Multiple sequence alignment - TraesCS7A01G465100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G465100 chr7A 100.000 5701 0 0 707 6407 661585350 661579650 0.000000e+00 10528.0
1 TraesCS7A01G465100 chr7A 100.000 410 0 0 1 410 661586056 661585647 0.000000e+00 758.0
2 TraesCS7A01G465100 chr7A 82.169 415 55 11 1 402 559382682 559383090 7.960000e-89 339.0
3 TraesCS7A01G465100 chr7A 81.181 271 19 14 1203 1469 518745677 518745435 8.480000e-44 189.0
4 TraesCS7A01G465100 chr7D 95.556 4726 163 29 829 5530 572547217 572542515 0.000000e+00 7520.0
5 TraesCS7A01G465100 chr7D 82.325 628 39 33 5807 6407 572542307 572541725 4.490000e-131 479.0
6 TraesCS7A01G465100 chr7D 87.042 409 42 7 1 408 187247535 187247137 9.800000e-123 451.0
7 TraesCS7A01G465100 chr7D 85.645 411 51 7 1 408 463896497 463896092 5.940000e-115 425.0
8 TraesCS7A01G465100 chr7D 82.927 410 52 5 1 408 213226 212833 2.840000e-93 353.0
9 TraesCS7A01G465100 chr7D 75.735 408 63 22 5 408 464218753 464218378 8.540000e-39 172.0
10 TraesCS7A01G465100 chr7B 95.058 4715 176 23 829 5530 629779173 629783843 0.000000e+00 7363.0
11 TraesCS7A01G465100 chr7B 87.013 308 14 8 5954 6261 629784161 629784442 2.230000e-84 324.0
12 TraesCS7A01G465100 chr7B 81.181 271 19 13 1203 1469 664313261 664313503 8.480000e-44 189.0
13 TraesCS7A01G465100 chr7B 77.914 163 15 16 6260 6407 629784465 629784621 1.480000e-11 82.4
14 TraesCS7A01G465100 chr1A 85.678 391 45 7 1 388 254379366 254379748 1.000000e-107 401.0
15 TraesCS7A01G465100 chr1A 80.443 271 21 16 1203 1469 320287940 320287698 1.840000e-40 178.0
16 TraesCS7A01G465100 chr3D 84.314 408 44 11 2 408 115010925 115010537 1.300000e-101 381.0
17 TraesCS7A01G465100 chr1B 83.538 407 55 9 4 408 267923739 267923343 2.820000e-98 370.0
18 TraesCS7A01G465100 chr1B 80.203 394 57 9 17 408 388755040 388754666 6.330000e-70 276.0
19 TraesCS7A01G465100 chr3B 82.432 370 53 9 41 405 630392745 630393107 4.820000e-81 313.0
20 TraesCS7A01G465100 chr5D 80.732 410 63 15 1 404 229325894 229325495 8.070000e-79 305.0
21 TraesCS7A01G465100 chr6A 81.550 271 18 16 1203 1469 58005974 58005732 1.820000e-45 195.0
22 TraesCS7A01G465100 chr6B 80.443 271 20 14 1203 1469 48106360 48106119 6.600000e-40 176.0
23 TraesCS7A01G465100 chr5B 80.443 271 20 14 1203 1469 607044447 607044688 6.600000e-40 176.0
24 TraesCS7A01G465100 chr5B 80.074 271 21 14 1203 1469 607101282 607101523 3.070000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G465100 chr7A 661579650 661586056 6406 True 5643.0 10528 100.000000 1 6407 2 chr7A.!!$R2 6406
1 TraesCS7A01G465100 chr7D 572541725 572547217 5492 True 3999.5 7520 88.940500 829 6407 2 chr7D.!!$R5 5578
2 TraesCS7A01G465100 chr7B 629779173 629784621 5448 False 2589.8 7363 86.661667 829 6407 3 chr7B.!!$F2 5578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
228 229 0.036306 ATGACGGCGAAAGGGAAAGT 59.964 50.0 16.62 0.0 0.00 2.66 F
738 739 0.108585 TGAGTTGACCCCTTGTGCTC 59.891 55.0 0.00 0.0 0.00 4.26 F
752 753 0.251073 GTGCTCGCTTAAGGGGGTAA 59.749 55.0 19.57 7.0 0.00 2.85 F
764 765 0.319641 GGGGGTAAATAGCTCTCGCG 60.320 60.0 0.00 0.0 42.32 5.87 F
1545 1552 0.322816 ATGAAGCAGCCACCGATTGT 60.323 50.0 0.00 0.0 0.00 2.71 F
2975 2986 0.179108 AGCATTCTTACCGGTCGCTC 60.179 55.0 12.40 0.0 0.00 5.03 F
4440 4453 0.458669 TCATTCTCGTAAGTCGGCCC 59.541 55.0 0.00 0.0 40.32 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1609 1616 1.193462 CCCCATTCAAGGCAAAGGCA 61.193 55.000 0.00 0.00 43.71 4.75 R
1863 1872 1.742831 GGTCACAACAAAGAGTGCACA 59.257 47.619 21.04 0.00 35.76 4.57 R
1968 1977 2.366533 CTCACATCTGCTGCTTGGATT 58.633 47.619 0.00 0.00 0.00 3.01 R
2355 2364 2.426522 TCAGTGGCAAGACAGTAATGC 58.573 47.619 0.00 2.06 39.33 3.56 R
3318 3331 0.469705 TGTCATGGGGCTGCTTTTGT 60.470 50.000 0.00 0.00 0.00 2.83 R
4762 4776 0.747852 TATGGCTATGAACGTGCGGA 59.252 50.000 0.00 0.00 0.00 5.54 R
5912 5968 0.033796 CCATCCCATGTTGCTCCAGT 60.034 55.000 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.263941 GCAAATCGCCGAACACCT 58.736 55.556 0.00 0.00 32.94 4.00
30 31 1.579429 GCAAATCGCCGAACACCTT 59.421 52.632 0.00 0.00 32.94 3.50
31 32 0.729140 GCAAATCGCCGAACACCTTG 60.729 55.000 0.00 0.00 32.94 3.61
32 33 0.729140 CAAATCGCCGAACACCTTGC 60.729 55.000 0.00 0.00 0.00 4.01
39 40 4.025401 GAACACCTTGCGGGCGTG 62.025 66.667 0.00 0.00 39.10 5.34
65 66 4.971125 GCAGCCGCCGGTATCCTC 62.971 72.222 4.45 0.00 0.00 3.71
66 67 4.647615 CAGCCGCCGGTATCCTCG 62.648 72.222 4.45 0.00 0.00 4.63
70 71 2.981909 CGCCGGTATCCTCGCCTA 60.982 66.667 1.90 0.00 0.00 3.93
71 72 2.341101 CGCCGGTATCCTCGCCTAT 61.341 63.158 1.90 0.00 0.00 2.57
72 73 1.215647 GCCGGTATCCTCGCCTATG 59.784 63.158 1.90 0.00 0.00 2.23
73 74 1.533469 GCCGGTATCCTCGCCTATGT 61.533 60.000 1.90 0.00 0.00 2.29
74 75 0.243907 CCGGTATCCTCGCCTATGTG 59.756 60.000 0.00 0.00 0.00 3.21
75 76 0.243907 CGGTATCCTCGCCTATGTGG 59.756 60.000 0.00 0.00 39.35 4.17
76 77 1.339097 GGTATCCTCGCCTATGTGGT 58.661 55.000 0.00 0.00 38.35 4.16
77 78 1.272769 GGTATCCTCGCCTATGTGGTC 59.727 57.143 0.00 0.00 38.35 4.02
78 79 1.068472 GTATCCTCGCCTATGTGGTCG 60.068 57.143 0.00 0.00 38.35 4.79
79 80 1.464376 ATCCTCGCCTATGTGGTCGG 61.464 60.000 0.00 0.00 38.35 4.79
80 81 2.125326 CCTCGCCTATGTGGTCGGA 61.125 63.158 0.00 0.00 38.35 4.55
81 82 1.360551 CTCGCCTATGTGGTCGGAG 59.639 63.158 0.00 0.00 38.35 4.63
82 83 2.279517 CGCCTATGTGGTCGGAGC 60.280 66.667 0.00 0.00 38.35 4.70
83 84 2.109181 GCCTATGTGGTCGGAGCC 59.891 66.667 4.54 0.00 38.35 4.70
84 85 2.822399 CCTATGTGGTCGGAGCCC 59.178 66.667 4.54 0.00 0.00 5.19
85 86 1.762460 CCTATGTGGTCGGAGCCCT 60.762 63.158 4.54 0.00 0.00 5.19
86 87 1.443407 CTATGTGGTCGGAGCCCTG 59.557 63.158 4.54 0.00 0.00 4.45
87 88 2.032860 CTATGTGGTCGGAGCCCTGG 62.033 65.000 4.54 0.00 0.00 4.45
88 89 2.523740 TATGTGGTCGGAGCCCTGGA 62.524 60.000 4.54 0.00 0.00 3.86
89 90 3.319198 GTGGTCGGAGCCCTGGAA 61.319 66.667 4.54 0.00 0.00 3.53
90 91 2.528127 TGGTCGGAGCCCTGGAAA 60.528 61.111 4.54 0.00 0.00 3.13
91 92 2.269241 GGTCGGAGCCCTGGAAAG 59.731 66.667 0.00 0.00 0.00 2.62
92 93 2.436824 GTCGGAGCCCTGGAAAGC 60.437 66.667 0.00 0.00 0.00 3.51
93 94 2.607750 TCGGAGCCCTGGAAAGCT 60.608 61.111 0.00 0.00 43.55 3.74
96 97 2.821810 GAGCCCTGGAAAGCTCGC 60.822 66.667 7.52 0.00 45.44 5.03
97 98 4.416738 AGCCCTGGAAAGCTCGCC 62.417 66.667 0.00 0.00 32.71 5.54
99 100 4.033776 CCCTGGAAAGCTCGCCCA 62.034 66.667 0.00 2.49 0.00 5.36
100 101 2.437359 CCTGGAAAGCTCGCCCAG 60.437 66.667 17.39 17.39 45.28 4.45
101 102 2.437359 CTGGAAAGCTCGCCCAGG 60.437 66.667 16.84 3.78 42.75 4.45
102 103 2.927856 TGGAAAGCTCGCCCAGGA 60.928 61.111 2.66 0.00 0.00 3.86
103 104 2.124942 GGAAAGCTCGCCCAGGAG 60.125 66.667 0.00 0.00 37.11 3.69
112 113 3.157252 GCCCAGGAGCGAGATGGA 61.157 66.667 0.00 0.00 36.09 3.41
113 114 3.136750 CCCAGGAGCGAGATGGAG 58.863 66.667 0.00 0.00 36.09 3.86
114 115 2.506061 CCCAGGAGCGAGATGGAGG 61.506 68.421 0.00 0.00 36.09 4.30
115 116 2.420890 CAGGAGCGAGATGGAGGC 59.579 66.667 0.00 0.00 0.00 4.70
116 117 2.132996 CAGGAGCGAGATGGAGGCT 61.133 63.158 0.00 0.00 40.29 4.58
117 118 2.132996 AGGAGCGAGATGGAGGCTG 61.133 63.158 0.00 0.00 37.10 4.85
118 119 2.430610 GGAGCGAGATGGAGGCTGT 61.431 63.158 0.00 0.00 37.10 4.40
119 120 1.067250 GAGCGAGATGGAGGCTGTC 59.933 63.158 0.00 0.00 37.10 3.51
120 121 1.670949 GAGCGAGATGGAGGCTGTCA 61.671 60.000 0.00 0.00 37.10 3.58
121 122 1.520342 GCGAGATGGAGGCTGTCAC 60.520 63.158 0.00 0.00 0.00 3.67
122 123 1.226802 CGAGATGGAGGCTGTCACG 60.227 63.158 0.00 0.00 0.00 4.35
123 124 1.142748 GAGATGGAGGCTGTCACGG 59.857 63.158 0.00 0.00 0.00 4.94
124 125 1.608717 GAGATGGAGGCTGTCACGGT 61.609 60.000 0.00 0.00 0.00 4.83
125 126 1.448540 GATGGAGGCTGTCACGGTG 60.449 63.158 0.56 0.56 0.00 4.94
126 127 1.888436 GATGGAGGCTGTCACGGTGA 61.888 60.000 6.76 6.76 0.00 4.02
127 128 1.480212 ATGGAGGCTGTCACGGTGAA 61.480 55.000 13.23 2.86 0.00 3.18
128 129 1.070786 GGAGGCTGTCACGGTGAAA 59.929 57.895 13.23 6.62 0.00 2.69
129 130 0.534203 GGAGGCTGTCACGGTGAAAA 60.534 55.000 13.23 3.52 0.00 2.29
130 131 0.586802 GAGGCTGTCACGGTGAAAAC 59.413 55.000 13.23 2.42 0.00 2.43
131 132 0.818040 AGGCTGTCACGGTGAAAACC 60.818 55.000 13.23 12.54 0.00 3.27
132 133 0.818040 GGCTGTCACGGTGAAAACCT 60.818 55.000 13.23 0.00 0.00 3.50
133 134 0.586802 GCTGTCACGGTGAAAACCTC 59.413 55.000 13.23 0.00 0.00 3.85
134 135 1.810412 GCTGTCACGGTGAAAACCTCT 60.810 52.381 13.23 0.00 0.00 3.69
135 136 2.135933 CTGTCACGGTGAAAACCTCTC 58.864 52.381 13.23 0.00 0.00 3.20
136 137 1.760613 TGTCACGGTGAAAACCTCTCT 59.239 47.619 13.23 0.00 0.00 3.10
137 138 2.169769 TGTCACGGTGAAAACCTCTCTT 59.830 45.455 13.23 0.00 0.00 2.85
