Multiple sequence alignment - TraesCS7A01G465000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G465000 chr7A 100.000 3714 0 0 1 3714 661575088 661578801 0.000000e+00 6859.0
1 TraesCS7A01G465000 chr7D 89.528 3094 132 44 721 3714 572537835 572540836 0.000000e+00 3742.0
2 TraesCS7A01G465000 chr7D 86.471 340 16 1 2025 2364 138312870 138312561 2.750000e-91 346.0
3 TraesCS7A01G465000 chr7B 90.745 2107 103 32 720 2777 629788900 629786837 0.000000e+00 2726.0
4 TraesCS7A01G465000 chr7B 85.043 936 60 31 2839 3714 629786815 629785900 0.000000e+00 880.0
5 TraesCS7A01G465000 chr1A 89.600 875 40 16 1824 2688 59587692 59586859 0.000000e+00 1064.0
6 TraesCS7A01G465000 chr1A 89.238 446 36 5 1319 1755 59588128 59587686 7.010000e-152 547.0
7 TraesCS7A01G465000 chr1A 82.308 130 8 4 2779 2893 59586784 59586655 8.490000e-17 99.0
8 TraesCS7A01G465000 chr5A 89.220 872 50 21 1823 2688 328011010 328010177 0.000000e+00 1050.0
9 TraesCS7A01G465000 chr5A 89.220 872 50 21 1823 2688 328017251 328016418 0.000000e+00 1050.0
10 TraesCS7A01G465000 chr5A 91.549 213 15 2 1543 1755 328011212 328011003 1.300000e-74 291.0
11 TraesCS7A01G465000 chr5A 89.520 229 21 2 1319 1547 328023120 328022895 1.690000e-73 287.0
12 TraesCS7A01G465000 chr5A 90.476 63 6 0 1693 1755 328017306 328017244 2.380000e-12 84.2
13 TraesCS7A01G465000 chr2D 93.750 80 4 1 1819 1897 576421624 576421703 6.520000e-23 119.0
14 TraesCS7A01G465000 chr6B 80.405 148 16 8 1342 1487 177793588 177793724 2.360000e-17 100.0
15 TraesCS7A01G465000 chr3D 97.368 38 1 0 2327 2364 579162836 579162873 8.610000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G465000 chr7A 661575088 661578801 3713 False 6859.0 6859 100.000000 1 3714 1 chr7A.!!$F1 3713
1 TraesCS7A01G465000 chr7D 572537835 572540836 3001 False 3742.0 3742 89.528000 721 3714 1 chr7D.!!$F1 2993
2 TraesCS7A01G465000 chr7B 629785900 629788900 3000 True 1803.0 2726 87.894000 720 3714 2 chr7B.!!$R1 2994
3 TraesCS7A01G465000 chr1A 59586655 59588128 1473 True 570.0 1064 87.048667 1319 2893 3 chr1A.!!$R1 1574
4 TraesCS7A01G465000 chr5A 328010177 328011212 1035 True 670.5 1050 90.384500 1543 2688 2 chr5A.!!$R2 1145
5 TraesCS7A01G465000 chr5A 328016418 328017306 888 True 567.1 1050 89.848000 1693 2688 2 chr5A.!!$R3 995

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
633 634 0.179001 CCTTCCGTTTCCACCAACCT 60.179 55.0 0.0 0.0 0.00 3.50 F
1604 1643 0.109412 CGGACCAGTACGTGTTCTCC 60.109 60.0 0.0 0.0 30.94 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1783 1912 0.108424 CTGGAGGAGGAACTTGAGCG 60.108 60.0 0.0 0.0 41.55 5.03 R
3016 3258 0.322816 GGTGAAATGGGCTCTGCTGA 60.323 55.0 0.0 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 9.698309 TTTATTATTCTTTTGATTTTGCCACGA 57.302 25.926 0.00 0.00 0.00 4.35
66 67 7.581011 ATTATTCTTTTGATTTTGCCACGAC 57.419 32.000 0.00 0.00 0.00 4.34
67 68 4.377839 TTCTTTTGATTTTGCCACGACA 57.622 36.364 0.00 0.00 0.00 4.35
68 69 4.377839 TCTTTTGATTTTGCCACGACAA 57.622 36.364 0.00 0.00 0.00 3.18
69 70 4.358851 TCTTTTGATTTTGCCACGACAAG 58.641 39.130 0.00 0.00 0.00 3.16
70 71 3.791973 TTTGATTTTGCCACGACAAGT 57.208 38.095 0.00 0.00 0.00 3.16
71 72 3.791973 TTGATTTTGCCACGACAAGTT 57.208 38.095 0.00 0.00 0.00 2.66
72 73 3.791973 TGATTTTGCCACGACAAGTTT 57.208 38.095 0.00 0.00 0.00 2.66
73 74 4.902443 TGATTTTGCCACGACAAGTTTA 57.098 36.364 0.00 0.00 0.00 2.01
74 75 5.250235 TGATTTTGCCACGACAAGTTTAA 57.750 34.783 0.00 0.00 0.00 1.52
75 76 5.837437 TGATTTTGCCACGACAAGTTTAAT 58.163 33.333 0.00 0.00 0.00 1.40
76 77 6.971602 TGATTTTGCCACGACAAGTTTAATA 58.028 32.000 0.00 0.00 0.00 0.98
77 78 7.598278 TGATTTTGCCACGACAAGTTTAATAT 58.402 30.769 0.00 0.00 0.00 1.28
78 79 7.540400 TGATTTTGCCACGACAAGTTTAATATG 59.460 33.333 0.00 0.00 0.00 1.78
79 80 4.349663 TGCCACGACAAGTTTAATATGC 57.650 40.909 0.00 0.00 0.00 3.14
80 81 3.753797 TGCCACGACAAGTTTAATATGCA 59.246 39.130 0.00 0.00 0.00 3.96
81 82 4.397730 TGCCACGACAAGTTTAATATGCAT 59.602 37.500 3.79 3.79 0.00 3.96
82 83 5.105957 TGCCACGACAAGTTTAATATGCATT 60.106 36.000 3.54 0.00 0.00 3.56
83 84 5.804979 GCCACGACAAGTTTAATATGCATTT 59.195 36.000 3.54 1.81 0.00 2.32
84 85 6.237542 GCCACGACAAGTTTAATATGCATTTG 60.238 38.462 3.54 3.81 0.00 2.32
85 86 6.806249 CCACGACAAGTTTAATATGCATTTGT 59.194 34.615 3.54 7.50 0.00 2.83
86 87 7.008266 CCACGACAAGTTTAATATGCATTTGTC 59.992 37.037 20.64 20.64 39.45 3.18
87 88 7.536964 CACGACAAGTTTAATATGCATTTGTCA 59.463 33.333 25.97 4.16 41.63 3.58
88 89 8.243426 ACGACAAGTTTAATATGCATTTGTCAT 58.757 29.630 25.97 15.82 41.63 3.06
89 90 8.525876 CGACAAGTTTAATATGCATTTGTCATG 58.474 33.333 25.97 14.27 41.63 3.07
90 91 8.706492 ACAAGTTTAATATGCATTTGTCATGG 57.294 30.769 3.54 0.00 0.00 3.66
91 92 7.278424 ACAAGTTTAATATGCATTTGTCATGGC 59.722 33.333 3.54 0.00 0.00 4.40
92 93 6.876155 AGTTTAATATGCATTTGTCATGGCA 58.124 32.000 3.54 0.00 41.00 4.92
94 95 7.988599 AGTTTAATATGCATTTGTCATGGCATT 59.011 29.630 3.54 0.00 43.97 3.56
95 96 8.614346 GTTTAATATGCATTTGTCATGGCATTT 58.386 29.630 3.54 3.59 43.97 2.32
96 97 8.734218 TTAATATGCATTTGTCATGGCATTTT 57.266 26.923 3.54 7.01 43.97 1.82
97 98 7.633193 AATATGCATTTGTCATGGCATTTTT 57.367 28.000 3.54 0.00 43.97 1.94
127 128 7.953158 TTTCATTATTCGTTTGATTTTGCCA 57.047 28.000 0.00 0.00 0.00 4.92
128 129 6.942886 TCATTATTCGTTTGATTTTGCCAC 57.057 33.333 0.00 0.00 0.00 5.01
129 130 5.570973 TCATTATTCGTTTGATTTTGCCACG 59.429 36.000 0.00 0.00 0.00 4.94
130 131 3.634568 ATTCGTTTGATTTTGCCACGA 57.365 38.095 0.00 0.00 38.07 4.35
131 132 3.634568 TTCGTTTGATTTTGCCACGAT 57.365 38.095 0.00 0.00 39.46 3.73
132 133 4.750952 TTCGTTTGATTTTGCCACGATA 57.249 36.364 0.00 0.00 39.46 2.92
133 134 4.750952 TCGTTTGATTTTGCCACGATAA 57.249 36.364 0.00 0.00 35.05 1.75
134 135 4.717991 TCGTTTGATTTTGCCACGATAAG 58.282 39.130 0.00 0.00 35.05 1.73
135 136 4.214545 TCGTTTGATTTTGCCACGATAAGT 59.785 37.500 0.00 0.00 35.05 2.24
136 137 4.915085 CGTTTGATTTTGCCACGATAAGTT 59.085 37.500 0.00 0.00 32.51 2.66
137 138 5.401079 CGTTTGATTTTGCCACGATAAGTTT 59.599 36.000 0.00 0.00 32.51 2.66
138 139 6.579292 CGTTTGATTTTGCCACGATAAGTTTA 59.421 34.615 0.00 0.00 32.51 2.01
139 140 7.113684 CGTTTGATTTTGCCACGATAAGTTTAA 59.886 33.333 0.00 0.00 32.51 1.52
140 141 8.921670 GTTTGATTTTGCCACGATAAGTTTAAT 58.078 29.630 0.00 0.00 0.00 1.40
142 143 9.781834 TTGATTTTGCCACGATAAGTTTAATAG 57.218 29.630 0.00 0.00 0.00 1.73
143 144 8.402472 TGATTTTGCCACGATAAGTTTAATAGG 58.598 33.333 0.00 0.00 0.00 2.57
144 145 5.744666 TTGCCACGATAAGTTTAATAGGC 57.255 39.130 0.00 0.00 39.95 3.93
145 146 4.771903 TGCCACGATAAGTTTAATAGGCA 58.228 39.130 0.00 0.00 46.31 4.75
146 147 5.373222 TGCCACGATAAGTTTAATAGGCAT 58.627 37.500 0.00 0.00 43.93 4.40
147 148 5.468746 TGCCACGATAAGTTTAATAGGCATC 59.531 40.000 0.00 0.00 43.93 3.91
148 149 5.701290 GCCACGATAAGTTTAATAGGCATCT 59.299 40.000 0.00 0.00 39.35 2.90
149 150 6.347725 GCCACGATAAGTTTAATAGGCATCTG 60.348 42.308 0.00 0.00 39.35 2.90
150 151 6.347725 CCACGATAAGTTTAATAGGCATCTGC 60.348 42.308 0.00 0.00 41.14 4.26
211 212 3.641031 GCTTTGCCACGACAAGTTT 57.359 47.368 0.00 0.00 0.00 2.66
212 213 2.766970 GCTTTGCCACGACAAGTTTA 57.233 45.000 0.00 0.00 0.00 2.01
213 214 3.073144 GCTTTGCCACGACAAGTTTAA 57.927 42.857 0.00 0.00 0.00 1.52
214 215 3.638484 GCTTTGCCACGACAAGTTTAAT 58.362 40.909 0.00 0.00 0.00 1.40
215 216 3.425193 GCTTTGCCACGACAAGTTTAATG 59.575 43.478 0.00 0.00 0.00 1.90
