Multiple sequence alignment - TraesCS7A01G465900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G465900 chr7A 100.000 1602 0 0 1 1602 662177520 662175919 0.000000e+00 2959.0
1 TraesCS7A01G465900 chr7A 100.000 557 0 0 1981 2537 662175540 662174984 0.000000e+00 1029.0
2 TraesCS7A01G465900 chr7A 86.582 708 73 6 788 1492 663494487 663495175 0.000000e+00 761.0
3 TraesCS7A01G465900 chr7A 83.357 697 70 11 790 1481 663490456 663491111 1.000000e-168 603.0
4 TraesCS7A01G465900 chr7A 94.958 119 3 2 1981 2098 663805717 663805833 1.550000e-42 183.0
5 TraesCS7A01G465900 chr7A 81.726 197 18 8 2100 2283 663495288 663495479 5.650000e-32 148.0
6 TraesCS7A01G465900 chr7A 86.885 122 13 3 2111 2232 663491242 663491360 1.580000e-27 134.0
7 TraesCS7A01G465900 chr7D 94.141 990 56 2 583 1571 572851370 572850382 0.000000e+00 1506.0
8 TraesCS7A01G465900 chr7D 87.535 706 67 7 788 1492 573475015 573475700 0.000000e+00 797.0
9 TraesCS7A01G465900 chr7D 84.244 787 94 11 790 1566 573620295 573621061 0.000000e+00 739.0
10 TraesCS7A01G465900 chr7D 87.542 602 69 2 891 1492 573617940 573618535 0.000000e+00 691.0
11 TraesCS7A01G465900 chr7D 93.282 387 20 6 2095 2476 572850395 572850010 1.320000e-157 566.0
12 TraesCS7A01G465900 chr7D 94.025 318 16 3 269 585 115140774 115141089 1.770000e-131 479.0
13 TraesCS7A01G465900 chr7D 92.896 183 12 1 68 250 572851560 572851379 5.380000e-67 265.0
14 TraesCS7A01G465900 chr7D 87.701 187 20 3 2100 2286 573475812 573475995 5.500000e-52 215.0
15 TraesCS7A01G465900 chr7D 85.294 136 11 6 2114 2248 573621093 573621220 5.690000e-27 132.0
16 TraesCS7A01G465900 chr7B 93.205 986 65 2 587 1571 630663127 630662143 0.000000e+00 1448.0
17 TraesCS7A01G465900 chr7B 85.674 705 73 10 788 1492 632335371 632336047 0.000000e+00 717.0
18 TraesCS7A01G465900 chr7B 85.411 706 83 12 790 1492 632331046 632331734 0.000000e+00 715.0
19 TraesCS7A01G465900 chr7B 93.464 306 14 5 2095 2398 630662156 630661855 1.380000e-122 449.0
20 TraesCS7A01G465900 chr7B 93.909 197 12 0 70 266 630663328 630663132 5.310000e-77 298.0
21 TraesCS7A01G465900 chr7B 83.854 192 15 8 2107 2286 632331853 632332040 4.340000e-38 169.0
22 TraesCS7A01G465900 chr7B 82.667 150 21 5 2100 2248 632336153 632336298 7.370000e-26 128.0
23 TraesCS7A01G465900 chr3A 93.750 320 16 4 269 587 181668817 181669133 6.350000e-131 477.0
24 TraesCS7A01G465900 chr3A 92.812 320 20 3 269 587 553946028 553946345 6.390000e-126 460.0
25 TraesCS7A01G465900 chr3A 92.570 323 19 5 269 589 731579343 731579024 2.300000e-125 459.0
26 TraesCS7A01G465900 chr3A 96.639 119 2 2 1981 2098 552484293 552484176 1.990000e-46 196.0
27 TraesCS7A01G465900 chr3A 100.000 37 0 0 1566 1602 552484356 552484320 4.530000e-08 69.4
28 TraesCS7A01G465900 chr3D 93.478 322 17 4 269 589 601009703 601010021 2.280000e-130 475.0
29 TraesCS7A01G465900 chr3D 93.168 322 18 4 269 589 601035508 601035826 1.060000e-128 470.0
30 TraesCS7A01G465900 chr3D 92.547 322 20 4 269 589 601018648 601018966 2.300000e-125 459.0
31 TraesCS7A01G465900 chr2A 92.879 323 19 4 269 590 697474236 697473917 1.370000e-127 466.0
32 TraesCS7A01G465900 chr5A 93.082 318 18 4 269 585 88462041 88462355 1.780000e-126 462.0
33 TraesCS7A01G465900 chr5A 95.763 118 4 1 1981 2098 437917907 437917791 3.330000e-44 189.0
34 TraesCS7A01G465900 chr4A 95.833 120 4 1 1981 2100 13771045 13770927 2.580000e-45 193.0
35 TraesCS7A01G465900 chr4A 94.068 118 6 1 1981 2098 691556623 691556739 7.210000e-41 178.0
36 TraesCS7A01G465900 chr6B 95.798 119 2 3 1981 2098 702508288 702508172 3.330000e-44 189.0
37 TraesCS7A01G465900 chr4B 94.958 119 5 1 1981 2099 642772686 642772569 4.310000e-43 185.0
38 TraesCS7A01G465900 chr3B 90.756 119 9 2 1981 2099 376610678 376610562 9.400000e-35 158.0
39 TraesCS7A01G465900 chr1A 90.323 124 5 2 1981 2098 13965193 13965315 3.380000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G465900 chr7A 662174984 662177520 2536 True 1994.000000 2959 100.000000 1 2537 2 chr7A.!!$R1 2536
1 TraesCS7A01G465900 chr7A 663490456 663495479 5023 False 411.500000 761 84.637500 788 2283 4 chr7A.!!$F2 1495
2 TraesCS7A01G465900 chr7D 572850010 572851560 1550 True 779.000000 1506 93.439667 68 2476 3 chr7D.!!$R1 2408
3 TraesCS7A01G465900 chr7D 573617940 573621220 3280 False 520.666667 739 85.693333 790 2248 3 chr7D.!!$F3 1458
4 TraesCS7A01G465900 chr7D 573475015 573475995 980 False 506.000000 797 87.618000 788 2286 2 chr7D.!!$F2 1498
5 TraesCS7A01G465900 chr7B 630661855 630663328 1473 True 731.666667 1448 93.526000 70 2398 3 chr7B.!!$R1 2328
6 TraesCS7A01G465900 chr7B 632331046 632336298 5252 False 432.250000 717 84.401500 788 2286 4 chr7B.!!$F1 1498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
532 533 0.244721 GCCTCCACTCACAAAATGCC 59.755 55.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2517 5833 0.105964 AGCCACTCGTTTGCTACACA 59.894 50.0 0.0 0.0 32.56 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.418022 TGTGATTCACAAGCAGGCA 57.582 47.368 16.95 0.00 41.69 4.75
28 29 1.689984 TGTGATTCACAAGCAGGCAA 58.310 45.000 16.95 0.00 41.69 4.52
31 32 2.035066 GTGATTCACAAGCAGGCAAAGT 59.965 45.455 11.93 0.00 34.08 2.66
32 33 2.034939 TGATTCACAAGCAGGCAAAGTG 59.965 45.455 0.00 0.00 0.00 3.16
33 34 1.761449 TTCACAAGCAGGCAAAGTGA 58.239 45.000 8.64 8.64 37.43 3.41
34 35 1.761449 TCACAAGCAGGCAAAGTGAA 58.239 45.000 9.82 0.00 36.39 3.18
35 36 2.098614 TCACAAGCAGGCAAAGTGAAA 58.901 42.857 9.82 0.00 36.39 2.69
36 37 2.694628 TCACAAGCAGGCAAAGTGAAAT 59.305 40.909 9.82 0.00 36.39 2.17
38 39 3.983344 CACAAGCAGGCAAAGTGAAATAC 59.017 43.478 5.26 0.00 32.14 1.89
58 59 9.810545 GAAATACTTTCTTGAGATAGTACTGCT 57.189 33.333 5.39 2.43 39.92 4.24
61 62 9.810545 ATACTTTCTTGAGATAGTACTGCTTTC 57.189 33.333 5.39 0.00 39.92 2.62
62 63 7.100409 ACTTTCTTGAGATAGTACTGCTTTCC 58.900 38.462 5.39 0.00 35.17 3.13
63 64 6.859112 TTCTTGAGATAGTACTGCTTTCCT 57.141 37.500 5.39 0.00 0.00 3.36
65 66 4.902443 TGAGATAGTACTGCTTTCCTCG 57.098 45.455 5.39 0.00 0.00 4.63
66 67 3.632604 TGAGATAGTACTGCTTTCCTCGG 59.367 47.826 5.39 0.00 0.00 4.63
67 68 3.633065 GAGATAGTACTGCTTTCCTCGGT 59.367 47.826 5.39 0.00 0.00 4.69
68 69 4.024670 AGATAGTACTGCTTTCCTCGGTT 58.975 43.478 5.39 0.00 0.00 4.44
106 107 5.555966 TGCACATAAGACACAACCTTCATA 58.444 37.500 0.00 0.00 0.00 2.15
156 157 4.200838 TGGAGAATGAAACGAGCATGTA 57.799 40.909 0.00 0.00 0.00 2.29
173 174 4.446371 CATGTAGAGAGATTTGGTGACCC 58.554 47.826 0.00 0.00 0.00 4.46
180 181 2.742589 GAGATTTGGTGACCCGTTTCTC 59.257 50.000 0.00 2.30 0.00 2.87
274 275 8.773033 ATAATCTTAATGAAAATGCACTCCCT 57.227 30.769 0.00 0.00 0.00 4.20
275 276 7.486407 AATCTTAATGAAAATGCACTCCCTT 57.514 32.000 0.00 0.00 0.00 3.95
277 278 6.248433 TCTTAATGAAAATGCACTCCCTTCT 58.752 36.000 0.00 0.00 0.00 2.85
278 279 6.721208 TCTTAATGAAAATGCACTCCCTTCTT 59.279 34.615 0.00 0.00 0.00 2.52
279 280 5.813513 AATGAAAATGCACTCCCTTCTTT 57.186 34.783 0.00 0.00 0.00 2.52