138 139 3.203716 GTCACGGTGAAAACCTCTCTTT 58.796 45.455 13.23 0.00 0.00 2.52
139 140 3.247886 GTCACGGTGAAAACCTCTCTTTC 59.752 47.826 13.23 0.00 34.09 2.62
140 141 2.548480 CACGGTGAAAACCTCTCTTTCC 59.452 50.000 0.74 0.00 32.79 3.13
141 142 1.798813 CGGTGAAAACCTCTCTTTCCG 59.201 52.381 0.00 0.00 32.79 4.30
142 143 2.547218 CGGTGAAAACCTCTCTTTCCGA 60.547 50.000 0.00 0.00 32.79 4.55
143 144 2.806818 GGTGAAAACCTCTCTTTCCGAC 59.193 50.000 0.00 0.00 32.79 4.79
144 145 2.475487 GTGAAAACCTCTCTTTCCGACG 59.525 50.000 0.00 0.00 32.79 5.12
145 146 2.067013 GAAAACCTCTCTTTCCGACGG 58.933 52.381 7.84 7.84 0.00 4.79
146 147 0.320697 AAACCTCTCTTTCCGACGGG 59.679 55.000 15.25 0.00 0.00 5.28
147 148 1.542187 AACCTCTCTTTCCGACGGGG 61.542 60.000 15.25 7.82 37.02 5.73
148 149 1.681327 CCTCTCTTTCCGACGGGGA 60.681 63.158 15.25 9.25 45.40 4.81
155 156 3.794481 TCCGACGGGGAAATGACA 58.206 55.556 15.25 0.00 43.62 3.58
156 157 2.292866 TCCGACGGGGAAATGACAT 58.707 52.632 15.25 0.00 43.62 3.06
157 158 0.616371 TCCGACGGGGAAATGACATT 59.384 50.000 15.25 0.00 43.62 2.71
158 159 1.003812 TCCGACGGGGAAATGACATTT 59.996 47.619 15.25 13.24 43.62 2.32
159 160 1.400494 CCGACGGGGAAATGACATTTC 59.600 52.381 26.22 26.22 46.05 2.17
160 161 2.356135 CGACGGGGAAATGACATTTCT 58.644 47.619 30.39 17.08 46.03 2.52
161 162 3.527533 CGACGGGGAAATGACATTTCTA 58.472 45.455 30.39 0.00 46.03 2.10
162 163 3.555956 CGACGGGGAAATGACATTTCTAG 59.444 47.826 30.39 24.29 46.03 2.43
163 164 3.279434 ACGGGGAAATGACATTTCTAGC 58.721 45.455 30.39 18.83 46.03 3.42
164 165 2.287915 CGGGGAAATGACATTTCTAGCG 59.712 50.000 30.39 10.16 46.03 4.26
165 166 2.618709 GGGGAAATGACATTTCTAGCGG 59.381 50.000 30.39 0.00 46.03 5.52
166 167 2.033424 GGGAAATGACATTTCTAGCGGC 59.967 50.000 30.39 17.71 46.03 6.53
167 168 2.286418 GGAAATGACATTTCTAGCGGCG 60.286 50.000 30.39 0.51 46.03 6.46
168 169 1.299541 AATGACATTTCTAGCGGCGG 58.700 50.000 9.78 0.00 0.00 6.13
169 170 0.464036 ATGACATTTCTAGCGGCGGA 59.536 50.000 9.78 0.00 0.00 5.54
170 171 0.179111 TGACATTTCTAGCGGCGGAG 60.179 55.000 9.78 0.00 0.00 4.63
185 186 4.687215 GAGCAGCGACTGTGGGCA 62.687 66.667 8.32 0.00 33.43 5.36
188 189 4.320456 CAGCGACTGTGGGCAGGT 62.320 66.667 3.65 0.00 46.62 4.00
189 190 4.320456 AGCGACTGTGGGCAGGTG 62.320 66.667 3.65 0.00 46.62 4.00
191 192 4.704833 CGACTGTGGGCAGGTGGG 62.705 72.222 0.00 0.00 46.62 4.61
192 193 4.351054 GACTGTGGGCAGGTGGGG 62.351 72.222 0.00 0.00 46.62 4.96
210 211 4.221422 CCACGCCGGGATCGACAT 62.221 66.667 2.18 0.00 39.00 3.06
211 212 2.961721 CACGCCGGGATCGACATG 60.962 66.667 2.18 0.00 39.00 3.21
212 213 3.144871 ACGCCGGGATCGACATGA 61.145 61.111 2.18 0.00 39.00 3.07
213 214 2.658593 CGCCGGGATCGACATGAC 60.659 66.667 2.18 0.00 39.00 3.06
214 215 2.658593 GCCGGGATCGACATGACG 60.659 66.667 11.41 11.41 39.00 4.35
215 216 2.027605 CCGGGATCGACATGACGG 59.972 66.667 17.11 6.62 39.00 4.79
216 217 2.658593 CGGGATCGACATGACGGC 60.659 66.667 17.11 9.72 39.00 5.68
217 218 2.658593 GGGATCGACATGACGGCG 60.659 66.667 17.11 4.80 0.00 6.46
218 219 2.411701 GGATCGACATGACGGCGA 59.588 61.111 16.62 11.52 38.51 5.54
219 220 1.226859 GGATCGACATGACGGCGAA 60.227 57.895 16.62 0.57 37.60 4.70
220 221 0.804544 GGATCGACATGACGGCGAAA 60.805 55.000 16.62 0.11 37.60 3.46
221 222 0.572590 GATCGACATGACGGCGAAAG 59.427 55.000 16.62 2.56 37.60 2.62
222 223 0.806102 ATCGACATGACGGCGAAAGG 60.806 55.000 16.62 5.16 37.60 3.11
223 224 2.452813 CGACATGACGGCGAAAGGG 61.453 63.158 16.62 0.90 0.00 3.95
224 225 1.079405 GACATGACGGCGAAAGGGA 60.079 57.895 16.62 0.00 0.00 4.20
225 226 0.672401 GACATGACGGCGAAAGGGAA 60.672 55.000 16.62 0.00 0.00 3.97
226 227 0.250553 ACATGACGGCGAAAGGGAAA 60.251 50.000 16.62 0.00 0.00 3.13
227 228 0.447801 CATGACGGCGAAAGGGAAAG 59.552 55.000 16.62 0.00 0.00 2.62
228 229 0.036306 ATGACGGCGAAAGGGAAAGT 59.964 50.000 16.62 0.00 0.00 2.66
229 230 0.882927 TGACGGCGAAAGGGAAAGTG 60.883 55.000 16.62 0.00 0.00 3.16
230 231 1.574702 GACGGCGAAAGGGAAAGTGG 61.575 60.000 16.62 0.00 0.00 4.00
231 232 2.962569 GGCGAAAGGGAAAGTGGC 59.037 61.111 0.00 0.00 0.00 5.01
232 233 2.561373 GCGAAAGGGAAAGTGGCG 59.439 61.111 0.00 0.00 0.00 5.69
233 234 2.258726 GCGAAAGGGAAAGTGGCGT 61.259 57.895 0.00 0.00 0.00 5.68
234 235 1.866925 CGAAAGGGAAAGTGGCGTC 59.133 57.895 0.00 0.00 0.00 5.19
235 236 0.882927 CGAAAGGGAAAGTGGCGTCA 60.883 55.000 0.00 0.00 0.00 4.35
236 237 1.534729 GAAAGGGAAAGTGGCGTCAT 58.465 50.000 0.00 0.00 0.00 3.06
237 238 1.200020 GAAAGGGAAAGTGGCGTCATG 59.800 52.381 0.00 0.00 0.00 3.07
238 239 0.110486 AAGGGAAAGTGGCGTCATGT 59.890 50.000 0.00 0.00 0.00 3.21
239 240 0.606401 AGGGAAAGTGGCGTCATGTG 60.606 55.000 0.00 0.00 0.00 3.21
240 241 1.586154 GGGAAAGTGGCGTCATGTGG 61.586 60.000 0.00 0.00 0.00 4.17
241 242 1.210155 GAAAGTGGCGTCATGTGGC 59.790 57.895 0.00 7.19 0.00 5.01
262 263 4.891727 CGGGTCGAATCTGGGCGG 62.892 72.222 0.00 0.00 0.00 6.13
263 264 3.782443 GGGTCGAATCTGGGCGGT 61.782 66.667 0.00 0.00 0.00 5.68
264 265 2.511600 GGTCGAATCTGGGCGGTG 60.512 66.667 0.00 0.00 0.00 4.94
265 266 2.577059 GTCGAATCTGGGCGGTGA 59.423 61.111 0.00 0.00 0.00 4.02
266 267 1.079405 GTCGAATCTGGGCGGTGAA 60.079 57.895 0.00 0.00 0.00 3.18
267 268 0.672401 GTCGAATCTGGGCGGTGAAA 60.672 55.000 0.00 0.00 0.00 2.69
268 269 0.391130 TCGAATCTGGGCGGTGAAAG 60.391 55.000 0.00 0.00 0.00 2.62
269 270 1.369091 CGAATCTGGGCGGTGAAAGG 61.369 60.000 0.00 0.00 0.00 3.11
270 271 1.657751 GAATCTGGGCGGTGAAAGGC 61.658 60.000 0.00 0.00 0.00 4.35
271 272 3.976701 ATCTGGGCGGTGAAAGGCG 62.977 63.158 0.00 0.00 34.74 5.52
273 274 4.572571 TGGGCGGTGAAAGGCGTT 62.573 61.111 0.00 0.00 34.74 4.84
274 275 3.292159 GGGCGGTGAAAGGCGTTT 61.292 61.111 3.62 3.62 34.74 3.60
275 276 2.254350 GGCGGTGAAAGGCGTTTC 59.746 61.111 21.91 21.91 42.27 2.78
276 277 2.258726 GGCGGTGAAAGGCGTTTCT 61.259 57.895 26.86 0.00 42.39 2.52
277 278 1.206831 GCGGTGAAAGGCGTTTCTC 59.793 57.895 26.86 23.45 42.39 2.87
278 279 1.491563 CGGTGAAAGGCGTTTCTCG 59.508 57.895 26.86 24.50 42.39 4.04
288 289 3.955429 CGTTTCTCGCCTGACAATG 57.045 52.632 0.00 0.00 0.00 2.82
289 290 1.428448 CGTTTCTCGCCTGACAATGA 58.572 50.000 0.00 0.00 0.00 2.57
290 291 2.002586 CGTTTCTCGCCTGACAATGAT 58.997 47.619 0.00 0.00 0.00 2.45
291 292 2.222886 CGTTTCTCGCCTGACAATGATG 60.223 50.000 0.00 0.00 0.00 3.07
292 293 2.028420 TTCTCGCCTGACAATGATGG 57.972 50.000 0.00 0.00 0.00 3.51
293 294 0.462581 TCTCGCCTGACAATGATGGC 60.463 55.000 0.00 0.00 41.76 4.40
294 295 1.442526 CTCGCCTGACAATGATGGCC 61.443 60.000 0.00 0.00 42.15 5.36
295 296 2.484062 CGCCTGACAATGATGGCCC 61.484 63.158 0.00 0.00 42.15 5.80
296 297 1.380246 GCCTGACAATGATGGCCCA 60.380 57.895 0.00 0.00 39.49 5.36
297 298 0.971959 GCCTGACAATGATGGCCCAA 60.972 55.000 0.00 0.00 39.49 4.12
298 299 1.108776 CCTGACAATGATGGCCCAAG 58.891 55.000 0.00 0.00 31.48 3.61
299 300 0.458669 CTGACAATGATGGCCCAAGC 59.541 55.000 0.00 0.00 31.48 4.01
300 301 1.314534 TGACAATGATGGCCCAAGCG 61.315 55.000 0.00 0.00 41.24 4.68
301 302 2.105528 CAATGATGGCCCAAGCGC 59.894 61.111 0.00 0.00 41.24 5.92
309 310 3.874873 GCCCAAGCGCCATTTTTC 58.125 55.556 2.29 0.00 0.00 2.29
310 311 1.741401 GCCCAAGCGCCATTTTTCC 60.741 57.895 2.29 0.00 0.00 3.13
311 312 1.974543 CCCAAGCGCCATTTTTCCT 59.025 52.632 2.29 0.00 0.00 3.36
312 313 0.321346 CCCAAGCGCCATTTTTCCTT 59.679 50.000 2.29 0.00 0.00 3.36
313 314 1.672737 CCCAAGCGCCATTTTTCCTTC 60.673 52.381 2.29 0.00 0.00 3.46
314 315 1.672737 CCAAGCGCCATTTTTCCTTCC 60.673 52.381 2.29 0.00 0.00 3.46
315 316 0.243636 AAGCGCCATTTTTCCTTCCG 59.756 50.000 2.29 0.00 0.00 4.30
316 317 1.805539 GCGCCATTTTTCCTTCCGC 60.806 57.895 0.00 0.00 0.00 5.54
317 318 1.883021 CGCCATTTTTCCTTCCGCT 59.117 52.632 0.00 0.00 0.00 5.52
318 319 0.456653 CGCCATTTTTCCTTCCGCTG 60.457 55.000 0.00 0.00 0.00 5.18
319 320 0.108662 GCCATTTTTCCTTCCGCTGG 60.109 55.000 0.00 0.00 0.00 4.85
320 321 1.544724 CCATTTTTCCTTCCGCTGGA 58.455 50.000 0.00 0.00 0.00 3.86
321 322 1.474077 CCATTTTTCCTTCCGCTGGAG 59.526 52.381 0.00 0.00 34.76 3.86
322 323 1.135286 CATTTTTCCTTCCGCTGGAGC 60.135 52.381 0.00 0.00 34.76 4.70
323 324 0.893727 TTTTTCCTTCCGCTGGAGCC 60.894 55.000 0.00 0.00 37.91 4.70
324 325 2.764637 TTTTCCTTCCGCTGGAGCCC 62.765 60.000 0.00 0.00 37.91 5.19
330 331 4.447342 CCGCTGGAGCCCCCAAAT 62.447 66.667 0.00 0.00 46.07 2.32
331 332 3.142838 CGCTGGAGCCCCCAAATG 61.143 66.667 0.00 0.00 46.07 2.32
332 333 3.464494 GCTGGAGCCCCCAAATGC 61.464 66.667 0.00 0.00 46.07 3.56
333 334 2.761213 CTGGAGCCCCCAAATGCC 60.761 66.667 0.00 0.00 46.07 4.40
334 335 4.397010 TGGAGCCCCCAAATGCCC 62.397 66.667 0.00 0.00 43.29 5.36
369 370 3.140814 GGTTCGCCCTGGGATTGC 61.141 66.667 19.27 0.00 0.00 3.56
