTTGCTG 60.002 57.895 0.00 0.00 32.94 4.41
755 1089 1.002379 CCTCCTCTTGCTTGCTGCT 60.002 57.895 0.00 0.00 43.37 4.24
757 1091 1.924320 CTCCTCTTGCTTGCTGCTGC 61.924 60.000 8.89 8.89 43.37 5.25
760 1094 3.667282 CTTGCTTGCTGCTGCCGT 61.667 61.111 13.47 0.00 43.37 5.68
761 1095 3.606065 CTTGCTTGCTGCTGCCGTC 62.606 63.158 13.47 2.41 43.37 4.79
976 1709 1.003118 TCCATCCACTCCAAAACCGAG 59.997 52.381 0.00 0.00 0.00 4.63
1052 1799 3.823330 CTACGGCGCCTTCGACCT 61.823 66.667 26.68 0.00 41.73 3.85
1195 1942 1.994507 CTGCGGGATTCTCGACGACT 61.995 60.000 10.80 0.00 0.00 4.18
1202 1949 2.464865 GATTCTCGACGACTTCATGGG 58.535 52.381 0.00 0.00 0.00 4.00
1279 2029 1.286260 GAACTCGCCGACTCTGTGT 59.714 57.895 0.00 0.00 0.00 3.72
1394 2195 0.107312 ATGCCGATGAAGAAGCTGCT 60.107 50.000 0.00 0.00 0.00 4.24
1453 2260 4.671590 TCTCCGCCGACCCTGACA 62.672 66.667 0.00 0.00 0.00 3.58
1603 2463 1.628846 GGTTACCAGGAAGCAGAGGAA 59.371 52.381 0.00 0.00 0.00 3.36
1672 2550 1.001641 GCAGCCAATCAGGAGGTGT 60.002 57.895 0.00 0.00 41.22 4.16
1673 2551 1.310933 GCAGCCAATCAGGAGGTGTG 61.311 60.000 0.00 0.00 41.22 3.82
1757 2655 8.017418 AGGTCTCTAGTCAAGAAAATCCATAG 57.983 38.462 0.00 0.00 32.46 2.23
1777 2678 2.761208 AGCTAGTGTCCTGGTCACATAC 59.239 50.000 22.74 12.57 38.16 2.39
1778 2679 2.496070 GCTAGTGTCCTGGTCACATACA 59.504 50.000 22.74 3.39 38.16 2.29
1780 2681 3.402628 AGTGTCCTGGTCACATACAAC 57.597 47.619 22.74 0.00 38.16 3.32
1781 2682 2.703536 AGTGTCCTGGTCACATACAACA 59.296 45.455 22.74 1.28 38.16 3.33
1824 2745 4.277423 TCGAATCTCGAACATGCCATACTA 59.723 41.667 0.00 0.00 46.90 1.82
1836 2757 5.874810 ACATGCCATACTACAGTTGTAACAG 59.125 40.000 0.00 0.00 0.00 3.16
1837 2758 4.250464 TGCCATACTACAGTTGTAACAGC 58.750 43.478 0.00 3.87 0.00 4.40
1839 2760 5.186215 TGCCATACTACAGTTGTAACAGCTA 59.814 40.000 0.00 0.00 0.00 3.32
1841 2762 6.035758 GCCATACTACAGTTGTAACAGCTAAC 59.964 42.308 0.00 0.00 0.00 2.34
1858 2783 6.071334 ACAGCTAACTAGAACTACTGCAATGA 60.071 38.462 0.00 0.00 0.00 2.57
1860 2785 7.493971 CAGCTAACTAGAACTACTGCAATGAAT 59.506 37.037 0.00 0.00 0.00 2.57
1861 2786 7.493971 AGCTAACTAGAACTACTGCAATGAATG 59.506 37.037 0.00 0.00 0.00 2.67
1903 2832 7.360353 GCTCGTATGCATGTTATGTATGTGATT 60.360 37.037 10.16 0.00 36.27 2.57
1906 2835 7.741652 CGTATGCATGTTATGTATGTGATTGAC 59.258 37.037 10.16 0.00 36.27 3.18
1998 3257 4.037208 GTCATGTTGGGGAAGATTGCATAG 59.963 45.833 0.00 0.00 0.00 2.23
2012 3271 2.097036 TGCATAGAAAGCAGCAGCAAT 58.903 42.857 3.17 0.00 45.49 3.56
2021 3280 4.634184 AAGCAGCAGCAATTAGAATCTG 57.366 40.909 3.17 0.00 45.49 2.90
2074 3366 6.143438 GTGTCAAATCACAAGAATGCTTTCTG 59.857 38.462 14.98 11.44 41.42 3.02
2086 3378 2.706555 GCTTTCTGCAGTTTACACCC 57.293 50.000 14.67 0.00 42.31 4.61
2089 3381 3.476552 CTTTCTGCAGTTTACACCCAGA 58.523 45.455 14.67 0.00 32.65 3.86
2100 3392 7.094377 GCAGTTTACACCCAGATATTTCAAAGA 60.094 37.037 0.00 0.00 0.00 2.52
2134 3432 8.003784 GCTATGTTACAAAGAACAAAATGCAAC 58.996 33.333 0.00 0.00 42.39 4.17
2135 3433 7.840342 ATGTTACAAAGAACAAAATGCAACA 57.160 28.000 0.00 0.00 42.39 3.33
2136 3434 7.054855 TGTTACAAAGAACAAAATGCAACAC 57.945 32.000 0.00 0.00 36.39 3.32
2137 3435 6.870965 TGTTACAAAGAACAAAATGCAACACT 59.129 30.769 0.00 0.00 36.39 3.55
2150 3448 3.544356 GCAACACTGCTAGAGAAAACC 57.456 47.619 0.00 0.00 45.74 3.27
2151 3449 2.226674 GCAACACTGCTAGAGAAAACCC 59.773 50.000 0.00 0.00 45.74 4.11
2152 3450 2.814336 CAACACTGCTAGAGAAAACCCC 59.186 50.000 0.00 0.00 0.00 4.95
2153 3451 2.054799 ACACTGCTAGAGAAAACCCCA 58.945 47.619 0.00 0.00 0.00 4.96
2154 3452 2.441750 ACACTGCTAGAGAAAACCCCAA 59.558 45.455 0.00 0.00 0.00 4.12
2155 3453 3.074538 ACACTGCTAGAGAAAACCCCAAT 59.925 43.478 0.00 0.00 0.00 3.16
2156 3454 4.288626 ACACTGCTAGAGAAAACCCCAATA 59.711 41.667 0.00 0.00 0.00 1.90
2157 3455 4.878397 CACTGCTAGAGAAAACCCCAATAG 59.122 45.833 0.00 0.00 0.00 1.73
2158 3456 4.536489 ACTGCTAGAGAAAACCCCAATAGT 59.464 41.667 0.00 0.00 0.00 2.12
2159 3457 5.724854 ACTGCTAGAGAAAACCCCAATAGTA 59.275 40.000 0.00 0.00 0.00 1.82
2160 3458 6.127026 ACTGCTAGAGAAAACCCCAATAGTAG 60.127 42.308 0.00 0.00 0.00 2.57
2161 3459 5.057819 GCTAGAGAAAACCCCAATAGTAGC 58.942 45.833 0.00 0.00 0.00 3.58
2162 3460 4.138487 AGAGAAAACCCCAATAGTAGCG 57.862 45.455 0.00 0.00 0.00 4.26
2163 3461 2.612672 GAGAAAACCCCAATAGTAGCGC 59.387 50.000 0.00 0.00 0.00 5.92
2164 3462 2.238898 AGAAAACCCCAATAGTAGCGCT 59.761 45.455 17.26 17.26 0.00 5.92
2165 3463 2.038387 AAACCCCAATAGTAGCGCTG 57.962 50.000 22.90 1.90 0.00 5.18
2166 3464 0.180406 AACCCCAATAGTAGCGCTGG 59.820 55.000 22.90 12.56 0.00 4.85
2167 3465 0.981277 ACCCCAATAGTAGCGCTGGT 60.981 55.000 22.90 13.45 0.00 4.00
2168 3466 0.180406 CCCCAATAGTAGCGCTGGTT 59.820 55.000 22.90 7.82 0.00 3.67
2169 3467 1.408266 CCCCAATAGTAGCGCTGGTTT 60.408 52.381 22.90 5.50 0.00 3.27
2170 3468 2.365582 CCCAATAGTAGCGCTGGTTTT 58.634 47.619 22.90 5.90 0.00 2.43
2171 3469 3.537580 CCCAATAGTAGCGCTGGTTTTA 58.462 45.455 22.90 5.42 0.00 1.52
2172 3470 3.560068 CCCAATAGTAGCGCTGGTTTTAG 59.440 47.826 22.90 3.86 0.00 1.85
2173 3471 4.439057 CCAATAGTAGCGCTGGTTTTAGA 58.561 43.478 22.90 0.00 0.00 2.10
2174 3472 4.873827 CCAATAGTAGCGCTGGTTTTAGAA 59.126 41.667 22.90 0.00 0.00 2.10
2175 3473 5.220605 CCAATAGTAGCGCTGGTTTTAGAAC 60.221 44.000 22.90 6.62 34.96 3.01
2176 3474 3.679824 AGTAGCGCTGGTTTTAGAACT 57.320 42.857 22.90 9.22 36.03 3.01