216 217 4.791411 GCTTTGCCACGACAAGTTTAATGA 60.791 41.667 0.00 0.00 0.00 2.57
217 218 5.446143 TTTGCCACGACAAGTTTAATGAT 57.554 34.783 0.00 0.00 0.00 2.45
218 219 4.418013 TGCCACGACAAGTTTAATGATG 57.582 40.909 0.00 0.00 0.00 3.07
219 220 3.171277 GCCACGACAAGTTTAATGATGC 58.829 45.455 0.00 0.00 0.00 3.91
220 221 3.365868 GCCACGACAAGTTTAATGATGCA 60.366 43.478 0.00 0.00 0.00 3.96
221 222 4.675146 GCCACGACAAGTTTAATGATGCAT 60.675 41.667 0.00 0.00 0.00 3.96
222 223 5.401550 CCACGACAAGTTTAATGATGCATT 58.598 37.500 0.00 0.00 37.80 3.56
223 224 5.863397 CCACGACAAGTTTAATGATGCATTT 59.137 36.000 0.00 0.00 35.54 2.32
224 225 7.026562 CCACGACAAGTTTAATGATGCATTTA 58.973 34.615 0.00 0.00 35.54 1.40
225 226 7.701924 CCACGACAAGTTTAATGATGCATTTAT 59.298 33.333 0.00 0.00 35.54 1.40
226 227 9.075519 CACGACAAGTTTAATGATGCATTTATT 57.924 29.630 0.00 7.94 35.54 1.40
227 228 9.638239 ACGACAAGTTTAATGATGCATTTATTT 57.362 25.926 13.26 3.43 35.54 1.40
240 241 9.006839 TGATGCATTTATTTTATGTTTTTGCCA 57.993 25.926 0.00 0.00 0.00 4.92
242 243 9.790389 ATGCATTTATTTTATGTTTTTGCCATG 57.210 25.926 0.00 0.00 0.00 3.66
243 244 9.006839 TGCATTTATTTTATGTTTTTGCCATGA 57.993 25.926 0.00 0.00 0.00 3.07
244 245 9.276397 GCATTTATTTTATGTTTTTGCCATGAC 57.724 29.630 0.00 0.00 0.00 3.06
248 249 7.982761 ATTTTATGTTTTTGCCATGACATGT 57.017 28.000 14.26 0.00 34.76 3.21
249 250 7.798596 TTTTATGTTTTTGCCATGACATGTT 57.201 28.000 14.26 0.00 34.76 2.71
250 251 7.798596 TTTATGTTTTTGCCATGACATGTTT 57.201 28.000 14.26 0.00 34.76 2.83
251 252 8.893219 TTTATGTTTTTGCCATGACATGTTTA 57.107 26.923 14.26 0.00 34.76 2.01
252 253 9.499479 TTTATGTTTTTGCCATGACATGTTTAT 57.501 25.926 14.26 0.00 34.76 1.40
253 254 7.982761 ATGTTTTTGCCATGACATGTTTATT 57.017 28.000 14.26 0.00 31.94 1.40
255 256 9.669887 ATGTTTTTGCCATGACATGTTTATTAT 57.330 25.926 14.26 0.00 31.94 1.28
256 257 9.499479 TGTTTTTGCCATGACATGTTTATTATT 57.501 25.926 14.26 0.00 0.00 1.40
257 258 9.757859 GTTTTTGCCATGACATGTTTATTATTG 57.242 29.630 14.26 0.00 0.00 1.90
258 259 9.716531 TTTTTGCCATGACATGTTTATTATTGA 57.283 25.926 14.26 0.00 0.00 2.57
259 260 8.929827 TTTGCCATGACATGTTTATTATTGAG 57.070 30.769 14.26 0.00 0.00 3.02
260 261 7.041635 TGCCATGACATGTTTATTATTGAGG 57.958 36.000 14.26 0.00 0.00 3.86
261 262 6.040729 TGCCATGACATGTTTATTATTGAGGG 59.959 38.462 14.26 0.00 0.00 4.30
262 263 6.449698 CCATGACATGTTTATTATTGAGGGC 58.550 40.000 14.26 0.00 0.00 5.19
263 264 6.040729 CCATGACATGTTTATTATTGAGGGCA 59.959 38.462 14.26 0.00 0.00 5.36
264 265 7.256048 CCATGACATGTTTATTATTGAGGGCAT 60.256 37.037 14.26 0.00 0.00 4.40
265 266 7.041635 TGACATGTTTATTATTGAGGGCATG 57.958 36.000 0.00 0.00 38.57 4.06
266 267 6.606796 TGACATGTTTATTATTGAGGGCATGT 59.393 34.615 0.00 6.55 45.32 3.21
267 268 7.042797 ACATGTTTATTATTGAGGGCATGTC 57.957 36.000 0.00 0.00 40.82 3.06
268 269 6.606796 ACATGTTTATTATTGAGGGCATGTCA 59.393 34.615 0.00 0.00 40.82 3.58
269 270 7.288389 ACATGTTTATTATTGAGGGCATGTCAT 59.712 33.333 0.00 0.00 40.82 3.06
270 271 7.658525 TGTTTATTATTGAGGGCATGTCATT 57.341 32.000 0.00 0.00 0.00 2.57
271 272 8.076910 TGTTTATTATTGAGGGCATGTCATTT 57.923 30.769 0.00 0.00 0.00 2.32
272 273 8.538701 TGTTTATTATTGAGGGCATGTCATTTT 58.461 29.630 0.00 0.00 0.00 1.82
273 274 9.382275 GTTTATTATTGAGGGCATGTCATTTTT 57.618 29.630 0.00 0.00 0.00 1.94
277 278 5.596836 TTGAGGGCATGTCATTTTTATCC 57.403 39.130 0.00 0.00 0.00 2.59
278 279 4.870636 TGAGGGCATGTCATTTTTATCCT 58.129 39.130 0.00 0.00 0.00 3.24
279 280 5.271598 TGAGGGCATGTCATTTTTATCCTT 58.728 37.500 0.00 0.00 0.00 3.36
280 281 6.430864 TGAGGGCATGTCATTTTTATCCTTA 58.569 36.000 0.00 0.00 0.00 2.69
281 282 6.894654 TGAGGGCATGTCATTTTTATCCTTAA 59.105 34.615 0.00 0.00 0.00 1.85
282 283 7.068593 TGAGGGCATGTCATTTTTATCCTTAAG 59.931 37.037 0.00 0.00 0.00 1.85
283 284 6.324770 AGGGCATGTCATTTTTATCCTTAAGG 59.675 38.462 15.98 15.98 0.00 2.69
284 285 5.985530 GGCATGTCATTTTTATCCTTAAGGC 59.014 40.000 17.32 0.00 34.44 4.35
285 286 5.687285 GCATGTCATTTTTATCCTTAAGGCG 59.313 40.000 17.32 0.00 34.44 5.52
286 287 6.680378 GCATGTCATTTTTATCCTTAAGGCGT 60.680 38.462 17.32 10.26 34.44 5.68
287 288 6.189677 TGTCATTTTTATCCTTAAGGCGTG 57.810 37.500 17.32 7.29 34.44 5.34
288 289 5.708230 TGTCATTTTTATCCTTAAGGCGTGT 59.292 36.000 17.32 5.33 34.44 4.49
289 290 6.128117 TGTCATTTTTATCCTTAAGGCGTGTC 60.128 38.462 17.32 5.95 34.44 3.67
290 291 5.355910 TCATTTTTATCCTTAAGGCGTGTCC 59.644 40.000 17.32 0.00 34.44 4.02
302 303 4.929819 AGGCGTGTCCTTTTTATTGTTT 57.070 36.364 0.00 0.00 44.75 2.83
303 304 4.616953 AGGCGTGTCCTTTTTATTGTTTG 58.383 39.130 0.00 0.00 44.75 2.93
304 305 4.339814 AGGCGTGTCCTTTTTATTGTTTGA 59.660 37.500 0.00 0.00 44.75 2.69
305 306 4.679654 GGCGTGTCCTTTTTATTGTTTGAG 59.320 41.667 0.00 0.00 0.00 3.02
306 307 5.506649 GGCGTGTCCTTTTTATTGTTTGAGA 60.507 40.000 0.00 0.00 0.00 3.27
307 308 5.625311 GCGTGTCCTTTTTATTGTTTGAGAG 59.375 40.000 0.00 0.00 0.00 3.20
308 309 5.625311 CGTGTCCTTTTTATTGTTTGAGAGC 59.375 40.000 0.00 0.00 0.00 4.09
309 310 6.503524 GTGTCCTTTTTATTGTTTGAGAGCA 58.496 36.000 0.00 0.00 0.00 4.26
310 311 7.147976 GTGTCCTTTTTATTGTTTGAGAGCAT 58.852 34.615 0.00 0.00 0.00 3.79
311 312 7.115378 GTGTCCTTTTTATTGTTTGAGAGCATG 59.885 37.037 0.00 0.00 0.00 4.06
312 313 6.587608 GTCCTTTTTATTGTTTGAGAGCATGG 59.412 38.462 0.00 0.00 0.00 3.66
313 314 6.493115 TCCTTTTTATTGTTTGAGAGCATGGA 59.507 34.615 0.00 0.00 0.00 3.41
314 315 7.015098 TCCTTTTTATTGTTTGAGAGCATGGAA 59.985 33.333 0.00 0.00 0.00 3.53
315 316 7.656948 CCTTTTTATTGTTTGAGAGCATGGAAA 59.343 33.333 0.00 0.00 0.00 3.13
316 317 9.211485 CTTTTTATTGTTTGAGAGCATGGAAAT 57.789 29.630 0.00 0.00 0.00 2.17
317 318 9.558396 TTTTTATTGTTTGAGAGCATGGAAATT 57.442 25.926 0.00 0.00 0.00 1.82
318 319 9.558396 TTTTATTGTTTGAGAGCATGGAAATTT 57.442 25.926 0.00 0.00 0.00 1.82
319 320 9.558396 TTTATTGTTTGAGAGCATGGAAATTTT 57.442 25.926 0.00 0.00 0.00 1.82
320 321 9.558396 TTATTGTTTGAGAGCATGGAAATTTTT 57.442 25.926 0.00 0.00 0.00 1.94
322 323 8.954950 TTGTTTGAGAGCATGGAAATTTTTAA 57.045 26.923 0.00 0.00 0.00 1.52
323 324 9.558396 TTGTTTGAGAGCATGGAAATTTTTAAT 57.442 25.926 0.00 0.00 0.00 1.40
324 325 9.206870 TGTTTGAGAGCATGGAAATTTTTAATC 57.793 29.630 0.00 0.00 0.00 1.75
325 326 9.428097 GTTTGAGAGCATGGAAATTTTTAATCT 57.572 29.630 0.00 0.00 0.00 2.40
350 351 9.846248 CTATAGCATGGTATTTTTCTTATTGGC 57.154 33.333 21.65 0.00 0.00 4.52
351 352 6.796785 AGCATGGTATTTTTCTTATTGGCT 57.203 33.333 0.00 0.00 0.00 4.75
352 353 7.186570 AGCATGGTATTTTTCTTATTGGCTT 57.813 32.000 0.00 0.00 0.00 4.35
353 354 7.043565 AGCATGGTATTTTTCTTATTGGCTTG 58.956 34.615 0.00 0.00 0.00 4.01
354 355 7.041107 GCATGGTATTTTTCTTATTGGCTTGA 58.959 34.615 0.00 0.00 0.00 3.02
355 356 7.010460 GCATGGTATTTTTCTTATTGGCTTGAC 59.990 37.037 0.00 0.00 0.00 3.18
356 357 7.531857 TGGTATTTTTCTTATTGGCTTGACA 57.468 32.000 0.00 0.00 0.00 3.58
357 358 7.375053 TGGTATTTTTCTTATTGGCTTGACAC 58.625 34.615 0.00 0.00 0.00 3.67
358 359 6.811665 GGTATTTTTCTTATTGGCTTGACACC 59.188 38.462 0.00 0.00 0.00 4.16
359 360 6.670695 ATTTTTCTTATTGGCTTGACACCT 57.329 33.333 0.00 0.00 0.00 4.00
360 361 6.478512 TTTTTCTTATTGGCTTGACACCTT 57.521 33.333 0.00 0.00 0.00 3.50
361 362 6.478512 TTTTCTTATTGGCTTGACACCTTT 57.521 33.333 0.00 0.00 0.00 3.11
362 363 6.478512 TTTCTTATTGGCTTGACACCTTTT 57.521 33.333 0.00 0.00 0.00 2.27
363 364 7.589958 TTTCTTATTGGCTTGACACCTTTTA 57.410 32.000 0.00 0.00 0.00 1.52