370 371 2.044946 GTTCGCCCTGGGATTGCT 60.045 61.111 19.27 0.00 0.00 3.91
371 372 2.045045 TTCGCCCTGGGATTGCTG 60.045 61.111 19.27 0.00 0.00 4.41
372 373 3.643595 TTCGCCCTGGGATTGCTGG 62.644 63.158 19.27 0.00 0.00 4.85
375 376 4.847367 CCCTGGGATTGCTGGGCC 62.847 72.222 7.01 0.00 32.49 5.80
376 377 4.064768 CCTGGGATTGCTGGGCCA 62.065 66.667 5.85 5.85 0.00 5.36
377 378 2.037687 CTGGGATTGCTGGGCCAA 59.962 61.111 8.04 0.00 0.00 4.52
378 379 1.610086 CTGGGATTGCTGGGCCAAA 60.610 57.895 8.04 0.00 0.00 3.28
379 380 1.152161 TGGGATTGCTGGGCCAAAA 60.152 52.632 8.04 5.64 0.00 2.44
380 381 0.765903 TGGGATTGCTGGGCCAAAAA 60.766 50.000 8.04 5.22 0.00 1.94
394 395 4.504112 AAAAATGGGCCGAACCGA 57.496 50.000 0.00 0.00 40.62 4.69
395 396 1.961378 AAAAATGGGCCGAACCGAC 59.039 52.632 0.00 0.00 40.62 4.79
396 397 1.858372 AAAAATGGGCCGAACCGACG 61.858 55.000 0.00 0.00 40.62 5.12
736 737 1.398692 TTTGAGTTGACCCCTTGTGC 58.601 50.000 0.00 0.00 0.00 4.57
737 738 0.550914 TTGAGTTGACCCCTTGTGCT 59.449 50.000 0.00 0.00 0.00 4.40
738 739 0.108585 TGAGTTGACCCCTTGTGCTC 59.891 55.000 0.00 0.00 0.00 4.26
739 740 0.951040 GAGTTGACCCCTTGTGCTCG 60.951 60.000 0.00 0.00 0.00 5.03
740 741 2.281484 TTGACCCCTTGTGCTCGC 60.281 61.111 0.00 0.00 0.00 5.03
741 742 2.818169 TTGACCCCTTGTGCTCGCT 61.818 57.895 0.00 0.00 0.00 4.93
742 743 2.032681 GACCCCTTGTGCTCGCTT 59.967 61.111 0.00 0.00 0.00 4.68
743 744 1.295423 GACCCCTTGTGCTCGCTTA 59.705 57.895 0.00 0.00 0.00 3.09
744 745 0.321298 GACCCCTTGTGCTCGCTTAA 60.321 55.000 0.00 0.00 0.00 1.85
745 746 0.321653 ACCCCTTGTGCTCGCTTAAG 60.322 55.000 0.00 0.00 0.00 1.85
746 747 1.026718 CCCCTTGTGCTCGCTTAAGG 61.027 60.000 4.29 13.93 39.47 2.69
747 748 2.471255 CCTTGTGCTCGCTTAAGGG 58.529 57.895 13.14 13.14 36.81 3.95
748 749 1.026718 CCTTGTGCTCGCTTAAGGGG 61.027 60.000 18.46 10.79 36.81 4.79
749 750 1.002624 TTGTGCTCGCTTAAGGGGG 60.003 57.895 18.46 16.74 0.00 5.40
750 751 1.774894 TTGTGCTCGCTTAAGGGGGT 61.775 55.000 19.57 0.00 0.00 4.95
751 752 0.905809 TGTGCTCGCTTAAGGGGGTA 60.906 55.000 19.57 13.35 0.00 3.69
752 753 0.251073 GTGCTCGCTTAAGGGGGTAA 59.749 55.000 19.57 7.00 0.00 2.85
753 754 0.985760 TGCTCGCTTAAGGGGGTAAA 59.014 50.000 19.57 4.66 0.00 2.01
754 755 1.562475 TGCTCGCTTAAGGGGGTAAAT 59.438 47.619 19.57 0.00 0.00 1.40
755 756 2.773087 TGCTCGCTTAAGGGGGTAAATA 59.227 45.455 19.57 0.00 0.00 1.40
756 757 3.181458 TGCTCGCTTAAGGGGGTAAATAG 60.181 47.826 19.57 9.04 0.00 1.73
757 758 3.400255 CTCGCTTAAGGGGGTAAATAGC 58.600 50.000 18.46 0.00 0.00 2.97
758 759 3.043418 TCGCTTAAGGGGGTAAATAGCT 58.957 45.455 18.46 0.00 0.00 3.32
759 760 3.070590 TCGCTTAAGGGGGTAAATAGCTC 59.929 47.826 18.46 0.00 0.00 4.09
760 761 3.071167 CGCTTAAGGGGGTAAATAGCTCT 59.929 47.826 11.58 0.00 0.00 4.09
761 762 4.643463 GCTTAAGGGGGTAAATAGCTCTC 58.357 47.826 4.29 0.00 0.00 3.20
762 763 4.799917 GCTTAAGGGGGTAAATAGCTCTCG 60.800 50.000 4.29 0.00 0.00 4.04
763 764 1.049402 AGGGGGTAAATAGCTCTCGC 58.951 55.000 0.00 0.00 0.00 5.03
764 765 0.319641 GGGGGTAAATAGCTCTCGCG 60.320 60.000 0.00 0.00 42.32 5.87
765 766 0.319641 GGGGTAAATAGCTCTCGCGG 60.320 60.000 6.13 0.00 42.32 6.46
766 767 0.319641 GGGTAAATAGCTCTCGCGGG 60.320 60.000 6.13 1.01 42.32 6.13
767 768 0.319641 GGTAAATAGCTCTCGCGGGG 60.320 60.000 5.94 0.00 42.32 5.73
768 769 0.319641 GTAAATAGCTCTCGCGGGGG 60.320 60.000 5.94 2.32 42.32 5.40
769 770 0.468585 TAAATAGCTCTCGCGGGGGA 60.469 55.000 11.96 0.66 42.32 4.81
770 771 1.749334 AAATAGCTCTCGCGGGGGAG 61.749 60.000 24.19 24.19 42.32 4.30
771 772 4.896829 TAGCTCTCGCGGGGGAGG 62.897 72.222 28.43 12.15 42.32 4.30
774 775 3.532155 CTCTCGCGGGGGAGGAAG 61.532 72.222 21.15 0.00 34.74 3.46
781 782 3.339093 GGGGGAGGAAGGGGTGTG 61.339 72.222 0.00 0.00 0.00 3.82
782 783 4.048470 GGGGAGGAAGGGGTGTGC 62.048 72.222 0.00 0.00 0.00 4.57
783 784 4.410400 GGGAGGAAGGGGTGTGCG 62.410 72.222 0.00 0.00 0.00 5.34
784 785 3.637273 GGAGGAAGGGGTGTGCGT 61.637 66.667 0.00 0.00 0.00 5.24
785 786 2.358737 GAGGAAGGGGTGTGCGTG 60.359 66.667 0.00 0.00 0.00 5.34
786 787 4.643387 AGGAAGGGGTGTGCGTGC 62.643 66.667 0.00 0.00 0.00 5.34
800 801 2.746277 GTGCGTGCGGGGAAGAAT 60.746 61.111 0.00 0.00 0.00 2.40
801 802 2.435938 TGCGTGCGGGGAAGAATC 60.436 61.111 0.00 0.00 0.00 2.52
802 803 3.564027 GCGTGCGGGGAAGAATCG 61.564 66.667 0.00 0.00 0.00 3.34
811 812 2.640316 GGGAAGAATCGCCAACCTAT 57.360 50.000 0.00 0.00 32.60 2.57
812 813 2.932261 GGGAAGAATCGCCAACCTATT 58.068 47.619 0.00 0.00 32.60 1.73
813 814 2.618709 GGGAAGAATCGCCAACCTATTG 59.381 50.000 0.00 0.00 35.40 1.90
814 815 3.279434 GGAAGAATCGCCAACCTATTGT 58.721 45.455 0.00 0.00 33.60 2.71
815 816 3.694566 GGAAGAATCGCCAACCTATTGTT 59.305 43.478 0.00 0.00 37.80 2.83
816 817 4.157840 GGAAGAATCGCCAACCTATTGTTT 59.842 41.667 0.00 0.00 34.00 2.83
817 818 5.336451 GGAAGAATCGCCAACCTATTGTTTT 60.336 40.000 0.00 0.00 34.00 2.43
818 819 5.722021 AGAATCGCCAACCTATTGTTTTT 57.278 34.783 0.00 0.00 34.00 1.94
892 893 1.310904 TTGGCCCACGAAACACTTAC 58.689 50.000 0.00 0.00 0.00 2.34
900 901 4.155280 CCCACGAAACACTTACCTATTTGG 59.845 45.833 0.00 0.00 42.93 3.28
929 930 3.123621 CCATTGAAGTTACAGTCGAGCAC 59.876 47.826 0.00 0.00 0.00 4.40
993 997 1.774966 TCCAGACTTCCGGAGACCT 59.225 57.895 3.34 0.00 0.00 3.85
1154 1158 3.168773 GCCTCGCCAGGTAATTTCA 57.831 52.632 0.00 0.00 42.74 2.69
1165 1169 2.238898 AGGTAATTTCACCTCCCTTCCG 59.761 50.000 0.00 0.00 46.34 4.30
1196 1200 1.486726 CTTCACGGCCTAGATTTCCCT 59.513 52.381 0.00 0.00 0.00 4.20
1328 1332 6.889198 TCTTAGCTTGGTGATAGCTTTATGT 58.111 36.000 2.39 0.00 46.42 2.29
1440 1444 2.800544 CGGTTTATATCGGAAGCCACAG 59.199 50.000 0.00 0.00 0.00 3.66
1545 1552 0.322816 ATGAAGCAGCCACCGATTGT 60.323 50.000 0.00 0.00 0.00 2.71
1553 1560 3.792401 CAGCCACCGATTGTCATAGTAA 58.208 45.455 0.00 0.00 0.00 2.24
1580 1587 1.202110 GCAGAATGTCAGCAACCATCG 60.202 52.381 0.00 0.00 39.31 3.84
1693 1700 4.758251 TCTGATGGCCACGGTGCG 62.758 66.667 8.16 0.00 0.00 5.34
1842 1851 7.072177 TGCTGAAGTAAACTGTGCATATTAC 57.928 36.000 0.00 0.00 0.00 1.89
1843 1852 6.878923 TGCTGAAGTAAACTGTGCATATTACT 59.121 34.615 4.22 4.22 39.57 2.24
1844 1853 8.038351 TGCTGAAGTAAACTGTGCATATTACTA 58.962 33.333 9.15 0.00 37.55 1.82
1917 1926 0.531200 ACCAGGAGTCGATTTCGGAC 59.469 55.000 0.00 0.00 40.29 4.79
2100 2109 3.884091 ACCAGTTACCTACAGCTATCTCG 59.116 47.826 0.00 0.00 0.00 4.04
2155 2164 1.444553 GTGACGGCGAGAGGTTCAG 60.445 63.158 16.62 0.00 0.00 3.02
2239 2248 4.600062 TCTGCAGAGTTACACTCCTGATA 58.400 43.478 13.74 0.00 46.18 2.15
2355 2364 0.541863 ACCTGATGGGGAAGTTAGCG 59.458 55.000 0.00 0.00 40.03 4.26
2424 2433 3.432326 GGCTGTATGCTGCTTTAGGTACT 60.432 47.826 12.10 0.00 42.14 2.73
2603 2614 2.026822 AGATTTGTGAGCTCGTGGGAAT 60.027 45.455 9.64 4.92 0.00 3.01
2889 2900 0.600255 GGTGTCGTACTGCACTGCTT 60.600 55.000 13.72 0.00 36.03 3.91
2975 2986 0.179108 AGCATTCTTACCGGTCGCTC 60.179 55.000 12.40 0.00 0.00 5.03
3318 3331 3.974535 TGGCCACAGATGTTATGCA 57.025 47.368 0.00 0.00 0.00 3.96
3604 3617 7.289317 TCACGACCTTACCATAATCTCCTTAAT 59.711 37.037 0.00 0.00 0.00 1.40
3700 3713 2.191128 AAGTCACTTCCCATCTGCAC 57.809 50.000 0.00 0.00 0.00 4.57
3703 3716 2.079925 GTCACTTCCCATCTGCACTTC 58.920 52.381 0.00 0.00 0.00 3.01
4440 4453 0.458669 TCATTCTCGTAAGTCGGCCC 59.541 55.000 0.00 0.00 40.32 5.80
4456 4469 4.100653 GTCGGCCCTAAATTACCTAGTTCT 59.899 45.833 0.00 0.00 0.00 3.01
4495 4508 5.580297 TGAGCAAAACACCATGTTCTTTTTC 59.420 36.000 0.00 0.00 40.14 2.29
4496 4509 5.486526 AGCAAAACACCATGTTCTTTTTCA 58.513 33.333 0.00 0.00 40.14 2.69
4539 4552 3.704061 ACTTACAATGTTTGGTGGCTGTT 59.296 39.130 0.00 0.00 34.12 3.16
4554 4567 2.802247 GGCTGTTGTTTGCTGAAATTCC 59.198 45.455 0.00 0.00 0.00 3.01
4561 4574 6.922957 TGTTGTTTGCTGAAATTCCTTACATC 59.077 34.615 0.00 0.00 0.00 3.06
4565 4578 5.885230 TGCTGAAATTCCTTACATCTGTG 57.115 39.130 0.00 0.00 0.00 3.66
4586 4599 7.385205 TCTGTGCTACATTGTAGAGTTTTCTTC 59.615 37.037 24.65 6.67 34.79 2.87
4589 4602 6.704493 TGCTACATTGTAGAGTTTTCTTCGTT 59.296 34.615 24.65 0.00 34.79 3.85
4745 4759 0.472471 AATGAAGTGTGACCACGGGT 59.528 50.000 0.00 0.00 46.56 5.28
4757 4771 3.361977 ACGGGTCGTGCCAATTGC 61.362 61.111 0.00 0.00 39.18 3.56
4762 4776 1.659794 GTCGTGCCAATTGCCAACT 59.340 52.632 0.00 0.00 40.16 3.16
4794 4808 4.511454 TCATAGCCATAAAATCGTGCTGAC 59.489 41.667 0.00 0.00 33.63 3.51
4840 4854 3.417069 TTATTTCGATCCGGGATGCAT 57.583 42.857 15.70 0.00 0.00 3.96
4915 4930 5.860941 TTAGGCCAACATTTTCACAAAGA 57.139 34.783 5.01 0.00 0.00 2.52
4918 4933 2.794350 GCCAACATTTTCACAAAGACCG 59.206 45.455 0.00 0.00 0.00 4.79
4952 4970 4.569564 TCTTCATGCGATTGATGAGAACTG 59.430 41.667 0.00 0.00 31.52 3.16