2177 3475 4.796038 AGTAGCGCTGGTTTTAGAACTA 57.204 40.909 22.90 0.00 36.03 2.24
2178 3476 5.340439 AGTAGCGCTGGTTTTAGAACTAT 57.660 39.130 22.90 0.00 36.03 2.12
2179 3477 5.731591 AGTAGCGCTGGTTTTAGAACTATT 58.268 37.500 22.90 0.00 36.03 1.73
2180 3478 6.870769 AGTAGCGCTGGTTTTAGAACTATTA 58.129 36.000 22.90 0.00 36.03 0.98
2181 3479 6.979238 AGTAGCGCTGGTTTTAGAACTATTAG 59.021 38.462 22.90 0.00 36.03 1.73
2182 3480 5.731591 AGCGCTGGTTTTAGAACTATTAGT 58.268 37.500 10.39 0.00 36.03 2.24
2183 3481 6.870769 AGCGCTGGTTTTAGAACTATTAGTA 58.129 36.000 10.39 0.00 36.03 1.82
2184 3482 6.979238 AGCGCTGGTTTTAGAACTATTAGTAG 59.021 38.462 10.39 0.00 36.03 2.57
2185 3483 6.292221 GCGCTGGTTTTAGAACTATTAGTAGC 60.292 42.308 0.00 0.00 36.03 3.58
2186 3484 6.074994 CGCTGGTTTTAGAACTATTAGTAGCG 60.075 42.308 13.99 13.99 36.03 4.26
2187 3485 6.292221 GCTGGTTTTAGAACTATTAGTAGCGC 60.292 42.308 0.00 0.00 36.03 5.92
2188 3486 6.870769 TGGTTTTAGAACTATTAGTAGCGCT 58.129 36.000 17.26 17.26 36.03 5.92
2189 3487 7.325694 TGGTTTTAGAACTATTAGTAGCGCTT 58.674 34.615 18.68 0.00 36.03 4.68
2190 3488 7.277098 TGGTTTTAGAACTATTAGTAGCGCTTG 59.723 37.037 18.68 0.00 36.03 4.01
2191 3489 7.277319 GGTTTTAGAACTATTAGTAGCGCTTGT 59.723 37.037 18.68 5.70 36.03 3.16
2192 3490 9.294030 GTTTTAGAACTATTAGTAGCGCTTGTA 57.706 33.333 18.68 4.49 32.91 2.41
2210 3508 5.828747 CTTGTATAAGCGCTACCACTAAGA 58.171 41.667 12.05 0.00 0.00 2.10
2211 3509 5.179045 TGTATAAGCGCTACCACTAAGAC 57.821 43.478 12.05 2.56 0.00 3.01
2212 3510 4.641541 TGTATAAGCGCTACCACTAAGACA 59.358 41.667 12.05 5.26 0.00 3.41
2213 3511 2.365408 AAGCGCTACCACTAAGACAC 57.635 50.000 12.05 0.00 0.00 3.67
2214 3512 1.546961 AGCGCTACCACTAAGACACT 58.453 50.000 8.99 0.00 0.00 3.55
2215 3513 2.719739 AGCGCTACCACTAAGACACTA 58.280 47.619 8.99 0.00 0.00 2.74
2216 3514 2.422832 AGCGCTACCACTAAGACACTAC 59.577 50.000 8.99 0.00 0.00 2.73
2217 3515 2.163010 GCGCTACCACTAAGACACTACA 59.837 50.000 0.00 0.00 0.00 2.74
2218 3516 3.731264 GCGCTACCACTAAGACACTACAG 60.731 52.174 0.00 0.00 0.00 2.74
2219 3517 3.731264 CGCTACCACTAAGACACTACAGC 60.731 52.174 0.00 0.00 0.00 4.40
2220 3518 3.444388 GCTACCACTAAGACACTACAGCT 59.556 47.826 0.00 0.00 0.00 4.24
2221 3519 4.639310 GCTACCACTAAGACACTACAGCTA 59.361 45.833 0.00 0.00 0.00 3.32
2222 3520 5.125097 GCTACCACTAAGACACTACAGCTAA 59.875 44.000 0.00 0.00 0.00 3.09
2223 3521 5.388408 ACCACTAAGACACTACAGCTAAC 57.612 43.478 0.00 0.00 0.00 2.34
2224 3522 5.078256 ACCACTAAGACACTACAGCTAACT 58.922 41.667 0.00 0.00 0.00 2.24
2242 3540 4.367039 AACTGGTAGCAGTATTGTTGGT 57.633 40.909 26.75 6.90 34.56 3.67
2243 3541 3.939066 ACTGGTAGCAGTATTGTTGGTC 58.061 45.455 25.49 0.00 32.97 4.02
2244 3542 3.583086 ACTGGTAGCAGTATTGTTGGTCT 59.417 43.478 25.49 0.00 32.97 3.85
2245 3543 4.775780 ACTGGTAGCAGTATTGTTGGTCTA 59.224 41.667 25.49 0.00 32.97 2.59
2246 3544 5.080969 TGGTAGCAGTATTGTTGGTCTAC 57.919 43.478 0.00 0.00 0.00 2.59
2247 3545 4.775780 TGGTAGCAGTATTGTTGGTCTACT 59.224 41.667 0.00 0.00 0.00 2.57
2248 3546 5.953548 TGGTAGCAGTATTGTTGGTCTACTA 59.046 40.000 0.00 0.00 0.00 1.82
2249 3547 6.096423 TGGTAGCAGTATTGTTGGTCTACTAG 59.904 42.308 0.00 0.00 0.00 2.57
2250 3548 5.012328 AGCAGTATTGTTGGTCTACTAGC 57.988 43.478 0.00 0.00 0.00 3.42
2251 3549 3.797256 GCAGTATTGTTGGTCTACTAGCG 59.203 47.826 0.00 0.00 0.00 4.26
2252 3550 3.797256 CAGTATTGTTGGTCTACTAGCGC 59.203 47.826 0.00 0.00 0.00 5.92
2253 3551 3.700038 AGTATTGTTGGTCTACTAGCGCT 59.300 43.478 17.26 17.26 0.00 5.92
2254 3552 4.885907 AGTATTGTTGGTCTACTAGCGCTA 59.114 41.667 17.75 17.75 0.00 4.26
2255 3553 3.498927 TTGTTGGTCTACTAGCGCTAC 57.501 47.619 14.45 5.78 0.00 3.58
2256 3554 2.719739 TGTTGGTCTACTAGCGCTACT 58.280 47.619 14.45 7.48 0.00 2.57
2257 3555 2.422479 TGTTGGTCTACTAGCGCTACTG 59.578 50.000 14.45 7.66 0.00 2.74
2258 3556 2.681848 GTTGGTCTACTAGCGCTACTGA 59.318 50.000 14.45 8.98 0.00 3.41
2259 3557 3.210232 TGGTCTACTAGCGCTACTGAT 57.790 47.619 14.45 1.97 0.00 2.90
2260 3558 4.347360 TGGTCTACTAGCGCTACTGATA 57.653 45.455 14.45 3.11 0.00 2.15
2261 3559 4.063689 TGGTCTACTAGCGCTACTGATAC 58.936 47.826 14.45 8.19 0.00 2.24
2262 3560 4.063689 GGTCTACTAGCGCTACTGATACA 58.936 47.826 14.45 0.00 0.00 2.29
2263 3561 4.083908 GGTCTACTAGCGCTACTGATACAC 60.084 50.000 14.45 4.00 0.00 2.90
2264 3562 4.063689 TCTACTAGCGCTACTGATACACC 58.936 47.826 14.45 0.00 0.00 4.16
2265 3563 2.933573 ACTAGCGCTACTGATACACCT 58.066 47.619 14.45 0.00 0.00 4.00
2266 3564 4.082665 ACTAGCGCTACTGATACACCTA 57.917 45.455 14.45 0.00 0.00 3.08
2267 3565 4.066490 ACTAGCGCTACTGATACACCTAG 58.934 47.826 14.45 2.96 0.00 3.02
2268 3566 2.933573 AGCGCTACTGATACACCTAGT 58.066 47.619 8.99 0.00 0.00 2.57
2269 3567 3.288964 AGCGCTACTGATACACCTAGTT 58.711 45.455 8.99 0.00 0.00 2.24
2270 3568 4.458397 AGCGCTACTGATACACCTAGTTA 58.542 43.478 8.99 0.00 0.00 2.24
2271 3569 4.515944 AGCGCTACTGATACACCTAGTTAG 59.484 45.833 8.99 0.00 0.00 2.34
2272 3570 4.785417 CGCTACTGATACACCTAGTTAGC 58.215 47.826 0.00 0.00 0.00 3.09
2273 3571 4.275196 CGCTACTGATACACCTAGTTAGCA 59.725 45.833 0.00 0.00 0.00 3.49
2274 3572 5.561145 CGCTACTGATACACCTAGTTAGCAG 60.561 48.000 6.87 6.87 0.00 4.24
2275 3573 5.299782 GCTACTGATACACCTAGTTAGCAGT 59.700 44.000 14.80 14.80 37.90 4.40
2276 3574 5.838531 ACTGATACACCTAGTTAGCAGTC 57.161 43.478 7.86 0.00 32.70 3.51