281 282 5.200368 TGAAAATGCACTCCCTTCTTTTC 57.800 39.130 9.77 9.77 34.68 2.29
282 283 3.923017 AAATGCACTCCCTTCTTTTCG 57.077 42.857 0.00 0.00 0.00 3.46
283 284 1.826385 ATGCACTCCCTTCTTTTCGG 58.174 50.000 0.00 0.00 0.00 4.30
284 285 0.472471 TGCACTCCCTTCTTTTCGGT 59.528 50.000 0.00 0.00 0.00 4.69
286 287 1.954382 GCACTCCCTTCTTTTCGGTTT 59.046 47.619 0.00 0.00 0.00 3.27
288 289 3.756963 GCACTCCCTTCTTTTCGGTTTAT 59.243 43.478 0.00 0.00 0.00 1.40
289 290 4.379499 GCACTCCCTTCTTTTCGGTTTATG 60.379 45.833 0.00 0.00 0.00 1.90
291 292 5.122396 CACTCCCTTCTTTTCGGTTTATGAG 59.878 44.000 0.00 0.00 0.00 2.90
292 293 4.585879 TCCCTTCTTTTCGGTTTATGAGG 58.414 43.478 0.00 0.00 0.00 3.86
293 294 3.128764 CCCTTCTTTTCGGTTTATGAGGC 59.871 47.826 0.00 0.00 0.00 4.70
294 295 4.010349 CCTTCTTTTCGGTTTATGAGGCT 58.990 43.478 0.00 0.00 0.00 4.58
295 296 4.459337 CCTTCTTTTCGGTTTATGAGGCTT 59.541 41.667 0.00 0.00 0.00 4.35
296 297 5.646360 CCTTCTTTTCGGTTTATGAGGCTTA 59.354 40.000 0.00 0.00 0.00 3.09
297 298 6.318900 CCTTCTTTTCGGTTTATGAGGCTTAT 59.681 38.462 0.00 0.00 0.00 1.73
299 300 7.696992 TCTTTTCGGTTTATGAGGCTTATTT 57.303 32.000 0.00 0.00 0.00 1.40
300 301 7.758495 TCTTTTCGGTTTATGAGGCTTATTTC 58.242 34.615 0.00 0.00 0.00 2.17
301 302 7.392113 TCTTTTCGGTTTATGAGGCTTATTTCA 59.608 33.333 0.00 0.00 0.00 2.69
302 303 7.455641 TTTCGGTTTATGAGGCTTATTTCAA 57.544 32.000 0.00 0.00 0.00 2.69
304 305 6.177610 TCGGTTTATGAGGCTTATTTCAACT 58.822 36.000 0.00 0.00 0.00 3.16
305 306 6.657541 TCGGTTTATGAGGCTTATTTCAACTT 59.342 34.615 0.00 0.00 0.00 2.66
306 307 7.175990 TCGGTTTATGAGGCTTATTTCAACTTT 59.824 33.333 0.00 0.00 0.00 2.66
307 308 7.812669 CGGTTTATGAGGCTTATTTCAACTTTT 59.187 33.333 0.00 0.00 0.00 2.27
308 309 9.489084 GGTTTATGAGGCTTATTTCAACTTTTT 57.511 29.630 0.00 0.00 0.00 1.94
338 339 4.696479 TCAATTTAGAGGGCTCATCTCC 57.304 45.455 0.00 0.00 31.96 3.71
339 340 4.040047 TCAATTTAGAGGGCTCATCTCCA 58.960 43.478 0.00 0.00 31.96 3.86
341 342 4.906747 ATTTAGAGGGCTCATCTCCATC 57.093 45.455 0.00 0.00 34.83 3.51
343 344 2.014010 AGAGGGCTCATCTCCATCTC 57.986 55.000 0.00 0.00 40.33 2.75
344 345 1.219980 AGAGGGCTCATCTCCATCTCA 59.780 52.381 0.00 0.00 40.33 3.27
346 347 2.638855 GAGGGCTCATCTCCATCTCATT 59.361 50.000 0.00 0.00 32.13 2.57
347 348 3.054576 AGGGCTCATCTCCATCTCATTT 58.945 45.455 0.00 0.00 0.00 2.32
348 349 3.462579 AGGGCTCATCTCCATCTCATTTT 59.537 43.478 0.00 0.00 0.00 1.82
350 351 5.133322 AGGGCTCATCTCCATCTCATTTTTA 59.867 40.000 0.00 0.00 0.00 1.52
351 352 5.472820 GGGCTCATCTCCATCTCATTTTTAG 59.527 44.000 0.00 0.00 0.00 1.85
352 353 6.060788 GGCTCATCTCCATCTCATTTTTAGT 58.939 40.000 0.00 0.00 0.00 2.24
353 354 6.545298 GGCTCATCTCCATCTCATTTTTAGTT 59.455 38.462 0.00 0.00 0.00 2.24
355 356 8.465201 GCTCATCTCCATCTCATTTTTAGTTTT 58.535 33.333 0.00 0.00 0.00 2.43
357 358 9.519191 TCATCTCCATCTCATTTTTAGTTTTCA 57.481 29.630 0.00 0.00 0.00 2.69
364 365 8.980610 CATCTCATTTTTAGTTTTCAATGTGCA 58.019 29.630 0.00 0.00 0.00 4.57
365 366 9.715121 ATCTCATTTTTAGTTTTCAATGTGCAT 57.285 25.926 0.00 0.00 0.00 3.96
366 367 9.545105 TCTCATTTTTAGTTTTCAATGTGCATT 57.455 25.926 0.00 0.00 0.00 3.56
376 377 8.284693 AGTTTTCAATGTGCATTAAATCTTTGC 58.715 29.630 0.00 0.00 36.91 3.68
378 379 7.908827 TTCAATGTGCATTAAATCTTTGCAT 57.091 28.000 4.14 0.00 46.90 3.96
379 380 7.297229 TCAATGTGCATTAAATCTTTGCATG 57.703 32.000 4.14 0.11 46.90 4.06
380 381 5.728351 ATGTGCATTAAATCTTTGCATGC 57.272 34.783 11.82 11.82 46.90 4.06
381 382 4.566987 TGTGCATTAAATCTTTGCATGCA 58.433 34.783 18.46 18.46 46.90 3.96
382 383 4.995487 TGTGCATTAAATCTTTGCATGCAA 59.005 33.333 28.80 28.80 46.90 4.08
383 384 5.469084 TGTGCATTAAATCTTTGCATGCAAA 59.531 32.000 36.34 36.34 46.90 3.68
384 385 6.017357 TGTGCATTAAATCTTTGCATGCAAAA 60.017 30.769 37.36 28.92 46.90 2.44
385 386 7.024768 GTGCATTAAATCTTTGCATGCAAAAT 58.975 30.769 37.36 29.58 46.90 1.82
386 387 7.539366 GTGCATTAAATCTTTGCATGCAAAATT 59.461 29.630 37.36 32.16 46.90 1.82
387 388 8.727910 TGCATTAAATCTTTGCATGCAAAATTA 58.272 25.926 37.36 30.82 44.07 1.40
393 394 7.605410 ATCTTTGCATGCAAAATTAAAGAGG 57.395 32.000 37.36 25.25 44.07 3.69
394 395 6.757237 TCTTTGCATGCAAAATTAAAGAGGA 58.243 32.000 37.36 26.74 44.07 3.71
395 396 7.215789 TCTTTGCATGCAAAATTAAAGAGGAA 58.784 30.769 37.36 17.41 44.07 3.36
397 398 5.851720 TGCATGCAAAATTAAAGAGGAACA 58.148 33.333 20.30 0.00 0.00 3.18
398 399 5.695816 TGCATGCAAAATTAAAGAGGAACAC 59.304 36.000 20.30 0.00 0.00 3.32
399 400 5.695816 GCATGCAAAATTAAAGAGGAACACA 59.304 36.000 14.21 0.00 0.00 3.72
400 401 6.346838 GCATGCAAAATTAAAGAGGAACACAC 60.347 38.462 14.21 0.00 0.00 3.82
401 402 5.596845 TGCAAAATTAAAGAGGAACACACC 58.403 37.500 0.00 0.00 0.00 4.16
402 403 5.127845 TGCAAAATTAAAGAGGAACACACCA 59.872 36.000 0.00 0.00 0.00 4.17
403 404 6.045955 GCAAAATTAAAGAGGAACACACCAA 58.954 36.000 0.00 0.00 0.00 3.67
404 405 6.705825 GCAAAATTAAAGAGGAACACACCAAT 59.294 34.615 0.00 0.00 0.00 3.16
405 406 7.307337 GCAAAATTAAAGAGGAACACACCAATG 60.307 37.037 0.00 0.00 0.00 2.82
407 408 2.363306 AAGAGGAACACACCAATGCA 57.637 45.000 0.00 0.00 0.00 3.96
409 410 2.165167 AGAGGAACACACCAATGCATG 58.835 47.619 0.00 0.00 0.00 4.06
410 411 1.888512 GAGGAACACACCAATGCATGT 59.111 47.619 0.00 0.00 0.00 3.21
411 412 3.081061 GAGGAACACACCAATGCATGTA 58.919 45.455 0.00 0.00 0.00 2.29
412 413 3.495331 AGGAACACACCAATGCATGTAA 58.505 40.909 0.00 0.00 0.00 2.41
413 414 4.088634 AGGAACACACCAATGCATGTAAT 58.911 39.130 0.00 0.00 0.00 1.89
431 432 8.809159 CATGTAATGTTCCTACTCATCTAGTG 57.191 38.462 0.00 0.00 40.20 2.74
432 433 7.348080 TGTAATGTTCCTACTCATCTAGTGG 57.652 40.000 0.00 0.00 39.39 4.00
434 435 3.031736 TGTTCCTACTCATCTAGTGGCC 58.968 50.000 0.00 0.00 39.39 5.36
435 436 3.031736 GTTCCTACTCATCTAGTGGCCA 58.968 50.000 0.00 0.00 39.39 5.36
436 437 3.398318 TCCTACTCATCTAGTGGCCAA 57.602 47.619 7.24 0.00 39.39 4.52
437 438 3.300388 TCCTACTCATCTAGTGGCCAAG 58.700 50.000 7.24 1.33 39.39 3.61
440 441 1.842562 ACTCATCTAGTGGCCAAGCAT 59.157 47.619 7.24 0.00 36.93 3.79
441 442 2.219458 CTCATCTAGTGGCCAAGCATG 58.781 52.381 7.24 7.98 0.00 4.06
442 443 0.666913 CATCTAGTGGCCAAGCATGC 59.333 55.000 7.24 10.51 0.00 4.06
443 444 0.256752 ATCTAGTGGCCAAGCATGCA 59.743 50.000 21.98 0.00 0.00 3.96
444 445 0.256752 TCTAGTGGCCAAGCATGCAT 59.743 50.000 21.98 4.57 0.00 3.96
447 448 0.323633 AGTGGCCAAGCATGCATACA 60.324 50.000 21.98 8.42 0.00 2.29
506 507 8.953368 ATTGGGGTAGTTTTATAAAGTACGAG 57.047 34.615 9.72 0.00 0.00 4.18
507 508 7.716799 TGGGGTAGTTTTATAAAGTACGAGA 57.283 36.000 9.72 0.00 0.00 4.04
509 510 9.420118 TGGGGTAGTTTTATAAAGTACGAGATA 57.580 33.333 9.72 0.00 0.00 1.98
519 520 7.956328 ATAAAGTACGAGATATATGCCTCCA 57.044 36.000 0.00 0.00 0.00 3.86
520 521 5.646577 AAGTACGAGATATATGCCTCCAC 57.353 43.478 0.00 0.00 0.00 4.02
521 522 4.924625 AGTACGAGATATATGCCTCCACT 58.075 43.478 0.00 0.00 0.00 4.00
523 524 3.767711 ACGAGATATATGCCTCCACTCA 58.232 45.455 0.00 0.00 0.00 3.41
524 525 3.508012 ACGAGATATATGCCTCCACTCAC 59.492 47.826 0.00 0.00 0.00 3.51