4953 4971 3.865446 TCATGCGATTGATGAGAACTGT 58.135 40.909 0.00 0.00 0.00 3.55
4954 4972 3.619929 TCATGCGATTGATGAGAACTGTG 59.380 43.478 0.00 0.00 0.00 3.66
5010 5028 2.979676 TGGCAAGCGCTGGACAAG 60.980 61.111 20.87 1.65 38.60 3.16
5204 5222 1.045350 TCCCTCCTGGAATCGAGCAG 61.045 60.000 0.00 0.00 41.40 4.24
5409 5427 4.021925 GGCGGGCAGAGGTGACTT 62.022 66.667 0.00 0.00 44.43 3.01
5425 5444 3.921021 GTGACTTGAGTACGTGAATCTGG 59.079 47.826 0.00 0.00 0.00 3.86
5432 5451 3.072598 CGTGAATCTGGACGCACG 58.927 61.111 0.00 0.00 46.25 5.34
5435 5454 1.443702 TGAATCTGGACGCACGTCG 60.444 57.895 16.19 4.61 45.41 5.12
5454 5473 0.577269 GCCGTGCGCTTTGTAGATAG 59.423 55.000 9.73 0.00 0.00 2.08
5456 5475 2.743938 CCGTGCGCTTTGTAGATAGAT 58.256 47.619 9.73 0.00 0.00 1.98
5457 5476 3.855895 GCCGTGCGCTTTGTAGATAGATA 60.856 47.826 9.73 0.00 0.00 1.98
5458 5477 3.669122 CCGTGCGCTTTGTAGATAGATAC 59.331 47.826 9.73 0.00 0.00 2.24
5460 5479 4.380087 CGTGCGCTTTGTAGATAGATACAG 59.620 45.833 9.73 0.00 37.01 2.74
5462 5481 4.238514 GCGCTTTGTAGATAGATACAGGG 58.761 47.826 0.00 0.00 37.01 4.45
5463 5482 4.022242 GCGCTTTGTAGATAGATACAGGGA 60.022 45.833 0.00 0.00 37.01 4.20
5464 5483 5.462405 CGCTTTGTAGATAGATACAGGGAC 58.538 45.833 0.00 0.00 37.01 4.46
5465 5484 5.462405 GCTTTGTAGATAGATACAGGGACG 58.538 45.833 0.00 0.00 37.01 4.79
5466 5485 5.565045 GCTTTGTAGATAGATACAGGGACGG 60.565 48.000 0.00 0.00 37.01 4.79
5468 5487 4.649692 TGTAGATAGATACAGGGACGGAC 58.350 47.826 0.00 0.00 32.03 4.79
5469 5488 2.780714 AGATAGATACAGGGACGGACG 58.219 52.381 0.00 0.00 0.00 4.79
5471 5490 0.182061 TAGATACAGGGACGGACGCT 59.818 55.000 0.00 0.00 42.55 5.07
5476 5495 3.374402 AGGGACGGACGCTGTCTG 61.374 66.667 15.31 13.62 43.83 3.51
5479 5498 4.357947 GACGGACGCTGTCTGCCA 62.358 66.667 14.71 0.00 42.17 4.92
5480 5499 3.649277 GACGGACGCTGTCTGCCAT 62.649 63.158 14.71 0.00 42.17 4.40
5481 5500 3.190849 CGGACGCTGTCTGCCATG 61.191 66.667 8.26 0.00 38.78 3.66
5486 5505 1.136147 CGCTGTCTGCCATGCTTTC 59.864 57.895 0.00 0.00 38.78 2.62
5509 5528 6.567959 TCTTCACAGAGAATATGCAGTGTAG 58.432 40.000 0.00 0.00 35.25 2.74
5511 5530 5.895928 TCACAGAGAATATGCAGTGTAGTC 58.104 41.667 0.00 0.00 0.00 2.59
5513 5532 5.747675 CACAGAGAATATGCAGTGTAGTCTG 59.252 44.000 0.79 6.81 38.35 3.51
5515 5534 4.343526 AGAGAATATGCAGTGTAGTCTGGG 59.656 45.833 0.79 0.00 36.12 4.45
5516 5535 4.033709 AGAATATGCAGTGTAGTCTGGGT 58.966 43.478 0.00 0.00 36.12 4.51
5518 5537 5.661312 AGAATATGCAGTGTAGTCTGGGTTA 59.339 40.000 0.00 0.00 36.12 2.85
5520 5539 1.275291 TGCAGTGTAGTCTGGGTTAGC 59.725 52.381 0.00 0.00 36.12 3.09
5521 5540 1.275291 GCAGTGTAGTCTGGGTTAGCA 59.725 52.381 0.00 0.00 36.12 3.49
5522 5541 2.675317 GCAGTGTAGTCTGGGTTAGCAG 60.675 54.545 0.00 0.00 36.12 4.24
5523 5542 2.826128 CAGTGTAGTCTGGGTTAGCAGA 59.174 50.000 0.00 0.00 0.00 4.26
5524 5543 3.093057 AGTGTAGTCTGGGTTAGCAGAG 58.907 50.000 0.00 0.00 0.00 3.35
5525 5544 1.825474 TGTAGTCTGGGTTAGCAGAGC 59.175 52.381 0.00 0.00 0.00 4.09
5526 5545 2.104170 GTAGTCTGGGTTAGCAGAGCT 58.896 52.381 0.00 0.00 43.41 4.09
5527 5546 0.901124 AGTCTGGGTTAGCAGAGCTG 59.099 55.000 0.00 0.00 40.10 4.24
5528 5547 0.610687 GTCTGGGTTAGCAGAGCTGT 59.389 55.000 0.00 0.00 40.10 4.40
5529 5548 1.002544 GTCTGGGTTAGCAGAGCTGTT 59.997 52.381 0.00 0.00 40.10 3.16
5530 5549 1.699634 TCTGGGTTAGCAGAGCTGTTT 59.300 47.619 0.00 0.00 40.10 2.83
5531 5550 2.106511 TCTGGGTTAGCAGAGCTGTTTT 59.893 45.455 0.00 0.00 40.10 2.43
5532 5551 2.887152 CTGGGTTAGCAGAGCTGTTTTT 59.113 45.455 0.00 0.00 40.10 1.94
5549 5568 4.629442 TTTTTGGCGGGATGGGTT 57.371 50.000 0.00 0.00 0.00 4.11
5550 5569 3.768008 TTTTTGGCGGGATGGGTTA 57.232 47.368 0.00 0.00 0.00 2.85
5551 5570 1.551452 TTTTTGGCGGGATGGGTTAG 58.449 50.000 0.00 0.00 0.00 2.34
5552 5571 0.968393 TTTTGGCGGGATGGGTTAGC 60.968 55.000 0.00 0.00 0.00 3.09
5553 5572 2.143575 TTTGGCGGGATGGGTTAGCA 62.144 55.000 0.00 0.00 0.00 3.49
5554 5573 2.203209 GGCGGGATGGGTTAGCAG 60.203 66.667 0.00 0.00 0.00 4.24
5579 5598 1.374758 GCTGTTACTCGTGCCTGCT 60.375 57.895 0.00 0.00 0.00 4.24
5613 5662 4.436998 GACCCGACCGACCTGCTG 62.437 72.222 0.00 0.00 0.00 4.41
5614 5663 4.988716 ACCCGACCGACCTGCTGA 62.989 66.667 0.00 0.00 0.00 4.26
5615 5664 4.135153 CCCGACCGACCTGCTGAG 62.135 72.222 0.00 0.00 0.00 3.35
5616 5665 3.374402 CCGACCGACCTGCTGAGT 61.374 66.667 0.00 0.00 0.00 3.41
5617 5666 2.126307 CGACCGACCTGCTGAGTG 60.126 66.667 0.00 0.00 0.00 3.51
5625 5674 1.117749 ACCTGCTGAGTGCTGACAGA 61.118 55.000 6.65 0.00 42.27 3.41
5627 5676 1.006922 TGCTGAGTGCTGACAGACG 60.007 57.895 6.65 0.00 43.37 4.18
5633 5682 4.583866 TGCTGACAGACGCACGCA 62.584 61.111 6.65 0.00 0.00 5.24
5668 5717 1.261354 CCACACACATCACAACAGACG 59.739 52.381 0.00 0.00 0.00 4.18
5719 5773 0.792640 GCAACAGACACCTGATCACG 59.207 55.000 0.00 0.00 43.02 4.35
5721 5775 1.000843 CAACAGACACCTGATCACGGA 59.999 52.381 15.51 0.00 43.02 4.69
5722 5776 1.561643 ACAGACACCTGATCACGGAT 58.438 50.000 15.51 5.66 43.02 4.18
5725 5779 0.249073 GACACCTGATCACGGATCCG 60.249 60.000 32.20 32.20 46.03 4.18
5726 5780 1.068083 CACCTGATCACGGATCCGG 59.932 63.158 35.87 24.50 45.03 5.14
5727 5781 2.029666 CCTGATCACGGATCCGGC 59.970 66.667 35.87 22.06 44.69 6.13
5728 5782 2.502492 CCTGATCACGGATCCGGCT 61.502 63.158 35.87 20.62 44.69 5.52
5731 5785 2.203070 ATCACGGATCCGGCTTGC 60.203 61.111 35.87 0.00 44.69 4.01
5732 5786 3.757248 ATCACGGATCCGGCTTGCC 62.757 63.158 35.87 0.75 44.69 4.52
5733 5787 4.473520 CACGGATCCGGCTTGCCT 62.474 66.667 35.87 12.31 44.69 4.75
5734 5788 4.473520 ACGGATCCGGCTTGCCTG 62.474 66.667 35.87 7.52 44.69 4.85
5736 5790 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
5737 5791 2.899339 GATCCGGCTTGCCTGCTC 60.899 66.667 10.12 0.76 0.00 4.26
5756 5810 2.818132 CCCCCTGCTCGATCACTC 59.182 66.667 0.00 0.00 0.00 3.51
5757 5811 2.801631 CCCCCTGCTCGATCACTCC 61.802 68.421 0.00 0.00 0.00 3.85
5758 5812 2.060383 CCCCTGCTCGATCACTCCA 61.060 63.158 0.00 0.00 0.00 3.86
5759 5813 1.142748 CCCTGCTCGATCACTCCAC 59.857 63.158 0.00 0.00 0.00 4.02
5760 5814 1.326213 CCCTGCTCGATCACTCCACT 61.326 60.000 0.00 0.00 0.00 4.00
5761 5815 0.179116 CCTGCTCGATCACTCCACTG 60.179 60.000 0.00 0.00 0.00 3.66
5762 5816 0.805322 CTGCTCGATCACTCCACTGC 60.805 60.000 0.00 0.00 0.00 4.40
5763 5817 1.216444 GCTCGATCACTCCACTGCA 59.784 57.895 0.00 0.00 0.00 4.41
5764 5818 0.179089 GCTCGATCACTCCACTGCAT 60.179 55.000 0.00 0.00 0.00 3.96
5765 5819 1.067669 GCTCGATCACTCCACTGCATA 59.932 52.381 0.00 0.00 0.00 3.14
5766 5820 2.736978 CTCGATCACTCCACTGCATAC 58.263 52.381 0.00 0.00 0.00 2.39
5767 5821 1.409064 TCGATCACTCCACTGCATACC 59.591 52.381 0.00 0.00 0.00 2.73
5768 5822 1.136891 CGATCACTCCACTGCATACCA 59.863 52.381 0.00 0.00 0.00 3.25
5769 5823 2.418609 CGATCACTCCACTGCATACCAA 60.419 50.000 0.00 0.00 0.00 3.67
5770 5824 3.742327 CGATCACTCCACTGCATACCAAT 60.742 47.826 0.00 0.00 0.00 3.16
5771 5825 3.719268 TCACTCCACTGCATACCAATT 57.281 42.857 0.00 0.00 0.00 2.32
5781 5835 4.142403 ACTGCATACCAATTTCATCAACGG 60.142 41.667 0.00 0.00 0.00 4.44
5800 5854 1.227527 TAGCGCACCATCCCATTCG 60.228 57.895 11.47 0.00 0.00 3.34
5805 5859 1.889105 CACCATCCCATTCGGCTCG 60.889 63.158 0.00 0.00 0.00 5.03
5862 5918 2.651701 CGAATAACCACGGATCTCTCG 58.348 52.381 0.00 0.00 0.00 4.04
5873 5929 3.571828 ACGGATCTCTCGTCAATCATCAT 59.428 43.478 0.00 0.00 35.87 2.45
5874 5930 4.165036 CGGATCTCTCGTCAATCATCATC 58.835 47.826 0.00 0.00 0.00 2.92
5875 5931 4.320788 CGGATCTCTCGTCAATCATCATCA 60.321 45.833 0.00 0.00 0.00 3.07
5876 5932 4.922692 GGATCTCTCGTCAATCATCATCAC 59.077 45.833 0.00 0.00 0.00 3.06
5877 5933 3.957468 TCTCTCGTCAATCATCATCACG 58.043 45.455 0.00 0.00 0.00 4.35
5878 5934 2.463876 TCTCGTCAATCATCATCACGC 58.536 47.619 0.00 0.00 0.00 5.34
5879 5935 1.188791 CTCGTCAATCATCATCACGCG 59.811 52.381 3.53 3.53 0.00 6.01
5899 5955 3.040099 CGAAACGAACAAGCCGAAAATT 58.960 40.909 0.00 0.00 0.00 1.82
5903 5959 4.555348 ACGAACAAGCCGAAAATTAACA 57.445 36.364 0.00 0.00 0.00 2.41
5905 5961 4.201930 ACGAACAAGCCGAAAATTAACACA 60.202 37.500 0.00 0.00 0.00 3.72
5906 5962 4.145756 CGAACAAGCCGAAAATTAACACAC 59.854 41.667 0.00 0.00 0.00 3.82
5907 5963 4.640789 ACAAGCCGAAAATTAACACACA 57.359 36.364 0.00 0.00 0.00 3.72
5908 5964 4.356289 ACAAGCCGAAAATTAACACACAC 58.644 39.130 0.00 0.00 0.00 3.82
5909 5965 4.097286 ACAAGCCGAAAATTAACACACACT 59.903 37.500 0.00 0.00 0.00 3.55
5910 5966 4.223320 AGCCGAAAATTAACACACACTG 57.777 40.909 0.00 0.00 0.00 3.66
5911 5967 3.004315 AGCCGAAAATTAACACACACTGG 59.996 43.478 0.00 0.00 0.00 4.00
5912 5968 3.003897 GCCGAAAATTAACACACACTGGA 59.996 43.478 0.00 0.00 0.00 3.86
5913 5969 4.533222 CCGAAAATTAACACACACTGGAC 58.467 43.478 0.00 0.00 0.00 4.02