2277 3575 4.335874 ACTGATACACCTAGTTAGCAGTCG 59.664 45.833 7.86 0.00 32.70 4.18
2278 3576 3.066342 TGATACACCTAGTTAGCAGTCGC 59.934 47.826 0.00 0.00 38.99 5.19
2279 3577 0.170561 ACACCTAGTTAGCAGTCGCG 59.829 55.000 0.00 0.00 45.49 5.87
2280 3578 1.139095 ACCTAGTTAGCAGTCGCGC 59.861 57.895 0.00 0.00 45.49 6.86
2281 3579 1.313812 ACCTAGTTAGCAGTCGCGCT 61.314 55.000 5.56 0.00 45.49 5.92
2282 3580 0.592754 CCTAGTTAGCAGTCGCGCTC 60.593 60.000 5.56 0.00 42.62 5.03
2283 3581 0.378962 CTAGTTAGCAGTCGCGCTCT 59.621 55.000 5.56 0.15 42.62 4.09
2284 3582 0.809385 TAGTTAGCAGTCGCGCTCTT 59.191 50.000 5.56 0.00 42.62 2.85
2285 3583 0.038159 AGTTAGCAGTCGCGCTCTTT 60.038 50.000 5.56 0.00 42.62 2.52
2286 3584 0.367210 GTTAGCAGTCGCGCTCTTTC 59.633 55.000 5.56 0.00 42.62 2.62
2287 3585 0.243907 TTAGCAGTCGCGCTCTTTCT 59.756 50.000 5.56 6.11 42.62 2.52
2288 3586 0.179161 TAGCAGTCGCGCTCTTTCTC 60.179 55.000 5.56 0.00 42.62 2.87
2289 3587 2.783064 GCAGTCGCGCTCTTTCTCG 61.783 63.158 5.56 0.00 0.00 4.04
2290 3588 1.154207 CAGTCGCGCTCTTTCTCGA 60.154 57.895 5.56 0.00 0.00 4.04
2291 3589 0.729478 CAGTCGCGCTCTTTCTCGAA 60.729 55.000 5.56 0.00 32.49 3.71
2292 3590 0.039437 AGTCGCGCTCTTTCTCGAAA 60.039 50.000 5.56 0.00 32.49 3.46
2293 3591 0.782384 GTCGCGCTCTTTCTCGAAAA 59.218 50.000 5.56 0.00 32.49 2.29
2294 3592 1.060713 TCGCGCTCTTTCTCGAAAAG 58.939 50.000 5.56 11.51 0.00 2.27
2295 3593 0.517335 CGCGCTCTTTCTCGAAAAGC 60.517 55.000 5.56 12.42 34.34 3.51
2296 3594 0.517335 GCGCTCTTTCTCGAAAAGCG 60.517 55.000 26.05 26.05 46.97 4.68
2297 3595 0.517335 CGCTCTTTCTCGAAAAGCGC 60.517 55.000 22.63 17.49 43.36 5.92
2298 3596 0.179212 GCTCTTTCTCGAAAAGCGCC 60.179 55.000 17.02 0.00 40.61 6.53
2299 3597 0.093705 CTCTTTCTCGAAAAGCGCCG 59.906 55.000 2.29 0.00 40.61 6.46
2300 3598 1.509995 CTTTCTCGAAAAGCGCCGC 60.510 57.895 2.29 0.00 40.61 6.53
2301 3599 1.901650 CTTTCTCGAAAAGCGCCGCT 61.902 55.000 5.39 5.39 42.56 5.52
2302 3600 2.170260 TTTCTCGAAAAGCGCCGCTG 62.170 55.000 14.52 0.00 39.62 5.18
2303 3601 3.112075 CTCGAAAAGCGCCGCTGA 61.112 61.111 14.52 4.22 39.62 4.26
2304 3602 2.434185 TCGAAAAGCGCCGCTGAT 60.434 55.556 14.52 4.01 39.62 2.90
2305 3603 1.145759 CTCGAAAAGCGCCGCTGATA 61.146 55.000 14.52 0.00 39.62 2.15
2306 3604 1.145759 TCGAAAAGCGCCGCTGATAG 61.146 55.000 14.52 5.19 39.62 2.08
2307 3605 1.145759 CGAAAAGCGCCGCTGATAGA 61.146 55.000 14.52 0.00 39.62 1.98
2308 3606 0.579156 GAAAAGCGCCGCTGATAGAG 59.421 55.000 14.52 0.00 39.62 2.43
2309 3607 0.811616 AAAAGCGCCGCTGATAGAGG 60.812 55.000 14.52 0.00 39.62 3.69
2310 3608 1.961180 AAAGCGCCGCTGATAGAGGT 61.961 55.000 14.52 0.00 39.62 3.85
2311 3609 1.107538 AAGCGCCGCTGATAGAGGTA 61.108 55.000 14.52 0.00 39.62 3.08
2312 3610 1.107538 AGCGCCGCTGATAGAGGTAA 61.108 55.000 12.53 0.00 37.51 2.85
2313 3611 0.664767 GCGCCGCTGATAGAGGTAAG 60.665 60.000 0.00 0.00 37.51 2.34
2314 3612 0.669077 CGCCGCTGATAGAGGTAAGT 59.331 55.000 0.72 0.00 37.51 2.24
2315 3613 1.878088 CGCCGCTGATAGAGGTAAGTA 59.122 52.381 0.72 0.00 37.51 2.24
2316 3614 2.095668 CGCCGCTGATAGAGGTAAGTAG 60.096 54.545 0.72 0.00 37.51 2.57
2317 3615 2.351932 GCCGCTGATAGAGGTAAGTAGC 60.352 54.545 0.72 0.00 37.51 3.58
2318 3616 2.885266 CCGCTGATAGAGGTAAGTAGCA 59.115 50.000 0.00 0.00 29.89 3.49
2319 3617 3.057876 CCGCTGATAGAGGTAAGTAGCAG 60.058 52.174 0.00 0.00 36.06 4.24
2320 3618 3.566322 CGCTGATAGAGGTAAGTAGCAGT 59.434 47.826 0.00 0.00 35.52 4.40
2321 3619 4.755629 CGCTGATAGAGGTAAGTAGCAGTA 59.244 45.833 0.00 0.00 35.52 2.74
2322 3620 5.106869 CGCTGATAGAGGTAAGTAGCAGTAG 60.107 48.000 0.00 0.00 35.52 2.57
2323 3621 5.335348 GCTGATAGAGGTAAGTAGCAGTAGC 60.335 48.000 0.00 0.00 35.52 3.58
2339 3637 5.890604 GCAGTAGCGTTTCTTTTAAAAAGC 58.109 37.500 1.66 3.58 41.86 3.51
2340 3638 5.386019 GCAGTAGCGTTTCTTTTAAAAAGCG 60.386 40.000 1.66 3.59 44.78 4.68
2341 3639 4.673761 AGTAGCGTTTCTTTTAAAAAGCGC 59.326 37.500 19.76 19.76 44.78 5.92
2342 3640 2.792674 AGCGTTTCTTTTAAAAAGCGCC 59.207 40.909 22.18 10.57 44.78 6.53
2343 3641 2.536393 GCGTTTCTTTTAAAAAGCGCCA 59.464 40.909 17.76 0.00 34.75 5.69
2344 3642 3.600684 GCGTTTCTTTTAAAAAGCGCCAC 60.601 43.478 17.76 3.62 34.75 5.01
2345 3643 3.794564 CGTTTCTTTTAAAAAGCGCCACT 59.205 39.130 2.29 0.00 0.00 4.00
2346 3644 4.317069 CGTTTCTTTTAAAAAGCGCCACTG 60.317 41.667 2.29 0.00 0.00 3.66
2347 3645 2.738135 TCTTTTAAAAAGCGCCACTGC 58.262 42.857 2.29 0.00 0.00 4.40
2354 3652 4.800554 AGCGCCACTGCTTAGTTT 57.199 50.000 2.29 0.00 44.46 2.66
2355 3653 3.021451 AGCGCCACTGCTTAGTTTT 57.979 47.368 2.29 0.00 44.46 2.43
2356 3654 1.318576 AGCGCCACTGCTTAGTTTTT 58.681 45.000 2.29 0.00 44.46 1.94
2357 3655 1.266989 AGCGCCACTGCTTAGTTTTTC 59.733 47.619 2.29 0.00 44.46 2.29
2358 3656 1.266989 GCGCCACTGCTTAGTTTTTCT 59.733 47.619 0.00 0.00 34.43 2.52
2359 3657 2.482721 GCGCCACTGCTTAGTTTTTCTA 59.517 45.455 0.00 0.00 34.43 2.10
2360 3658 3.127030 GCGCCACTGCTTAGTTTTTCTAT 59.873 43.478 0.00 0.00 34.43 1.98
2361 3659 4.379499 GCGCCACTGCTTAGTTTTTCTATT 60.379 41.667 0.00 0.00 34.43 1.73
2362 3660 5.699839 CGCCACTGCTTAGTTTTTCTATTT 58.300 37.500 0.00 0.00 34.43 1.40
2363 3661 6.149633 CGCCACTGCTTAGTTTTTCTATTTT 58.850 36.000 0.00 0.00 34.43 1.82
2364 3662 6.640907 CGCCACTGCTTAGTTTTTCTATTTTT 59.359 34.615 0.00 0.00 34.43 1.94
2387 3685 8.810652 TTTTCTTAATTGCAGCTTATTTTCGT 57.189 26.923 0.00 0.00 0.00 3.85