528 529 6.252599 AGATATATGCCTCCACTCACAAAA 57.747 37.500 0.00 0.00 0.00 2.44
529 530 6.845908 AGATATATGCCTCCACTCACAAAAT 58.154 36.000 0.00 0.00 0.00 1.82
532 533 0.244721 GCCTCCACTCACAAAATGCC 59.755 55.000 0.00 0.00 0.00 4.40
533 534 1.915141 CCTCCACTCACAAAATGCCT 58.085 50.000 0.00 0.00 0.00 4.75
534 535 2.242043 CCTCCACTCACAAAATGCCTT 58.758 47.619 0.00 0.00 0.00 4.35
535 536 2.029649 CCTCCACTCACAAAATGCCTTG 60.030 50.000 0.00 0.00 0.00 3.61
537 538 1.688197 CCACTCACAAAATGCCTTGGT 59.312 47.619 0.00 0.00 0.00 3.67
538 539 2.102925 CCACTCACAAAATGCCTTGGTT 59.897 45.455 0.00 0.00 0.00 3.67
540 541 3.030291 ACTCACAAAATGCCTTGGTTGA 58.970 40.909 0.00 0.00 0.00 3.18
541 542 3.642848 ACTCACAAAATGCCTTGGTTGAT 59.357 39.130 0.00 0.00 0.00 2.57
542 543 3.991773 CTCACAAAATGCCTTGGTTGATG 59.008 43.478 0.00 0.00 0.00 3.07
543 544 3.640498 TCACAAAATGCCTTGGTTGATGA 59.360 39.130 0.00 0.00 0.00 2.92
546 547 4.529377 ACAAAATGCCTTGGTTGATGAGAT 59.471 37.500 0.00 0.00 0.00 2.75
547 548 5.012354 ACAAAATGCCTTGGTTGATGAGATT 59.988 36.000 0.00 0.00 0.00 2.40
548 549 5.750352 AAATGCCTTGGTTGATGAGATTT 57.250 34.783 0.00 0.00 0.00 2.17
550 551 3.765381 TGCCTTGGTTGATGAGATTTGA 58.235 40.909 0.00 0.00 0.00 2.69
551 552 3.760151 TGCCTTGGTTGATGAGATTTGAG 59.240 43.478 0.00 0.00 0.00 3.02
552 553 4.012374 GCCTTGGTTGATGAGATTTGAGA 58.988 43.478 0.00 0.00 0.00 3.27
554 555 5.126707 GCCTTGGTTGATGAGATTTGAGATT 59.873 40.000 0.00 0.00 0.00 2.40
557 558 7.094075 CCTTGGTTGATGAGATTTGAGATTTGA 60.094 37.037 0.00 0.00 0.00 2.69
558 559 7.387119 TGGTTGATGAGATTTGAGATTTGAG 57.613 36.000 0.00 0.00 0.00 3.02
559 560 6.127814 TGGTTGATGAGATTTGAGATTTGAGC 60.128 38.462 0.00 0.00 0.00 4.26
560 561 6.264088 GTTGATGAGATTTGAGATTTGAGCC 58.736 40.000 0.00 0.00 0.00 4.70
561 562 5.752650 TGATGAGATTTGAGATTTGAGCCT 58.247 37.500 0.00 0.00 0.00 4.58
562 563 6.185511 TGATGAGATTTGAGATTTGAGCCTT 58.814 36.000 0.00 0.00 0.00 4.35
564 565 7.997223 TGATGAGATTTGAGATTTGAGCCTTAT 59.003 33.333 0.00 0.00 0.00 1.73
565 566 9.499479 GATGAGATTTGAGATTTGAGCCTTATA 57.501 33.333 0.00 0.00 0.00 0.98
566 567 9.857656 ATGAGATTTGAGATTTGAGCCTTATAA 57.142 29.630 0.00 0.00 0.00 0.98
567 568 9.685276 TGAGATTTGAGATTTGAGCCTTATAAA 57.315 29.630 0.00 0.00 0.00 1.40
568 569 9.943163 GAGATTTGAGATTTGAGCCTTATAAAC 57.057 33.333 0.00 0.00 0.00 2.01
569 570 8.907885 AGATTTGAGATTTGAGCCTTATAAACC 58.092 33.333 0.00 0.00 0.00 3.27
570 571 6.677781 TTGAGATTTGAGCCTTATAAACCG 57.322 37.500 0.00 0.00 0.00 4.44
572 573 5.104693 TGAGATTTGAGCCTTATAAACCGGA 60.105 40.000 9.46 0.00 0.00 5.14
573 574 5.751586 AGATTTGAGCCTTATAAACCGGAA 58.248 37.500 9.46 0.00 0.00 4.30
574 575 6.184789 AGATTTGAGCCTTATAAACCGGAAA 58.815 36.000 9.46 0.00 0.00 3.13
575 576 5.890424 TTTGAGCCTTATAAACCGGAAAG 57.110 39.130 9.46 3.38 0.00 2.62
577 578 3.520317 TGAGCCTTATAAACCGGAAAGGA 59.480 43.478 9.46 0.00 45.00 3.36
578 579 4.127907 GAGCCTTATAAACCGGAAAGGAG 58.872 47.826 9.46 0.00 45.00 3.69
579 580 3.118000 AGCCTTATAAACCGGAAAGGAGG 60.118 47.826 9.46 9.29 45.00 4.30
580 581 3.816994 CCTTATAAACCGGAAAGGAGGG 58.183 50.000 9.46 0.00 45.00 4.30
581 582 3.457012 CCTTATAAACCGGAAAGGAGGGA 59.543 47.826 9.46 0.00 45.00 4.20
589 590 2.354805 CCGGAAAGGAGGGAGTACTTTG 60.355 54.545 0.00 0.00 45.00 2.77
596 597 6.511017 AAGGAGGGAGTACTTTGTAAGTTT 57.489 37.500 0.00 0.00 42.81 2.66
816 4061 7.866393 CGAACGACTTGGACTTCCTATATAAAT 59.134 37.037 0.00 0.00 36.82 1.40
818 4063 7.442656 ACGACTTGGACTTCCTATATAAATGG 58.557 38.462 0.00 0.00 36.82 3.16
819 4064 7.289317 ACGACTTGGACTTCCTATATAAATGGA 59.711 37.037 0.00 0.00 36.82 3.41
820 4065 7.815068 CGACTTGGACTTCCTATATAAATGGAG 59.185 40.741 0.00 0.00 36.82 3.86
822 4067 6.374417 TGGACTTCCTATATAAATGGAGCC 57.626 41.667 0.00 0.00 36.82 4.70
824 4069 6.562608 TGGACTTCCTATATAAATGGAGCCTT 59.437 38.462 0.00 0.00 36.82 4.35
825 4070 6.881602 GGACTTCCTATATAAATGGAGCCTTG 59.118 42.308 0.00 0.00 0.00 3.61
826 4071 6.241645 ACTTCCTATATAAATGGAGCCTTGC 58.758 40.000 0.00 0.00 0.00 4.01
827 4072 5.841267 TCCTATATAAATGGAGCCTTGCA 57.159 39.130 0.00 0.00 0.00 4.08
833 4078 0.251073 AATGGAGCCTTGCATTTGGC 59.749 50.000 15.40 15.40 41.91 4.52
848 4093 5.630061 GCATTTGGCATTTTTATCAACACC 58.370 37.500 0.00 0.00 43.97 4.16
849 4094 5.412286 GCATTTGGCATTTTTATCAACACCT 59.588 36.000 0.00 0.00 43.97 4.00
852 4097 3.260380 TGGCATTTTTATCAACACCTGGG 59.740 43.478 0.00 0.00 0.00 4.45
853 4098 3.369366 GGCATTTTTATCAACACCTGGGG 60.369 47.826 0.00 0.00 0.00 4.96
855 4100 4.381932 GCATTTTTATCAACACCTGGGGAG 60.382 45.833 1.10 0.00 0.00 4.30
856 4101 2.507407 TTTATCAACACCTGGGGAGC 57.493 50.000 1.10 0.00 0.00 4.70
857 4102 1.367346 TTATCAACACCTGGGGAGCA 58.633 50.000 1.10 0.00 0.00 4.26
858 4103 0.618458 TATCAACACCTGGGGAGCAC 59.382 55.000 1.10 0.00 0.00 4.40
859 4104 1.426251 ATCAACACCTGGGGAGCACA 61.426 55.000 1.10 0.00 0.00 4.57
860 4105 1.075482 CAACACCTGGGGAGCACAT 59.925 57.895 1.10 0.00 0.00 3.21
861 4106 0.962356 CAACACCTGGGGAGCACATC 60.962 60.000 1.10 0.00 0.00 3.06
877 4122 3.426695 GCACATCCAGTAAAGCACACATC 60.427 47.826 0.00 0.00 0.00 3.06
878 4123 3.127548 CACATCCAGTAAAGCACACATCC 59.872 47.826 0.00 0.00 0.00 3.51
879 4124 3.244875 ACATCCAGTAAAGCACACATCCA 60.245 43.478 0.00 0.00 0.00 3.41
880 4125 3.500448 TCCAGTAAAGCACACATCCAA 57.500 42.857 0.00 0.00 0.00 3.53
881 4126 3.411446 TCCAGTAAAGCACACATCCAAG 58.589 45.455 0.00 0.00 0.00 3.61
882 4127 3.072330 TCCAGTAAAGCACACATCCAAGA 59.928 43.478 0.00 0.00 0.00 3.02
883 4128 3.820467 CCAGTAAAGCACACATCCAAGAA 59.180 43.478 0.00 0.00 0.00 2.52
884 4129 4.083110 CCAGTAAAGCACACATCCAAGAAG 60.083 45.833 0.00 0.00 0.00 2.85
886 4131 5.239306 CAGTAAAGCACACATCCAAGAAGAA 59.761 40.000 0.00 0.00 0.00 2.52
888 4133 4.574599 AAGCACACATCCAAGAAGAAAC 57.425 40.909 0.00 0.00 0.00 2.78
889 4134 3.825328 AGCACACATCCAAGAAGAAACT 58.175 40.909 0.00 0.00 0.00 2.66
890 4135 4.210331 AGCACACATCCAAGAAGAAACTT 58.790 39.130 0.00 0.00 0.00 2.66
891 4136 5.376625 AGCACACATCCAAGAAGAAACTTA 58.623 37.500 0.00 0.00 0.00 2.24
892 4137 5.471456 AGCACACATCCAAGAAGAAACTTAG 59.529 40.000 0.00 0.00 0.00 2.18
893 4138 5.693814 CACACATCCAAGAAGAAACTTAGC 58.306 41.667 0.00 0.00 0.00 3.09
909 4161 2.082140 TAGCGATGAAGGGCCTCTTA 57.918 50.000 6.46 0.00 35.50 2.10
918 4170 2.481471 GGGCCTCTTATTGTGCGCC 61.481 63.158 4.18 0.00 35.60 6.53
1102 4354 4.697756 AAAGCGGCGCCTGCTACA 62.698 61.111 34.53 0.00 43.14 2.74
1116 4368 3.438087 CCTGCTACAACAACAAGATCTGG 59.562 47.826 0.00 0.00 0.00 3.86
1122 4374 1.675310 CAACAAGATCTGGGGCGCA 60.675 57.895 10.83 3.57 0.00 6.09
1197 4449 3.862877 TGTGGCTATGGCAGTGAATAT 57.137 42.857 2.58 0.00 39.19 1.28
1272 4524 3.372557 CCACCTGGCCAATGGTAAA 57.627 52.632 22.63 0.00 34.79 2.01
1338 4590 4.452733 GGACCGGAGTTCTGCGGG 62.453 72.222 29.62 15.87 0.00 6.13
1356 4608 3.605664 GCTGGCTGCCAAAACGGT 61.606 61.111 23.51 0.00 36.97 4.83
1362 4614 1.437160 CTGCCAAAACGGTGCTTGT 59.563 52.632 0.00 0.00 36.97 3.16
1471 4723 3.010696 TGGCAAGGATTATTGTGGTACCA 59.989 43.478 11.60 11.60 32.56 3.25