364 365 7.775053 TTCTTATTGGCTTGACACCTTTTAT 57.225 32.000 0.00 0.00 0.00 1.40
365 366 7.775053 TCTTATTGGCTTGACACCTTTTATT 57.225 32.000 0.00 0.00 0.00 1.40
366 367 8.189119 TCTTATTGGCTTGACACCTTTTATTT 57.811 30.769 0.00 0.00 0.00 1.40
367 368 8.646900 TCTTATTGGCTTGACACCTTTTATTTT 58.353 29.630 0.00 0.00 0.00 1.82
368 369 9.271828 CTTATTGGCTTGACACCTTTTATTTTT 57.728 29.630 0.00 0.00 0.00 1.94
369 370 6.917217 TTGGCTTGACACCTTTTATTTTTG 57.083 33.333 0.00 0.00 0.00 2.44
370 371 6.227298 TGGCTTGACACCTTTTATTTTTGA 57.773 33.333 0.00 0.00 0.00 2.69
371 372 6.644347 TGGCTTGACACCTTTTATTTTTGAA 58.356 32.000 0.00 0.00 0.00 2.69
372 373 7.106239 TGGCTTGACACCTTTTATTTTTGAAA 58.894 30.769 0.00 0.00 0.00 2.69
373 374 7.607991 TGGCTTGACACCTTTTATTTTTGAAAA 59.392 29.630 0.00 0.00 0.00 2.29
374 375 8.620416 GGCTTGACACCTTTTATTTTTGAAAAT 58.380 29.630 6.88 6.88 41.24 1.82
518 519 9.805966 CTTTTCTTAAATTTTGTTAATTCCGCC 57.194 29.630 0.00 0.00 0.00 6.13
519 520 8.888579 TTTCTTAAATTTTGTTAATTCCGCCA 57.111 26.923 0.00 0.00 0.00 5.69
520 521 8.527567 TTCTTAAATTTTGTTAATTCCGCCAG 57.472 30.769 0.00 0.00 0.00 4.85
521 522 7.887381 TCTTAAATTTTGTTAATTCCGCCAGA 58.113 30.769 0.00 0.00 0.00 3.86
522 523 8.527810 TCTTAAATTTTGTTAATTCCGCCAGAT 58.472 29.630 0.00 0.00 0.00 2.90
523 524 9.796120 CTTAAATTTTGTTAATTCCGCCAGATA 57.204 29.630 0.00 0.00 0.00 1.98
524 525 9.575783 TTAAATTTTGTTAATTCCGCCAGATAC 57.424 29.630 0.00 0.00 0.00 2.24
525 526 6.767524 ATTTTGTTAATTCCGCCAGATACA 57.232 33.333 0.00 0.00 0.00 2.29
526 527 5.811399 TTTGTTAATTCCGCCAGATACAG 57.189 39.130 0.00 0.00 0.00 2.74
527 528 4.746535 TGTTAATTCCGCCAGATACAGA 57.253 40.909 0.00 0.00 0.00 3.41
528 529 5.290493 TGTTAATTCCGCCAGATACAGAT 57.710 39.130 0.00 0.00 0.00 2.90
529 530 5.680619 TGTTAATTCCGCCAGATACAGATT 58.319 37.500 0.00 0.00 0.00 2.40
530 531 5.758296 TGTTAATTCCGCCAGATACAGATTC 59.242 40.000 0.00 0.00 0.00 2.52
531 532 2.910688 TTCCGCCAGATACAGATTCC 57.089 50.000 0.00 0.00 0.00 3.01
532 533 2.088104 TCCGCCAGATACAGATTCCT 57.912 50.000 0.00 0.00 0.00 3.36
533 534 1.964223 TCCGCCAGATACAGATTCCTC 59.036 52.381 0.00 0.00 0.00 3.71
534 535 1.967066 CCGCCAGATACAGATTCCTCT 59.033 52.381 0.00 0.00 0.00 3.69
535 536 2.366916 CCGCCAGATACAGATTCCTCTT 59.633 50.000 0.00 0.00 0.00 2.85
536 537 3.181461 CCGCCAGATACAGATTCCTCTTT 60.181 47.826 0.00 0.00 0.00 2.52
537 538 4.054671 CGCCAGATACAGATTCCTCTTTC 58.945 47.826 0.00 0.00 0.00 2.62
538 539 4.442052 CGCCAGATACAGATTCCTCTTTCA 60.442 45.833 0.00 0.00 0.00 2.69
539 540 5.431765 GCCAGATACAGATTCCTCTTTCAA 58.568 41.667 0.00 0.00 0.00 2.69
540 541 5.526846 GCCAGATACAGATTCCTCTTTCAAG 59.473 44.000 0.00 0.00 0.00 3.02
541 542 5.526846 CCAGATACAGATTCCTCTTTCAAGC 59.473 44.000 0.00 0.00 0.00 4.01
542 543 5.526846 CAGATACAGATTCCTCTTTCAAGCC 59.473 44.000 0.00 0.00 0.00 4.35
543 544 3.078891 ACAGATTCCTCTTTCAAGCCC 57.921 47.619 0.00 0.00 0.00 5.19
544 545 2.376518 ACAGATTCCTCTTTCAAGCCCA 59.623 45.455 0.00 0.00 0.00 5.36
545 546 2.751806 CAGATTCCTCTTTCAAGCCCAC 59.248 50.000 0.00 0.00 0.00 4.61
546 547 2.376518 AGATTCCTCTTTCAAGCCCACA 59.623 45.455 0.00 0.00 0.00 4.17
547 548 2.746279 TTCCTCTTTCAAGCCCACAA 57.254 45.000 0.00 0.00 0.00 3.33
548 549 2.978156 TCCTCTTTCAAGCCCACAAT 57.022 45.000 0.00 0.00 0.00 2.71
549 550 2.795329 TCCTCTTTCAAGCCCACAATC 58.205 47.619 0.00 0.00 0.00 2.67
550 551 1.470098 CCTCTTTCAAGCCCACAATCG 59.530 52.381 0.00 0.00 0.00 3.34
551 552 2.154462 CTCTTTCAAGCCCACAATCGT 58.846 47.619 0.00 0.00 0.00 3.73
552 553 2.151202 TCTTTCAAGCCCACAATCGTC 58.849 47.619 0.00 0.00 0.00 4.20
553 554 1.879380 CTTTCAAGCCCACAATCGTCA 59.121 47.619 0.00 0.00 0.00 4.35
554 555 1.974265 TTCAAGCCCACAATCGTCAA 58.026 45.000 0.00 0.00 0.00 3.18
555 556 1.974265 TCAAGCCCACAATCGTCAAA 58.026 45.000 0.00 0.00 0.00 2.69
556 557 2.513753 TCAAGCCCACAATCGTCAAAT 58.486 42.857 0.00 0.00 0.00 2.32
557 558 3.680490 TCAAGCCCACAATCGTCAAATA 58.320 40.909 0.00 0.00 0.00 1.40
558 559 4.075682 TCAAGCCCACAATCGTCAAATAA 58.924 39.130 0.00 0.00 0.00 1.40
559 560 4.704540 TCAAGCCCACAATCGTCAAATAAT 59.295 37.500 0.00 0.00 0.00 1.28
560 561 5.883115 TCAAGCCCACAATCGTCAAATAATA 59.117 36.000 0.00 0.00 0.00 0.98
561 562 6.375736 TCAAGCCCACAATCGTCAAATAATAA 59.624 34.615 0.00 0.00 0.00 1.40
562 563 6.377327 AGCCCACAATCGTCAAATAATAAG 57.623 37.500 0.00 0.00 0.00 1.73
563 564 4.976116 GCCCACAATCGTCAAATAATAAGC 59.024 41.667 0.00 0.00 0.00 3.09
564 565 5.519722 CCCACAATCGTCAAATAATAAGCC 58.480 41.667 0.00 0.00 0.00 4.35
565 566 5.204833 CCACAATCGTCAAATAATAAGCCG 58.795 41.667 0.00 0.00 0.00 5.52
566 567 5.204833 CACAATCGTCAAATAATAAGCCGG 58.795 41.667 0.00 0.00 0.00 6.13
567 568 4.274950 ACAATCGTCAAATAATAAGCCGGG 59.725 41.667 2.18 0.00 0.00 5.73
568 569 2.841215 TCGTCAAATAATAAGCCGGGG 58.159 47.619 2.18 0.00 0.00 5.73
569 570 1.877443 CGTCAAATAATAAGCCGGGGG 59.123 52.381 2.18 0.00 0.00 5.40
588 589 2.804697 GGTGCAAACGTACCCAAATT 57.195 45.000 0.00 0.00 33.33 1.82
589 590 3.100658 GGTGCAAACGTACCCAAATTT 57.899 42.857 0.00 0.00 33.33 1.82
590 591 3.054166 GGTGCAAACGTACCCAAATTTC 58.946 45.455 0.00 0.00 33.33 2.17
591 592 3.054166 GTGCAAACGTACCCAAATTTCC 58.946 45.455 0.00 0.00 0.00 3.13
592 593 2.693591 TGCAAACGTACCCAAATTTCCA 59.306 40.909 0.00 0.00 0.00 3.53
593 594 3.132289 TGCAAACGTACCCAAATTTCCAA 59.868 39.130 0.00 0.00 0.00 3.53
594 595 4.120589 GCAAACGTACCCAAATTTCCAAA 58.879 39.130 0.00 0.00 0.00 3.28
595 596 4.571176 GCAAACGTACCCAAATTTCCAAAA 59.429 37.500 0.00 0.00 0.00 2.44
596 597 5.502706 GCAAACGTACCCAAATTTCCAAAAC 60.503 40.000 0.00 0.00 0.00 2.43
597 598 4.325028 ACGTACCCAAATTTCCAAAACC 57.675 40.909 0.00 0.00 0.00 3.27
598 599 3.705072 ACGTACCCAAATTTCCAAAACCA 59.295 39.130 0.00 0.00 0.00 3.67
599 600 4.345547 ACGTACCCAAATTTCCAAAACCAT 59.654 37.500 0.00 0.00 0.00 3.55
600 601 5.163290 ACGTACCCAAATTTCCAAAACCATT 60.163 36.000 0.00 0.00 0.00 3.16
601 602 5.178438 CGTACCCAAATTTCCAAAACCATTG 59.822 40.000 0.00 0.00 0.00 2.82
602 603 5.379706 ACCCAAATTTCCAAAACCATTGA 57.620 34.783 0.00 0.00 0.00 2.57
603 604 5.760131 ACCCAAATTTCCAAAACCATTGAA 58.240 33.333 0.00 0.00 0.00 2.69
604 605 5.592282 ACCCAAATTTCCAAAACCATTGAAC 59.408 36.000 0.00 0.00 0.00 3.18
605 606 5.591877 CCCAAATTTCCAAAACCATTGAACA 59.408 36.000 0.00 0.00 0.00 3.18
606 607 6.459435 CCCAAATTTCCAAAACCATTGAACAC 60.459 38.462 0.00 0.00 0.00 3.32
607 608 6.094603 CCAAATTTCCAAAACCATTGAACACA 59.905 34.615 0.00 0.00 0.00 3.72
608 609 7.201803 CCAAATTTCCAAAACCATTGAACACAT 60.202 33.333 0.00 0.00 0.00 3.21
609 610 7.878547 AATTTCCAAAACCATTGAACACATT 57.121 28.000 0.00 0.00 0.00 2.71
610 611 8.970859 AATTTCCAAAACCATTGAACACATTA 57.029 26.923 0.00 0.00 0.00 1.90
611 612 8.970859 ATTTCCAAAACCATTGAACACATTAA 57.029 26.923 0.00 0.00 0.00 1.40
612 613 8.792830 TTTCCAAAACCATTGAACACATTAAA 57.207 26.923 0.00 0.00 0.00 1.52
613 614 8.792830 TTCCAAAACCATTGAACACATTAAAA 57.207 26.923 0.00 0.00 0.00 1.52
614 615 8.202745 TCCAAAACCATTGAACACATTAAAAC 57.797 30.769 0.00 0.00 0.00 2.43
615 616 7.281100 TCCAAAACCATTGAACACATTAAAACC 59.719 33.333 0.00 0.00 0.00 3.27
616 617 7.281999 CCAAAACCATTGAACACATTAAAACCT 59.718 33.333 0.00 0.00 0.00 3.50
617 618 8.672815 CAAAACCATTGAACACATTAAAACCTT 58.327 29.630 0.00 0.00 0.00 3.50
618 619 8.432110 AAACCATTGAACACATTAAAACCTTC 57.568 30.769 0.00 0.00 0.00 3.46
619 620 6.521162 ACCATTGAACACATTAAAACCTTCC 58.479 36.000 0.00 0.00 0.00 3.46