2388 3686 8.447787 TTTCTTAATTGCAGCTTATTTTCGTC 57.552 30.769 0.00 0.00 0.00 4.20
2389 3687 6.247903 TCTTAATTGCAGCTTATTTTCGTCG 58.752 36.000 0.00 0.00 0.00 5.12
2390 3688 4.419522 AATTGCAGCTTATTTTCGTCGT 57.580 36.364 0.00 0.00 0.00 4.34
2391 3689 5.539582 AATTGCAGCTTATTTTCGTCGTA 57.460 34.783 0.00 0.00 0.00 3.43
2392 3690 5.734855 ATTGCAGCTTATTTTCGTCGTAT 57.265 34.783 0.00 0.00 0.00 3.06
2393 3691 5.539582 TTGCAGCTTATTTTCGTCGTATT 57.460 34.783 0.00 0.00 0.00 1.89
2394 3692 5.539582 TGCAGCTTATTTTCGTCGTATTT 57.460 34.783 0.00 0.00 0.00 1.40
2395 3693 5.320723 TGCAGCTTATTTTCGTCGTATTTG 58.679 37.500 0.00 0.00 0.00 2.32
2396 3694 5.106869 TGCAGCTTATTTTCGTCGTATTTGT 60.107 36.000 0.00 0.00 0.00 2.83
2397 3695 6.091034 TGCAGCTTATTTTCGTCGTATTTGTA 59.909 34.615 0.00 0.00 0.00 2.41
2398 3696 7.123830 GCAGCTTATTTTCGTCGTATTTGTAT 58.876 34.615 0.00 0.00 0.00 2.29
2399 3697 8.270799 GCAGCTTATTTTCGTCGTATTTGTATA 58.729 33.333 0.00 0.00 0.00 1.47
2482 3780 2.869233 GTGTGAACACATGTTGCCTT 57.131 45.000 10.78 0.00 45.75 4.35
2483 3781 2.731217 GTGTGAACACATGTTGCCTTC 58.269 47.619 10.78 0.00 45.75 3.46
2484 3782 2.098934 GTGTGAACACATGTTGCCTTCA 59.901 45.455 10.78 0.00 45.75 3.02
2485 3783 2.098934 TGTGAACACATGTTGCCTTCAC 59.901 45.455 19.40 19.40 38.56 3.18
2486 3784 2.358898 GTGAACACATGTTGCCTTCACT 59.641 45.455 19.15 0.00 38.56 3.41
2487 3785 3.023119 TGAACACATGTTGCCTTCACTT 58.977 40.909 1.07 0.00 38.56 3.16
2488 3786 3.181488 TGAACACATGTTGCCTTCACTTG 60.181 43.478 1.07 0.00 38.56 3.16
2489 3787 2.653726 ACACATGTTGCCTTCACTTGA 58.346 42.857 0.00 0.00 0.00 3.02
2490 3788 3.023119 ACACATGTTGCCTTCACTTGAA 58.977 40.909 0.00 0.00 0.00 2.69
2491 3789 3.181487 ACACATGTTGCCTTCACTTGAAC 60.181 43.478 0.00 0.00 0.00 3.18
2492 3790 2.362077 ACATGTTGCCTTCACTTGAACC 59.638 45.455 0.00 0.00 0.00 3.62
2493 3791 2.435372 TGTTGCCTTCACTTGAACCT 57.565 45.000 0.00 0.00 0.00 3.50
2494 3792 3.569194 TGTTGCCTTCACTTGAACCTA 57.431 42.857 0.00 0.00 0.00 3.08
2495 3793 3.892284 TGTTGCCTTCACTTGAACCTAA 58.108 40.909 0.00 0.00 0.00 2.69
2496 3794 4.469657 TGTTGCCTTCACTTGAACCTAAT 58.530 39.130 0.00 0.00 0.00 1.73
2497 3795 4.518970 TGTTGCCTTCACTTGAACCTAATC 59.481 41.667 0.00 0.00 0.00 1.75
2498 3796 3.686016 TGCCTTCACTTGAACCTAATCC 58.314 45.455 0.00 0.00 0.00 3.01
2499 3797 3.073798 TGCCTTCACTTGAACCTAATCCA 59.926 43.478 0.00 0.00 0.00 3.41
2500 3798 4.263905 TGCCTTCACTTGAACCTAATCCAT 60.264 41.667 0.00 0.00 0.00 3.41
2501 3799 4.336713 GCCTTCACTTGAACCTAATCCATC 59.663 45.833 0.00 0.00 0.00 3.51
2502 3800 5.749462 CCTTCACTTGAACCTAATCCATCT 58.251 41.667 0.00 0.00 0.00 2.90
2503 3801 6.183347 CCTTCACTTGAACCTAATCCATCTT 58.817 40.000 0.00 0.00 0.00 2.40
2504 3802 6.660949 CCTTCACTTGAACCTAATCCATCTTT 59.339 38.462 0.00 0.00 0.00 2.52
2505 3803 7.148171 CCTTCACTTGAACCTAATCCATCTTTC 60.148 40.741 0.00 0.00 0.00 2.62
2506 3804 6.778821 TCACTTGAACCTAATCCATCTTTCA 58.221 36.000 0.00 0.00 0.00 2.69
2507 3805 6.655003 TCACTTGAACCTAATCCATCTTTCAC 59.345 38.462 0.00 0.00 0.00 3.18
2508 3806 6.430925 CACTTGAACCTAATCCATCTTTCACA 59.569 38.462 0.00 0.00 0.00 3.58
2509 3807 6.431234 ACTTGAACCTAATCCATCTTTCACAC 59.569 38.462 0.00 0.00 0.00 3.82
2510 3808 6.126863 TGAACCTAATCCATCTTTCACACT 57.873 37.500 0.00 0.00 0.00 3.55
2511 3809 5.939883 TGAACCTAATCCATCTTTCACACTG 59.060 40.000 0.00 0.00 0.00 3.66
2512 3810 5.505181 ACCTAATCCATCTTTCACACTGT 57.495 39.130 0.00 0.00 0.00 3.55
2513 3811 5.880901 ACCTAATCCATCTTTCACACTGTT 58.119 37.500 0.00 0.00 0.00 3.16
2514 3812 5.707298 ACCTAATCCATCTTTCACACTGTTG 59.293 40.000 0.00 0.00 0.00 3.33
2515 3813 5.707298 CCTAATCCATCTTTCACACTGTTGT 59.293 40.000 0.00 0.00 35.84 3.32
2516 3814 6.878923 CCTAATCCATCTTTCACACTGTTGTA 59.121 38.462 0.00 0.00 33.30 2.41
2517 3815 7.554118 CCTAATCCATCTTTCACACTGTTGTAT 59.446 37.037 0.00 0.00 33.30 2.29
2518 3816 9.599866 CTAATCCATCTTTCACACTGTTGTATA 57.400 33.333 0.00 0.00 33.30 1.47
2521 3819 8.942338 TCCATCTTTCACACTGTTGTATATAC 57.058 34.615 5.89 5.89 33.30 1.47
2522 3820 8.758829 TCCATCTTTCACACTGTTGTATATACT 58.241 33.333 13.89 0.00 33.30 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 1.001269 TCGTCGACCACCTCCTCAT 60.001 57.895 10.58 0.00 0.00 2.90
156 158 2.579684 AATCACGGCGAGGAAGGCTC 62.580 60.000 16.62 0.00 34.19 4.70
169 171 2.901840 CCCCCATGGCGAATCACG 60.902 66.667 6.09 0.00 45.66 4.35
211 213 4.389576 CACTGCCGCGTTGCTTCC 62.390 66.667 4.92 0.00 0.00 3.46
212 214 4.389576 CCACTGCCGCGTTGCTTC 62.390 66.667 4.92 0.00 0.00 3.86
275 277 0.969917 GAGCTCACCTCCTCTGCTCA 60.970 60.000 9.40 0.00 46.41 4.26
388 390 2.224549 TCCGACGACATTTTGCGAAAAT 59.775 40.909 2.54 2.39 41.57 1.82
405 407 1.348366 TCCGGGAAAAATTGTCTCCGA 59.652 47.619 12.57 0.00 39.83 4.55
415 417 2.751688 CCCTCCGTCCGGGAAAAA 59.248 61.111 0.00 0.00 46.61 1.94
425 427 2.174210 TGCTAGTATGTACTCCCTCCGT 59.826 50.000 0.00 0.00 37.73 4.69
433 435 2.753452 ACGTGCTGTGCTAGTATGTACT 59.247 45.455 0.00 0.00 39.14 2.73
466 468 4.622933 GCACTTTCCTTTGTGAGGGTTTTT 60.623 41.667 0.00 0.00 46.31 1.94
467 469 3.118775 GCACTTTCCTTTGTGAGGGTTTT 60.119 43.478 0.00 0.00 46.31 2.43
468 470 2.430694 GCACTTTCCTTTGTGAGGGTTT 59.569 45.455 0.00 0.00 46.31 3.27
469 471 2.031870 GCACTTTCCTTTGTGAGGGTT 58.968 47.619 0.00 0.00 46.31 4.11
470 472 1.064017 TGCACTTTCCTTTGTGAGGGT 60.064 47.619 0.00 0.00 46.31 4.34