1472 4724 4.020543 GGCAAGGATTATTGTGGTACCAA 58.979 43.478 18.31 1.51 32.56 3.67
1496 4765 1.020861 CAGAGCGGTGCATGCTACAA 61.021 55.000 20.33 0.00 44.18 2.41
1498 4767 0.028505 GAGCGGTGCATGCTACAATG 59.971 55.000 20.33 9.84 44.18 2.82
1499 4768 0.392863 AGCGGTGCATGCTACAATGA 60.393 50.000 20.33 0.00 41.87 2.57
1503 4772 2.355444 CGGTGCATGCTACAATGATTCA 59.645 45.455 20.33 0.00 0.00 2.57
1504 4773 3.181498 CGGTGCATGCTACAATGATTCAA 60.181 43.478 20.33 0.00 0.00 2.69
1542 4819 5.527582 ACTCAAGTGTGTACCTTGAATTGTC 59.472 40.000 12.31 0.00 36.78 3.18
1568 4845 3.664107 TGGAAGTATGAGTGTTGCAGTC 58.336 45.455 0.00 0.00 34.67 3.51
1571 4848 4.310769 GAAGTATGAGTGTTGCAGTCAGT 58.689 43.478 11.56 1.77 45.31 3.41
1572 4849 3.657634 AGTATGAGTGTTGCAGTCAGTG 58.342 45.455 11.56 0.00 45.31 3.66
1573 4850 1.888215 ATGAGTGTTGCAGTCAGTGG 58.112 50.000 11.56 0.00 45.31 4.00
1574 4851 0.815213 TGAGTGTTGCAGTCAGTGGC 60.815 55.000 6.13 0.00 38.67 5.01
1575 4852 1.835483 GAGTGTTGCAGTCAGTGGCG 61.835 60.000 6.13 0.00 34.29 5.69
1576 4853 2.591429 TGTTGCAGTCAGTGGCGG 60.591 61.111 0.00 0.00 0.00 6.13
1577 4854 2.280797 GTTGCAGTCAGTGGCGGA 60.281 61.111 0.00 0.00 0.00 5.54
1578 4855 2.031012 TTGCAGTCAGTGGCGGAG 59.969 61.111 0.00 0.00 0.00 4.63
1595 4872 1.819229 AGCTATGTGTGCTCCTCGG 59.181 57.895 0.00 0.00 35.67 4.63
1596 4873 1.227380 GCTATGTGTGCTCCTCGGG 60.227 63.158 0.00 0.00 0.00 5.14
1597 4874 1.443407 CTATGTGTGCTCCTCGGGG 59.557 63.158 0.00 0.00 0.00 5.73
1598 4875 1.305802 TATGTGTGCTCCTCGGGGT 60.306 57.895 0.00 0.00 0.00 4.95
1599 4876 1.613317 TATGTGTGCTCCTCGGGGTG 61.613 60.000 0.00 0.00 0.00 4.61
2036 5313 8.903820 AGATGAGTACAAATTTAGTATTTGGCC 58.096 33.333 13.07 0.00 41.80 5.36
2037 5314 7.399245 TGAGTACAAATTTAGTATTTGGCCC 57.601 36.000 0.00 0.00 41.80 5.80
2038 5315 6.378848 TGAGTACAAATTTAGTATTTGGCCCC 59.621 38.462 0.00 3.13 41.80 5.80
2039 5316 5.659525 AGTACAAATTTAGTATTTGGCCCCC 59.340 40.000 0.00 0.00 41.80 5.40
2040 5317 4.694512 ACAAATTTAGTATTTGGCCCCCT 58.305 39.130 0.00 0.00 41.80 4.79
2041 5318 4.714802 ACAAATTTAGTATTTGGCCCCCTC 59.285 41.667 0.00 0.00 41.80 4.30
2042 5319 4.618378 AATTTAGTATTTGGCCCCCTCA 57.382 40.909 0.00 0.00 0.00 3.86
2043 5320 3.662759 TTTAGTATTTGGCCCCCTCAG 57.337 47.619 0.00 0.00 0.00 3.35
2044 5321 1.518367 TAGTATTTGGCCCCCTCAGG 58.482 55.000 0.00 0.00 0.00 3.86
2045 5322 0.552615 AGTATTTGGCCCCCTCAGGT 60.553 55.000 0.00 0.00 0.00 4.00
2046 5323 0.106669 GTATTTGGCCCCCTCAGGTC 60.107 60.000 0.00 0.00 0.00 3.85
2047 5324 0.253630 TATTTGGCCCCCTCAGGTCT 60.254 55.000 0.00 0.00 30.64 3.85
2048 5325 1.867595 ATTTGGCCCCCTCAGGTCTG 61.868 60.000 0.00 0.00 30.64 3.51
2052 5329 3.406200 CCCCCTCAGGTCTGCCAG 61.406 72.222 0.00 0.00 37.19 4.85
2053 5330 2.608988 CCCCTCAGGTCTGCCAGT 60.609 66.667 0.00 0.00 37.19 4.00
2054 5331 2.227036 CCCCTCAGGTCTGCCAGTT 61.227 63.158 0.00 0.00 37.19 3.16
2055 5332 1.763770 CCCTCAGGTCTGCCAGTTT 59.236 57.895 0.00 0.00 37.19 2.66
2056 5333 0.111253 CCCTCAGGTCTGCCAGTTTT 59.889 55.000 0.00 0.00 37.19 2.43
2057 5334 1.351017 CCCTCAGGTCTGCCAGTTTTA 59.649 52.381 0.00 0.00 37.19 1.52
2058 5335 2.427506 CCTCAGGTCTGCCAGTTTTAC 58.572 52.381 0.00 0.00 37.19 2.01
2059 5336 2.427506 CTCAGGTCTGCCAGTTTTACC 58.572 52.381 0.00 0.00 37.19 2.85
2060 5337 1.771854 TCAGGTCTGCCAGTTTTACCA 59.228 47.619 3.44 0.00 37.19 3.25
2061 5338 2.375174 TCAGGTCTGCCAGTTTTACCAT 59.625 45.455 3.44 0.00 37.19 3.55
2062 5339 3.157087 CAGGTCTGCCAGTTTTACCATT 58.843 45.455 3.44 0.00 37.19 3.16
2063 5340 3.573967 CAGGTCTGCCAGTTTTACCATTT 59.426 43.478 3.44 0.00 37.19 2.32
2064 5341 3.826729 AGGTCTGCCAGTTTTACCATTTC 59.173 43.478 3.44 0.00 37.19 2.17
2065 5342 3.056821 GGTCTGCCAGTTTTACCATTTCC 60.057 47.826 0.00 0.00 34.09 3.13
2066 5343 3.056821 GTCTGCCAGTTTTACCATTTCCC 60.057 47.826 0.00 0.00 0.00 3.97
2067 5344 2.233676 CTGCCAGTTTTACCATTTCCCC 59.766 50.000 0.00 0.00 0.00 4.81
2068 5345 1.553248 GCCAGTTTTACCATTTCCCCC 59.447 52.381 0.00 0.00 0.00 5.40
2087 5364 2.701423 CCCCCTAGACTTTCTTCCTAGC 59.299 54.545 0.00 0.00 31.08 3.42
2088 5365 3.631346 CCCCCTAGACTTTCTTCCTAGCT 60.631 52.174 0.00 0.00 31.08 3.32
2089 5366 3.639561 CCCCTAGACTTTCTTCCTAGCTC 59.360 52.174 0.00 0.00 31.08 4.09
2090 5367 3.639561 CCCTAGACTTTCTTCCTAGCTCC 59.360 52.174 0.00 0.00 31.08 4.70
2091 5368 3.316868 CCTAGACTTTCTTCCTAGCTCCG 59.683 52.174 0.00 0.00 31.08 4.63
2092 5369 1.478916 AGACTTTCTTCCTAGCTCCGC 59.521 52.381 0.00 0.00 0.00 5.54
2093 5370 0.537653 ACTTTCTTCCTAGCTCCGCC 59.462 55.000 0.00 0.00 0.00 6.13
2094 5371 0.537188 CTTTCTTCCTAGCTCCGCCA 59.463 55.000 0.00 0.00 0.00 5.69
2095 5372 0.537188 TTTCTTCCTAGCTCCGCCAG 59.463 55.000 0.00 0.00 0.00 4.85
2096 5373 0.614979 TTCTTCCTAGCTCCGCCAGT 60.615 55.000 0.00 0.00 0.00 4.00
2097 5374 1.142748 CTTCCTAGCTCCGCCAGTG 59.857 63.158 0.00 0.00 0.00 3.66
2098 5375 2.303549 CTTCCTAGCTCCGCCAGTGG 62.304 65.000 4.20 4.20 0.00 4.00
2104 5381 3.052082 CTCCGCCAGTGGTTGCAG 61.052 66.667 11.74 0.00 0.00 4.41
2108 5385 1.968017 CGCCAGTGGTTGCAGTGAT 60.968 57.895 11.74 0.00 0.00 3.06
2184 5465 5.333299 TGTACCAGCTACATATCGTTGTT 57.667 39.130 0.00 0.00 29.73 2.83
2279 5574 7.731235 TCTGGTGGTACTATATATTGCCACTTA 59.269 37.037 27.63 19.83 44.02 2.24
2406 5720 6.064060 AGAACTGTGAATGGAATGAACTTCA 58.936 36.000 0.00 0.00 35.41 3.02
2436 5750 0.031449 TTAACAGCAGCGCCCAAAAC 59.969 50.000 2.29 0.00 0.00 2.43
2440 5754 4.999939 GCAGCGCCCAAAACACGG 63.000 66.667 2.29 0.00 0.00 4.94
2483 5799 9.643693 AAATGACATCACTGGAACATATTTTTC 57.356 29.630 0.00 0.00 38.20 2.29
2484 5800 7.156876 TGACATCACTGGAACATATTTTTCC 57.843 36.000 6.06 6.06 42.68 3.13
2488 5804 7.121759 ACATCACTGGAACATATTTTTCCTCTG 59.878 37.037 12.27 8.31 42.79 3.35
2489 5805 5.415701 TCACTGGAACATATTTTTCCTCTGC 59.584 40.000 12.27 0.00 42.79 4.26
2490 5806 4.396166 ACTGGAACATATTTTTCCTCTGCG 59.604 41.667 12.27 0.00 42.79 5.18
2491 5807 4.584874 TGGAACATATTTTTCCTCTGCGA 58.415 39.130 12.27 0.00 42.79 5.10
2492 5808 5.007034 TGGAACATATTTTTCCTCTGCGAA 58.993 37.500 12.27 0.00 42.79 4.70
2494 5810 6.152661 TGGAACATATTTTTCCTCTGCGAATT 59.847 34.615 12.27 0.00 42.79 2.17
2495 5811 6.473455 GGAACATATTTTTCCTCTGCGAATTG 59.527 38.462 5.82 0.00 39.68 2.32
2497 5813 7.156876 ACATATTTTTCCTCTGCGAATTGAA 57.843 32.000 0.00 0.00 0.00 2.69
2498 5814 7.775120 ACATATTTTTCCTCTGCGAATTGAAT 58.225 30.769 0.00 0.00 0.00 2.57
2499 5815 8.253113 ACATATTTTTCCTCTGCGAATTGAATT 58.747 29.630 0.00 0.00 0.00 2.17
2500 5816 9.734620 CATATTTTTCCTCTGCGAATTGAATTA 57.265 29.630 0.00 0.00 0.00 1.40
2503 5819 8.464770 TTTTTCCTCTGCGAATTGAATTATTG 57.535 30.769 0.00 0.00 0.00 1.90
2504 5820 7.389803 TTTCCTCTGCGAATTGAATTATTGA 57.610 32.000 0.00 0.00 0.00 2.57
2505 5821 7.389803 TTCCTCTGCGAATTGAATTATTGAA 57.610 32.000 0.00 0.00 0.00 2.69
2506 5822 7.019774 TCCTCTGCGAATTGAATTATTGAAG 57.980 36.000 0.00 0.00 0.00 3.02
2507 5823 6.038603 TCCTCTGCGAATTGAATTATTGAAGG 59.961 38.462 0.00 0.00 0.00 3.46