5914 5970 4.274950 CCGAAAATTAACACACACTGGACT 59.725 41.667 0.00 0.00 0.00 3.85
5930 5986 1.386533 GACTGGAGCAACATGGGATG 58.613 55.000 0.00 0.00 0.00 3.51
5931 5987 0.033796 ACTGGAGCAACATGGGATGG 60.034 55.000 0.00 0.00 33.60 3.51
5933 5989 0.928505 TGGAGCAACATGGGATGGAT 59.071 50.000 0.00 0.00 33.60 3.41
5934 5990 1.325355 GGAGCAACATGGGATGGATG 58.675 55.000 0.00 0.00 33.60 3.51
5935 5991 1.325355 GAGCAACATGGGATGGATGG 58.675 55.000 0.00 0.00 33.60 3.51
5936 5992 0.928505 AGCAACATGGGATGGATGGA 59.071 50.000 0.00 0.00 33.60 3.41
5937 5993 1.502039 AGCAACATGGGATGGATGGAT 59.498 47.619 0.00 0.00 33.60 3.41
5938 5994 1.616865 GCAACATGGGATGGATGGATG 59.383 52.381 0.00 0.00 33.60 3.51
5939 5995 2.244695 CAACATGGGATGGATGGATGG 58.755 52.381 0.00 0.00 33.60 3.51
5940 5996 1.837252 ACATGGGATGGATGGATGGA 58.163 50.000 0.00 0.00 33.60 3.41
5941 5997 2.365183 ACATGGGATGGATGGATGGAT 58.635 47.619 0.00 0.00 33.60 3.41
5942 5998 2.725783 ACATGGGATGGATGGATGGATT 59.274 45.455 0.00 0.00 33.60 3.01
5943 5999 3.924721 ACATGGGATGGATGGATGGATTA 59.075 43.478 0.00 0.00 33.60 1.75
5944 6000 4.017775 ACATGGGATGGATGGATGGATTAG 60.018 45.833 0.00 0.00 33.60 1.73
5945 6001 2.309755 TGGGATGGATGGATGGATTAGC 59.690 50.000 0.00 0.00 0.00 3.09
5946 6002 2.579860 GGGATGGATGGATGGATTAGCT 59.420 50.000 0.00 0.00 0.00 3.32
5947 6003 3.371380 GGGATGGATGGATGGATTAGCTC 60.371 52.174 0.00 0.00 0.00 4.09
5948 6004 3.529533 GATGGATGGATGGATTAGCTCG 58.470 50.000 0.00 0.00 0.00 5.03
5949 6005 1.625315 TGGATGGATGGATTAGCTCGG 59.375 52.381 0.00 0.00 0.00 4.63
5952 6008 1.048601 TGGATGGATTAGCTCGGTCC 58.951 55.000 0.00 0.00 0.00 4.46
5999 6059 1.153823 CGGGAAGTACAGGCTGTCG 60.154 63.158 25.80 16.37 0.00 4.35
6002 6062 0.108756 GGAAGTACAGGCTGTCGTCC 60.109 60.000 25.80 24.67 0.00 4.79
6003 6063 0.889306 GAAGTACAGGCTGTCGTCCT 59.111 55.000 25.80 12.85 0.00 3.85
6004 6064 0.889306 AAGTACAGGCTGTCGTCCTC 59.111 55.000 25.80 8.81 0.00 3.71
6005 6065 0.966370 AGTACAGGCTGTCGTCCTCC 60.966 60.000 25.80 4.58 0.00 4.30
6006 6066 1.681327 TACAGGCTGTCGTCCTCCC 60.681 63.158 25.80 0.00 0.00 4.30
6007 6067 3.775654 CAGGCTGTCGTCCTCCCC 61.776 72.222 6.28 0.00 0.00 4.81
6048 6108 2.161486 GCACGCGCTAGAGTCCAAG 61.161 63.158 5.73 0.00 34.30 3.61
6051 6111 2.583593 GCGCTAGAGTCCAAGCCG 60.584 66.667 0.00 6.19 35.22 5.52
6070 6130 3.816054 AACCAGGGTAGGGTTCCG 58.184 61.111 0.00 0.00 45.26 4.30
6152 6212 1.949465 AATCGTAATCGCCCTCCAAC 58.051 50.000 0.00 0.00 36.96 3.77
6156 6216 0.746923 GTAATCGCCCTCCAACCCAC 60.747 60.000 0.00 0.00 0.00 4.61
6301 6386 4.814294 GATCAGACGGGCCGCGTT 62.814 66.667 28.71 6.52 0.00 4.84
6321 6406 4.194720 GTCGACGCCTCATCGCCT 62.195 66.667 0.00 0.00 39.46 5.52
6328 6413 4.457496 CCTCATCGCCTGCACCGT 62.457 66.667 2.40 0.00 0.00 4.83
6329 6414 2.887568 CTCATCGCCTGCACCGTC 60.888 66.667 2.40 0.00 0.00 4.79
6337 6422 4.056125 CTGCACCGTCTGAGGCGA 62.056 66.667 8.55 0.00 33.69 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 0.729140 CAAGGTGTTCGGCGATTTGC 60.729 55.000 11.76 2.23 45.38 3.68
13 14 0.729140 GCAAGGTGTTCGGCGATTTG 60.729 55.000 11.76 11.62 0.00 2.32
14 15 1.579429 GCAAGGTGTTCGGCGATTT 59.421 52.632 11.76 0.00 0.00 2.17
15 16 3.263941 GCAAGGTGTTCGGCGATT 58.736 55.556 11.76 0.00 0.00 3.34
48 49 4.971125 GAGGATACCGGCGGCTGC 62.971 72.222 28.71 19.15 37.71 5.25
49 50 4.647615 CGAGGATACCGGCGGCTG 62.648 72.222 28.71 2.28 37.17 4.85
55 56 0.243907 CACATAGGCGAGGATACCGG 59.756 60.000 0.00 0.00 37.17 5.28
56 57 0.243907 CCACATAGGCGAGGATACCG 59.756 60.000 0.00 0.00 37.17 4.02
57 58 1.272769 GACCACATAGGCGAGGATACC 59.727 57.143 0.00 0.00 43.14 2.73
58 59 1.068472 CGACCACATAGGCGAGGATAC 60.068 57.143 0.00 0.00 43.14 2.24
59 60 1.244816 CGACCACATAGGCGAGGATA 58.755 55.000 0.00 0.00 43.14 2.59
60 61 1.464376 CCGACCACATAGGCGAGGAT 61.464 60.000 0.00 0.00 43.14 3.24
61 62 2.125326 CCGACCACATAGGCGAGGA 61.125 63.158 0.00 0.00 43.14 3.71
62 63 2.076622 CTCCGACCACATAGGCGAGG 62.077 65.000 0.00 0.00 43.14 4.63
63 64 1.360551 CTCCGACCACATAGGCGAG 59.639 63.158 0.00 0.00 43.14 5.03
64 65 2.782222 GCTCCGACCACATAGGCGA 61.782 63.158 0.00 0.00 43.14 5.54
65 66 2.279517 GCTCCGACCACATAGGCG 60.280 66.667 0.00 0.00 43.14 5.52
66 67 2.109181 GGCTCCGACCACATAGGC 59.891 66.667 0.00 0.00 43.14 3.93
67 68 1.762460 AGGGCTCCGACCACATAGG 60.762 63.158 0.00 0.00 45.67 2.57
68 69 1.443407 CAGGGCTCCGACCACATAG 59.557 63.158 0.00 0.00 29.21 2.23
69 70 2.063979 CCAGGGCTCCGACCACATA 61.064 63.158 0.00 0.00 29.21 2.29
70 71 3.402681 CCAGGGCTCCGACCACAT 61.403 66.667 0.00 0.00 29.21 3.21
71 72 4.631740 TCCAGGGCTCCGACCACA 62.632 66.667 0.00 0.00 29.21 4.17
72 73 2.804828 CTTTCCAGGGCTCCGACCAC 62.805 65.000 0.00 0.00 29.21 4.16
73 74 2.528127 TTTCCAGGGCTCCGACCA 60.528 61.111 0.00 0.00 29.21 4.02
74 75 2.269241 CTTTCCAGGGCTCCGACC 59.731 66.667 0.00 0.00 0.00 4.79
75 76 2.436824 GCTTTCCAGGGCTCCGAC 60.437 66.667 0.00 0.00 0.00 4.79
76 77 2.607750 AGCTTTCCAGGGCTCCGA 60.608 61.111 0.00 0.00 32.98 4.55
77 78 2.124942 GAGCTTTCCAGGGCTCCG 60.125 66.667 5.12 0.00 46.32 4.63
80 81 4.416738 GGCGAGCTTTCCAGGGCT 62.417 66.667 0.00 0.00 41.88 5.19
82 83 3.984193 CTGGGCGAGCTTTCCAGGG 62.984 68.421 17.88 1.21 43.09 4.45
83 84 2.437359 CTGGGCGAGCTTTCCAGG 60.437 66.667 17.88 3.72 43.09 4.45
84 85 2.437359 CCTGGGCGAGCTTTCCAG 60.437 66.667 18.41 18.41 45.57 3.86
85 86 2.927856 TCCTGGGCGAGCTTTCCA 60.928 61.111 7.39 5.68 0.00 3.53
86 87 2.124942 CTCCTGGGCGAGCTTTCC 60.125 66.667 0.00 0.00 0.00 3.13
95 96 3.157252 TCCATCTCGCTCCTGGGC 61.157 66.667 0.00 0.00 0.00 5.36
96 97 2.506061 CCTCCATCTCGCTCCTGGG 61.506 68.421 0.00 0.00 0.00 4.45
97 98 3.136750 CCTCCATCTCGCTCCTGG 58.863 66.667 0.00 0.00 0.00 4.45
98 99 2.132996 AGCCTCCATCTCGCTCCTG 61.133 63.158 0.00 0.00 0.00 3.86
99 100 2.132996 CAGCCTCCATCTCGCTCCT 61.133 63.158 0.00 0.00 0.00 3.69
100 101 2.362329 GACAGCCTCCATCTCGCTCC 62.362 65.000 0.00 0.00 0.00 4.70
101 102 1.067250 GACAGCCTCCATCTCGCTC 59.933 63.158 0.00 0.00 0.00 5.03
102 103 1.683707 TGACAGCCTCCATCTCGCT 60.684 57.895 0.00 0.00 0.00 4.93
103 104 1.520342 GTGACAGCCTCCATCTCGC 60.520 63.158 0.00 0.00 0.00 5.03
104 105 1.226802 CGTGACAGCCTCCATCTCG 60.227 63.158 0.00 0.00 0.00 4.04
105 106 1.142748 CCGTGACAGCCTCCATCTC 59.857 63.158 0.00 0.00 0.00 2.75
106 107 1.610673 ACCGTGACAGCCTCCATCT 60.611 57.895 0.00 0.00 0.00 2.90
107 108 1.448540 CACCGTGACAGCCTCCATC 60.449 63.158 0.00 0.00 0.00 3.51
108 109 1.480212 TTCACCGTGACAGCCTCCAT 61.480 55.000 0.00 0.00 0.00 3.41
109 110 1.691195 TTTCACCGTGACAGCCTCCA 61.691 55.000 0.00 0.00 0.00 3.86
110 111 0.534203 TTTTCACCGTGACAGCCTCC 60.534 55.000 0.00 0.00 0.00 4.30
111 112 0.586802 GTTTTCACCGTGACAGCCTC 59.413 55.000 0.00 0.00 0.00 4.70
112 113 0.818040 GGTTTTCACCGTGACAGCCT 60.818 55.000 12.06 0.00 31.60 4.58
113 114 1.652563 GGTTTTCACCGTGACAGCC 59.347 57.895 0.00 2.53 31.60 4.85
122 123 2.806818 GTCGGAAAGAGAGGTTTTCACC 59.193 50.000 0.86 0.00 44.67 4.02
123 124 2.475487 CGTCGGAAAGAGAGGTTTTCAC 59.525 50.000 0.86 0.00 36.50 3.18
124 125 2.547218 CCGTCGGAAAGAGAGGTTTTCA 60.547 50.000 4.91 0.00 36.50 2.69
125 126 2.067013 CCGTCGGAAAGAGAGGTTTTC 58.933 52.381 4.91 0.00 34.55 2.29
126 127 1.270678 CCCGTCGGAAAGAGAGGTTTT 60.271 52.381 14.39 0.00 0.00 2.43
127 128 0.320697 CCCGTCGGAAAGAGAGGTTT 59.679 55.000 14.39 0.00 0.00 3.27
128 129 1.542187 CCCCGTCGGAAAGAGAGGTT 61.542 60.000 14.39 0.00 0.00 3.50
129 130 1.982938 CCCCGTCGGAAAGAGAGGT 60.983 63.158 14.39 0.00 0.00 3.85
130 131 1.681327 TCCCCGTCGGAAAGAGAGG 60.681 63.158 14.39 3.22 37.88 3.69
131 132 4.013702 TCCCCGTCGGAAAGAGAG 57.986 61.111 14.39 0.00 37.88 3.20
138 139 0.616371 AATGTCATTTCCCCGTCGGA 59.384 50.000 14.39 0.00 39.68 4.55
139 140 1.400494 GAAATGTCATTTCCCCGTCGG 59.600 52.381 22.67 3.60 42.10 4.79
140 141 2.825086 GAAATGTCATTTCCCCGTCG 57.175 50.000 22.67 0.00 42.10 5.12
147 148 2.286418 CCGCCGCTAGAAATGTCATTTC 60.286 50.000 24.84 24.84 46.90 2.17
148 149 1.670811 CCGCCGCTAGAAATGTCATTT 59.329 47.619 10.63 10.63 34.64 2.32
149 150 1.134521 TCCGCCGCTAGAAATGTCATT 60.135 47.619 0.00 0.00 0.00 2.57
150 151 0.464036 TCCGCCGCTAGAAATGTCAT 59.536 50.000 0.00 0.00 0.00 3.06
151 152 0.179111 CTCCGCCGCTAGAAATGTCA 60.179 55.000 0.00 0.00 0.00 3.58
152 153 1.491505 GCTCCGCCGCTAGAAATGTC 61.492 60.000 0.00 0.00 0.00 3.06
153 154 1.521681 GCTCCGCCGCTAGAAATGT 60.522 57.895 0.00 0.00 0.00 2.71
154 155 1.493950 CTGCTCCGCCGCTAGAAATG 61.494 60.000 0.00 0.00 0.00 2.32
155 156 1.227380 CTGCTCCGCCGCTAGAAAT 60.227 57.895 0.00 0.00 0.00 2.17
156 157 2.184322 CTGCTCCGCCGCTAGAAA 59.816 61.111 0.00 0.00 0.00 2.52