471 473 1.610522 CTGCACTTTCCTTTGTGAGGG 59.389 52.381 0.00 0.00 46.31 4.30
473 475 3.209410 ACTCTGCACTTTCCTTTGTGAG 58.791 45.455 0.00 0.00 36.38 3.51
474 476 3.281727 ACTCTGCACTTTCCTTTGTGA 57.718 42.857 0.00 0.00 36.38 3.58
475 477 4.335315 TGTTACTCTGCACTTTCCTTTGTG 59.665 41.667 0.00 0.00 37.26 3.33
476 478 4.523083 TGTTACTCTGCACTTTCCTTTGT 58.477 39.130 0.00 0.00 0.00 2.83
477 479 4.816385 TCTGTTACTCTGCACTTTCCTTTG 59.184 41.667 0.00 0.00 0.00 2.77
478 480 5.036117 TCTGTTACTCTGCACTTTCCTTT 57.964 39.130 0.00 0.00 0.00 3.11
479 481 4.689612 TCTGTTACTCTGCACTTTCCTT 57.310 40.909 0.00 0.00 0.00 3.36
480 482 4.503991 CCTTCTGTTACTCTGCACTTTCCT 60.504 45.833 0.00 0.00 0.00 3.36
481 483 3.748568 CCTTCTGTTACTCTGCACTTTCC 59.251 47.826 0.00 0.00 0.00 3.13
482 484 4.381411 ACCTTCTGTTACTCTGCACTTTC 58.619 43.478 0.00 0.00 0.00 2.62
483 485 4.423625 ACCTTCTGTTACTCTGCACTTT 57.576 40.909 0.00 0.00 0.00 2.66
484 486 4.130118 CAACCTTCTGTTACTCTGCACTT 58.870 43.478 0.00 0.00 34.69 3.16
485 487 3.134804 ACAACCTTCTGTTACTCTGCACT 59.865 43.478 0.00 0.00 34.69 4.40
486 488 3.248602 CACAACCTTCTGTTACTCTGCAC 59.751 47.826 0.00 0.00 34.69 4.57
494 496 4.080807 TGTTCCAGACACAACCTTCTGTTA 60.081 41.667 0.00 0.00 38.06 2.41
501 503 3.279434 GAACTTGTTCCAGACACAACCT 58.721 45.455 2.31 0.00 38.18 3.50
504 506 3.358111 TGGAACTTGTTCCAGACACAA 57.642 42.857 25.93 6.73 45.55 3.33
537 539 2.359230 GCGGCAGCTCCTGAAACT 60.359 61.111 0.00 0.00 41.01 2.66
553 699 4.899687 CACTGCGCCGCATCATGC 62.900 66.667 14.15 0.00 38.13 4.06
554 700 2.752939 TTCACTGCGCCGCATCATG 61.753 57.895 14.15 12.03 38.13 3.07
555 701 2.436469 TTCACTGCGCCGCATCAT 60.436 55.556 14.15 0.00 38.13 2.45
630 929 4.641645 TGCACCGGGCTTGTCCTG 62.642 66.667 6.32 0.00 45.15 3.86
671 970 1.690283 CTCCATCGTCAGCTTGCACG 61.690 60.000 3.67 3.67 37.36 5.34
680 979 3.399181 GCCACCCCTCCATCGTCA 61.399 66.667 0.00 0.00 0.00 4.35
728 1037 2.120718 AAGAGGAGGCTCCACCGT 59.879 61.111 33.86 20.13 46.52 4.83
1195 1942 0.335019 TCGAGAGACTCCCCCATGAA 59.665 55.000 0.00 0.00 33.31 2.57
1453 2260 3.628280 GAGGCCGCTTCGTCTTCGT 62.628 63.158 0.00 0.00 38.33 3.85
1534 2394 4.141135 TCCATCTTCTCCTCCGATTAGAGT 60.141 45.833 0.00 0.00 31.53 3.24
1535 2395 4.402829 TCCATCTTCTCCTCCGATTAGAG 58.597 47.826 0.00 0.00 0.00 2.43
1539 2399 2.103941 GCTTCCATCTTCTCCTCCGATT 59.896 50.000 0.00 0.00 0.00 3.34
1540 2400 1.691434 GCTTCCATCTTCTCCTCCGAT 59.309 52.381 0.00 0.00 0.00 4.18
1640 2500 2.434884 CTGCATCGTCTTGGGCGT 60.435 61.111 0.00 0.00 0.00 5.68
1650 2510 1.164662 CCTCCTGATTGGCTGCATCG 61.165 60.000 0.50 0.00 35.26 3.84
1673 2551 0.322816 TTCTTCACCATGGAGCTGCC 60.323 55.000 21.47 0.00 37.10 4.85
1757 2655 2.496070 TGTATGTGACCAGGACACTAGC 59.504 50.000 20.79 11.75 38.81 3.42
1824 2745 7.052142 AGTTCTAGTTAGCTGTTACAACTGT 57.948 36.000 8.74 0.00 34.48 3.55
1836 2757 7.625553 CATTCATTGCAGTAGTTCTAGTTAGC 58.374 38.462 0.00 0.00 0.00 3.09
1858 2783 3.679389 AGCTAGTACAAGCAACTGCATT 58.321 40.909 4.22 0.00 45.30 3.56
1860 2785 2.688507 GAGCTAGTACAAGCAACTGCA 58.311 47.619 4.22 0.00 45.30 4.41
1861 2786 1.656095 CGAGCTAGTACAAGCAACTGC 59.344 52.381 0.00 0.00 45.30 4.40
1862 2787 2.947852 ACGAGCTAGTACAAGCAACTG 58.052 47.619 0.00 0.00 45.30 3.16
1863 2788 4.673441 CATACGAGCTAGTACAAGCAACT 58.327 43.478 9.00 0.00 45.30 3.16
1864 2789 3.243177 GCATACGAGCTAGTACAAGCAAC 59.757 47.826 9.00 0.00 45.30 4.17
1868 2793 4.611943 ACATGCATACGAGCTAGTACAAG 58.388 43.478 9.00 3.95 34.99 3.16
1869 2794 4.649088 ACATGCATACGAGCTAGTACAA 57.351 40.909 9.00 0.00 34.99 2.41
1870 2795 4.649088 AACATGCATACGAGCTAGTACA 57.351 40.909 9.00 4.43 34.99 2.90
1871 2796 6.150318 ACATAACATGCATACGAGCTAGTAC 58.850 40.000 9.00 0.00 34.99 2.73
1872 2797 6.327279 ACATAACATGCATACGAGCTAGTA 57.673 37.500 9.24 9.24 34.99 1.82
1873 2798 5.201713 ACATAACATGCATACGAGCTAGT 57.798 39.130 4.47 4.47 34.99 2.57
1874 2799 6.808704 ACATACATAACATGCATACGAGCTAG 59.191 38.462 0.00 0.00 34.99 3.42
1903 2832 7.041440 TCGCTTTAATTTCATCAACTTCTGTCA 60.041 33.333 0.00 0.00 0.00 3.58
1906 2835 7.521529 TCTCGCTTTAATTTCATCAACTTCTG 58.478 34.615 0.00 0.00 0.00 3.02
1942 2873 5.416952 TCTCTCCAAATCCTTTGCAGATTTC 59.583 40.000 8.91 0.00 40.98 2.17
1998 3257 5.035443 CAGATTCTAATTGCTGCTGCTTTC 58.965 41.667 17.00 0.00 40.48 2.62
2074 3366 6.509418 TTGAAATATCTGGGTGTAAACTGC 57.491 37.500 0.00 0.00 0.00 4.40
2100 3392 8.232913 TGTTCTTTGTAACATAGCCTTTTCTT 57.767 30.769 0.00 0.00 34.50 2.52
2134 3432 2.859165 TGGGGTTTTCTCTAGCAGTG 57.141 50.000 0.00 0.00 0.00 3.66
2135 3433 4.536489 ACTATTGGGGTTTTCTCTAGCAGT 59.464 41.667 0.00 0.00 0.00 4.40
2136 3434 5.104259 ACTATTGGGGTTTTCTCTAGCAG 57.896 43.478 0.00 0.00 0.00 4.24
2137 3435 5.396436 GCTACTATTGGGGTTTTCTCTAGCA 60.396 44.000 0.00 0.00 0.00 3.49
2139 3437 5.290386 CGCTACTATTGGGGTTTTCTCTAG 58.710 45.833 0.00 0.00 0.00 2.43
2140 3438 4.442472 GCGCTACTATTGGGGTTTTCTCTA 60.442 45.833 0.00 0.00 0.00 2.43
2141 3439 3.681874 GCGCTACTATTGGGGTTTTCTCT 60.682 47.826 0.00 0.00 0.00 3.10
2142 3440 2.612672 GCGCTACTATTGGGGTTTTCTC 59.387 50.000 0.00 0.00 0.00 2.87
2144 3442 2.354821 CAGCGCTACTATTGGGGTTTTC 59.645 50.000 10.99 0.00 0.00 2.29
2145 3443 2.365582 CAGCGCTACTATTGGGGTTTT 58.634 47.619 10.99 0.00 0.00 2.43
2146 3444 1.408266 CCAGCGCTACTATTGGGGTTT 60.408 52.381 10.99 0.00 0.00 3.27