2508 5824 6.183360 CCTCTGCGAATTGAATTATTGAAGGT 60.183 38.462 0.00 0.00 0.00 3.50
2509 5825 6.554419 TCTGCGAATTGAATTATTGAAGGTG 58.446 36.000 0.00 0.00 0.00 4.00
2510 5826 6.374053 TCTGCGAATTGAATTATTGAAGGTGA 59.626 34.615 0.00 0.00 0.00 4.02
2511 5827 6.918626 TGCGAATTGAATTATTGAAGGTGAA 58.081 32.000 0.00 0.00 0.00 3.18
2512 5828 7.546358 TGCGAATTGAATTATTGAAGGTGAAT 58.454 30.769 0.00 0.00 0.00 2.57
2513 5829 8.034215 TGCGAATTGAATTATTGAAGGTGAATT 58.966 29.630 0.00 0.00 0.00 2.17
2530 5846 4.449743 GTGAATTACCTGTGTAGCAAACGA 59.550 41.667 0.00 0.00 0.00 3.85
2532 5848 3.738830 TTACCTGTGTAGCAAACGAGT 57.261 42.857 0.00 0.00 0.00 4.18
2533 5849 1.865865 ACCTGTGTAGCAAACGAGTG 58.134 50.000 0.00 0.00 0.00 3.51
2536 5852 0.105964 TGTGTAGCAAACGAGTGGCT 59.894 50.000 7.60 7.60 41.51 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.035066 ACTTTGCCTGCTTGTGAATCAC 59.965 45.455 6.41 6.41 34.56 3.06
11 12 2.034939 CACTTTGCCTGCTTGTGAATCA 59.965 45.455 0.00 0.00 0.00 2.57
13 14 2.309613 TCACTTTGCCTGCTTGTGAAT 58.690 42.857 8.91 0.00 35.15 2.57
14 15 1.761449 TCACTTTGCCTGCTTGTGAA 58.239 45.000 8.91 0.00 35.15 3.18
15 16 1.761449 TTCACTTTGCCTGCTTGTGA 58.239 45.000 7.80 7.80 36.10 3.58
16 17 2.582728 TTTCACTTTGCCTGCTTGTG 57.417 45.000 0.00 0.00 0.00 3.33
17 18 3.891366 AGTATTTCACTTTGCCTGCTTGT 59.109 39.130 0.00 0.00 31.59 3.16
35 36 9.810545 GAAAGCAGTACTATCTCAAGAAAGTAT 57.189 33.333 0.00 0.00 0.00 2.12
36 37 8.251721 GGAAAGCAGTACTATCTCAAGAAAGTA 58.748 37.037 0.00 0.00 0.00 2.24
38 39 7.327214 AGGAAAGCAGTACTATCTCAAGAAAG 58.673 38.462 0.00 0.00 0.00 2.62
40 41 6.404844 CGAGGAAAGCAGTACTATCTCAAGAA 60.405 42.308 0.00 0.00 0.00 2.52
41 42 5.066634 CGAGGAAAGCAGTACTATCTCAAGA 59.933 44.000 0.00 0.00 0.00 3.02
42 43 5.277825 CGAGGAAAGCAGTACTATCTCAAG 58.722 45.833 0.00 0.00 0.00 3.02
43 44 4.098044 CCGAGGAAAGCAGTACTATCTCAA 59.902 45.833 0.00 0.00 0.00 3.02
44 45 3.632604 CCGAGGAAAGCAGTACTATCTCA 59.367 47.826 0.00 0.00 0.00 3.27
45 46 3.633065 ACCGAGGAAAGCAGTACTATCTC 59.367 47.826 0.00 0.00 0.00 2.75
46 47 3.633418 ACCGAGGAAAGCAGTACTATCT 58.367 45.455 0.00 0.00 0.00 1.98
47 48 4.113354 CAACCGAGGAAAGCAGTACTATC 58.887 47.826 0.00 0.00 0.00 2.08
48 49 3.767673 TCAACCGAGGAAAGCAGTACTAT 59.232 43.478 0.00 0.00 0.00 2.12
49 50 3.159472 TCAACCGAGGAAAGCAGTACTA 58.841 45.455 0.00 0.00 0.00 1.82
51 52 2.450609 TCAACCGAGGAAAGCAGTAC 57.549 50.000 0.00 0.00 0.00 2.73
52 53 3.478857 TTTCAACCGAGGAAAGCAGTA 57.521 42.857 0.00 0.00 31.13 2.74
54 55 5.371115 TTTATTTCAACCGAGGAAAGCAG 57.629 39.130 0.00 0.00 37.64 4.24
55 56 5.975693 ATTTATTTCAACCGAGGAAAGCA 57.024 34.783 0.00 0.00 37.64 3.91
56 57 5.576774 CCAATTTATTTCAACCGAGGAAAGC 59.423 40.000 0.00 0.00 37.64 3.51
58 59 6.492087 AGTCCAATTTATTTCAACCGAGGAAA 59.508 34.615 0.00 0.00 38.49 3.13
60 61 5.414454 CAGTCCAATTTATTTCAACCGAGGA 59.586 40.000 0.00 0.00 0.00 3.71
61 62 5.640732 CAGTCCAATTTATTTCAACCGAGG 58.359 41.667 0.00 0.00 0.00 4.63
62 63 5.095490 GCAGTCCAATTTATTTCAACCGAG 58.905 41.667 0.00 0.00 0.00 4.63
63 64 4.520874 TGCAGTCCAATTTATTTCAACCGA 59.479 37.500 0.00 0.00 0.00 4.69
65 66 5.537188 TGTGCAGTCCAATTTATTTCAACC 58.463 37.500 0.00 0.00 0.00 3.77
66 67 8.755696 TTATGTGCAGTCCAATTTATTTCAAC 57.244 30.769 0.00 0.00 0.00 3.18
67 68 8.801299 TCTTATGTGCAGTCCAATTTATTTCAA 58.199 29.630 0.00 0.00 0.00 2.69
68 69 8.243426 GTCTTATGTGCAGTCCAATTTATTTCA 58.757 33.333 0.00 0.00 0.00 2.69
156 157 1.645710 ACGGGTCACCAAATCTCTCT 58.354 50.000 0.00 0.00 36.13 3.10
173 174 1.725931 GCAGCAATGAACCGAGAAACG 60.726 52.381 0.00 0.00 42.18 3.60
180 181 1.135689 GGTTACTGCAGCAATGAACCG 60.136 52.381 15.27 0.00 0.00 4.44
262 263 2.558359 CCGAAAAGAAGGGAGTGCATTT 59.442 45.455 0.00 0.00 0.00 2.32
263 264 2.162681 CCGAAAAGAAGGGAGTGCATT 58.837 47.619 0.00 0.00 0.00 3.56
264 265 1.073923 ACCGAAAAGAAGGGAGTGCAT 59.926 47.619 0.00 0.00 0.00 3.96
268 269 5.237236 TCATAAACCGAAAAGAAGGGAGT 57.763 39.130 0.00 0.00 0.00 3.85
269 270 4.636206 CCTCATAAACCGAAAAGAAGGGAG 59.364 45.833 0.00 0.00 0.00 4.30
270 271 4.585879 CCTCATAAACCGAAAAGAAGGGA 58.414 43.478 0.00 0.00 0.00 4.20
271 272 3.128764 GCCTCATAAACCGAAAAGAAGGG 59.871 47.826 0.00 0.00 0.00 3.95
272 273 4.010349 AGCCTCATAAACCGAAAAGAAGG 58.990 43.478 0.00 0.00 0.00 3.46
274 275 7.696992 AATAAGCCTCATAAACCGAAAAGAA 57.303 32.000 0.00 0.00 0.00 2.52
275 276 7.392113 TGAAATAAGCCTCATAAACCGAAAAGA 59.608 33.333 0.00 0.00 0.00 2.52
277 278 7.455641 TGAAATAAGCCTCATAAACCGAAAA 57.544 32.000 0.00 0.00 0.00 2.29
278 279 7.175990 AGTTGAAATAAGCCTCATAAACCGAAA 59.824 33.333 0.00 0.00 0.00 3.46
279 280 6.657541 AGTTGAAATAAGCCTCATAAACCGAA 59.342 34.615 0.00 0.00 0.00 4.30
281 282 6.436843 AGTTGAAATAAGCCTCATAAACCG 57.563 37.500 0.00 0.00 0.00 4.44
282 283 9.489084 AAAAAGTTGAAATAAGCCTCATAAACC 57.511 29.630 0.00 0.00 0.00 3.27
313 314 6.378280 GGAGATGAGCCCTCTAAATTGAAAAA 59.622 38.462 0.00 0.00 0.00 1.94
314 315 5.888161 GGAGATGAGCCCTCTAAATTGAAAA 59.112 40.000 0.00 0.00 0.00 2.29
316 317 4.474651 TGGAGATGAGCCCTCTAAATTGAA 59.525 41.667 0.00 0.00 0.00 2.69
317 318 4.040047 TGGAGATGAGCCCTCTAAATTGA 58.960 43.478 0.00 0.00 0.00 2.57
319 320 4.912744 AGATGGAGATGAGCCCTCTAAATT 59.087 41.667 0.00 0.00 30.00 1.82
320 321 4.501433 AGATGGAGATGAGCCCTCTAAAT 58.499 43.478 0.00 0.00 30.00 1.40
321 322 3.900601 GAGATGGAGATGAGCCCTCTAAA 59.099 47.826 0.00 0.00 31.64 1.85
324 325 1.219980 TGAGATGGAGATGAGCCCTCT 59.780 52.381 0.00 0.00 33.78 3.69
325 326 1.714541 TGAGATGGAGATGAGCCCTC 58.285 55.000 0.00 0.00 0.00 4.30
326 327 2.419457 ATGAGATGGAGATGAGCCCT 57.581 50.000 0.00 0.00 0.00 5.19
327 328 3.505480 AAATGAGATGGAGATGAGCCC 57.495 47.619 0.00 0.00 0.00 5.19
328 329 6.060788 ACTAAAAATGAGATGGAGATGAGCC 58.939 40.000 0.00 0.00 0.00 4.70
329 330 7.565323 AACTAAAAATGAGATGGAGATGAGC 57.435 36.000 0.00 0.00 0.00 4.26
331 332 9.519191 TGAAAACTAAAAATGAGATGGAGATGA 57.481 29.630 0.00 0.00 0.00 2.92
335 336 9.918630 ACATTGAAAACTAAAAATGAGATGGAG 57.081 29.630 0.00 0.00 34.75 3.86
336 337 9.695526 CACATTGAAAACTAAAAATGAGATGGA 57.304 29.630 0.00 0.00 34.75 3.41
338 339 8.980610 TGCACATTGAAAACTAAAAATGAGATG 58.019 29.630 0.00 0.00 34.75 2.90
339 340 9.715121 ATGCACATTGAAAACTAAAAATGAGAT 57.285 25.926 0.00 0.00 34.75 2.75
350 351 8.284693 GCAAAGATTTAATGCACATTGAAAACT 58.715 29.630 6.13 5.86 39.81 2.66
351 352 8.068977 TGCAAAGATTTAATGCACATTGAAAAC 58.931 29.630 6.13 3.97 44.52 2.43
352 353 8.151141 TGCAAAGATTTAATGCACATTGAAAA 57.849 26.923 6.13 0.62 44.52 2.29
353 354 7.725818 TGCAAAGATTTAATGCACATTGAAA 57.274 28.000 6.13 4.01 44.52 2.69
367 368 8.508875 CCTCTTTAATTTTGCATGCAAAGATTT 58.491 29.630 36.44 30.86 45.15 2.17
369 370 7.388437 TCCTCTTTAATTTTGCATGCAAAGAT 58.612 30.769 36.44 30.70 45.15 2.40
370 371 6.757237 TCCTCTTTAATTTTGCATGCAAAGA 58.243 32.000 36.44 29.03 45.15 2.52
371 372 7.041916 TGTTCCTCTTTAATTTTGCATGCAAAG 60.042 33.333 36.44 26.98 45.15 2.77
372 373 6.765036 TGTTCCTCTTTAATTTTGCATGCAAA 59.235 30.769 35.80 35.80 43.23 3.68