620 621 5.633182 CCATTGAACACATTAAAACCTTCCG 59.367 40.000 0.00 0.00 0.00 4.30
621 622 5.838531 TTGAACACATTAAAACCTTCCGT 57.161 34.783 0.00 0.00 0.00 4.69
622 623 5.838531 TGAACACATTAAAACCTTCCGTT 57.161 34.783 0.00 0.00 35.70 4.44
623 624 6.210287 TGAACACATTAAAACCTTCCGTTT 57.790 33.333 0.00 0.00 46.92 3.60
624 625 6.267070 TGAACACATTAAAACCTTCCGTTTC 58.733 36.000 0.00 0.00 44.09 2.78
625 626 5.190992 ACACATTAAAACCTTCCGTTTCC 57.809 39.130 0.00 0.00 44.09 3.13
626 627 4.645588 ACACATTAAAACCTTCCGTTTCCA 59.354 37.500 0.00 0.00 44.09 3.53
627 628 4.979815 CACATTAAAACCTTCCGTTTCCAC 59.020 41.667 0.00 0.00 44.09 4.02
628 629 4.038282 ACATTAAAACCTTCCGTTTCCACC 59.962 41.667 0.00 0.00 44.09 4.61
629 630 2.146920 AAAACCTTCCGTTTCCACCA 57.853 45.000 0.00 0.00 44.09 4.17
630 631 2.146920 AAACCTTCCGTTTCCACCAA 57.853 45.000 0.00 0.00 40.86 3.67
631 632 1.395635 AACCTTCCGTTTCCACCAAC 58.604 50.000 0.00 0.00 0.00 3.77
632 633 0.466739 ACCTTCCGTTTCCACCAACC 60.467 55.000 0.00 0.00 0.00 3.77
633 634 0.179001 CCTTCCGTTTCCACCAACCT 60.179 55.000 0.00 0.00 0.00 3.50
634 635 1.687563 CTTCCGTTTCCACCAACCTT 58.312 50.000 0.00 0.00 0.00 3.50
635 636 2.028876 CTTCCGTTTCCACCAACCTTT 58.971 47.619 0.00 0.00 0.00 3.11
636 637 2.146920 TCCGTTTCCACCAACCTTTT 57.853 45.000 0.00 0.00 0.00 2.27
637 638 2.458620 TCCGTTTCCACCAACCTTTTT 58.541 42.857 0.00 0.00 0.00 1.94
638 639 2.166664 TCCGTTTCCACCAACCTTTTTG 59.833 45.455 0.00 0.00 0.00 2.44
639 640 2.166664 CCGTTTCCACCAACCTTTTTGA 59.833 45.455 0.00 0.00 0.00 2.69
640 641 3.368531 CCGTTTCCACCAACCTTTTTGAA 60.369 43.478 0.00 0.00 0.00 2.69
641 642 4.246458 CGTTTCCACCAACCTTTTTGAAA 58.754 39.130 0.00 0.00 0.00 2.69
642 643 4.328712 CGTTTCCACCAACCTTTTTGAAAG 59.671 41.667 0.00 0.00 0.00 2.62
643 644 3.535280 TCCACCAACCTTTTTGAAAGC 57.465 42.857 0.00 0.00 0.00 3.51
644 645 2.169561 TCCACCAACCTTTTTGAAAGCC 59.830 45.455 0.00 0.00 0.00 4.35
645 646 2.200899 CACCAACCTTTTTGAAAGCCG 58.799 47.619 0.00 0.00 0.00 5.52
646 647 2.104170 ACCAACCTTTTTGAAAGCCGA 58.896 42.857 0.00 0.00 0.00 5.54
647 648 2.498078 ACCAACCTTTTTGAAAGCCGAA 59.502 40.909 0.00 0.00 0.00 4.30
648 649 3.133901 ACCAACCTTTTTGAAAGCCGAAT 59.866 39.130 0.00 0.00 0.00 3.34
649 650 4.126437 CCAACCTTTTTGAAAGCCGAATT 58.874 39.130 0.00 0.00 0.00 2.17
650 651 4.574421 CCAACCTTTTTGAAAGCCGAATTT 59.426 37.500 0.00 0.00 0.00 1.82
651 652 5.500825 CAACCTTTTTGAAAGCCGAATTTG 58.499 37.500 0.00 0.00 0.00 2.32
652 653 5.017294 ACCTTTTTGAAAGCCGAATTTGA 57.983 34.783 0.00 0.00 0.00 2.69
653 654 5.423886 ACCTTTTTGAAAGCCGAATTTGAA 58.576 33.333 0.00 0.00 0.00 2.69
654 655 5.293324 ACCTTTTTGAAAGCCGAATTTGAAC 59.707 36.000 0.00 0.00 0.00 3.18
655 656 5.277297 CCTTTTTGAAAGCCGAATTTGAACC 60.277 40.000 0.00 0.00 0.00 3.62
656 657 4.664150 TTTGAAAGCCGAATTTGAACCT 57.336 36.364 0.00 0.00 0.00 3.50
657 658 4.664150 TTGAAAGCCGAATTTGAACCTT 57.336 36.364 0.00 0.00 0.00 3.50
658 659 4.664150 TGAAAGCCGAATTTGAACCTTT 57.336 36.364 0.00 0.60 0.00 3.11
659 660 5.017294 TGAAAGCCGAATTTGAACCTTTT 57.983 34.783 0.00 0.00 0.00 2.27
660 661 5.423886 TGAAAGCCGAATTTGAACCTTTTT 58.576 33.333 0.00 0.00 0.00 1.94
661 662 5.293079 TGAAAGCCGAATTTGAACCTTTTTG 59.707 36.000 0.00 0.00 0.00 2.44
662 663 3.130633 AGCCGAATTTGAACCTTTTTGC 58.869 40.909 0.00 0.00 0.00 3.68
663 664 3.130633 GCCGAATTTGAACCTTTTTGCT 58.869 40.909 0.00 0.00 0.00 3.91
664 665 3.059665 GCCGAATTTGAACCTTTTTGCTG 60.060 43.478 0.00 0.00 0.00 4.41
665 666 4.119136 CCGAATTTGAACCTTTTTGCTGT 58.881 39.130 0.00 0.00 0.00 4.40
666 667 4.025813 CCGAATTTGAACCTTTTTGCTGTG 60.026 41.667 0.00 0.00 0.00 3.66
667 668 4.803088 CGAATTTGAACCTTTTTGCTGTGA 59.197 37.500 0.00 0.00 0.00 3.58
668 669 5.290643 CGAATTTGAACCTTTTTGCTGTGAA 59.709 36.000 0.00 0.00 0.00 3.18
669 670 6.421377 AATTTGAACCTTTTTGCTGTGAAC 57.579 33.333 0.00 0.00 0.00 3.18
670 671 4.799564 TTGAACCTTTTTGCTGTGAACT 57.200 36.364 0.00 0.00 0.00 3.01
671 672 4.370364 TGAACCTTTTTGCTGTGAACTC 57.630 40.909 0.00 0.00 0.00 3.01
672 673 3.761218 TGAACCTTTTTGCTGTGAACTCA 59.239 39.130 0.00 0.00 0.00 3.41
673 674 3.782889 ACCTTTTTGCTGTGAACTCAC 57.217 42.857 2.78 2.78 46.59 3.51
685 686 3.849911 GTGAACTCACATACTAGCAGCA 58.150 45.455 4.96 0.00 45.75 4.41
686 687 3.614616 GTGAACTCACATACTAGCAGCAC 59.385 47.826 4.96 0.00 45.75 4.40
687 688 3.258123 TGAACTCACATACTAGCAGCACA 59.742 43.478 0.00 0.00 0.00 4.57
688 689 4.081476 TGAACTCACATACTAGCAGCACAT 60.081 41.667 0.00 0.00 0.00 3.21
689 690 4.478206 ACTCACATACTAGCAGCACATT 57.522 40.909 0.00 0.00 0.00 2.71
690 691 4.437239 ACTCACATACTAGCAGCACATTC 58.563 43.478 0.00 0.00 0.00 2.67
691 692 4.161189 ACTCACATACTAGCAGCACATTCT 59.839 41.667 0.00 0.00 0.00 2.40
692 693 5.089970 TCACATACTAGCAGCACATTCTT 57.910 39.130 0.00 0.00 0.00 2.52
693 694 5.111989 TCACATACTAGCAGCACATTCTTC 58.888 41.667 0.00 0.00 0.00 2.87
694 695 4.272018 CACATACTAGCAGCACATTCTTCC 59.728 45.833 0.00 0.00 0.00 3.46
695 696 2.409948 ACTAGCAGCACATTCTTCCC 57.590 50.000 0.00 0.00 0.00 3.97
696 697 1.912043 ACTAGCAGCACATTCTTCCCT 59.088 47.619 0.00 0.00 0.00 4.20
697 698 2.307098 ACTAGCAGCACATTCTTCCCTT 59.693 45.455 0.00 0.00 0.00 3.95
698 699 3.519510 ACTAGCAGCACATTCTTCCCTTA 59.480 43.478 0.00 0.00 0.00 2.69
699 700 3.439857 AGCAGCACATTCTTCCCTTAA 57.560 42.857 0.00 0.00 0.00 1.85
700 701 3.766545 AGCAGCACATTCTTCCCTTAAA 58.233 40.909 0.00 0.00 0.00 1.52
701 702 4.347607 AGCAGCACATTCTTCCCTTAAAT 58.652 39.130 0.00 0.00 0.00 1.40
702 703 4.400567 AGCAGCACATTCTTCCCTTAAATC 59.599 41.667 0.00 0.00 0.00 2.17
703 704 4.400567 GCAGCACATTCTTCCCTTAAATCT 59.599 41.667 0.00 0.00 0.00 2.40
704 705 5.449725 GCAGCACATTCTTCCCTTAAATCTC 60.450 44.000 0.00 0.00 0.00 2.75
705 706 4.878397 AGCACATTCTTCCCTTAAATCTCG 59.122 41.667 0.00 0.00 0.00 4.04
706 707 4.636206 GCACATTCTTCCCTTAAATCTCGT 59.364 41.667 0.00 0.00 0.00 4.18
707 708 5.123979 GCACATTCTTCCCTTAAATCTCGTT 59.876 40.000 0.00 0.00 0.00 3.85
708 709 6.315393 GCACATTCTTCCCTTAAATCTCGTTA 59.685 38.462 0.00 0.00 0.00 3.18
709 710 7.148306 GCACATTCTTCCCTTAAATCTCGTTAA 60.148 37.037 0.00 0.00 0.00 2.01
710 711 8.893727 CACATTCTTCCCTTAAATCTCGTTAAT 58.106 33.333 0.00 0.00 0.00 1.40
711 712 9.462606 ACATTCTTCCCTTAAATCTCGTTAATT 57.537 29.630 0.00 0.00 0.00 1.40
712 713 9.937175 CATTCTTCCCTTAAATCTCGTTAATTC 57.063 33.333 0.00 0.00 0.00 2.17
713 714 9.907229 ATTCTTCCCTTAAATCTCGTTAATTCT 57.093 29.630 0.00 0.00 0.00 2.40
714 715 8.718102 TCTTCCCTTAAATCTCGTTAATTCTG 57.282 34.615 0.00 0.00 0.00 3.02
715 716 6.920569 TCCCTTAAATCTCGTTAATTCTGC 57.079 37.500 0.00 0.00 0.00 4.26
716 717 5.820947 TCCCTTAAATCTCGTTAATTCTGCC 59.179 40.000 0.00 0.00 0.00 4.85
717 718 5.588648 CCCTTAAATCTCGTTAATTCTGCCA 59.411 40.000 0.00 0.00 0.00 4.92
718 719 6.458342 CCCTTAAATCTCGTTAATTCTGCCAC 60.458 42.308 0.00 0.00 0.00 5.01
737 738 4.747810 CCACTAAACCCAGCATCAAAATC 58.252 43.478 0.00 0.00 0.00 2.17
742 743 6.667414 ACTAAACCCAGCATCAAAATCCATTA 59.333 34.615 0.00 0.00 0.00 1.90
758 759 5.127693 TCCATTACCAAAACCATTGAACG 57.872 39.130 0.00 0.00 0.00 3.95
863 873 2.417257 AACCCGACGCGCCTGTATA 61.417 57.895 5.73 0.00 0.00 1.47
1010 1028 1.269413 CCCGCCCCGCTTATATATACG 60.269 57.143 0.00 0.00 0.00 3.06
1030 1048 1.017701 CGACGGGCCTTTACCAGAAC 61.018 60.000 0.84 0.00 0.00 3.01
1119 1143 0.172127 TGTGAGAGTGCGATCTGCTC 59.828 55.000 10.16 7.14 46.63 4.26