2147 3445 0.180406 CCAGCGCTACTATTGGGGTT 59.820 55.000 10.99 0.00 0.00 4.11
2148 3446 0.981277 ACCAGCGCTACTATTGGGGT 60.981 55.000 10.99 7.96 34.99 4.95
2149 3447 0.180406 AACCAGCGCTACTATTGGGG 59.820 55.000 10.99 7.17 34.99 4.96
2150 3448 2.038387 AAACCAGCGCTACTATTGGG 57.962 50.000 10.99 8.06 34.99 4.12
2151 3449 4.439057 TCTAAAACCAGCGCTACTATTGG 58.561 43.478 10.99 10.00 36.76 3.16
2152 3450 5.581085 AGTTCTAAAACCAGCGCTACTATTG 59.419 40.000 10.99 0.00 35.92 1.90
2153 3451 5.731591 AGTTCTAAAACCAGCGCTACTATT 58.268 37.500 10.99 6.25 35.92 1.73
2154 3452 5.340439 AGTTCTAAAACCAGCGCTACTAT 57.660 39.130 10.99 0.00 35.92 2.12
2155 3453 4.796038 AGTTCTAAAACCAGCGCTACTA 57.204 40.909 10.99 0.00 35.92 1.82
2156 3454 3.679824 AGTTCTAAAACCAGCGCTACT 57.320 42.857 10.99 3.22 35.92 2.57
2157 3455 6.755607 ACTAATAGTTCTAAAACCAGCGCTAC 59.244 38.462 10.99 0.23 35.92 3.58
2158 3456 6.870769 ACTAATAGTTCTAAAACCAGCGCTA 58.129 36.000 10.99 0.00 35.92 4.26
2159 3457 5.731591 ACTAATAGTTCTAAAACCAGCGCT 58.268 37.500 2.64 2.64 35.92 5.92
2160 3458 6.292221 GCTACTAATAGTTCTAAAACCAGCGC 60.292 42.308 0.00 0.00 35.92 5.92
2161 3459 6.074994 CGCTACTAATAGTTCTAAAACCAGCG 60.075 42.308 12.06 12.06 35.92 5.18
2162 3460 6.292221 GCGCTACTAATAGTTCTAAAACCAGC 60.292 42.308 0.00 0.00 35.92 4.85
2163 3461 6.979238 AGCGCTACTAATAGTTCTAAAACCAG 59.021 38.462 8.99 0.00 35.92 4.00
2164 3462 6.870769 AGCGCTACTAATAGTTCTAAAACCA 58.129 36.000 8.99 0.00 35.92 3.67
2165 3463 7.277319 ACAAGCGCTACTAATAGTTCTAAAACC 59.723 37.037 12.05 0.00 35.92 3.27
2166 3464 8.182658 ACAAGCGCTACTAATAGTTCTAAAAC 57.817 34.615 12.05 0.00 35.50 2.43
2187 3485 5.686397 GTCTTAGTGGTAGCGCTTATACAAG 59.314 44.000 18.68 16.16 34.66 3.16
2188 3486 5.125900 TGTCTTAGTGGTAGCGCTTATACAA 59.874 40.000 18.68 0.00 0.00 2.41
2189 3487 4.641541 TGTCTTAGTGGTAGCGCTTATACA 59.358 41.667 18.68 10.55 0.00 2.29
2190 3488 4.974888 GTGTCTTAGTGGTAGCGCTTATAC 59.025 45.833 18.68 7.97 0.00 1.47
2191 3489 4.885907 AGTGTCTTAGTGGTAGCGCTTATA 59.114 41.667 18.68 0.00 0.00 0.98
2192 3490 3.700038 AGTGTCTTAGTGGTAGCGCTTAT 59.300 43.478 18.68 0.00 0.00 1.73
2193 3491 3.087031 AGTGTCTTAGTGGTAGCGCTTA 58.913 45.455 18.68 3.46 0.00 3.09
2194 3492 1.893801 AGTGTCTTAGTGGTAGCGCTT 59.106 47.619 18.68 0.00 0.00 4.68
2195 3493 1.546961 AGTGTCTTAGTGGTAGCGCT 58.453 50.000 17.26 17.26 0.00 5.92
2196 3494 2.163010 TGTAGTGTCTTAGTGGTAGCGC 59.837 50.000 0.00 0.00 0.00 5.92
2197 3495 3.731264 GCTGTAGTGTCTTAGTGGTAGCG 60.731 52.174 0.00 0.00 0.00 4.26
2198 3496 3.444388 AGCTGTAGTGTCTTAGTGGTAGC 59.556 47.826 0.00 0.00 0.00 3.58
2199 3497 6.374894 AGTTAGCTGTAGTGTCTTAGTGGTAG 59.625 42.308 0.00 0.00 0.00 3.18
2200 3498 6.150641 CAGTTAGCTGTAGTGTCTTAGTGGTA 59.849 42.308 0.00 0.00 37.92 3.25
2201 3499 5.047943 CAGTTAGCTGTAGTGTCTTAGTGGT 60.048 44.000 0.00 0.00 37.92 4.16
2202 3500 5.403246 CAGTTAGCTGTAGTGTCTTAGTGG 58.597 45.833 0.00 0.00 37.92 4.00
2203 3501 5.047943 ACCAGTTAGCTGTAGTGTCTTAGTG 60.048 44.000 5.81 0.00 41.02 2.74
2204 3502 5.078256 ACCAGTTAGCTGTAGTGTCTTAGT 58.922 41.667 5.81 0.00 41.02 2.24
2205 3503 5.646577 ACCAGTTAGCTGTAGTGTCTTAG 57.353 43.478 5.81 0.00 41.02 2.18
2206 3504 6.754702 CTACCAGTTAGCTGTAGTGTCTTA 57.245 41.667 5.81 0.00 41.02 2.10
2207 3505 5.646577 CTACCAGTTAGCTGTAGTGTCTT 57.353 43.478 5.81 0.00 41.02 3.01
2223 3521 4.207891 AGACCAACAATACTGCTACCAG 57.792 45.455 0.00 0.00 44.80 4.00
2224 3522 4.775780 AGTAGACCAACAATACTGCTACCA 59.224 41.667 0.00 0.00 0.00 3.25
2225 3523 5.340439 AGTAGACCAACAATACTGCTACC 57.660 43.478 0.00 0.00 0.00 3.18
2226 3524 5.978322 GCTAGTAGACCAACAATACTGCTAC 59.022 44.000 0.00 0.00 32.25 3.58
2227 3525 5.220989 CGCTAGTAGACCAACAATACTGCTA 60.221 44.000 0.00 0.00 32.25 3.49
2228 3526 4.440250 CGCTAGTAGACCAACAATACTGCT 60.440 45.833 0.00 0.00 32.25 4.24
2229 3527 3.797256 CGCTAGTAGACCAACAATACTGC 59.203 47.826 0.00 0.00 32.25 4.40
2230 3528 3.797256 GCGCTAGTAGACCAACAATACTG 59.203 47.826 0.00 0.00 32.25 2.74
2231 3529 3.700038 AGCGCTAGTAGACCAACAATACT 59.300 43.478 8.99 0.00 34.29 2.12
2232 3530 4.043037 AGCGCTAGTAGACCAACAATAC 57.957 45.455 8.99 0.00 0.00 1.89
2233 3531 4.885907 AGTAGCGCTAGTAGACCAACAATA 59.114 41.667 23.11 0.00 0.00 1.90
2234 3532 3.700038 AGTAGCGCTAGTAGACCAACAAT 59.300 43.478 23.11 0.00 0.00 2.71
2235 3533 3.087031 AGTAGCGCTAGTAGACCAACAA 58.913 45.455 23.11 0.00 0.00 2.83
2236 3534 2.422479 CAGTAGCGCTAGTAGACCAACA 59.578 50.000 23.84 0.00 0.00 3.33
2237 3535 2.681848 TCAGTAGCGCTAGTAGACCAAC 59.318 50.000 23.84 8.75 0.00 3.77
2238 3536 2.995283 TCAGTAGCGCTAGTAGACCAA 58.005 47.619 23.84 0.00 0.00 3.67
2239 3537 2.704464 TCAGTAGCGCTAGTAGACCA 57.296 50.000 23.84 4.01 0.00 4.02
2240 3538 4.063689 TGTATCAGTAGCGCTAGTAGACC 58.936 47.826 23.84 16.10 0.00 3.85
2241 3539 4.083908 GGTGTATCAGTAGCGCTAGTAGAC 60.084 50.000 23.84 19.91 0.00 2.59
2242 3540 4.063689 GGTGTATCAGTAGCGCTAGTAGA 58.936 47.826 23.84 21.34 0.00 2.59
2243 3541 4.066490 AGGTGTATCAGTAGCGCTAGTAG 58.934 47.826 23.84 17.34 0.00 2.57
2244 3542 4.082665 AGGTGTATCAGTAGCGCTAGTA 57.917 45.455 23.84 12.96 0.00 1.82
2245 3543 2.933573 AGGTGTATCAGTAGCGCTAGT 58.066 47.619 19.48 19.29 0.00 2.57
2246 3544 4.066490 ACTAGGTGTATCAGTAGCGCTAG 58.934 47.826 19.48 7.43 0.00 3.42
2247 3545 4.082665 ACTAGGTGTATCAGTAGCGCTA 57.917 45.455 14.45 14.45 0.00 4.26