373 374 6.202570 GTGTTCCTCTTTAATTTTGCATGCAA 59.797 34.615 28.80 28.80 0.00 4.08
374 375 5.695816 GTGTTCCTCTTTAATTTTGCATGCA 59.304 36.000 18.46 18.46 0.00 3.96
376 377 6.146021 GGTGTGTTCCTCTTTAATTTTGCATG 59.854 38.462 0.00 0.00 0.00 4.06
378 379 5.127845 TGGTGTGTTCCTCTTTAATTTTGCA 59.872 36.000 0.00 0.00 0.00 4.08
379 380 5.596845 TGGTGTGTTCCTCTTTAATTTTGC 58.403 37.500 0.00 0.00 0.00 3.68
380 381 7.307337 GCATTGGTGTGTTCCTCTTTAATTTTG 60.307 37.037 0.00 0.00 0.00 2.44
381 382 6.705825 GCATTGGTGTGTTCCTCTTTAATTTT 59.294 34.615 0.00 0.00 0.00 1.82
382 383 6.183360 TGCATTGGTGTGTTCCTCTTTAATTT 60.183 34.615 0.00 0.00 0.00 1.82
383 384 5.304101 TGCATTGGTGTGTTCCTCTTTAATT 59.696 36.000 0.00 0.00 0.00 1.40
384 385 4.832266 TGCATTGGTGTGTTCCTCTTTAAT 59.168 37.500 0.00 0.00 0.00 1.40
385 386 4.211125 TGCATTGGTGTGTTCCTCTTTAA 58.789 39.130 0.00 0.00 0.00 1.52
386 387 3.826524 TGCATTGGTGTGTTCCTCTTTA 58.173 40.909 0.00 0.00 0.00 1.85
387 388 2.665165 TGCATTGGTGTGTTCCTCTTT 58.335 42.857 0.00 0.00 0.00 2.52
390 391 1.888512 ACATGCATTGGTGTGTTCCTC 59.111 47.619 0.00 0.00 0.00 3.71
391 392 1.999648 ACATGCATTGGTGTGTTCCT 58.000 45.000 0.00 0.00 0.00 3.36
392 393 3.932545 TTACATGCATTGGTGTGTTCC 57.067 42.857 0.00 0.00 0.00 3.62
393 394 4.808558 ACATTACATGCATTGGTGTGTTC 58.191 39.130 0.00 0.00 0.00 3.18
394 395 4.870123 ACATTACATGCATTGGTGTGTT 57.130 36.364 0.00 0.00 0.00 3.32
395 396 4.321899 GGAACATTACATGCATTGGTGTGT 60.322 41.667 0.00 0.63 0.00 3.72
397 398 4.088634 AGGAACATTACATGCATTGGTGT 58.911 39.130 0.00 0.00 0.00 4.16
398 399 4.724074 AGGAACATTACATGCATTGGTG 57.276 40.909 0.00 0.00 0.00 4.17
399 400 5.509498 AGTAGGAACATTACATGCATTGGT 58.491 37.500 0.00 0.00 0.00 3.67
400 401 5.589855 TGAGTAGGAACATTACATGCATTGG 59.410 40.000 0.00 0.00 0.00 3.16
401 402 6.682423 TGAGTAGGAACATTACATGCATTG 57.318 37.500 0.00 0.00 0.00 2.82
402 403 7.285566 AGATGAGTAGGAACATTACATGCATT 58.714 34.615 0.00 0.00 0.00 3.56
403 404 6.835174 AGATGAGTAGGAACATTACATGCAT 58.165 36.000 0.00 0.00 0.00 3.96
404 405 6.239217 AGATGAGTAGGAACATTACATGCA 57.761 37.500 0.00 0.00 0.00 3.96
405 406 7.383572 CACTAGATGAGTAGGAACATTACATGC 59.616 40.741 0.00 0.00 35.64 4.06
407 408 7.472100 GCCACTAGATGAGTAGGAACATTACAT 60.472 40.741 0.00 0.00 35.64 2.29
409 410 6.217294 GCCACTAGATGAGTAGGAACATTAC 58.783 44.000 0.00 0.00 35.64 1.89
410 411 5.304614 GGCCACTAGATGAGTAGGAACATTA 59.695 44.000 0.00 0.00 35.64 1.90
411 412 4.101741 GGCCACTAGATGAGTAGGAACATT 59.898 45.833 0.00 0.00 35.64 2.71
412 413 3.643792 GGCCACTAGATGAGTAGGAACAT 59.356 47.826 0.00 0.00 35.64 2.71
413 414 3.031736 GGCCACTAGATGAGTAGGAACA 58.968 50.000 0.00 0.00 35.64 3.18
415 416 3.398318 TGGCCACTAGATGAGTAGGAA 57.602 47.619 0.00 0.00 35.64 3.36
416 417 3.300388 CTTGGCCACTAGATGAGTAGGA 58.700 50.000 3.88 0.00 35.64 2.94
417 418 2.224161 GCTTGGCCACTAGATGAGTAGG 60.224 54.545 3.88 0.00 35.64 3.18
420 421 1.279496 TGCTTGGCCACTAGATGAGT 58.721 50.000 3.88 0.00 39.82 3.41
421 422 2.219458 CATGCTTGGCCACTAGATGAG 58.781 52.381 3.88 0.00 0.00 2.90
422 423 1.748244 GCATGCTTGGCCACTAGATGA 60.748 52.381 3.88 0.00 0.00 2.92
423 424 0.666913 GCATGCTTGGCCACTAGATG 59.333 55.000 3.88 6.90 0.00 2.90
424 425 0.256752 TGCATGCTTGGCCACTAGAT 59.743 50.000 20.33 0.00 0.00 1.98
425 426 0.256752 ATGCATGCTTGGCCACTAGA 59.743 50.000 20.33 0.00 0.00 2.43
426 427 1.605710 GTATGCATGCTTGGCCACTAG 59.394 52.381 20.33 1.27 0.00 2.57
427 428 1.064832 TGTATGCATGCTTGGCCACTA 60.065 47.619 20.33 0.00 0.00 2.74
428 429 0.323633 TGTATGCATGCTTGGCCACT 60.324 50.000 20.33 0.00 0.00 4.00
429 430 0.179129 GTGTATGCATGCTTGGCCAC 60.179 55.000 20.33 15.87 0.00 5.01
430 431 0.323633 AGTGTATGCATGCTTGGCCA 60.324 50.000 20.33 0.00 0.00 5.36
431 432 0.101759 CAGTGTATGCATGCTTGGCC 59.898 55.000 20.33 0.00 0.00 5.36
432 433 3.635433 CAGTGTATGCATGCTTGGC 57.365 52.632 20.33 10.59 0.00 4.52
480 481 9.387257 CTCGTACTTTATAAAACTACCCCAATT 57.613 33.333 0.00 0.00 0.00 2.32
481 482 8.761689 TCTCGTACTTTATAAAACTACCCCAAT 58.238 33.333 0.00 0.00 0.00 3.16
482 483 8.133024 TCTCGTACTTTATAAAACTACCCCAA 57.867 34.615 0.00 0.00 0.00 4.12
493 494 9.470399 TGGAGGCATATATCTCGTACTTTATAA 57.530 33.333 0.00 0.00 0.00 0.98
496 497 6.946583 AGTGGAGGCATATATCTCGTACTTTA 59.053 38.462 0.00 0.00 29.85 1.85
497 498 5.775701 AGTGGAGGCATATATCTCGTACTTT 59.224 40.000 0.00 0.00 29.85 2.66
499 500 4.924625 AGTGGAGGCATATATCTCGTACT 58.075 43.478 0.00 5.10 0.00 2.73
500 501 4.700692 TGAGTGGAGGCATATATCTCGTAC 59.299 45.833 0.00 0.00 0.00 3.67
501 502 4.700692 GTGAGTGGAGGCATATATCTCGTA 59.299 45.833 0.00 0.00 0.00 3.43
502 503 3.508012 GTGAGTGGAGGCATATATCTCGT 59.492 47.826 0.00 0.00 0.00 4.18
503 504 3.507622 TGTGAGTGGAGGCATATATCTCG 59.492 47.826 0.00 0.00 0.00 4.04
505 506 5.894298 TTTGTGAGTGGAGGCATATATCT 57.106 39.130 0.00 0.00 0.00 1.98
506 507 6.569226 GCATTTTGTGAGTGGAGGCATATATC 60.569 42.308 0.00 0.00 0.00 1.63
507 508 5.242393 GCATTTTGTGAGTGGAGGCATATAT 59.758 40.000 0.00 0.00 0.00 0.86
509 510 3.382546 GCATTTTGTGAGTGGAGGCATAT 59.617 43.478 0.00 0.00 0.00 1.78
510 511 2.754552 GCATTTTGTGAGTGGAGGCATA 59.245 45.455 0.00 0.00 0.00 3.14
511 512 1.547372 GCATTTTGTGAGTGGAGGCAT 59.453 47.619 0.00 0.00 0.00 4.40
512 513 0.961019 GCATTTTGTGAGTGGAGGCA 59.039 50.000 0.00 0.00 0.00 4.75
513 514 0.244721 GGCATTTTGTGAGTGGAGGC 59.755 55.000 0.00 0.00 0.00 4.70
514 515 1.915141 AGGCATTTTGTGAGTGGAGG 58.085 50.000 0.00 0.00 0.00 4.30
517 518 1.688197 ACCAAGGCATTTTGTGAGTGG 59.312 47.619 0.00 0.00 33.29 4.00
518 519 3.125316 CAACCAAGGCATTTTGTGAGTG 58.875 45.455 0.00 0.00 0.00 3.51
519 520 3.030291 TCAACCAAGGCATTTTGTGAGT 58.970 40.909 0.00 0.00 0.00 3.41
520 521 3.731652 TCAACCAAGGCATTTTGTGAG 57.268 42.857 0.00 0.00 0.00 3.51
521 522 3.640498 TCATCAACCAAGGCATTTTGTGA 59.360 39.130 0.00 0.00 0.00 3.58
523 524 3.896888 TCTCATCAACCAAGGCATTTTGT 59.103 39.130 0.00 0.00 0.00 2.83
524 525 4.524316 TCTCATCAACCAAGGCATTTTG 57.476 40.909 0.00 0.00 0.00 2.44
528 529 4.346730 TCAAATCTCATCAACCAAGGCAT 58.653 39.130 0.00 0.00 0.00 4.40
529 530 3.760151 CTCAAATCTCATCAACCAAGGCA 59.240 43.478 0.00 0.00 0.00 4.75
532 533 7.823665 TCAAATCTCAAATCTCATCAACCAAG 58.176 34.615 0.00 0.00 0.00 3.61
533 534 7.576287 GCTCAAATCTCAAATCTCATCAACCAA 60.576 37.037 0.00 0.00 0.00 3.67
534 535 6.127814 GCTCAAATCTCAAATCTCATCAACCA 60.128 38.462 0.00 0.00 0.00 3.67
535 536 6.264088 GCTCAAATCTCAAATCTCATCAACC 58.736 40.000 0.00 0.00 0.00 3.77
537 538 6.185511 AGGCTCAAATCTCAAATCTCATCAA 58.814 36.000 0.00 0.00 0.00 2.57
538 539 5.752650 AGGCTCAAATCTCAAATCTCATCA 58.247 37.500 0.00 0.00 0.00 3.07
540 541 9.857656 TTATAAGGCTCAAATCTCAAATCTCAT 57.142 29.630 0.00 0.00 0.00 2.90
541 542 9.685276 TTTATAAGGCTCAAATCTCAAATCTCA 57.315 29.630 0.00 0.00 0.00 3.27
542 543 9.943163 GTTTATAAGGCTCAAATCTCAAATCTC 57.057 33.333 0.00 0.00 0.00 2.75
543 544 8.907885 GGTTTATAAGGCTCAAATCTCAAATCT 58.092 33.333 0.00 0.00 0.00 2.40
546 547 6.094881 CCGGTTTATAAGGCTCAAATCTCAAA 59.905 38.462 0.00 0.00 0.00 2.69