1208 1232 2.689034 AGTAGCCTGGTCCCTGCC 60.689 66.667 0.00 0.00 0.00 4.85
1604 1643 0.109412 CGGACCAGTACGTGTTCTCC 60.109 60.000 0.00 0.00 30.94 3.71
1708 1765 4.426112 CTCGCACTCGCAGCCTCA 62.426 66.667 0.00 0.00 38.40 3.86
1754 1883 4.471726 CCCGGGAGAACGACGACG 62.472 72.222 18.48 5.58 45.75 5.12
1755 1884 3.425713 CCGGGAGAACGACGACGA 61.426 66.667 15.32 0.00 42.66 4.20
1756 1885 2.202272 CGGGAGAACGACGACGAC 60.202 66.667 15.32 7.63 42.66 4.34
1757 1886 2.202272 GGGAGAACGACGACGACG 60.202 66.667 17.60 17.60 42.66 5.12
1758 1887 2.671177 GGGAGAACGACGACGACGA 61.671 63.158 25.15 0.00 42.66 4.20
1759 1888 1.508746 GGAGAACGACGACGACGAC 60.509 63.158 25.15 17.19 42.66 4.34
1794 1923 4.170723 CGAGGTCGCTCAAGTTCC 57.829 61.111 0.00 0.00 0.00 3.62
1795 1924 1.587054 CGAGGTCGCTCAAGTTCCT 59.413 57.895 0.00 0.00 0.00 3.36
1796 1925 0.456995 CGAGGTCGCTCAAGTTCCTC 60.457 60.000 0.00 0.00 40.62 3.71
1797 1926 0.108567 GAGGTCGCTCAAGTTCCTCC 60.109 60.000 0.00 0.00 38.81 4.30
1798 1927 0.543174 AGGTCGCTCAAGTTCCTCCT 60.543 55.000 0.00 0.00 0.00 3.69
1799 1928 0.108567 GGTCGCTCAAGTTCCTCCTC 60.109 60.000 0.00 0.00 0.00 3.71
1800 1929 0.108567 GTCGCTCAAGTTCCTCCTCC 60.109 60.000 0.00 0.00 0.00 4.30
1801 1930 0.541998 TCGCTCAAGTTCCTCCTCCA 60.542 55.000 0.00 0.00 0.00 3.86
1802 1931 0.108424 CGCTCAAGTTCCTCCTCCAG 60.108 60.000 0.00 0.00 0.00 3.86
1803 1932 0.392327 GCTCAAGTTCCTCCTCCAGC 60.392 60.000 0.00 0.00 0.00 4.85
1804 1933 0.108424 CTCAAGTTCCTCCTCCAGCG 60.108 60.000 0.00 0.00 0.00 5.18
1805 1934 1.078848 CAAGTTCCTCCTCCAGCGG 60.079 63.158 0.00 0.00 0.00 5.52
1806 1935 1.229209 AAGTTCCTCCTCCAGCGGA 60.229 57.895 0.00 0.00 0.00 5.54
1931 2060 1.431440 CTTCTCGCACTCCTCCTCG 59.569 63.158 0.00 0.00 0.00 4.63
1952 2081 4.458829 TCCTCCTCCGGCCACGAT 62.459 66.667 2.24 0.00 44.60 3.73
2174 2314 1.450312 GATCGTGTTCCAGCAGGGG 60.450 63.158 0.00 0.00 37.22 4.79
2580 2735 1.790481 GCATAGCGCTTTGTTCGGTTC 60.790 52.381 25.42 6.67 38.65 3.62
2743 2934 5.568685 TCACAAGATGTTTTTCCAAACGA 57.431 34.783 0.00 0.00 44.76 3.85
2807 3036 7.383029 TCAACTTGATTCAAATGAGCAAATGAC 59.617 33.333 9.37 0.00 0.00 3.06
2808 3037 6.751157 ACTTGATTCAAATGAGCAAATGACA 58.249 32.000 0.01 0.00 0.00 3.58
2819 3048 3.544684 AGCAAATGACACACACTCTTGA 58.455 40.909 0.00 0.00 0.00 3.02
2820 3049 4.139786 AGCAAATGACACACACTCTTGAT 58.860 39.130 0.00 0.00 0.00 2.57
2821 3050 4.581824 AGCAAATGACACACACTCTTGATT 59.418 37.500 0.00 0.00 0.00 2.57
2858 3100 2.443146 GATCGATCGAGCTGGCATG 58.557 57.895 25.17 0.00 0.00 4.06
2881 3123 3.182972 GCACAGTTACAAATGCAAGCAAG 59.817 43.478 0.00 0.00 38.00 4.01
2918 3160 1.899437 CTAGGGCAGAGCAACGGGAA 61.899 60.000 0.00 0.00 0.00 3.97
2990 3232 2.366167 AGGAGGCCAGCCACTAGG 60.366 66.667 16.09 0.00 38.92 3.02
2992 3234 2.736826 GGAGGCCAGCCACTAGGAC 61.737 68.421 12.03 0.00 38.92 3.85
2993 3235 2.452114 AGGCCAGCCACTAGGACT 59.548 61.111 12.03 0.00 38.86 3.85
2994 3236 0.397254 GAGGCCAGCCACTAGGACTA 60.397 60.000 12.03 0.00 45.41 2.59
2995 3237 0.397816 AGGCCAGCCACTAGGACTAG 60.398 60.000 12.03 4.86 42.96 2.57
3036 3279 0.609957 CAGCAGAGCCCATTTCACCA 60.610 55.000 0.00 0.00 0.00 4.17
3141 3384 4.409218 CACTGTGCCGCATGTGCC 62.409 66.667 13.86 0.00 37.91 5.01
3168 3411 3.495894 GTGAATATTCGCGCAGAAGAG 57.504 47.619 12.97 0.00 42.92 2.85
3169 3412 3.116300 GTGAATATTCGCGCAGAAGAGA 58.884 45.455 12.97 2.74 42.92 3.10
3184 3427 6.538444 GCAGAAGAGAAAGAAAATTACTCCG 58.462 40.000 0.00 0.00 0.00 4.63
3213 3457 2.864343 CGCCCCAGAACTAAAATAGACG 59.136 50.000 0.00 0.00 0.00 4.18
3234 3478 2.281484 TGACACCAAAGCCTCCGC 60.281 61.111 0.00 0.00 0.00 5.54
3414 3683 3.630298 TAAATTCCGGCCGCCTGCA 62.630 57.895 22.85 0.00 43.89 4.41
3558 3860 0.456312 GACGAGGACGATGACACCAC 60.456 60.000 0.00 0.00 42.66 4.16
3559 3861 1.514228 CGAGGACGATGACACCACG 60.514 63.158 0.00 0.00 42.66 4.94
3560 3862 1.805945 GAGGACGATGACACCACGC 60.806 63.158 0.00 0.00 0.00 5.34
3561 3863 2.048597 GGACGATGACACCACGCA 60.049 61.111 0.00 0.00 0.00 5.24
3625 3934 4.426112 CAGAGCTGCCTCGACGCA 62.426 66.667 8.80 8.80 43.05 5.24
3626 3935 3.456365 AGAGCTGCCTCGACGCAT 61.456 61.111 9.55 0.00 43.05 4.73
3668 3988 2.583520 GTCTCTCCTGGCTGGCTG 59.416 66.667 5.39 1.43 35.26 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 9.698309 TCGTGGCAAAATCAAAAGAATAATAAA 57.302 25.926 0.00 0.00 0.00 1.40
40 41 9.134734 GTCGTGGCAAAATCAAAAGAATAATAA 57.865 29.630 0.00 0.00 0.00 1.40
41 42 8.300286 TGTCGTGGCAAAATCAAAAGAATAATA 58.700 29.630 0.00 0.00 0.00 0.98
42 43 7.151308 TGTCGTGGCAAAATCAAAAGAATAAT 58.849 30.769 0.00 0.00 0.00 1.28
43 44 6.507900 TGTCGTGGCAAAATCAAAAGAATAA 58.492 32.000 0.00 0.00 0.00 1.40
44 45 6.078202 TGTCGTGGCAAAATCAAAAGAATA 57.922 33.333 0.00 0.00 0.00 1.75
45 46 4.942852 TGTCGTGGCAAAATCAAAAGAAT 58.057 34.783 0.00 0.00 0.00 2.40
46 47 4.377839 TGTCGTGGCAAAATCAAAAGAA 57.622 36.364 0.00 0.00 0.00 2.52
47 48 4.142271 ACTTGTCGTGGCAAAATCAAAAGA 60.142 37.500 0.00 0.00 0.00 2.52
48 49 4.111916 ACTTGTCGTGGCAAAATCAAAAG 58.888 39.130 0.00 0.00 0.00 2.27
49 50 4.116747 ACTTGTCGTGGCAAAATCAAAA 57.883 36.364 0.00 0.00 0.00 2.44
50 51 3.791973 ACTTGTCGTGGCAAAATCAAA 57.208 38.095 0.00 0.00 0.00 2.69
51 52 3.791973 AACTTGTCGTGGCAAAATCAA 57.208 38.095 0.00 0.00 0.00 2.57
52 53 3.791973 AAACTTGTCGTGGCAAAATCA 57.208 38.095 0.00 0.00 0.00 2.57
53 54 7.462724 GCATATTAAACTTGTCGTGGCAAAATC 60.463 37.037 0.00 0.00 0.00 2.17
54 55 6.310224 GCATATTAAACTTGTCGTGGCAAAAT 59.690 34.615 0.00 0.00 0.00 1.82
55 56 5.631512 GCATATTAAACTTGTCGTGGCAAAA 59.368 36.000 0.00 0.00 0.00 2.44
56 57 5.157781 GCATATTAAACTTGTCGTGGCAAA 58.842 37.500 0.00 0.00 0.00 3.68
57 58 4.216472 TGCATATTAAACTTGTCGTGGCAA 59.784 37.500 0.00 0.00 0.00 4.52
58 59 3.753797 TGCATATTAAACTTGTCGTGGCA 59.246 39.130 0.00 0.00 0.00 4.92
59 60 4.349663 TGCATATTAAACTTGTCGTGGC 57.650 40.909 0.00 0.00 0.00 5.01
60 61 6.806249 ACAAATGCATATTAAACTTGTCGTGG 59.194 34.615 0.00 0.00 0.00 4.94
61 62 7.536964 TGACAAATGCATATTAAACTTGTCGTG 59.463 33.333 23.16 0.00 34.24 4.35
62 63 7.589395 TGACAAATGCATATTAAACTTGTCGT 58.411 30.769 23.16 1.65 34.24 4.34
63 64 8.525876 CATGACAAATGCATATTAAACTTGTCG 58.474 33.333 23.16 12.68 34.24 4.35
64 65 8.810427 CCATGACAAATGCATATTAAACTTGTC 58.190 33.333 22.51 22.51 33.07 3.18
65 66 7.278424 GCCATGACAAATGCATATTAAACTTGT 59.722 33.333 9.77 9.77 0.00 3.16
66 67 7.278203 TGCCATGACAAATGCATATTAAACTTG 59.722 33.333 0.00 1.12 0.00 3.16
67 68 7.329499 TGCCATGACAAATGCATATTAAACTT 58.671 30.769 0.00 0.00 0.00 2.66
68 69 6.876155 TGCCATGACAAATGCATATTAAACT 58.124 32.000 0.00 0.00 0.00 2.66
69 70 7.718272 ATGCCATGACAAATGCATATTAAAC 57.282 32.000 0.00 0.00 42.30 2.01
70 71 8.734218 AAATGCCATGACAAATGCATATTAAA 57.266 26.923 0.00 0.00 43.23 1.52
71 72 8.734218 AAAATGCCATGACAAATGCATATTAA 57.266 26.923 0.00 0.00 43.23 1.40
72 73 8.734218 AAAAATGCCATGACAAATGCATATTA 57.266 26.923 0.00 0.00 43.23 0.98
73 74 7.633193 AAAAATGCCATGACAAATGCATATT 57.367 28.000 0.00 0.00 43.23 1.28
101 102 8.830580 TGGCAAAATCAAACGAATAATGAAAAA 58.169 25.926 0.00 0.00 0.00 1.94
102 103 8.279103 GTGGCAAAATCAAACGAATAATGAAAA 58.721 29.630 0.00 0.00 0.00 2.29
103 104 7.358765 CGTGGCAAAATCAAACGAATAATGAAA 60.359 33.333 0.00 0.00 36.38 2.69
104 105 6.088749 CGTGGCAAAATCAAACGAATAATGAA 59.911 34.615 0.00 0.00 36.38 2.57
105 106 5.570973 CGTGGCAAAATCAAACGAATAATGA 59.429 36.000 0.00 0.00 36.38 2.57