2248 3546 2.933573 ACTAGGTGTATCAGTAGCGCT 58.066 47.619 17.26 17.26 0.00 5.92
2249 3547 3.712091 AACTAGGTGTATCAGTAGCGC 57.288 47.619 0.00 0.00 0.00 5.92
2250 3548 4.275196 TGCTAACTAGGTGTATCAGTAGCG 59.725 45.833 0.00 0.00 0.00 4.26
2251 3549 5.299782 ACTGCTAACTAGGTGTATCAGTAGC 59.700 44.000 0.00 0.00 33.81 3.58
2252 3550 6.292973 CGACTGCTAACTAGGTGTATCAGTAG 60.293 46.154 0.00 0.00 34.85 2.57
2253 3551 5.526479 CGACTGCTAACTAGGTGTATCAGTA 59.474 44.000 0.00 0.00 34.85 2.74
2254 3552 4.335874 CGACTGCTAACTAGGTGTATCAGT 59.664 45.833 0.00 0.00 36.25 3.41
2255 3553 4.790123 GCGACTGCTAACTAGGTGTATCAG 60.790 50.000 0.00 0.00 38.39 2.90
2256 3554 3.066342 GCGACTGCTAACTAGGTGTATCA 59.934 47.826 0.00 0.00 38.39 2.15
2257 3555 3.630101 GCGACTGCTAACTAGGTGTATC 58.370 50.000 0.00 0.00 38.39 2.24
2258 3556 2.033049 CGCGACTGCTAACTAGGTGTAT 59.967 50.000 0.00 0.00 39.65 2.29
2259 3557 1.399440 CGCGACTGCTAACTAGGTGTA 59.601 52.381 0.00 0.00 39.65 2.90
2260 3558 0.170561 CGCGACTGCTAACTAGGTGT 59.829 55.000 0.00 0.00 39.65 4.16
2261 3559 1.140407 GCGCGACTGCTAACTAGGTG 61.140 60.000 12.10 0.00 39.65 4.00
2262 3560 1.139095 GCGCGACTGCTAACTAGGT 59.861 57.895 12.10 0.00 39.65 3.08
2263 3561 1.433879 AGCGCGACTGCTAACTAGG 59.566 57.895 12.10 0.00 45.14 3.02
2271 3569 2.783064 CGAGAAAGAGCGCGACTGC 61.783 63.158 12.10 4.62 32.71 4.40
2272 3570 0.729478 TTCGAGAAAGAGCGCGACTG 60.729 55.000 12.10 0.00 39.69 3.51
2273 3571 0.039437 TTTCGAGAAAGAGCGCGACT 60.039 50.000 12.10 6.51 39.69 4.18
2274 3572 0.782384 TTTTCGAGAAAGAGCGCGAC 59.218 50.000 12.10 2.22 39.69 5.19
2275 3573 1.060713 CTTTTCGAGAAAGAGCGCGA 58.939 50.000 12.10 0.00 38.28 5.87
2276 3574 0.517335 GCTTTTCGAGAAAGAGCGCG 60.517 55.000 18.27 0.00 30.84 6.86
2277 3575 0.517335 CGCTTTTCGAGAAAGAGCGC 60.517 55.000 25.57 0.00 43.36 5.92
2278 3576 0.517335 GCGCTTTTCGAGAAAGAGCG 60.517 55.000 28.74 28.74 46.97 5.03
2279 3577 3.282121 GCGCTTTTCGAGAAAGAGC 57.718 52.632 22.15 22.15 43.53 4.09
2280 3578 0.093705 CGGCGCTTTTCGAGAAAGAG 59.906 55.000 7.64 16.38 41.67 2.85
2281 3579 1.897398 GCGGCGCTTTTCGAGAAAGA 61.897 55.000 26.86 0.00 41.67 2.52
2282 3580 1.509995 GCGGCGCTTTTCGAGAAAG 60.510 57.895 26.86 12.76 41.67 2.62
2283 3581 1.959226 AGCGGCGCTTTTCGAGAAA 60.959 52.632 31.35 0.00 41.67 2.52
2284 3582 2.357034 AGCGGCGCTTTTCGAGAA 60.357 55.556 31.35 0.00 41.67 2.87
2285 3583 2.835701 ATCAGCGGCGCTTTTCGAGA 62.836 55.000 34.51 24.94 41.67 4.04
2286 3584 1.145759 TATCAGCGGCGCTTTTCGAG 61.146 55.000 34.51 20.13 41.67 4.04
2287 3585 1.145759 CTATCAGCGGCGCTTTTCGA 61.146 55.000 34.51 26.12 41.67 3.71
2288 3586 1.145759 TCTATCAGCGGCGCTTTTCG 61.146 55.000 34.51 21.35 36.40 3.46
2289 3587 0.579156 CTCTATCAGCGGCGCTTTTC 59.421 55.000 34.51 1.57 36.40 2.29
2290 3588 0.811616 CCTCTATCAGCGGCGCTTTT 60.812 55.000 34.51 24.03 36.40 2.27
2291 3589 1.227380 CCTCTATCAGCGGCGCTTT 60.227 57.895 34.51 24.42 36.40 3.51
2292 3590 1.107538 TACCTCTATCAGCGGCGCTT 61.108 55.000 34.51 22.09 36.40 4.68
2293 3591 1.107538 TTACCTCTATCAGCGGCGCT 61.108 55.000 31.35 31.35 40.77 5.92
2294 3592 0.664767 CTTACCTCTATCAGCGGCGC 60.665 60.000 26.86 26.86 0.00 6.53
2295 3593 0.669077 ACTTACCTCTATCAGCGGCG 59.331 55.000 0.51 0.51 0.00 6.46
2296 3594 2.351932 GCTACTTACCTCTATCAGCGGC 60.352 54.545 0.00 0.00 0.00 6.53
2297 3595 2.885266 TGCTACTTACCTCTATCAGCGG 59.115 50.000 0.00 0.00 0.00 5.52
2298 3596 3.566322 ACTGCTACTTACCTCTATCAGCG 59.434 47.826 0.00 0.00 0.00 5.18
2299 3597 5.335348 GCTACTGCTACTTACCTCTATCAGC 60.335 48.000 0.00 0.00 36.03 4.26
2300 3598 5.106869 CGCTACTGCTACTTACCTCTATCAG 60.107 48.000 0.00 0.00 36.97 2.90
2301 3599 4.755629 CGCTACTGCTACTTACCTCTATCA 59.244 45.833 0.00 0.00 36.97 2.15
2302 3600 4.756135 ACGCTACTGCTACTTACCTCTATC 59.244 45.833 0.00 0.00 36.97 2.08
2303 3601 4.716794 ACGCTACTGCTACTTACCTCTAT 58.283 43.478 0.00 0.00 36.97 1.98
2304 3602 4.148128 ACGCTACTGCTACTTACCTCTA 57.852 45.455 0.00 0.00 36.97 2.43
2305 3603 3.002038 ACGCTACTGCTACTTACCTCT 57.998 47.619 0.00 0.00 36.97 3.69
2306 3604 3.779271 AACGCTACTGCTACTTACCTC 57.221 47.619 0.00 0.00 36.97 3.85
2307 3605 3.762823 AGAAACGCTACTGCTACTTACCT 59.237 43.478 0.00 0.00 36.97 3.08
2308 3606 4.107363 AGAAACGCTACTGCTACTTACC 57.893 45.455 0.00 0.00 36.97 2.85
2309 3607 6.463483 AAAAGAAACGCTACTGCTACTTAC 57.537 37.500 0.00 0.00 36.97 2.34
2310 3608 8.592105 TTTAAAAGAAACGCTACTGCTACTTA 57.408 30.769 0.00 0.00 36.97 2.24
2311 3609 7.486802 TTTAAAAGAAACGCTACTGCTACTT 57.513 32.000 0.00 0.00 36.97 2.24
2312 3610 7.486802 TTTTAAAAGAAACGCTACTGCTACT 57.513 32.000 0.00 0.00 36.97 2.57
2313 3611 7.149176 GCTTTTTAAAAGAAACGCTACTGCTAC 60.149 37.037 20.14 0.00 36.97 3.58
2314 3612 6.854381 GCTTTTTAAAAGAAACGCTACTGCTA 59.146 34.615 20.14 0.00 36.97 3.49
2315 3613 5.685954 GCTTTTTAAAAGAAACGCTACTGCT 59.314 36.000 20.14 0.00 36.97 4.24
2316 3614 5.386019 CGCTTTTTAAAAGAAACGCTACTGC 60.386 40.000 20.14 1.41 33.21 4.40
2317 3615 5.386019 GCGCTTTTTAAAAGAAACGCTACTG 60.386 40.000 23.28 2.17 41.70 2.74
2318 3616 4.673761 GCGCTTTTTAAAAGAAACGCTACT 59.326 37.500 23.28 0.00 41.70 2.57
2319 3617 4.143680 GGCGCTTTTTAAAAGAAACGCTAC 60.144 41.667 26.58 15.43 44.17 3.58
2320 3618 3.976306 GGCGCTTTTTAAAAGAAACGCTA 59.024 39.130 26.58 2.98 44.17 4.26
2321 3619 2.792674 GGCGCTTTTTAAAAGAAACGCT 59.207 40.909 26.58 0.00 44.17 5.07
2322 3620 2.536393 TGGCGCTTTTTAAAAGAAACGC 59.464 40.909 22.83 22.83 44.02 4.84