157 158 4.514577 GCTGCTCCGCCGCTAGAA 62.515 66.667 0.00 0.00 35.94 2.10
168 169 4.687215 TGCCCACAGTCGCTGCTC 62.687 66.667 6.74 0.00 34.37 4.26
169 170 4.694233 CTGCCCACAGTCGCTGCT 62.694 66.667 6.74 0.00 39.22 4.24
171 172 4.320456 ACCTGCCCACAGTCGCTG 62.320 66.667 5.47 5.47 42.81 5.18
172 173 4.320456 CACCTGCCCACAGTCGCT 62.320 66.667 0.00 0.00 42.81 4.93
174 175 4.704833 CCCACCTGCCCACAGTCG 62.705 72.222 0.00 0.00 42.81 4.18
175 176 4.351054 CCCCACCTGCCCACAGTC 62.351 72.222 0.00 0.00 42.81 3.51
193 194 4.221422 ATGTCGATCCCGGCGTGG 62.221 66.667 6.01 7.15 44.62 4.94
195 196 3.144871 TCATGTCGATCCCGGCGT 61.145 61.111 6.01 0.00 44.62 5.68
196 197 2.658593 GTCATGTCGATCCCGGCG 60.659 66.667 0.00 0.00 44.62 6.46
197 198 2.658593 CGTCATGTCGATCCCGGC 60.659 66.667 6.49 0.00 41.51 6.13
198 199 2.027605 CCGTCATGTCGATCCCGG 59.972 66.667 14.01 0.00 36.24 5.73
199 200 2.658593 GCCGTCATGTCGATCCCG 60.659 66.667 14.01 0.00 37.07 5.14
200 201 2.622903 TTCGCCGTCATGTCGATCCC 62.623 60.000 14.01 0.00 31.96 3.85
201 202 0.804544 TTTCGCCGTCATGTCGATCC 60.805 55.000 14.01 1.43 31.96 3.36
202 203 0.572590 CTTTCGCCGTCATGTCGATC 59.427 55.000 14.01 4.50 31.96 3.69
203 204 0.806102 CCTTTCGCCGTCATGTCGAT 60.806 55.000 14.01 0.00 31.96 3.59
204 205 1.445410 CCTTTCGCCGTCATGTCGA 60.445 57.895 14.01 6.05 0.00 4.20
205 206 2.452813 CCCTTTCGCCGTCATGTCG 61.453 63.158 5.32 5.32 0.00 4.35
206 207 0.672401 TTCCCTTTCGCCGTCATGTC 60.672 55.000 0.00 0.00 0.00 3.06
207 208 0.250553 TTTCCCTTTCGCCGTCATGT 60.251 50.000 0.00 0.00 0.00 3.21
208 209 0.447801 CTTTCCCTTTCGCCGTCATG 59.552 55.000 0.00 0.00 0.00 3.07
209 210 0.036306 ACTTTCCCTTTCGCCGTCAT 59.964 50.000 0.00 0.00 0.00 3.06
210 211 0.882927 CACTTTCCCTTTCGCCGTCA 60.883 55.000 0.00 0.00 0.00 4.35
211 212 1.574702 CCACTTTCCCTTTCGCCGTC 61.575 60.000 0.00 0.00 0.00 4.79
212 213 1.599797 CCACTTTCCCTTTCGCCGT 60.600 57.895 0.00 0.00 0.00 5.68
213 214 2.978018 GCCACTTTCCCTTTCGCCG 61.978 63.158 0.00 0.00 0.00 6.46
214 215 2.962569 GCCACTTTCCCTTTCGCC 59.037 61.111 0.00 0.00 0.00 5.54
215 216 2.183858 GACGCCACTTTCCCTTTCGC 62.184 60.000 0.00 0.00 0.00 4.70
216 217 0.882927 TGACGCCACTTTCCCTTTCG 60.883 55.000 0.00 0.00 0.00 3.46
217 218 1.200020 CATGACGCCACTTTCCCTTTC 59.800 52.381 0.00 0.00 0.00 2.62
218 219 1.247567 CATGACGCCACTTTCCCTTT 58.752 50.000 0.00 0.00 0.00 3.11
219 220 0.110486 ACATGACGCCACTTTCCCTT 59.890 50.000 0.00 0.00 0.00 3.95
220 221 0.606401 CACATGACGCCACTTTCCCT 60.606 55.000 0.00 0.00 0.00 4.20
221 222 1.586154 CCACATGACGCCACTTTCCC 61.586 60.000 0.00 0.00 0.00 3.97
222 223 1.875963 CCACATGACGCCACTTTCC 59.124 57.895 0.00 0.00 0.00 3.13
223 224 1.210155 GCCACATGACGCCACTTTC 59.790 57.895 0.00 0.00 0.00 2.62
224 225 2.616330 CGCCACATGACGCCACTTT 61.616 57.895 0.00 0.00 0.00 2.66
225 226 3.049674 CGCCACATGACGCCACTT 61.050 61.111 0.00 0.00 0.00 3.16
245 246 4.891727 CCGCCCAGATTCGACCCG 62.892 72.222 0.00 0.00 0.00 5.28
246 247 3.782443 ACCGCCCAGATTCGACCC 61.782 66.667 0.00 0.00 0.00 4.46
247 248 2.511600 CACCGCCCAGATTCGACC 60.512 66.667 0.00 0.00 0.00 4.79
248 249 0.672401 TTTCACCGCCCAGATTCGAC 60.672 55.000 0.00 0.00 0.00 4.20
249 250 0.391130 CTTTCACCGCCCAGATTCGA 60.391 55.000 0.00 0.00 0.00 3.71
250 251 1.369091 CCTTTCACCGCCCAGATTCG 61.369 60.000 0.00 0.00 0.00 3.34
251 252 1.657751 GCCTTTCACCGCCCAGATTC 61.658 60.000 0.00 0.00 0.00 2.52
252 253 1.678970 GCCTTTCACCGCCCAGATT 60.679 57.895 0.00 0.00 0.00 2.40
253 254 2.044946 GCCTTTCACCGCCCAGAT 60.045 61.111 0.00 0.00 0.00 2.90
254 255 4.697756 CGCCTTTCACCGCCCAGA 62.698 66.667 0.00 0.00 0.00 3.86
256 257 4.572571 AACGCCTTTCACCGCCCA 62.573 61.111 0.00 0.00 0.00 5.36
257 258 3.263503 GAAACGCCTTTCACCGCCC 62.264 63.158 3.63 0.00 36.52 6.13
258 259 2.183858 GAGAAACGCCTTTCACCGCC 62.184 60.000 10.25 0.00 38.67 6.13
259 260 1.206831 GAGAAACGCCTTTCACCGC 59.793 57.895 10.25 0.00 38.67 5.68
260 261 1.491563 CGAGAAACGCCTTTCACCG 59.508 57.895 10.25 8.95 38.67 4.94
270 271 1.428448 TCATTGTCAGGCGAGAAACG 58.572 50.000 0.00 0.00 45.66 3.60
271 272 2.096496 CCATCATTGTCAGGCGAGAAAC 59.904 50.000 0.00 0.00 0.00 2.78
272 273 2.358957 CCATCATTGTCAGGCGAGAAA 58.641 47.619 0.00 0.00 0.00 2.52
273 274 2.013563 GCCATCATTGTCAGGCGAGAA 61.014 52.381 0.00 0.00 37.41 2.87
274 275 0.462581 GCCATCATTGTCAGGCGAGA 60.463 55.000 0.00 0.00 37.41 4.04
275 276 2.020131 GCCATCATTGTCAGGCGAG 58.980 57.895 0.00 0.00 37.41 5.03
276 277 4.223800 GCCATCATTGTCAGGCGA 57.776 55.556 0.00 0.00 37.41 5.54
278 279 0.971959 TTGGGCCATCATTGTCAGGC 60.972 55.000 7.26 0.00 46.28 4.85
279 280 1.108776 CTTGGGCCATCATTGTCAGG 58.891 55.000 7.26 0.00 0.00 3.86
280 281 0.458669 GCTTGGGCCATCATTGTCAG 59.541 55.000 7.26 0.00 0.00 3.51
281 282 1.314534 CGCTTGGGCCATCATTGTCA 61.315 55.000 7.26 0.00 34.44 3.58
282 283 1.434696 CGCTTGGGCCATCATTGTC 59.565 57.895 7.26 0.00 34.44 3.18
283 284 2.713967 GCGCTTGGGCCATCATTGT 61.714 57.895 7.26 0.00 34.44 2.71
284 285 2.105528 GCGCTTGGGCCATCATTG 59.894 61.111 7.26 0.00 34.44 2.82
292 293 1.741401 GGAAAAATGGCGCTTGGGC 60.741 57.895 7.64 0.81 42.69 5.36
293 294 0.321346 AAGGAAAAATGGCGCTTGGG 59.679 50.000 7.64 0.00 0.00 4.12
294 295 1.672737 GGAAGGAAAAATGGCGCTTGG 60.673 52.381 7.64 0.00 0.00 3.61
295 296 1.713597 GGAAGGAAAAATGGCGCTTG 58.286 50.000 7.64 0.00 0.00 4.01
296 297 0.243636 CGGAAGGAAAAATGGCGCTT 59.756 50.000 7.64 0.00 0.00 4.68
297 298 1.883021 CGGAAGGAAAAATGGCGCT 59.117 52.632 7.64 0.00 0.00 5.92
298 299 1.805539 GCGGAAGGAAAAATGGCGC 60.806 57.895 0.00 0.00 0.00 6.53
299 300 0.456653 CAGCGGAAGGAAAAATGGCG 60.457 55.000 0.00 0.00 0.00 5.69
300 301 0.108662 CCAGCGGAAGGAAAAATGGC 60.109 55.000 0.00 0.00 0.00 4.40
301 302 1.474077 CTCCAGCGGAAGGAAAAATGG 59.526 52.381 0.00 0.00 34.08 3.16
302 303 1.135286 GCTCCAGCGGAAGGAAAAATG 60.135 52.381 0.00 0.00 34.08 2.32
303 304 1.177401 GCTCCAGCGGAAGGAAAAAT 58.823 50.000 0.00 0.00 34.08 1.82
304 305 0.893727 GGCTCCAGCGGAAGGAAAAA 60.894 55.000 0.00 0.00 43.26 1.94
305 306 1.303317 GGCTCCAGCGGAAGGAAAA 60.303 57.895 0.00 0.00 43.26 2.29
306 307 2.351276 GGCTCCAGCGGAAGGAAA 59.649 61.111 0.00 0.00 43.26 3.13
307 308 3.717294 GGGCTCCAGCGGAAGGAA 61.717 66.667 0.00 0.00 43.26 3.36
317 318 4.397010 GGGCATTTGGGGGCTCCA 62.397 66.667 0.00 0.00 45.43 3.86
352 353 3.140814 GCAATCCCAGGGCGAACC 61.141 66.667 0.00 0.00 40.67 3.62
353 354 2.044946 AGCAATCCCAGGGCGAAC 60.045 61.111 0.00 0.00 0.00 3.95
354 355 2.045045 CAGCAATCCCAGGGCGAA 60.045 61.111 0.00 0.00 0.00 4.70
355 356 4.113815 CCAGCAATCCCAGGGCGA 62.114 66.667 0.00 0.00 0.00 5.54
358 359 4.847367 GGCCCAGCAATCCCAGGG 62.847 72.222 0.00 0.00 44.37 4.45
359 360 3.605412 TTGGCCCAGCAATCCCAGG 62.605 63.158 0.00 0.00 0.00 4.45
360 361 1.193462 TTTTGGCCCAGCAATCCCAG 61.193 55.000 0.00 0.00 0.00 4.45
361 362 0.765903 TTTTTGGCCCAGCAATCCCA 60.766 50.000 0.00 0.00 0.00 4.37
362 363 2.065483 TTTTTGGCCCAGCAATCCC 58.935 52.632 0.00 0.00 0.00 3.85
377 378 1.858372 CGTCGGTTCGGCCCATTTTT 61.858 55.000 0.00 0.00 0.00 1.94
378 379 2.329614 CGTCGGTTCGGCCCATTTT 61.330 57.895 0.00 0.00 0.00 1.82
379 380 2.744709 CGTCGGTTCGGCCCATTT 60.745 61.111 0.00 0.00 0.00 2.32
380 381 4.770874 CCGTCGGTTCGGCCCATT 62.771 66.667 2.08 0.00 43.96 3.16
392 393 2.693285 GAACGCCGAATTCCGTCG 59.307 61.111 9.69 8.26 45.84 5.12
715 716 2.167487 GCACAAGGGGTCAACTCAAAAA 59.833 45.455 0.00 0.00 0.00 1.94
716 717 1.754226 GCACAAGGGGTCAACTCAAAA 59.246 47.619 0.00 0.00 0.00 2.44
717 718 1.064017 AGCACAAGGGGTCAACTCAAA 60.064 47.619 0.00 0.00 0.00 2.69
718 719 0.550914 AGCACAAGGGGTCAACTCAA 59.449 50.000 0.00 0.00 0.00 3.02
719 720 0.108585 GAGCACAAGGGGTCAACTCA 59.891 55.000 0.00 0.00 35.43 3.41
720 721 0.951040 CGAGCACAAGGGGTCAACTC 60.951 60.000 2.21 0.00 35.06 3.01
721 722 1.071471 CGAGCACAAGGGGTCAACT 59.929 57.895 2.21 0.00 35.06 3.16
722 723 2.617274 GCGAGCACAAGGGGTCAAC 61.617 63.158 2.21 0.00 35.06 3.18
723 724 2.281484 GCGAGCACAAGGGGTCAA 60.281 61.111 2.21 0.00 35.06 3.18
724 725 1.476845 TAAGCGAGCACAAGGGGTCA 61.477 55.000 2.21 0.00 35.06 4.02
725 726 0.321298 TTAAGCGAGCACAAGGGGTC 60.321 55.000 0.00 0.00 0.00 4.46
726 727 0.321653 CTTAAGCGAGCACAAGGGGT 60.322 55.000 0.00 0.00 0.00 4.95
727 728 1.026718 CCTTAAGCGAGCACAAGGGG 61.027 60.000 15.64 0.51 35.01 4.79
728 729 2.471255 CCTTAAGCGAGCACAAGGG 58.529 57.895 15.64 0.60 35.01 3.95
729 730 1.026718 CCCCTTAAGCGAGCACAAGG 61.027 60.000 16.19 16.19 37.81 3.61
730 731 1.026718 CCCCCTTAAGCGAGCACAAG 61.027 60.000 0.00 0.10 0.00 3.16
731 732 1.002624 CCCCCTTAAGCGAGCACAA 60.003 57.895 0.00 0.00 0.00 3.33
732 733 0.905809 TACCCCCTTAAGCGAGCACA 60.906 55.000 0.00 0.00 0.00 4.57
733 734 0.251073 TTACCCCCTTAAGCGAGCAC 59.749 55.000 0.00 0.00 0.00 4.40