106 107 5.570973 TCGTGGCAAAATCAAACGAATAATG 59.429 36.000 0.00 0.00 40.03 1.90
107 108 5.704888 TCGTGGCAAAATCAAACGAATAAT 58.295 33.333 0.00 0.00 40.03 1.28
108 109 5.109662 TCGTGGCAAAATCAAACGAATAA 57.890 34.783 0.00 0.00 40.03 1.40
109 110 4.750952 TCGTGGCAAAATCAAACGAATA 57.249 36.364 0.00 0.00 40.03 1.75
110 111 3.634568 TCGTGGCAAAATCAAACGAAT 57.365 38.095 0.00 0.00 40.03 3.34
111 112 3.634568 ATCGTGGCAAAATCAAACGAA 57.365 38.095 0.00 0.00 45.26 3.85
112 113 4.214545 ACTTATCGTGGCAAAATCAAACGA 59.785 37.500 0.00 0.00 46.06 3.85
113 114 4.472286 ACTTATCGTGGCAAAATCAAACG 58.528 39.130 0.00 0.00 35.64 3.60
114 115 6.763303 AAACTTATCGTGGCAAAATCAAAC 57.237 33.333 0.00 0.00 0.00 2.93
116 117 9.781834 CTATTAAACTTATCGTGGCAAAATCAA 57.218 29.630 0.00 0.00 0.00 2.57
117 118 8.402472 CCTATTAAACTTATCGTGGCAAAATCA 58.598 33.333 0.00 0.00 0.00 2.57
118 119 7.378728 GCCTATTAAACTTATCGTGGCAAAATC 59.621 37.037 0.00 0.00 37.91 2.17
119 120 7.147983 TGCCTATTAAACTTATCGTGGCAAAAT 60.148 33.333 0.00 0.00 43.78 1.82
120 121 6.151312 TGCCTATTAAACTTATCGTGGCAAAA 59.849 34.615 0.00 0.00 43.78 2.44
121 122 5.648526 TGCCTATTAAACTTATCGTGGCAAA 59.351 36.000 0.00 0.00 43.78 3.68
122 123 5.186942 TGCCTATTAAACTTATCGTGGCAA 58.813 37.500 0.00 0.00 43.78 4.52
123 124 4.771903 TGCCTATTAAACTTATCGTGGCA 58.228 39.130 0.00 0.00 44.41 4.92
124 125 5.701290 AGATGCCTATTAAACTTATCGTGGC 59.299 40.000 0.00 0.00 38.42 5.01
125 126 6.347725 GCAGATGCCTATTAAACTTATCGTGG 60.348 42.308 0.00 0.00 34.31 4.94
126 127 6.593978 GCAGATGCCTATTAAACTTATCGTG 58.406 40.000 0.00 0.00 34.31 4.35
127 128 6.787085 GCAGATGCCTATTAAACTTATCGT 57.213 37.500 0.00 0.00 34.31 3.73
193 194 2.766970 TAAACTTGTCGTGGCAAAGC 57.233 45.000 0.00 0.00 0.00 3.51
194 195 4.854399 TCATTAAACTTGTCGTGGCAAAG 58.146 39.130 0.00 0.00 0.00 2.77
195 196 4.902443 TCATTAAACTTGTCGTGGCAAA 57.098 36.364 0.00 0.00 0.00 3.68
196 197 4.793071 CATCATTAAACTTGTCGTGGCAA 58.207 39.130 0.00 0.00 0.00 4.52
197 198 3.365868 GCATCATTAAACTTGTCGTGGCA 60.366 43.478 0.00 0.00 0.00 4.92
198 199 3.171277 GCATCATTAAACTTGTCGTGGC 58.829 45.455 0.00 0.00 0.00 5.01
199 200 4.418013 TGCATCATTAAACTTGTCGTGG 57.582 40.909 0.00 0.00 0.00 4.94
200 201 6.932901 AAATGCATCATTAAACTTGTCGTG 57.067 33.333 0.00 0.00 32.43 4.35
201 202 9.638239 AAATAAATGCATCATTAAACTTGTCGT 57.362 25.926 0.00 0.00 32.43 4.34
214 215 9.006839 TGGCAAAAACATAAAATAAATGCATCA 57.993 25.926 0.00 0.00 33.14 3.07
216 217 9.790389 CATGGCAAAAACATAAAATAAATGCAT 57.210 25.926 0.00 0.00 33.14 3.96
217 218 9.006839 TCATGGCAAAAACATAAAATAAATGCA 57.993 25.926 0.00 0.00 33.14 3.96
218 219 9.276397 GTCATGGCAAAAACATAAAATAAATGC 57.724 29.630 0.00 0.00 0.00 3.56
222 223 9.499479 ACATGTCATGGCAAAAACATAAAATAA 57.501 25.926 17.08 0.00 31.40 1.40
223 224 9.499479 AACATGTCATGGCAAAAACATAAAATA 57.501 25.926 17.08 0.00 31.40 1.40
224 225 7.982761 ACATGTCATGGCAAAAACATAAAAT 57.017 28.000 17.08 0.00 31.40 1.82
225 226 7.798596 AACATGTCATGGCAAAAACATAAAA 57.201 28.000 17.08 0.00 31.40 1.52
226 227 7.798596 AAACATGTCATGGCAAAAACATAAA 57.201 28.000 17.08 0.00 31.40 1.40
227 228 9.499479 AATAAACATGTCATGGCAAAAACATAA 57.501 25.926 17.08 0.00 31.40 1.90
229 230 7.982761 AATAAACATGTCATGGCAAAAACAT 57.017 28.000 17.08 0.00 32.73 2.71
230 231 9.499479 AATAATAAACATGTCATGGCAAAAACA 57.501 25.926 17.08 0.00 33.60 2.83
231 232 9.757859 CAATAATAAACATGTCATGGCAAAAAC 57.242 29.630 17.08 0.00 33.60 2.43
232 233 9.716531 TCAATAATAAACATGTCATGGCAAAAA 57.283 25.926 17.08 0.00 33.60 1.94
233 234 9.368674 CTCAATAATAAACATGTCATGGCAAAA 57.631 29.630 17.08 0.00 33.60 2.44
234 235 7.980662 CCTCAATAATAAACATGTCATGGCAAA 59.019 33.333 17.08 0.40 33.60 3.68
235 236 7.417683 CCCTCAATAATAAACATGTCATGGCAA 60.418 37.037 17.08 2.13 33.60 4.52
236 237 6.040729 CCCTCAATAATAAACATGTCATGGCA 59.959 38.462 17.08 0.60 33.60 4.92
237 238 6.449698 CCCTCAATAATAAACATGTCATGGC 58.550 40.000 17.08 0.00 33.60 4.40
238 239 6.040729 TGCCCTCAATAATAAACATGTCATGG 59.959 38.462 17.08 0.00 33.60 3.66
239 240 7.041635 TGCCCTCAATAATAAACATGTCATG 57.958 36.000 11.41 11.41 0.00 3.07
240 241 7.288389 ACATGCCCTCAATAATAAACATGTCAT 59.712 33.333 0.00 0.00 42.18 3.06
241 242 6.606796 ACATGCCCTCAATAATAAACATGTCA 59.393 34.615 0.00 0.00 42.18 3.58
242 243 7.042797 ACATGCCCTCAATAATAAACATGTC 57.957 36.000 0.00 0.00 42.18 3.06
243 244 6.606796 TGACATGCCCTCAATAATAAACATGT 59.393 34.615 5.08 5.08 46.85 3.21
244 245 7.041635 TGACATGCCCTCAATAATAAACATG 57.958 36.000 0.00 0.00 39.55 3.21
245 246 7.844493 ATGACATGCCCTCAATAATAAACAT 57.156 32.000 0.00 0.00 0.00 2.71
246 247 7.658525 AATGACATGCCCTCAATAATAAACA 57.341 32.000 0.00 0.00 0.00 2.83
247 248 8.947055 AAAATGACATGCCCTCAATAATAAAC 57.053 30.769 0.00 0.00 0.00 2.01
251 252 8.370182 GGATAAAAATGACATGCCCTCAATAAT 58.630 33.333 0.00 0.00 0.00 1.28
252 253 7.564660 AGGATAAAAATGACATGCCCTCAATAA 59.435 33.333 0.00 0.00 0.00 1.40
253 254 7.068702 AGGATAAAAATGACATGCCCTCAATA 58.931 34.615 0.00 0.00 0.00 1.90
254 255 5.901276 AGGATAAAAATGACATGCCCTCAAT 59.099 36.000 0.00 0.00 0.00 2.57
255 256 5.271598 AGGATAAAAATGACATGCCCTCAA 58.728 37.500 0.00 0.00 0.00 3.02
256 257 4.870636 AGGATAAAAATGACATGCCCTCA 58.129 39.130 0.00 0.00 0.00 3.86
257 258 5.859205 AAGGATAAAAATGACATGCCCTC 57.141 39.130 0.00 0.00 0.00 4.30
258 259 6.324770 CCTTAAGGATAAAAATGACATGCCCT 59.675 38.462 17.21 0.00 37.39 5.19
259 260 6.515832 CCTTAAGGATAAAAATGACATGCCC 58.484 40.000 17.21 0.00 37.39 5.36
260 261 5.985530 GCCTTAAGGATAAAAATGACATGCC 59.014 40.000 26.21 0.00 37.39 4.40
261 262 5.687285 CGCCTTAAGGATAAAAATGACATGC 59.313 40.000 26.21 2.56 37.39 4.06
262 263 6.692681 CACGCCTTAAGGATAAAAATGACATG 59.307 38.462 26.21 0.00 37.39 3.21
263 264 6.377146 ACACGCCTTAAGGATAAAAATGACAT 59.623 34.615 26.21 0.00 37.39 3.06
264 265 5.708230 ACACGCCTTAAGGATAAAAATGACA 59.292 36.000 26.21 0.00 37.39 3.58
265 266 6.190954 ACACGCCTTAAGGATAAAAATGAC 57.809 37.500 26.21 2.08 37.39 3.06
266 267 5.355910 GGACACGCCTTAAGGATAAAAATGA 59.644 40.000 26.21 0.00 37.39 2.57
267 268 5.578776 GGACACGCCTTAAGGATAAAAATG 58.421 41.667 26.21 12.73 37.39 2.32
268 269 5.830000 GGACACGCCTTAAGGATAAAAAT 57.170 39.130 26.21 2.80 37.39 1.82
282 283 4.612943 TCAAACAATAAAAAGGACACGCC 58.387 39.130 0.00 0.00 0.00 5.68
283 284 5.516090 TCTCAAACAATAAAAAGGACACGC 58.484 37.500 0.00 0.00 0.00 5.34
284 285 5.625311 GCTCTCAAACAATAAAAAGGACACG 59.375 40.000 0.00 0.00 0.00 4.49
285 286 6.503524 TGCTCTCAAACAATAAAAAGGACAC 58.496 36.000 0.00 0.00 0.00 3.67
286 287 6.707440 TGCTCTCAAACAATAAAAAGGACA 57.293 33.333 0.00 0.00 0.00 4.02
287 288 6.587608 CCATGCTCTCAAACAATAAAAAGGAC 59.412 38.462 0.00 0.00 0.00 3.85
288 289 6.493115 TCCATGCTCTCAAACAATAAAAAGGA 59.507 34.615 0.00 0.00 0.00 3.36
289 290 6.690530 TCCATGCTCTCAAACAATAAAAAGG 58.309 36.000 0.00 0.00 0.00 3.11
290 291 8.592105 TTTCCATGCTCTCAAACAATAAAAAG 57.408 30.769 0.00 0.00 0.00 2.27
291 292 9.558396 AATTTCCATGCTCTCAAACAATAAAAA 57.442 25.926 0.00 0.00 0.00 1.94
292 293 9.558396 AAATTTCCATGCTCTCAAACAATAAAA 57.442 25.926 0.00 0.00 0.00 1.52
293 294 9.558396 AAAATTTCCATGCTCTCAAACAATAAA 57.442 25.926 0.00 0.00 0.00 1.40
294 295 9.558396 AAAAATTTCCATGCTCTCAAACAATAA 57.442 25.926 0.00 0.00 0.00 1.40
296 297 9.558396 TTAAAAATTTCCATGCTCTCAAACAAT 57.442 25.926 0.00 0.00 0.00 2.71
297 298 8.954950 TTAAAAATTTCCATGCTCTCAAACAA 57.045 26.923 0.00 0.00 0.00 2.83
298 299 9.206870 GATTAAAAATTTCCATGCTCTCAAACA 57.793 29.630 0.00 0.00 0.00 2.83