2323 3621 3.794564 AGTGGCGCTTTTTAAAAGAAACG 59.205 39.130 20.14 14.56 0.00 3.60
2324 3622 4.550063 GCAGTGGCGCTTTTTAAAAGAAAC 60.550 41.667 20.14 11.37 0.00 2.78
2325 3623 3.553917 GCAGTGGCGCTTTTTAAAAGAAA 59.446 39.130 20.14 0.55 0.00 2.52
2326 3624 3.120041 GCAGTGGCGCTTTTTAAAAGAA 58.880 40.909 20.14 0.88 0.00 2.52
2327 3625 2.738135 GCAGTGGCGCTTTTTAAAAGA 58.262 42.857 20.14 0.00 0.00 2.52
2337 3635 5.103123 ATAGAAAAACTAAGCAGTGGCGCT 61.103 41.667 7.64 0.00 46.67 5.92
2338 3636 3.127030 ATAGAAAAACTAAGCAGTGGCGC 59.873 43.478 0.00 0.00 37.78 6.53
2339 3637 4.946784 ATAGAAAAACTAAGCAGTGGCG 57.053 40.909 0.00 0.00 37.78 5.69
2340 3638 7.946655 AAAAATAGAAAAACTAAGCAGTGGC 57.053 32.000 0.00 0.00 34.36 5.01
2361 3659 9.255304 ACGAAAATAAGCTGCAATTAAGAAAAA 57.745 25.926 1.02 0.00 0.00 1.94
2362 3660 8.810652 ACGAAAATAAGCTGCAATTAAGAAAA 57.189 26.923 1.02 0.00 0.00 2.29
2363 3661 7.270365 CGACGAAAATAAGCTGCAATTAAGAAA 59.730 33.333 1.02 0.00 0.00 2.52
2364 3662 6.740905 CGACGAAAATAAGCTGCAATTAAGAA 59.259 34.615 1.02 0.00 0.00 2.52
2365 3663 6.128391 ACGACGAAAATAAGCTGCAATTAAGA 60.128 34.615 0.00 0.00 0.00 2.10
2366 3664 6.021596 ACGACGAAAATAAGCTGCAATTAAG 58.978 36.000 0.00 0.08 0.00 1.85
2367 3665 5.933790 ACGACGAAAATAAGCTGCAATTAA 58.066 33.333 0.00 0.00 0.00 1.40
2368 3666 5.539582 ACGACGAAAATAAGCTGCAATTA 57.460 34.783 0.00 0.00 0.00 1.40
2369 3667 4.419522 ACGACGAAAATAAGCTGCAATT 57.580 36.364 0.00 0.00 0.00 2.32
2370 3668 5.734855 ATACGACGAAAATAAGCTGCAAT 57.265 34.783 0.00 0.00 0.00 3.56
2371 3669 5.539582 AATACGACGAAAATAAGCTGCAA 57.460 34.783 0.00 0.00 0.00 4.08
2372 3670 5.106869 ACAAATACGACGAAAATAAGCTGCA 60.107 36.000 0.00 0.00 0.00 4.41
2373 3671 5.321516 ACAAATACGACGAAAATAAGCTGC 58.678 37.500 0.00 0.00 0.00 5.25
2453 3751 8.397906 GCAACATGTGTTCACACTATTGTATAT 58.602 33.333 11.30 0.00 46.55 0.86
2454 3752 7.148323 GGCAACATGTGTTCACACTATTGTATA 60.148 37.037 11.30 0.00 46.55 1.47
2455 3753 6.349280 GGCAACATGTGTTCACACTATTGTAT 60.349 38.462 11.30 0.00 46.55 2.29
2456 3754 5.049060 GGCAACATGTGTTCACACTATTGTA 60.049 40.000 11.30 0.00 46.55 2.41
2457 3755 4.261572 GGCAACATGTGTTCACACTATTGT 60.262 41.667 11.30 6.02 46.55 2.71
2458 3756 4.022935 AGGCAACATGTGTTCACACTATTG 60.023 41.667 11.30 12.54 43.47 1.90
2459 3757 4.144297 AGGCAACATGTGTTCACACTATT 58.856 39.130 11.30 0.91 43.47 1.73
2460 3758 3.754965 AGGCAACATGTGTTCACACTAT 58.245 40.909 11.30 1.29 43.47 2.12
2461 3759 3.207265 AGGCAACATGTGTTCACACTA 57.793 42.857 11.30 0.00 43.47 2.74
2462 3760 2.057137 AGGCAACATGTGTTCACACT 57.943 45.000 11.30 0.00 43.47 3.55
2463 3761 2.098934 TGAAGGCAACATGTGTTCACAC 59.901 45.455 7.82 2.93 43.40 3.82
2464 3762 2.098934 GTGAAGGCAACATGTGTTCACA 59.901 45.455 24.60 8.09 44.18 3.58
2465 3763 2.358898 AGTGAAGGCAACATGTGTTCAC 59.641 45.455 23.31 23.31 44.80 3.18
2466 3764 2.653726 AGTGAAGGCAACATGTGTTCA 58.346 42.857 0.00 4.16 35.83 3.18
2467 3765 3.066621 TCAAGTGAAGGCAACATGTGTTC 59.933 43.478 0.00 1.39 35.83 3.18
2468 3766 3.023119 TCAAGTGAAGGCAACATGTGTT 58.977 40.909 0.00 0.00 39.12 3.32
2469 3767 2.653726 TCAAGTGAAGGCAACATGTGT 58.346 42.857 0.00 0.00 41.41 3.72
2470 3768 3.374745 GTTCAAGTGAAGGCAACATGTG 58.625 45.455 0.00 0.00 41.41 3.21
2471 3769 2.362077 GGTTCAAGTGAAGGCAACATGT 59.638 45.455 0.00 0.00 41.41 3.21
2472 3770 2.624838 AGGTTCAAGTGAAGGCAACATG 59.375 45.455 0.00 0.00 41.41 3.21
2473 3771 2.949447 AGGTTCAAGTGAAGGCAACAT 58.051 42.857 0.00 0.00 41.41 2.71
2474 3772 2.435372 AGGTTCAAGTGAAGGCAACA 57.565 45.000 0.00 0.00 41.41 3.33
2475 3773 4.082733 GGATTAGGTTCAAGTGAAGGCAAC 60.083 45.833 0.00 0.00 34.27 4.17
2476 3774 4.079253 GGATTAGGTTCAAGTGAAGGCAA 58.921 43.478 0.00 0.00 34.27 4.52
2477 3775 3.073798 TGGATTAGGTTCAAGTGAAGGCA 59.926 43.478 0.00 0.00 34.27 4.75
2478 3776 3.686016 TGGATTAGGTTCAAGTGAAGGC 58.314 45.455 0.00 0.00 34.27 4.35
2479 3777 5.749462 AGATGGATTAGGTTCAAGTGAAGG 58.251 41.667 0.00 0.00 34.27 3.46
2480 3778 7.391554 TGAAAGATGGATTAGGTTCAAGTGAAG 59.608 37.037 0.00 0.00 34.27 3.02
2481 3779 7.174946 GTGAAAGATGGATTAGGTTCAAGTGAA 59.825 37.037 0.00 0.00 0.00 3.18
2482 3780 6.655003 GTGAAAGATGGATTAGGTTCAAGTGA 59.345 38.462 0.00 0.00 0.00 3.41
2483 3781 6.430925 TGTGAAAGATGGATTAGGTTCAAGTG 59.569 38.462 0.00 0.00 0.00 3.16
2484 3782 6.431234 GTGTGAAAGATGGATTAGGTTCAAGT 59.569 38.462 0.00 0.00 0.00 3.16
2485 3783 6.656693 AGTGTGAAAGATGGATTAGGTTCAAG 59.343 38.462 0.00 0.00 0.00 3.02
2486 3784 6.430925 CAGTGTGAAAGATGGATTAGGTTCAA 59.569 38.462 0.00 0.00 0.00 2.69
2487 3785 5.939883 CAGTGTGAAAGATGGATTAGGTTCA 59.060 40.000 0.00 0.00 0.00 3.18
2488 3786 5.940470 ACAGTGTGAAAGATGGATTAGGTTC 59.060 40.000 0.00 0.00 0.00 3.62
2489 3787 5.880901 ACAGTGTGAAAGATGGATTAGGTT 58.119 37.500 0.00 0.00 0.00 3.50
2490 3788 5.505181 ACAGTGTGAAAGATGGATTAGGT 57.495 39.130 0.00 0.00 0.00 3.08
2491 3789 5.707298 ACAACAGTGTGAAAGATGGATTAGG 59.293 40.000 0.00 0.00 36.31 2.69
2492 3790 6.808008 ACAACAGTGTGAAAGATGGATTAG 57.192 37.500 0.00 0.00 36.31 1.73
2495 3793 9.547753 GTATATACAACAGTGTGAAAGATGGAT 57.452 33.333 8.05 0.00 38.82 3.41
2496 3794 8.758829 AGTATATACAACAGTGTGAAAGATGGA 58.241 33.333 15.18 0.00 38.82 3.41
2497 3795 8.948631 AGTATATACAACAGTGTGAAAGATGG 57.051 34.615 15.18 0.00 38.82 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.