547 548 5.588648 CCGGTTTATAAGGCTCAAATCTCAA 59.411 40.000 0.00 0.00 0.00 3.02
548 549 5.104693 TCCGGTTTATAAGGCTCAAATCTCA 60.105 40.000 0.00 0.00 0.00 3.27
550 551 5.367945 TCCGGTTTATAAGGCTCAAATCT 57.632 39.130 0.00 0.00 0.00 2.40
551 552 6.445357 TTTCCGGTTTATAAGGCTCAAATC 57.555 37.500 0.00 0.00 0.00 2.17
552 553 5.359860 CCTTTCCGGTTTATAAGGCTCAAAT 59.640 40.000 0.00 0.00 31.59 2.32
554 555 4.019141 TCCTTTCCGGTTTATAAGGCTCAA 60.019 41.667 0.00 0.00 37.62 3.02
557 558 3.118000 CCTCCTTTCCGGTTTATAAGGCT 60.118 47.826 0.00 0.00 37.62 4.58
558 559 3.211865 CCTCCTTTCCGGTTTATAAGGC 58.788 50.000 0.00 0.00 37.62 4.35
559 560 3.457012 TCCCTCCTTTCCGGTTTATAAGG 59.543 47.826 0.00 8.36 38.78 2.69
560 561 4.163649 ACTCCCTCCTTTCCGGTTTATAAG 59.836 45.833 0.00 0.00 0.00 1.73
561 562 4.106324 ACTCCCTCCTTTCCGGTTTATAA 58.894 43.478 0.00 0.00 0.00 0.98
562 563 3.727948 ACTCCCTCCTTTCCGGTTTATA 58.272 45.455 0.00 0.00 0.00 0.98
564 565 2.034436 ACTCCCTCCTTTCCGGTTTA 57.966 50.000 0.00 0.00 0.00 2.01
565 566 1.627329 GTACTCCCTCCTTTCCGGTTT 59.373 52.381 0.00 0.00 0.00 3.27
566 567 1.203275 AGTACTCCCTCCTTTCCGGTT 60.203 52.381 0.00 0.00 0.00 4.44
567 568 0.412640 AGTACTCCCTCCTTTCCGGT 59.587 55.000 0.00 0.00 0.00 5.28
568 569 1.569653 AAGTACTCCCTCCTTTCCGG 58.430 55.000 0.00 0.00 0.00 5.14
569 570 2.302157 ACAAAGTACTCCCTCCTTTCCG 59.698 50.000 0.00 0.00 0.00 4.30
570 571 5.012871 ACTTACAAAGTACTCCCTCCTTTCC 59.987 44.000 0.00 0.00 40.69 3.13
572 573 6.511017 AACTTACAAAGTACTCCCTCCTTT 57.489 37.500 0.00 0.00 41.91 3.11
573 574 6.511017 AAACTTACAAAGTACTCCCTCCTT 57.489 37.500 0.00 0.00 41.91 3.36
574 575 6.100714 TGAAAACTTACAAAGTACTCCCTCCT 59.899 38.462 0.00 0.00 41.91 3.69
575 576 6.293698 TGAAAACTTACAAAGTACTCCCTCC 58.706 40.000 0.00 0.00 41.91 4.30
576 577 7.797038 TTGAAAACTTACAAAGTACTCCCTC 57.203 36.000 0.00 0.00 41.91 4.30
577 578 8.762481 AATTGAAAACTTACAAAGTACTCCCT 57.238 30.769 0.00 0.00 41.91 4.20
578 579 9.811995 AAAATTGAAAACTTACAAAGTACTCCC 57.188 29.630 0.00 0.00 41.91 4.30
596 597 8.862325 TTGACCTCATAAGCTCTAAAATTGAA 57.138 30.769 0.00 0.00 0.00 2.69
825 4070 5.412286 AGGTGTTGATAAAAATGCCAAATGC 59.588 36.000 0.00 0.00 41.77 3.56
826 4071 6.128227 CCAGGTGTTGATAAAAATGCCAAATG 60.128 38.462 0.00 0.00 0.00 2.32
827 4072 5.939296 CCAGGTGTTGATAAAAATGCCAAAT 59.061 36.000 0.00 0.00 0.00 2.32
830 4075 3.260380 CCCAGGTGTTGATAAAAATGCCA 59.740 43.478 0.00 0.00 0.00 4.92
832 4077 3.513515 TCCCCAGGTGTTGATAAAAATGC 59.486 43.478 0.00 0.00 0.00 3.56
833 4078 4.381932 GCTCCCCAGGTGTTGATAAAAATG 60.382 45.833 0.00 0.00 0.00 2.32
834 4079 3.769300 GCTCCCCAGGTGTTGATAAAAAT 59.231 43.478 0.00 0.00 0.00 1.82
838 4083 1.004277 GTGCTCCCCAGGTGTTGATAA 59.996 52.381 0.00 0.00 0.00 1.75
839 4084 0.618458 GTGCTCCCCAGGTGTTGATA 59.382 55.000 0.00 0.00 0.00 2.15
840 4085 1.380302 GTGCTCCCCAGGTGTTGAT 59.620 57.895 0.00 0.00 0.00 2.57
841 4086 1.426251 ATGTGCTCCCCAGGTGTTGA 61.426 55.000 0.00 0.00 0.00 3.18
842 4087 0.962356 GATGTGCTCCCCAGGTGTTG 60.962 60.000 0.00 0.00 0.00 3.33
844 4089 2.606587 GGATGTGCTCCCCAGGTGT 61.607 63.158 0.00 0.00 38.19 4.16
845 4090 2.273449 GGATGTGCTCCCCAGGTG 59.727 66.667 0.00 0.00 38.19 4.00
846 4091 2.204136 TGGATGTGCTCCCCAGGT 60.204 61.111 0.00 0.00 44.23 4.00
849 4094 1.281867 CTTTACTGGATGTGCTCCCCA 59.718 52.381 0.00 0.00 44.23 4.96
852 4097 1.740025 GTGCTTTACTGGATGTGCTCC 59.260 52.381 0.00 0.00 45.19 4.70
853 4098 2.160417 GTGTGCTTTACTGGATGTGCTC 59.840 50.000 0.00 0.00 0.00 4.26
855 4100 1.879380 TGTGTGCTTTACTGGATGTGC 59.121 47.619 0.00 0.00 0.00 4.57
856 4101 3.127548 GGATGTGTGCTTTACTGGATGTG 59.872 47.826 0.00 0.00 0.00 3.21
857 4102 3.244875 TGGATGTGTGCTTTACTGGATGT 60.245 43.478 0.00 0.00 0.00 3.06
858 4103 3.346315 TGGATGTGTGCTTTACTGGATG 58.654 45.455 0.00 0.00 0.00 3.51
859 4104 3.719268 TGGATGTGTGCTTTACTGGAT 57.281 42.857 0.00 0.00 0.00 3.41
860 4105 3.072330 TCTTGGATGTGTGCTTTACTGGA 59.928 43.478 0.00 0.00 0.00 3.86
861 4106 3.411446 TCTTGGATGTGTGCTTTACTGG 58.589 45.455 0.00 0.00 0.00 4.00
862 4107 4.756642 TCTTCTTGGATGTGTGCTTTACTG 59.243 41.667 0.00 0.00 0.00 2.74
863 4108 4.973168 TCTTCTTGGATGTGTGCTTTACT 58.027 39.130 0.00 0.00 0.00 2.24
864 4109 5.689383 TTCTTCTTGGATGTGTGCTTTAC 57.311 39.130 0.00 0.00 0.00 2.01
865 4110 5.827797 AGTTTCTTCTTGGATGTGTGCTTTA 59.172 36.000 0.00 0.00 0.00 1.85
866 4111 4.646492 AGTTTCTTCTTGGATGTGTGCTTT 59.354 37.500 0.00 0.00 0.00 3.51
867 4112 4.210331 AGTTTCTTCTTGGATGTGTGCTT 58.790 39.130 0.00 0.00 0.00 3.91
869 4114 4.574599 AAGTTTCTTCTTGGATGTGTGC 57.425 40.909 0.00 0.00 0.00 4.57
870 4115 5.615544 CGCTAAGTTTCTTCTTGGATGTGTG 60.616 44.000 0.00 0.00 0.00 3.82
871 4116 4.452455 CGCTAAGTTTCTTCTTGGATGTGT 59.548 41.667 0.00 0.00 0.00 3.72
877 4122 5.163814 CCTTCATCGCTAAGTTTCTTCTTGG 60.164 44.000 0.00 0.00 0.00 3.61
878 4123 5.163814 CCCTTCATCGCTAAGTTTCTTCTTG 60.164 44.000 0.00 0.00 0.00 3.02
879 4124 4.938226 CCCTTCATCGCTAAGTTTCTTCTT 59.062 41.667 0.00 0.00 0.00 2.52
880 4125 4.508662 CCCTTCATCGCTAAGTTTCTTCT 58.491 43.478 0.00 0.00 0.00 2.85
881 4126 3.064134 GCCCTTCATCGCTAAGTTTCTTC 59.936 47.826 0.00 0.00 0.00 2.87
882 4127 3.010420 GCCCTTCATCGCTAAGTTTCTT 58.990 45.455 0.00 0.00 0.00 2.52
883 4128 2.633488 GCCCTTCATCGCTAAGTTTCT 58.367 47.619 0.00 0.00 0.00 2.52
884 4129 1.671328 GGCCCTTCATCGCTAAGTTTC 59.329 52.381 0.00 0.00 0.00 2.78
886 4131 0.912486 AGGCCCTTCATCGCTAAGTT 59.088 50.000 0.00 0.00 0.00 2.66
888 4133 0.755686 AGAGGCCCTTCATCGCTAAG 59.244 55.000 0.00 0.00 0.00 2.18
889 4134 1.204146 AAGAGGCCCTTCATCGCTAA 58.796 50.000 0.00 0.00 0.00 3.09
890 4135 2.082140 TAAGAGGCCCTTCATCGCTA 57.918 50.000 9.46 0.00 36.34 4.26
891 4136 1.428869 ATAAGAGGCCCTTCATCGCT 58.571 50.000 9.46 0.00 36.34 4.93
892 4137 1.876156 CAATAAGAGGCCCTTCATCGC 59.124 52.381 9.46 0.00 36.34 4.58
893 4138 2.874701 CACAATAAGAGGCCCTTCATCG 59.125 50.000 9.46 1.85 36.34 3.84
918 4170 1.662446 CGCAAAGGCAAGTGCAAGG 60.662 57.895 5.52 0.00 44.36 3.61
959 4211 1.473278 AGCGCTTCTCACAGTACTACC 59.527 52.381 2.64 0.00 0.00 3.18
961 4213 1.135373 GCAGCGCTTCTCACAGTACTA 60.135 52.381 7.50 0.00 0.00 1.82
1054 4306 1.444383 CAGCGCTGCAGTAGTCGAA 60.444 57.895 26.68 0.00 0.00 3.71
1086 4338 4.697756 TTGTAGCAGGCGCCGCTT 62.698 61.111 37.37 25.49 40.96 4.68
1102 4354 1.244019 GCGCCCCAGATCTTGTTGTT 61.244 55.000 0.00 0.00 0.00 2.83
1122 4374 4.284550 AATGCACCACCGGCCTGT 62.285 61.111 0.00 0.00 0.00 4.00
1166 4418 1.198759 ATAGCCACAACGACCACCCT 61.199 55.000 0.00 0.00 0.00 4.34
1272 4524 2.027285 GCAAAGGTTATTGGGGCATTGT 60.027 45.455 0.00 0.00 0.00 2.71
1300 4552 6.120220 GTCCTAAGCCACAGTAACCATATTT 58.880 40.000 0.00 0.00 0.00 1.40
1387 4639 0.659427 CATCGTGCACCATTAGCCTG 59.341 55.000 12.15 0.00 0.00 4.85
1471 4723 3.557903 ATGCACCGCTCTGGCAGTT 62.558 57.895 15.27 0.00 43.94 3.16
1472 4724 4.025858 ATGCACCGCTCTGGCAGT 62.026 61.111 15.27 0.00 43.94 4.40
1496 4765 6.845908 AGTATGTTAGCCAGGATTGAATCAT 58.154 36.000 7.56 0.00 0.00 2.45