734 735 0.985760 TTTACCCCCTTAAGCGAGCA 59.014 50.000 0.00 0.00 0.00 4.26
735 736 2.343484 ATTTACCCCCTTAAGCGAGC 57.657 50.000 0.00 0.00 0.00 5.03
736 737 3.071167 AGCTATTTACCCCCTTAAGCGAG 59.929 47.826 0.00 0.00 33.80 5.03
737 738 3.043418 AGCTATTTACCCCCTTAAGCGA 58.957 45.455 0.00 0.00 33.80 4.93
738 739 3.071167 AGAGCTATTTACCCCCTTAAGCG 59.929 47.826 0.00 0.00 33.80 4.68
739 740 4.643463 GAGAGCTATTTACCCCCTTAAGC 58.357 47.826 0.00 0.00 0.00 3.09
740 741 4.884247 CGAGAGCTATTTACCCCCTTAAG 58.116 47.826 0.00 0.00 0.00 1.85
741 742 4.950205 CGAGAGCTATTTACCCCCTTAA 57.050 45.455 0.00 0.00 0.00 1.85
757 758 3.532155 CTTCCTCCCCCGCGAGAG 61.532 72.222 8.23 10.84 30.97 3.20
764 765 3.339093 CACACCCCTTCCTCCCCC 61.339 72.222 0.00 0.00 0.00 5.40
765 766 4.048470 GCACACCCCTTCCTCCCC 62.048 72.222 0.00 0.00 0.00 4.81
766 767 4.410400 CGCACACCCCTTCCTCCC 62.410 72.222 0.00 0.00 0.00 4.30
767 768 3.637273 ACGCACACCCCTTCCTCC 61.637 66.667 0.00 0.00 0.00 4.30
768 769 2.358737 CACGCACACCCCTTCCTC 60.359 66.667 0.00 0.00 0.00 3.71
769 770 4.643387 GCACGCACACCCCTTCCT 62.643 66.667 0.00 0.00 0.00 3.36
783 784 2.746277 ATTCTTCCCCGCACGCAC 60.746 61.111 0.00 0.00 0.00 5.34
784 785 2.435938 GATTCTTCCCCGCACGCA 60.436 61.111 0.00 0.00 0.00 5.24
785 786 3.564027 CGATTCTTCCCCGCACGC 61.564 66.667 0.00 0.00 0.00 5.34
790 791 2.112815 GGTTGGCGATTCTTCCCCG 61.113 63.158 0.00 0.00 0.00 5.73
791 792 0.544697 TAGGTTGGCGATTCTTCCCC 59.455 55.000 0.00 0.00 0.00 4.81
792 793 2.618709 CAATAGGTTGGCGATTCTTCCC 59.381 50.000 0.00 0.00 0.00 3.97
793 794 3.279434 ACAATAGGTTGGCGATTCTTCC 58.721 45.455 0.00 0.00 39.70 3.46
794 795 4.965119 AACAATAGGTTGGCGATTCTTC 57.035 40.909 0.00 0.00 38.60 2.87
795 796 5.722021 AAAACAATAGGTTGGCGATTCTT 57.278 34.783 0.00 0.00 40.35 2.52
796 797 5.722021 AAAAACAATAGGTTGGCGATTCT 57.278 34.783 0.00 0.00 40.35 2.40
819 820 5.908341 AGGTTGGCGATTTTTGTCTAAAAA 58.092 33.333 0.00 0.00 46.42 1.94
820 821 5.523438 AGGTTGGCGATTTTTGTCTAAAA 57.477 34.783 0.00 0.00 39.88 1.52
821 822 6.827586 ATAGGTTGGCGATTTTTGTCTAAA 57.172 33.333 0.00 0.00 0.00 1.85
822 823 6.616947 CAATAGGTTGGCGATTTTTGTCTAA 58.383 36.000 0.00 0.00 0.00 2.10
823 824 6.189677 CAATAGGTTGGCGATTTTTGTCTA 57.810 37.500 0.00 0.00 0.00 2.59
824 825 5.059404 CAATAGGTTGGCGATTTTTGTCT 57.941 39.130 0.00 0.00 0.00 3.41
860 861 4.312052 GCCAAATCGTAGTGGGCA 57.688 55.556 0.00 0.00 44.01 5.36
892 893 2.034124 CAATGGGCTGGACCAAATAGG 58.966 52.381 0.00 0.00 45.13 2.57
900 901 2.749621 CTGTAACTTCAATGGGCTGGAC 59.250 50.000 0.00 0.00 0.00 4.02
1217 1221 9.094578 CAATCTACCCAAGGAGAATCTAATCTA 57.905 37.037 0.00 0.00 33.73 1.98
1221 1225 7.132805 TCTCAATCTACCCAAGGAGAATCTAA 58.867 38.462 0.00 0.00 33.73 2.10
1328 1332 2.933906 CGAATTTTGCTTCGGGCTACTA 59.066 45.455 0.00 0.00 43.24 1.82
1424 1428 3.452990 TGTTTCCTGTGGCTTCCGATATA 59.547 43.478 0.00 0.00 0.00 0.86
1440 1444 2.092323 GATTGGGGTGCTACTGTTTCC 58.908 52.381 0.00 0.00 0.00 3.13
1545 1552 8.250143 TGACATTCTGCTCCTAATTACTATGA 57.750 34.615 0.00 0.00 0.00 2.15
1553 1560 3.920231 TGCTGACATTCTGCTCCTAAT 57.080 42.857 6.60 0.00 41.21 1.73
1609 1616 1.193462 CCCCATTCAAGGCAAAGGCA 61.193 55.000 0.00 0.00 43.71 4.75
1858 1867 5.348451 GTCACAACAAAGAGTGCACAATTTT 59.652 36.000 21.04 12.90 35.76 1.82
1863 1872 1.742831 GGTCACAACAAAGAGTGCACA 59.257 47.619 21.04 0.00 35.76 4.57
1917 1926 2.761208 ACCTTCCAGGAGTACGAGAATG 59.239 50.000 0.00 0.00 37.67 2.67
1968 1977 2.366533 CTCACATCTGCTGCTTGGATT 58.633 47.619 0.00 0.00 0.00 3.01
2120 2129 5.784177 CCGTCACTAGGCTATTCAATATGT 58.216 41.667 0.00 0.00 0.00 2.29
2155 2164 4.152938 GGTTTCCAAAATTTCTGCATGAGC 59.847 41.667 0.00 0.00 42.57 4.26
2239 2248 4.346418 GGTCAGATAACTCAGTGGATGGAT 59.654 45.833 0.00 0.00 0.00 3.41
2355 2364 2.426522 TCAGTGGCAAGACAGTAATGC 58.573 47.619 0.00 2.06 39.33 3.56
2424 2433 7.228706 GTCAAAGAGGAGAATTACCAAACAGAA 59.771 37.037 4.35 0.00 0.00 3.02
2603 2614 5.432246 TCCTAGTACTACTCGGATGGGACA 61.432 50.000 5.53 0.00 35.44 4.02
2889 2900 1.078497 CCCAGCATAACGGAGCACA 60.078 57.895 0.00 0.00 0.00 4.57
2975 2986 2.568956 TCACTTTGATGTGAGGAGAGGG 59.431 50.000 0.00 0.00 41.43 4.30
3226 3237 2.496070 TCCTGCAAGCTCATTACGTACT 59.504 45.455 0.00 0.00 0.00 2.73
3238 3251 1.202268 GCACATCATTCTCCTGCAAGC 60.202 52.381 0.00 0.00 0.00 4.01
3318 3331 0.469705 TGTCATGGGGCTGCTTTTGT 60.470 50.000 0.00 0.00 0.00 2.83
3604 3617 7.861629 ACAACACATCAATAGGATTCCTCTTA 58.138 34.615 8.94 0.00 34.61 2.10
3700 3713 5.689068 GCATGAACTTCCTTCAAAACAGAAG 59.311 40.000 0.00 0.00 42.37 2.85
3703 3716 4.980434 CAGCATGAACTTCCTTCAAAACAG 59.020 41.667 0.00 0.00 42.37 3.16
4456 4469 5.350504 TTTGCTCAAAGGTTGGAATCAAA 57.649 34.783 0.00 0.00 34.28 2.69
4539 4552 6.265196 ACAGATGTAAGGAATTTCAGCAAACA 59.735 34.615 0.00 0.00 0.00 2.83
4554 4567 7.261325 ACTCTACAATGTAGCACAGATGTAAG 58.739 38.462 15.17 6.28 35.41 2.34
4561 4574 7.426929 AAGAAAACTCTACAATGTAGCACAG 57.573 36.000 15.17 10.20 0.00 3.66
4565 4578 6.707599 ACGAAGAAAACTCTACAATGTAGC 57.292 37.500 15.17 0.90 0.00 3.58
4586 4599 8.029522 TCTGCTTCAAGGCTATAATCTATAACG 58.970 37.037 0.00 0.00 0.00 3.18
4589 4602 9.259832 TGATCTGCTTCAAGGCTATAATCTATA 57.740 33.333 0.00 0.00 0.00 1.31
4604 4617 4.039730 GGAAGGTAGCTATGATCTGCTTCA 59.960 45.833 12.17 0.00 40.35 3.02
4757 4771 0.999406 CTATGAACGTGCGGAGTTGG 59.001 55.000 0.00 0.00 31.14 3.77
4762 4776 0.747852 TATGGCTATGAACGTGCGGA 59.252 50.000 0.00 0.00 0.00 5.54
4794 4808 1.506493 GAGGTAATCGCAGCTCATGG 58.494 55.000 0.00 0.00 41.63 3.66
4915 4930 2.684001 TGAAGAACTCAACACACGGT 57.316 45.000 0.00 0.00 0.00 4.83
4918 4933 2.543848 TCGCATGAAGAACTCAACACAC 59.456 45.455 0.00 0.00 37.67 3.82
4952 4970 3.782244 CCGAGAAGCTGCACGCAC 61.782 66.667 5.94 4.71 42.61 5.34
4953 4971 3.989787 TCCGAGAAGCTGCACGCA 61.990 61.111 5.94 0.00 42.61 5.24
4954 4972 3.482783 GTCCGAGAAGCTGCACGC 61.483 66.667 5.94 0.47 39.57 5.34
5010 5028 4.577283 CCTGAGTAGAACCAGTAGACTAGC 59.423 50.000 0.00 0.00 0.00 3.42
5017 5035 2.366533 CTCGCCTGAGTAGAACCAGTA 58.633 52.381 0.00 0.00 37.46 2.74
5409 5427 1.135489 GCGTCCAGATTCACGTACTCA 60.135 52.381 0.00 0.00 38.32 3.41
5435 5454 0.577269 CTATCTACAAAGCGCACGGC 59.423 55.000 11.47 0.00 44.05 5.68
5454 5473 1.065928 CAGCGTCCGTCCCTGTATC 59.934 63.158 0.00 0.00 0.00 2.24
5456 5475 2.282674 ACAGCGTCCGTCCCTGTA 60.283 61.111 0.00 0.00 38.00 2.74
5457 5476 3.681835 GACAGCGTCCGTCCCTGT 61.682 66.667 0.00 0.00 42.10 4.00
5458 5477 3.374402 AGACAGCGTCCGTCCCTG 61.374 66.667 5.29 0.00 33.70 4.45
5469 5488 0.886563 AAGAAAGCATGGCAGACAGC 59.113 50.000 0.00 0.00 44.65 4.40
5471 5490 1.881973 GTGAAGAAAGCATGGCAGACA 59.118 47.619 0.00 0.00 0.00 3.41
5472 5491 1.881973 TGTGAAGAAAGCATGGCAGAC 59.118 47.619 0.00 0.00 0.00 3.51
5473 5492 2.156917 CTGTGAAGAAAGCATGGCAGA 58.843 47.619 0.00 0.00 0.00 4.26
5474 5493 2.156917 TCTGTGAAGAAAGCATGGCAG 58.843 47.619 0.00 0.00 0.00 4.85
5475 5494 2.156917 CTCTGTGAAGAAAGCATGGCA 58.843 47.619 0.00 0.00 0.00 4.92
5476 5495 2.430465 TCTCTGTGAAGAAAGCATGGC 58.570 47.619 0.00 0.00 0.00 4.40
5477 5496 6.726230 CATATTCTCTGTGAAGAAAGCATGG 58.274 40.000 0.00 0.00 38.69 3.66
5478 5497 6.183360 TGCATATTCTCTGTGAAGAAAGCATG 60.183 38.462 11.07 0.00 38.69 4.06
5479 5498 5.884232 TGCATATTCTCTGTGAAGAAAGCAT 59.116 36.000 11.07 0.00 38.69 3.79
5480 5499 5.247862 TGCATATTCTCTGTGAAGAAAGCA 58.752 37.500 11.07 11.07 38.69 3.91
5481 5500 5.353678 ACTGCATATTCTCTGTGAAGAAAGC 59.646 40.000 0.00 7.49 38.69 3.51
5486 5505 6.336566 ACTACACTGCATATTCTCTGTGAAG 58.663 40.000 5.57 0.00 38.18 3.02
5509 5528 0.610687 ACAGCTCTGCTAACCCAGAC 59.389 55.000 0.00 0.00 36.40 3.51
5511 5530 2.191128 AAACAGCTCTGCTAACCCAG 57.809 50.000 0.00 0.00 36.40 4.45
5532 5551 1.551452 CTAACCCATCCCGCCAAAAA 58.449 50.000 0.00 0.00 0.00 1.94
5533 5552 0.968393 GCTAACCCATCCCGCCAAAA 60.968 55.000 0.00 0.00 0.00 2.44
5534 5553 1.379309 GCTAACCCATCCCGCCAAA 60.379 57.895 0.00 0.00 0.00 3.28
5535 5554 2.274104 GCTAACCCATCCCGCCAA 59.726 61.111 0.00 0.00 0.00 4.52
5536 5555 3.012119 TGCTAACCCATCCCGCCA 61.012 61.111 0.00 0.00 0.00 5.69
5537 5556 2.203209 CTGCTAACCCATCCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
5538 5557 1.227674 CTCTGCTAACCCATCCCGC 60.228 63.158 0.00 0.00 0.00 6.13
5539 5558 1.227674 GCTCTGCTAACCCATCCCG 60.228 63.158 0.00 0.00 0.00 5.14
5540 5559 0.179034 CTGCTCTGCTAACCCATCCC 60.179 60.000 0.00 0.00 0.00 3.85
5541 5560 0.833287 TCTGCTCTGCTAACCCATCC 59.167 55.000 0.00 0.00 0.00 3.51
5542 5561 1.809651 GCTCTGCTCTGCTAACCCATC 60.810 57.143 0.00 0.00 0.00 3.51
5543 5562 0.179936 GCTCTGCTCTGCTAACCCAT 59.820 55.000 0.00 0.00 0.00 4.00