299 300 9.428097 AGATTAAAAATTTCCATGCTCTCAAAC 57.572 29.630 0.00 0.00 0.00 2.93
324 325 9.846248 GCCAATAAGAAAAATACCATGCTATAG 57.154 33.333 0.00 0.00 0.00 1.31
325 326 9.586732 AGCCAATAAGAAAAATACCATGCTATA 57.413 29.630 0.00 0.00 0.00 1.31
326 327 8.482852 AGCCAATAAGAAAAATACCATGCTAT 57.517 30.769 0.00 0.00 0.00 2.97
327 328 7.896383 AGCCAATAAGAAAAATACCATGCTA 57.104 32.000 0.00 0.00 0.00 3.49
328 329 6.796785 AGCCAATAAGAAAAATACCATGCT 57.203 33.333 0.00 0.00 0.00 3.79
329 330 7.010460 GTCAAGCCAATAAGAAAAATACCATGC 59.990 37.037 0.00 0.00 0.00 4.06
330 331 8.034215 TGTCAAGCCAATAAGAAAAATACCATG 58.966 33.333 0.00 0.00 0.00 3.66
331 332 8.034804 GTGTCAAGCCAATAAGAAAAATACCAT 58.965 33.333 0.00 0.00 0.00 3.55
332 333 7.375053 GTGTCAAGCCAATAAGAAAAATACCA 58.625 34.615 0.00 0.00 0.00 3.25
333 334 6.811665 GGTGTCAAGCCAATAAGAAAAATACC 59.188 38.462 0.00 0.00 0.00 2.73
334 335 7.602753 AGGTGTCAAGCCAATAAGAAAAATAC 58.397 34.615 0.00 0.00 0.00 1.89
335 336 7.775053 AGGTGTCAAGCCAATAAGAAAAATA 57.225 32.000 0.00 0.00 0.00 1.40
336 337 6.670695 AGGTGTCAAGCCAATAAGAAAAAT 57.329 33.333 0.00 0.00 0.00 1.82
337 338 6.478512 AAGGTGTCAAGCCAATAAGAAAAA 57.521 33.333 0.00 0.00 0.00 1.94
338 339 6.478512 AAAGGTGTCAAGCCAATAAGAAAA 57.521 33.333 0.00 0.00 0.00 2.29
339 340 6.478512 AAAAGGTGTCAAGCCAATAAGAAA 57.521 33.333 0.00 0.00 0.00 2.52
340 341 7.775053 ATAAAAGGTGTCAAGCCAATAAGAA 57.225 32.000 0.00 0.00 0.00 2.52
341 342 7.775053 AATAAAAGGTGTCAAGCCAATAAGA 57.225 32.000 0.00 0.00 0.00 2.10
342 343 8.831715 AAAATAAAAGGTGTCAAGCCAATAAG 57.168 30.769 0.00 0.00 0.00 1.73
343 344 9.050601 CAAAAATAAAAGGTGTCAAGCCAATAA 57.949 29.630 0.00 0.00 0.00 1.40
344 345 8.424918 TCAAAAATAAAAGGTGTCAAGCCAATA 58.575 29.630 0.00 0.00 0.00 1.90
345 346 7.278875 TCAAAAATAAAAGGTGTCAAGCCAAT 58.721 30.769 0.00 0.00 0.00 3.16
346 347 6.644347 TCAAAAATAAAAGGTGTCAAGCCAA 58.356 32.000 0.00 0.00 0.00 4.52
347 348 6.227298 TCAAAAATAAAAGGTGTCAAGCCA 57.773 33.333 0.00 0.00 0.00 4.75
348 349 7.546778 TTTCAAAAATAAAAGGTGTCAAGCC 57.453 32.000 0.00 0.00 0.00 4.35
492 493 9.805966 GGCGGAATTAACAAAATTTAAGAAAAG 57.194 29.630 0.00 0.00 0.00 2.27
493 494 9.326413 TGGCGGAATTAACAAAATTTAAGAAAA 57.674 25.926 0.00 0.00 0.00 2.29
494 495 8.888579 TGGCGGAATTAACAAAATTTAAGAAA 57.111 26.923 0.00 0.00 0.00 2.52
495 496 8.361139 TCTGGCGGAATTAACAAAATTTAAGAA 58.639 29.630 0.00 0.00 0.00 2.52
496 497 7.887381 TCTGGCGGAATTAACAAAATTTAAGA 58.113 30.769 0.00 0.00 0.00 2.10
497 498 8.702163 ATCTGGCGGAATTAACAAAATTTAAG 57.298 30.769 0.00 0.00 0.00 1.85
498 499 9.575783 GTATCTGGCGGAATTAACAAAATTTAA 57.424 29.630 0.00 0.00 0.00 1.52
499 500 8.740906 TGTATCTGGCGGAATTAACAAAATTTA 58.259 29.630 0.00 0.00 0.00 1.40
500 501 7.607250 TGTATCTGGCGGAATTAACAAAATTT 58.393 30.769 0.00 0.00 0.00 1.82
501 502 7.122055 TCTGTATCTGGCGGAATTAACAAAATT 59.878 33.333 0.00 0.00 0.00 1.82
502 503 6.601613 TCTGTATCTGGCGGAATTAACAAAAT 59.398 34.615 0.00 0.00 0.00 1.82
503 504 5.941058 TCTGTATCTGGCGGAATTAACAAAA 59.059 36.000 0.00 0.00 0.00 2.44
504 505 5.492895 TCTGTATCTGGCGGAATTAACAAA 58.507 37.500 0.00 0.00 0.00 2.83
505 506 5.092554 TCTGTATCTGGCGGAATTAACAA 57.907 39.130 0.00 0.00 0.00 2.83
506 507 4.746535 TCTGTATCTGGCGGAATTAACA 57.253 40.909 0.00 2.23 0.00 2.41
507 508 5.179555 GGAATCTGTATCTGGCGGAATTAAC 59.820 44.000 0.00 0.00 0.00 2.01
508 509 5.071788 AGGAATCTGTATCTGGCGGAATTAA 59.928 40.000 0.00 0.00 0.00 1.40
509 510 4.593206 AGGAATCTGTATCTGGCGGAATTA 59.407 41.667 0.00 0.00 0.00 1.40
510 511 3.392616 AGGAATCTGTATCTGGCGGAATT 59.607 43.478 0.00 0.00 0.00 2.17
511 512 2.975489 AGGAATCTGTATCTGGCGGAAT 59.025 45.455 0.00 0.00 0.00 3.01
512 513 2.365617 GAGGAATCTGTATCTGGCGGAA 59.634 50.000 0.00 0.00 0.00 4.30
513 514 1.964223 GAGGAATCTGTATCTGGCGGA 59.036 52.381 0.00 0.00 0.00 5.54
514 515 1.967066 AGAGGAATCTGTATCTGGCGG 59.033 52.381 0.00 0.00 0.00 6.13
515 516 3.742433 AAGAGGAATCTGTATCTGGCG 57.258 47.619 0.00 0.00 0.00 5.69
516 517 5.028549 TGAAAGAGGAATCTGTATCTGGC 57.971 43.478 0.00 0.00 0.00 4.85
517 518 5.526846 GCTTGAAAGAGGAATCTGTATCTGG 59.473 44.000 0.00 0.00 0.00 3.86
518 519 5.526846 GGCTTGAAAGAGGAATCTGTATCTG 59.473 44.000 0.00 0.00 0.00 2.90
519 520 5.397334 GGGCTTGAAAGAGGAATCTGTATCT 60.397 44.000 0.00 0.00 0.00 1.98
520 521 4.819088 GGGCTTGAAAGAGGAATCTGTATC 59.181 45.833 0.00 0.00 0.00 2.24
521 522 4.228210 TGGGCTTGAAAGAGGAATCTGTAT 59.772 41.667 0.00 0.00 0.00 2.29
522 523 3.587061 TGGGCTTGAAAGAGGAATCTGTA 59.413 43.478 0.00 0.00 0.00 2.74
523 524 2.376518 TGGGCTTGAAAGAGGAATCTGT 59.623 45.455 0.00 0.00 0.00 3.41
524 525 2.751806 GTGGGCTTGAAAGAGGAATCTG 59.248 50.000 0.00 0.00 0.00 2.90
525 526 2.376518 TGTGGGCTTGAAAGAGGAATCT 59.623 45.455 0.00 0.00 0.00 2.40
526 527 2.795329 TGTGGGCTTGAAAGAGGAATC 58.205 47.619 0.00 0.00 0.00 2.52
527 528 2.978156 TGTGGGCTTGAAAGAGGAAT 57.022 45.000 0.00 0.00 0.00 3.01
528 529 2.746279 TTGTGGGCTTGAAAGAGGAA 57.254 45.000 0.00 0.00 0.00 3.36
529 530 2.795329 GATTGTGGGCTTGAAAGAGGA 58.205 47.619 0.00 0.00 0.00 3.71
530 531 1.470098 CGATTGTGGGCTTGAAAGAGG 59.530 52.381 0.00 0.00 0.00 3.69
531 532 2.154462 ACGATTGTGGGCTTGAAAGAG 58.846 47.619 0.00 0.00 0.00 2.85
532 533 2.151202 GACGATTGTGGGCTTGAAAGA 58.849 47.619 0.00 0.00 0.00 2.52
533 534 1.879380 TGACGATTGTGGGCTTGAAAG 59.121 47.619 0.00 0.00 0.00 2.62
534 535 1.974265 TGACGATTGTGGGCTTGAAA 58.026 45.000 0.00 0.00 0.00 2.69
535 536 1.974265 TTGACGATTGTGGGCTTGAA 58.026 45.000 0.00 0.00 0.00 2.69
536 537 1.974265 TTTGACGATTGTGGGCTTGA 58.026 45.000 0.00 0.00 0.00 3.02
537 538 4.433186 TTATTTGACGATTGTGGGCTTG 57.567 40.909 0.00 0.00 0.00 4.01
538 539 6.680378 GCTTATTATTTGACGATTGTGGGCTT 60.680 38.462 0.00 0.00 0.00 4.35
539 540 5.221048 GCTTATTATTTGACGATTGTGGGCT 60.221 40.000 0.00 0.00 0.00 5.19
540 541 4.976116 GCTTATTATTTGACGATTGTGGGC 59.024 41.667 0.00 0.00 0.00 5.36
541 542 5.519722 GGCTTATTATTTGACGATTGTGGG 58.480 41.667 0.00 0.00 0.00 4.61
542 543 5.204833 CGGCTTATTATTTGACGATTGTGG 58.795 41.667 0.00 0.00 33.51 4.17
543 544 5.204833 CCGGCTTATTATTTGACGATTGTG 58.795 41.667 0.00 0.00 33.51 3.33
544 545 4.274950 CCCGGCTTATTATTTGACGATTGT 59.725 41.667 0.00 0.00 33.51 2.71
545 546 4.320202 CCCCGGCTTATTATTTGACGATTG 60.320 45.833 0.00 0.00 33.51 2.67
546 547 3.818773 CCCCGGCTTATTATTTGACGATT 59.181 43.478 0.00 0.00 33.51 3.34
547 548 3.408634 CCCCGGCTTATTATTTGACGAT 58.591 45.455 0.00 0.00 33.51 3.73
548 549 2.485835 CCCCCGGCTTATTATTTGACGA 60.486 50.000 0.00 0.00 33.51 4.20
549 550 1.877443 CCCCCGGCTTATTATTTGACG 59.123 52.381 0.00 0.00 0.00 4.35
569 570 2.804697 AATTTGGGTACGTTTGCACC 57.195 45.000 0.00 0.00 0.00 5.01
570 571 3.054166 GGAAATTTGGGTACGTTTGCAC 58.946 45.455 0.00 0.00 0.00 4.57
571 572 2.693591 TGGAAATTTGGGTACGTTTGCA 59.306 40.909 0.00 0.00 31.03 4.08
572 573 3.372660 TGGAAATTTGGGTACGTTTGC 57.627 42.857 0.00 0.00 0.00 3.68
573 574 5.006844 GGTTTTGGAAATTTGGGTACGTTTG 59.993 40.000 0.00 0.00 0.00 2.93
574 575 5.117584 GGTTTTGGAAATTTGGGTACGTTT 58.882 37.500 0.00 0.00 0.00 3.60
575 576 4.161754 TGGTTTTGGAAATTTGGGTACGTT 59.838 37.500 0.00 0.00 0.00 3.99
576 577 3.705072 TGGTTTTGGAAATTTGGGTACGT 59.295 39.130 0.00 0.00 0.00 3.57
577 578 4.323553 TGGTTTTGGAAATTTGGGTACG 57.676 40.909 0.00 0.00 0.00 3.67
578 579 6.292150 TCAATGGTTTTGGAAATTTGGGTAC 58.708 36.000 0.00 0.00 0.00 3.34