1498 4767 6.291377 TGAGTATGTTAGCCAGGATTGAATC 58.709 40.000 0.00 0.00 0.00 2.52
1499 4768 6.252599 TGAGTATGTTAGCCAGGATTGAAT 57.747 37.500 0.00 0.00 0.00 2.57
1503 4772 5.045578 ACACTTGAGTATGTTAGCCAGGATT 60.046 40.000 0.00 0.00 0.00 3.01
1504 4773 4.471386 ACACTTGAGTATGTTAGCCAGGAT 59.529 41.667 0.00 0.00 0.00 3.24
1542 4819 2.315925 ACACTCATACTTCCATGGCG 57.684 50.000 6.96 2.80 0.00 5.69
1568 4845 1.086067 CACACATAGCTCCGCCACTG 61.086 60.000 0.00 0.00 0.00 3.66
1571 4848 2.125147 GCACACATAGCTCCGCCA 60.125 61.111 0.00 0.00 0.00 5.69
1572 4849 2.187946 AGCACACATAGCTCCGCC 59.812 61.111 0.00 0.00 38.01 6.13
1577 4854 1.680522 CCCGAGGAGCACACATAGCT 61.681 60.000 0.00 0.00 46.82 3.32
1578 4855 1.227380 CCCGAGGAGCACACATAGC 60.227 63.158 0.00 0.00 0.00 2.97
1579 4856 1.330655 ACCCCGAGGAGCACACATAG 61.331 60.000 0.00 0.00 36.73 2.23
1580 4857 1.305802 ACCCCGAGGAGCACACATA 60.306 57.895 0.00 0.00 36.73 2.29
1581 4858 2.607750 ACCCCGAGGAGCACACAT 60.608 61.111 0.00 0.00 36.73 3.21
1582 4859 3.625897 CACCCCGAGGAGCACACA 61.626 66.667 0.00 0.00 36.73 3.72
2010 5287 8.903820 GGCCAAATACTAAATTTGTACTCATCT 58.096 33.333 0.00 0.00 37.32 2.90
2011 5288 8.135529 GGGCCAAATACTAAATTTGTACTCATC 58.864 37.037 4.39 0.00 37.32 2.92
2012 5289 7.069455 GGGGCCAAATACTAAATTTGTACTCAT 59.931 37.037 4.39 0.00 37.32 2.90
2013 5290 6.378848 GGGGCCAAATACTAAATTTGTACTCA 59.621 38.462 4.39 0.00 37.32 3.41
2014 5291 6.183360 GGGGGCCAAATACTAAATTTGTACTC 60.183 42.308 4.39 2.29 37.32 2.59
2015 5292 5.659525 GGGGGCCAAATACTAAATTTGTACT 59.340 40.000 4.39 0.00 37.32 2.73
2016 5293 5.659525 AGGGGGCCAAATACTAAATTTGTAC 59.340 40.000 4.39 0.00 37.32 2.90
2017 5294 5.844601 AGGGGGCCAAATACTAAATTTGTA 58.155 37.500 4.39 2.26 37.32 2.41
2018 5295 4.694512 AGGGGGCCAAATACTAAATTTGT 58.305 39.130 4.39 0.00 37.32 2.83
2019 5296 4.714308 TGAGGGGGCCAAATACTAAATTTG 59.286 41.667 4.39 3.94 38.39 2.32
2020 5297 4.954089 TGAGGGGGCCAAATACTAAATTT 58.046 39.130 4.39 0.00 0.00 1.82
2021 5298 4.546674 CTGAGGGGGCCAAATACTAAATT 58.453 43.478 4.39 0.00 0.00 1.82
2022 5299 3.117131 CCTGAGGGGGCCAAATACTAAAT 60.117 47.826 4.39 0.00 0.00 1.40
2023 5300 2.243736 CCTGAGGGGGCCAAATACTAAA 59.756 50.000 4.39 0.00 0.00 1.85
2024 5301 1.850345 CCTGAGGGGGCCAAATACTAA 59.150 52.381 4.39 0.00 0.00 2.24
2025 5302 1.274767 ACCTGAGGGGGCCAAATACTA 60.275 52.381 4.39 0.00 40.03 1.82
2026 5303 0.552615 ACCTGAGGGGGCCAAATACT 60.553 55.000 4.39 0.00 40.03 2.12
2027 5304 0.106669 GACCTGAGGGGGCCAAATAC 60.107 60.000 4.39 0.00 37.05 1.89
2028 5305 0.253630 AGACCTGAGGGGGCCAAATA 60.254 55.000 4.39 0.00 46.87 1.40
2029 5306 1.544917 AGACCTGAGGGGGCCAAAT 60.545 57.895 4.39 0.00 46.87 2.32
2030 5307 2.121506 AGACCTGAGGGGGCCAAA 60.122 61.111 4.39 0.00 46.87 3.28
2031 5308 2.935481 CAGACCTGAGGGGGCCAA 60.935 66.667 4.39 0.00 46.87 4.52
2035 5312 3.406200 CTGGCAGACCTGAGGGGG 61.406 72.222 9.42 0.00 40.03 5.40
2036 5313 1.783250 AAACTGGCAGACCTGAGGGG 61.783 60.000 23.66 0.00 38.25 4.79
2037 5314 0.111253 AAAACTGGCAGACCTGAGGG 59.889 55.000 23.66 0.00 38.25 4.30
2038 5315 2.427506 GTAAAACTGGCAGACCTGAGG 58.572 52.381 23.66 0.00 38.25 3.86
2039 5316 2.224523 TGGTAAAACTGGCAGACCTGAG 60.225 50.000 23.66 0.00 38.25 3.35
2040 5317 1.771854 TGGTAAAACTGGCAGACCTGA 59.228 47.619 23.66 0.08 38.25 3.86
2041 5318 2.270352 TGGTAAAACTGGCAGACCTG 57.730 50.000 23.66 0.00 40.61 4.00
2042 5319 3.525800 AATGGTAAAACTGGCAGACCT 57.474 42.857 23.66 6.86 36.63 3.85
2043 5320 3.056821 GGAAATGGTAAAACTGGCAGACC 60.057 47.826 23.66 18.30 0.00 3.85
2044 5321 3.056821 GGGAAATGGTAAAACTGGCAGAC 60.057 47.826 23.66 8.62 0.00 3.51
2045 5322 3.161866 GGGAAATGGTAAAACTGGCAGA 58.838 45.455 23.66 0.00 0.00 4.26
2046 5323 2.233676 GGGGAAATGGTAAAACTGGCAG 59.766 50.000 14.16 14.16 0.00 4.85
2047 5324 2.252714 GGGGAAATGGTAAAACTGGCA 58.747 47.619 0.00 0.00 0.00 4.92
2048 5325 1.553248 GGGGGAAATGGTAAAACTGGC 59.447 52.381 0.00 0.00 0.00 4.85
2066 5343 2.701423 GCTAGGAAGAAAGTCTAGGGGG 59.299 54.545 0.00 0.00 33.15 5.40
2067 5344 3.639561 GAGCTAGGAAGAAAGTCTAGGGG 59.360 52.174 0.00 0.00 33.15 4.79
2068 5345 3.639561 GGAGCTAGGAAGAAAGTCTAGGG 59.360 52.174 0.00 0.00 33.15 3.53
2069 5346 3.316868 CGGAGCTAGGAAGAAAGTCTAGG 59.683 52.174 0.00 0.00 33.15 3.02
2070 5347 4.561735 CGGAGCTAGGAAGAAAGTCTAG 57.438 50.000 0.00 0.00 35.02 2.43
2087 5364 3.052082 CTGCAACCACTGGCGGAG 61.052 66.667 0.00 0.00 38.70 4.63
2088 5365 3.872603 ACTGCAACCACTGGCGGA 61.873 61.111 0.00 0.00 39.67 5.54
2089 5366 3.663176 CACTGCAACCACTGGCGG 61.663 66.667 0.00 0.00 42.11 6.13
2090 5367 1.968017 ATCACTGCAACCACTGGCG 60.968 57.895 0.00 0.00 0.00 5.69
2091 5368 0.890542 TCATCACTGCAACCACTGGC 60.891 55.000 0.00 0.00 0.00 4.85
2092 5369 1.162698 CTCATCACTGCAACCACTGG 58.837 55.000 0.00 0.00 0.00 4.00
2093 5370 2.174363 TCTCATCACTGCAACCACTG 57.826 50.000 0.00 0.00 0.00 3.66
2094 5371 2.936919 TTCTCATCACTGCAACCACT 57.063 45.000 0.00 0.00 0.00 4.00
2095 5372 5.627499 TTATTTCTCATCACTGCAACCAC 57.373 39.130 0.00 0.00 0.00 4.16
2096 5373 5.945191 TGATTATTTCTCATCACTGCAACCA 59.055 36.000 0.00 0.00 0.00 3.67
2097 5374 6.094603 ACTGATTATTTCTCATCACTGCAACC 59.905 38.462 0.00 0.00 0.00 3.77
2098 5375 6.965500 CACTGATTATTTCTCATCACTGCAAC 59.035 38.462 0.00 0.00 0.00 4.17
2104 5381 6.441093 TTGCCACTGATTATTTCTCATCAC 57.559 37.500 0.00 0.00 0.00 3.06
2108 5385 6.359804 AGCTATTGCCACTGATTATTTCTCA 58.640 36.000 0.00 0.00 40.80 3.27
2372 5686 7.770801 TCCATTCACAGTTCTATTGTATTCG 57.229 36.000 0.00 0.00 0.00 3.34
2373 5687 9.941664 CATTCCATTCACAGTTCTATTGTATTC 57.058 33.333 0.00 0.00 0.00 1.75
2419 5733 2.417097 GTTTTGGGCGCTGCTGTT 59.583 55.556 7.64 0.00 0.00 3.16
2460 5776 6.947733 AGGAAAAATATGTTCCAGTGATGTCA 59.052 34.615 16.87 0.00 46.01 3.58
2477 5793 9.090692 CAATAATTCAATTCGCAGAGGAAAAAT 57.909 29.630 0.00 0.00 38.43 1.82
2481 5797 7.389803 TTCAATAATTCAATTCGCAGAGGAA 57.610 32.000 0.00 0.00 38.43 3.36
2483 5799 6.183360 ACCTTCAATAATTCAATTCGCAGAGG 60.183 38.462 0.00 0.00 38.43 3.69
2484 5800 6.690098 CACCTTCAATAATTCAATTCGCAGAG 59.310 38.462 0.00 0.00 38.43 3.35
2488 5804 7.992180 ATTCACCTTCAATAATTCAATTCGC 57.008 32.000 0.00 0.00 0.00 4.70
2507 5823 4.449743 TCGTTTGCTACACAGGTAATTCAC 59.550 41.667 0.00 0.00 0.00 3.18
2508 5824 4.633175 TCGTTTGCTACACAGGTAATTCA 58.367 39.130 0.00 0.00 0.00 2.57
2509 5825 4.689345 ACTCGTTTGCTACACAGGTAATTC 59.311 41.667 0.00 0.00 0.00 2.17
2510 5826 4.451096 CACTCGTTTGCTACACAGGTAATT 59.549 41.667 0.00 0.00 0.00 1.40
2511 5827 3.994392 CACTCGTTTGCTACACAGGTAAT 59.006 43.478 0.00 0.00 0.00 1.89
2512 5828 3.386486 CACTCGTTTGCTACACAGGTAA 58.614 45.455 0.00 0.00 0.00 2.85
2513 5829 2.288579 CCACTCGTTTGCTACACAGGTA 60.289 50.000 0.00 0.00 0.00 3.08
2516 5832 0.512952 GCCACTCGTTTGCTACACAG 59.487 55.000 0.00 0.00 0.00 3.66
2517 5833 0.105964 AGCCACTCGTTTGCTACACA 59.894 50.000 0.00 0.00 32.56 3.72
2518 5834 2.914379 AGCCACTCGTTTGCTACAC 58.086 52.632 0.00 0.00 32.56 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.