5544 5563 0.906756 AGCTCTGCTCTGCTAACCCA 60.907 55.000 0.00 0.00 37.81 4.51
5545 5564 0.461693 CAGCTCTGCTCTGCTAACCC 60.462 60.000 0.00 0.00 36.40 4.11
5546 5565 0.248843 ACAGCTCTGCTCTGCTAACC 59.751 55.000 0.00 0.00 36.40 2.85
5547 5566 2.091852 AACAGCTCTGCTCTGCTAAC 57.908 50.000 0.00 0.00 36.40 2.34
5548 5567 2.828520 AGTAACAGCTCTGCTCTGCTAA 59.171 45.455 0.00 0.00 36.40 3.09
5549 5568 2.425312 GAGTAACAGCTCTGCTCTGCTA 59.575 50.000 3.85 0.00 36.40 3.49
5550 5569 1.204467 GAGTAACAGCTCTGCTCTGCT 59.796 52.381 3.85 0.00 36.40 4.24
5551 5570 1.639280 GAGTAACAGCTCTGCTCTGC 58.361 55.000 3.85 0.00 36.40 4.26
5552 5571 1.201181 ACGAGTAACAGCTCTGCTCTG 59.799 52.381 8.29 5.38 36.40 3.35
5553 5572 1.201181 CACGAGTAACAGCTCTGCTCT 59.799 52.381 8.29 0.00 36.40 4.09
5554 5573 1.623359 CACGAGTAACAGCTCTGCTC 58.377 55.000 0.00 0.00 36.40 4.26
5610 5659 2.378858 GCGTCTGTCAGCACTCAGC 61.379 63.158 0.00 0.00 46.19 4.26
5611 5660 1.006922 TGCGTCTGTCAGCACTCAG 60.007 57.895 0.00 0.00 38.59 3.35
5612 5661 3.128375 TGCGTCTGTCAGCACTCA 58.872 55.556 0.00 0.00 38.59 3.41
5616 5665 4.583866 TGCGTGCGTCTGTCAGCA 62.584 61.111 0.00 0.00 41.55 4.41
5617 5666 3.771491 CTGCGTGCGTCTGTCAGC 61.771 66.667 0.00 0.00 0.00 4.26
5649 5698 1.333169 GCGTCTGTTGTGATGTGTGTG 60.333 52.381 0.00 0.00 0.00 3.82
5650 5699 0.937304 GCGTCTGTTGTGATGTGTGT 59.063 50.000 0.00 0.00 0.00 3.72
5690 5744 2.526077 GTGTCTGTTGCGATGATCGTA 58.474 47.619 16.83 9.37 42.81 3.43
5691 5745 1.350193 GTGTCTGTTGCGATGATCGT 58.650 50.000 16.83 0.00 42.81 3.73
5692 5746 0.647410 GGTGTCTGTTGCGATGATCG 59.353 55.000 11.02 11.02 43.89 3.69
5700 5754 0.792640 CGTGATCAGGTGTCTGTTGC 59.207 55.000 7.25 0.00 41.59 4.17
5705 5759 1.115467 GGATCCGTGATCAGGTGTCT 58.885 55.000 13.98 0.00 40.50 3.41
5719 5773 4.496336 AGCAGGCAAGCCGGATCC 62.496 66.667 15.46 0.00 41.95 3.36
5721 5775 4.496336 GGAGCAGGCAAGCCGGAT 62.496 66.667 15.46 8.74 41.95 4.18
5739 5793 2.801631 GGAGTGATCGAGCAGGGGG 61.802 68.421 2.20 0.00 0.00 5.40
5740 5794 2.060383 TGGAGTGATCGAGCAGGGG 61.060 63.158 2.20 0.00 0.00 4.79
5741 5795 1.142748 GTGGAGTGATCGAGCAGGG 59.857 63.158 2.20 0.00 0.00 4.45
5742 5796 0.179116 CAGTGGAGTGATCGAGCAGG 60.179 60.000 2.20 0.00 0.00 4.85
5743 5797 0.805322 GCAGTGGAGTGATCGAGCAG 60.805 60.000 2.20 0.00 0.00 4.24
5744 5798 1.216444 GCAGTGGAGTGATCGAGCA 59.784 57.895 0.00 0.00 0.00 4.26
5745 5799 0.179089 ATGCAGTGGAGTGATCGAGC 60.179 55.000 0.00 0.00 0.00 5.03
5746 5800 2.544694 GGTATGCAGTGGAGTGATCGAG 60.545 54.545 0.00 0.00 0.00 4.04
5747 5801 1.409064 GGTATGCAGTGGAGTGATCGA 59.591 52.381 0.00 0.00 0.00 3.59
5748 5802 1.136891 TGGTATGCAGTGGAGTGATCG 59.863 52.381 0.00 0.00 0.00 3.69
5750 5804 3.939740 ATTGGTATGCAGTGGAGTGAT 57.060 42.857 0.00 0.00 0.00 3.06
5751 5805 3.719268 AATTGGTATGCAGTGGAGTGA 57.281 42.857 0.00 0.00 0.00 3.41
5752 5806 3.758023 TGAAATTGGTATGCAGTGGAGTG 59.242 43.478 0.00 0.00 0.00 3.51
5753 5807 4.032960 TGAAATTGGTATGCAGTGGAGT 57.967 40.909 0.00 0.00 0.00 3.85
5754 5808 4.641541 TGATGAAATTGGTATGCAGTGGAG 59.358 41.667 0.00 0.00 0.00 3.86
5755 5809 4.598022 TGATGAAATTGGTATGCAGTGGA 58.402 39.130 0.00 0.00 0.00 4.02
5756 5810 4.987408 TGATGAAATTGGTATGCAGTGG 57.013 40.909 0.00 0.00 0.00 4.00
5757 5811 4.794762 CGTTGATGAAATTGGTATGCAGTG 59.205 41.667 0.00 0.00 0.00 3.66
5758 5812 4.142403 CCGTTGATGAAATTGGTATGCAGT 60.142 41.667 0.00 0.00 0.00 4.40
5759 5813 4.142403 ACCGTTGATGAAATTGGTATGCAG 60.142 41.667 0.00 0.00 30.08 4.41
5760 5814 3.761218 ACCGTTGATGAAATTGGTATGCA 59.239 39.130 0.00 0.00 30.08 3.96
5761 5815 4.370364 ACCGTTGATGAAATTGGTATGC 57.630 40.909 0.00 0.00 30.08 3.14
5762 5816 5.510671 GCTACCGTTGATGAAATTGGTATG 58.489 41.667 0.00 0.00 33.58 2.39
5763 5817 4.272504 CGCTACCGTTGATGAAATTGGTAT 59.727 41.667 0.00 0.00 33.58 2.73
5764 5818 3.619483 CGCTACCGTTGATGAAATTGGTA 59.381 43.478 0.00 0.00 33.07 3.25
5765 5819 2.418628 CGCTACCGTTGATGAAATTGGT 59.581 45.455 0.00 0.00 34.69 3.67
5766 5820 2.791158 GCGCTACCGTTGATGAAATTGG 60.791 50.000 0.00 0.00 36.67 3.16
5767 5821 2.159585 TGCGCTACCGTTGATGAAATTG 60.160 45.455 9.73 0.00 36.67 2.32
5768 5822 2.080693 TGCGCTACCGTTGATGAAATT 58.919 42.857 9.73 0.00 36.67 1.82
5769 5823 1.396996 GTGCGCTACCGTTGATGAAAT 59.603 47.619 9.73 0.00 36.67 2.17
5770 5824 0.793861 GTGCGCTACCGTTGATGAAA 59.206 50.000 9.73 0.00 36.67 2.69
5771 5825 1.017177 GGTGCGCTACCGTTGATGAA 61.017 55.000 9.73 0.00 40.26 2.57
5781 5835 1.498865 CGAATGGGATGGTGCGCTAC 61.499 60.000 9.73 5.08 0.00 3.58
5791 5845 3.164269 AGCCGAGCCGAATGGGAT 61.164 61.111 0.00 0.00 38.47 3.85
5811 5865 0.321298 TTTAGTCCGTTGGCAGGAGC 60.321 55.000 0.00 0.00 38.65 4.70
5813 5867 1.053424 AGTTTAGTCCGTTGGCAGGA 58.947 50.000 0.00 0.00 34.99 3.86
5814 5868 2.028385 ACTAGTTTAGTCCGTTGGCAGG 60.028 50.000 0.00 0.00 32.47 4.85
5815 5869 3.314541 ACTAGTTTAGTCCGTTGGCAG 57.685 47.619 0.00 0.00 32.47 4.85
5862 5918 3.345714 GTTTCGCGTGATGATGATTGAC 58.654 45.455 5.77 0.00 0.00 3.18
5873 5929 1.274476 GCTTGTTCGTTTCGCGTGA 59.726 52.632 5.77 0.00 42.13 4.35
5874 5930 1.721133 GGCTTGTTCGTTTCGCGTG 60.721 57.895 5.77 0.00 42.13 5.34
5875 5931 2.629763 GGCTTGTTCGTTTCGCGT 59.370 55.556 5.77 0.00 42.13 6.01
5876 5932 2.419100 TTCGGCTTGTTCGTTTCGCG 62.419 55.000 0.00 0.00 43.01 5.87
5877 5933 0.316360 TTTCGGCTTGTTCGTTTCGC 60.316 50.000 0.00 0.00 0.00 4.70
5878 5934 2.093972 TTTTCGGCTTGTTCGTTTCG 57.906 45.000 0.00 0.00 0.00 3.46
5879 5935 5.456173 TGTTAATTTTCGGCTTGTTCGTTTC 59.544 36.000 0.00 0.00 0.00 2.78
5890 5946 3.003897 TCCAGTGTGTGTTAATTTTCGGC 59.996 43.478 0.00 0.00 0.00 5.54
5892 5948 5.204833 CAGTCCAGTGTGTGTTAATTTTCG 58.795 41.667 0.00 0.00 0.00 3.46
5899 5955 1.070134 GCTCCAGTCCAGTGTGTGTTA 59.930 52.381 0.00 0.00 0.00 2.41
5903 5959 0.179045 GTTGCTCCAGTCCAGTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
5905 5961 0.767375 ATGTTGCTCCAGTCCAGTGT 59.233 50.000 0.00 0.00 0.00 3.55
5906 5962 1.162698 CATGTTGCTCCAGTCCAGTG 58.837 55.000 0.00 0.00 0.00 3.66
5907 5963 0.037303 CCATGTTGCTCCAGTCCAGT 59.963 55.000 0.00 0.00 0.00 4.00
5908 5964 0.679002 CCCATGTTGCTCCAGTCCAG 60.679 60.000 0.00 0.00 0.00 3.86
5909 5965 1.133181 TCCCATGTTGCTCCAGTCCA 61.133 55.000 0.00 0.00 0.00 4.02
5910 5966 0.257039 ATCCCATGTTGCTCCAGTCC 59.743 55.000 0.00 0.00 0.00 3.85
5911 5967 1.386533 CATCCCATGTTGCTCCAGTC 58.613 55.000 0.00 0.00 0.00 3.51
5912 5968 0.033796 CCATCCCATGTTGCTCCAGT 60.034 55.000 0.00 0.00 0.00 4.00
5913 5969 0.256752 TCCATCCCATGTTGCTCCAG 59.743 55.000 0.00 0.00 0.00 3.86
5914 5970 0.928505 ATCCATCCCATGTTGCTCCA 59.071 50.000 0.00 0.00 0.00 3.86
5930 5986 1.625818 ACCGAGCTAATCCATCCATCC 59.374 52.381 0.00 0.00 0.00 3.51
5931 5987 2.354203 GGACCGAGCTAATCCATCCATC 60.354 54.545 5.67 0.00 31.41 3.51
5933 5989 1.048601 GGACCGAGCTAATCCATCCA 58.951 55.000 5.67 0.00 31.41 3.41
5934 5990 0.038159 CGGACCGAGCTAATCCATCC 60.038 60.000 8.64 1.21 32.35 3.51
5935 5991 0.674534 ACGGACCGAGCTAATCCATC 59.325 55.000 23.38 0.00 32.35 3.51
5936 5992 0.674534 GACGGACCGAGCTAATCCAT 59.325 55.000 23.38 0.00 32.35 3.41
5937 5993 1.389609 GGACGGACCGAGCTAATCCA 61.390 60.000 23.38 0.00 32.35 3.41
5938 5994 1.363080 GGACGGACCGAGCTAATCC 59.637 63.158 23.38 12.23 0.00 3.01
5948 6004 0.314935 TGTTGACTAACGGACGGACC 59.685 55.000 0.00 0.00 39.71 4.46
5949 6005 1.668047 CCTGTTGACTAACGGACGGAC 60.668 57.143 0.78 0.00 44.32 4.79
5952 6008 1.012486 GCCCTGTTGACTAACGGACG 61.012 60.000 0.78 0.00 44.32 4.79
5959 6015 1.888436 CGAGCTGGCCCTGTTGACTA 61.888 60.000 0.00 0.00 0.00 2.59
6030 6090 2.126071 TTGGACTCTAGCGCGTGC 60.126 61.111 14.39 14.39 43.24 5.34
6048 6108 2.133359 AACCCTACCCTGGTTTCGGC 62.133 60.000 0.00 0.00 43.52 5.54
6051 6111 0.035725 CGGAACCCTACCCTGGTTTC 60.036 60.000 0.00 0.00 45.93 2.78
6070 6130 2.230508 GGGCTACTTGGGCTTTGTTTAC 59.769 50.000 0.00 0.00 0.00 2.01
6152 6212 3.818121 TTCCGTTGGTCGCTGTGGG 62.818 63.158 0.00 0.00 38.35 4.61
6156 6216 3.411351 CCGTTCCGTTGGTCGCTG 61.411 66.667 0.00 0.00 38.35 5.18
6189 6249 4.331968 CCCACAGGATTGCAACTAGTTTA 58.668 43.478 5.07 0.00 33.47 2.01
6190 6250 3.157087 CCCACAGGATTGCAACTAGTTT 58.843 45.455 5.07 0.00 33.47 2.66
6191 6251 2.555227 CCCCACAGGATTGCAACTAGTT 60.555 50.000 0.00 1.12 38.24 2.24
6205 6265 2.030562 GTCGACACACCCCCACAG 59.969 66.667 11.55 0.00 0.00 3.66
6312 6397 2.887568 GACGGTGCAGGCGATGAG 60.888 66.667 0.00 0.00 0.00 2.90
6316 6401 4.056125 CTCAGACGGTGCAGGCGA 62.056 66.667 0.00 0.00 0.00 5.54
6320 6405 4.056125 TCGCCTCAGACGGTGCAG 62.056 66.667 0.00 0.00 34.56 4.41
6321 6406 4.357947 GTCGCCTCAGACGGTGCA 62.358 66.667 0.00 0.00 34.56 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.