579 580 6.500589 TCAATGGTTTTGGAAATTTGGGTA 57.499 33.333 0.00 0.00 0.00 3.69
580 581 5.379706 TCAATGGTTTTGGAAATTTGGGT 57.620 34.783 0.00 0.00 0.00 4.51
581 582 5.591877 TGTTCAATGGTTTTGGAAATTTGGG 59.408 36.000 0.00 0.00 0.00 4.12
582 583 6.094603 TGTGTTCAATGGTTTTGGAAATTTGG 59.905 34.615 0.00 0.00 0.00 3.28
583 584 7.081526 TGTGTTCAATGGTTTTGGAAATTTG 57.918 32.000 0.00 0.00 0.00 2.32
584 585 7.878547 ATGTGTTCAATGGTTTTGGAAATTT 57.121 28.000 0.00 0.00 0.00 1.82
585 586 7.878547 AATGTGTTCAATGGTTTTGGAAATT 57.121 28.000 0.00 0.00 0.00 1.82
586 587 8.970859 TTAATGTGTTCAATGGTTTTGGAAAT 57.029 26.923 0.00 0.00 0.00 2.17
587 588 8.792830 TTTAATGTGTTCAATGGTTTTGGAAA 57.207 26.923 0.00 0.00 0.00 3.13
588 589 8.669243 GTTTTAATGTGTTCAATGGTTTTGGAA 58.331 29.630 0.00 0.00 0.00 3.53
589 590 7.281100 GGTTTTAATGTGTTCAATGGTTTTGGA 59.719 33.333 0.00 0.00 0.00 3.53
590 591 7.281999 AGGTTTTAATGTGTTCAATGGTTTTGG 59.718 33.333 0.00 0.00 0.00 3.28
591 592 8.207521 AGGTTTTAATGTGTTCAATGGTTTTG 57.792 30.769 0.00 0.00 0.00 2.44
592 593 8.800370 AAGGTTTTAATGTGTTCAATGGTTTT 57.200 26.923 0.00 0.00 0.00 2.43
593 594 7.497579 GGAAGGTTTTAATGTGTTCAATGGTTT 59.502 33.333 0.00 0.00 0.00 3.27
594 595 6.989759 GGAAGGTTTTAATGTGTTCAATGGTT 59.010 34.615 0.00 0.00 0.00 3.67
595 596 6.521162 GGAAGGTTTTAATGTGTTCAATGGT 58.479 36.000 0.00 0.00 0.00 3.55
596 597 5.633182 CGGAAGGTTTTAATGTGTTCAATGG 59.367 40.000 0.00 0.00 0.00 3.16
597 598 6.212955 ACGGAAGGTTTTAATGTGTTCAATG 58.787 36.000 0.00 0.00 0.00 2.82
598 599 6.399639 ACGGAAGGTTTTAATGTGTTCAAT 57.600 33.333 0.00 0.00 0.00 2.57
599 600 5.838531 ACGGAAGGTTTTAATGTGTTCAA 57.161 34.783 0.00 0.00 0.00 2.69
600 601 5.838531 AACGGAAGGTTTTAATGTGTTCA 57.161 34.783 0.00 0.00 34.41 3.18
613 614 0.466739 GGTTGGTGGAAACGGAAGGT 60.467 55.000 0.00 0.00 0.00 3.50
614 615 0.179001 AGGTTGGTGGAAACGGAAGG 60.179 55.000 0.00 0.00 0.00 3.46
615 616 1.687563 AAGGTTGGTGGAAACGGAAG 58.312 50.000 0.00 0.00 0.00 3.46
616 617 2.146920 AAAGGTTGGTGGAAACGGAA 57.853 45.000 0.00 0.00 0.00 4.30
617 618 2.146920 AAAAGGTTGGTGGAAACGGA 57.853 45.000 0.00 0.00 0.00 4.69
618 619 2.166664 TCAAAAAGGTTGGTGGAAACGG 59.833 45.455 0.00 0.00 0.00 4.44
619 620 3.512033 TCAAAAAGGTTGGTGGAAACG 57.488 42.857 0.00 0.00 0.00 3.60
620 621 4.094294 GCTTTCAAAAAGGTTGGTGGAAAC 59.906 41.667 1.96 0.00 0.00 2.78
621 622 4.257731 GCTTTCAAAAAGGTTGGTGGAAA 58.742 39.130 1.96 0.00 0.00 3.13
622 623 3.369997 GGCTTTCAAAAAGGTTGGTGGAA 60.370 43.478 1.96 0.00 0.00 3.53
623 624 2.169561 GGCTTTCAAAAAGGTTGGTGGA 59.830 45.455 1.96 0.00 0.00 4.02
624 625 2.560504 GGCTTTCAAAAAGGTTGGTGG 58.439 47.619 1.96 0.00 0.00 4.61
625 626 2.159170 TCGGCTTTCAAAAAGGTTGGTG 60.159 45.455 1.96 0.00 0.00 4.17
626 627 2.104170 TCGGCTTTCAAAAAGGTTGGT 58.896 42.857 1.96 0.00 0.00 3.67
627 628 2.880963 TCGGCTTTCAAAAAGGTTGG 57.119 45.000 1.96 0.00 0.00 3.77
628 629 5.293079 TCAAATTCGGCTTTCAAAAAGGTTG 59.707 36.000 1.96 0.00 0.00 3.77
629 630 5.423886 TCAAATTCGGCTTTCAAAAAGGTT 58.576 33.333 1.96 0.00 0.00 3.50
630 631 5.017294 TCAAATTCGGCTTTCAAAAAGGT 57.983 34.783 1.96 0.00 0.00 3.50
631 632 5.277297 GGTTCAAATTCGGCTTTCAAAAAGG 60.277 40.000 1.96 0.00 0.00 3.11
632 633 5.523552 AGGTTCAAATTCGGCTTTCAAAAAG 59.476 36.000 0.00 0.00 0.00 2.27
633 634 5.423886 AGGTTCAAATTCGGCTTTCAAAAA 58.576 33.333 0.00 0.00 0.00 1.94
634 635 5.017294 AGGTTCAAATTCGGCTTTCAAAA 57.983 34.783 0.00 0.00 0.00 2.44
635 636 4.664150 AGGTTCAAATTCGGCTTTCAAA 57.336 36.364 0.00 0.00 0.00 2.69
636 637 4.664150 AAGGTTCAAATTCGGCTTTCAA 57.336 36.364 0.00 0.00 0.00 2.69
637 638 4.664150 AAAGGTTCAAATTCGGCTTTCA 57.336 36.364 0.00 0.00 0.00 2.69
638 639 5.737353 CAAAAAGGTTCAAATTCGGCTTTC 58.263 37.500 0.00 0.00 0.00 2.62
639 640 4.035091 GCAAAAAGGTTCAAATTCGGCTTT 59.965 37.500 0.00 0.00 0.00 3.51
640 641 3.559655 GCAAAAAGGTTCAAATTCGGCTT 59.440 39.130 0.00 0.00 0.00 4.35
641 642 3.130633 GCAAAAAGGTTCAAATTCGGCT 58.869 40.909 0.00 0.00 0.00 5.52
642 643 3.059665 CAGCAAAAAGGTTCAAATTCGGC 60.060 43.478 0.00 0.00 0.00 5.54
643 644 4.025813 CACAGCAAAAAGGTTCAAATTCGG 60.026 41.667 0.00 0.00 0.00 4.30
644 645 4.803088 TCACAGCAAAAAGGTTCAAATTCG 59.197 37.500 0.00 0.00 0.00 3.34
645 646 6.313658 AGTTCACAGCAAAAAGGTTCAAATTC 59.686 34.615 0.00 0.00 0.00 2.17
646 647 6.172630 AGTTCACAGCAAAAAGGTTCAAATT 58.827 32.000 0.00 0.00 0.00 1.82
647 648 5.733676 AGTTCACAGCAAAAAGGTTCAAAT 58.266 33.333 0.00 0.00 0.00 2.32
648 649 5.146010 AGTTCACAGCAAAAAGGTTCAAA 57.854 34.783 0.00 0.00 0.00 2.69
649 650 4.219507 TGAGTTCACAGCAAAAAGGTTCAA 59.780 37.500 0.00 0.00 0.00 2.69
650 651 3.761218 TGAGTTCACAGCAAAAAGGTTCA 59.239 39.130 0.00 0.00 0.00 3.18
651 652 4.105486 GTGAGTTCACAGCAAAAAGGTTC 58.895 43.478 7.37 0.00 45.75 3.62
652 653 4.110036 GTGAGTTCACAGCAAAAAGGTT 57.890 40.909 7.37 0.00 45.75 3.50
653 654 3.782889 GTGAGTTCACAGCAAAAAGGT 57.217 42.857 7.37 0.00 45.75 3.50
664 665 3.614616 GTGCTGCTAGTATGTGAGTTCAC 59.385 47.826 5.33 5.33 46.59 3.18
665 666 3.258123 TGTGCTGCTAGTATGTGAGTTCA 59.742 43.478 0.00 0.00 0.00 3.18
666 667 3.849911 TGTGCTGCTAGTATGTGAGTTC 58.150 45.455 0.00 0.00 0.00 3.01
667 668 3.961480 TGTGCTGCTAGTATGTGAGTT 57.039 42.857 0.00 0.00 0.00 3.01
668 669 4.161189 AGAATGTGCTGCTAGTATGTGAGT 59.839 41.667 0.00 0.00 0.00 3.41
669 670 4.691175 AGAATGTGCTGCTAGTATGTGAG 58.309 43.478 0.00 0.00 0.00 3.51
670 671 4.743057 AGAATGTGCTGCTAGTATGTGA 57.257 40.909 0.00 0.00 0.00 3.58
671 672 4.272018 GGAAGAATGTGCTGCTAGTATGTG 59.728 45.833 0.00 0.00 0.00 3.21
672 673 4.446371 GGAAGAATGTGCTGCTAGTATGT 58.554 43.478 0.00 0.00 0.00 2.29
673 674 3.812053 GGGAAGAATGTGCTGCTAGTATG 59.188 47.826 0.00 0.00 0.00 2.39
674 675 3.713764 AGGGAAGAATGTGCTGCTAGTAT 59.286 43.478 0.00 0.00 0.00 2.12
675 676 3.107601 AGGGAAGAATGTGCTGCTAGTA 58.892 45.455 0.00 0.00 0.00 1.82
676 677 1.912043 AGGGAAGAATGTGCTGCTAGT 59.088 47.619 0.00 0.00 0.00 2.57
677 678 2.706339 AGGGAAGAATGTGCTGCTAG 57.294 50.000 0.00 0.00 0.00 3.42
678 679 4.568072 TTAAGGGAAGAATGTGCTGCTA 57.432 40.909 0.00 0.00 0.00 3.49
679 680 3.439857 TTAAGGGAAGAATGTGCTGCT 57.560 42.857 0.00 0.00 0.00 4.24
680 681 4.400567 AGATTTAAGGGAAGAATGTGCTGC 59.599 41.667 0.00 0.00 0.00 5.25
681 682 5.220739 CGAGATTTAAGGGAAGAATGTGCTG 60.221 44.000 0.00 0.00 0.00 4.41
682 683 4.878397 CGAGATTTAAGGGAAGAATGTGCT 59.122 41.667 0.00 0.00 0.00 4.40
683 684 4.636206 ACGAGATTTAAGGGAAGAATGTGC 59.364 41.667 0.00 0.00 0.00 4.57
684 685 6.743575 AACGAGATTTAAGGGAAGAATGTG 57.256 37.500 0.00 0.00 0.00 3.21
685 686 9.462606 AATTAACGAGATTTAAGGGAAGAATGT 57.537 29.630 0.00 0.00 0.00 2.71
686 687 9.937175 GAATTAACGAGATTTAAGGGAAGAATG 57.063 33.333 0.00 0.00 0.00 2.67
687 688 9.907229 AGAATTAACGAGATTTAAGGGAAGAAT 57.093 29.630 0.00 0.00 0.00 2.40
688 689 9.162764 CAGAATTAACGAGATTTAAGGGAAGAA 57.837 33.333 0.00 0.00 0.00 2.52
689 690 7.280205 GCAGAATTAACGAGATTTAAGGGAAGA 59.720 37.037 0.00 0.00 0.00 2.87
690 691 7.410485 GCAGAATTAACGAGATTTAAGGGAAG 58.590 38.462 0.00 0.00 0.00 3.46
691 692 6.317893 GGCAGAATTAACGAGATTTAAGGGAA 59.682 38.462 0.00 0.00 0.00 3.97
692 693 5.820947 GGCAGAATTAACGAGATTTAAGGGA 59.179 40.000 0.00 0.00 0.00 4.20
693 694 5.588648 TGGCAGAATTAACGAGATTTAAGGG 59.411 40.000 0.00 0.00 0.00 3.95
694 695 6.316390 AGTGGCAGAATTAACGAGATTTAAGG 59.684 38.462 0.00 0.00 0.00 2.69
695 696 7.308782 AGTGGCAGAATTAACGAGATTTAAG 57.691 36.000 0.00 0.00 0.00 1.85
696 697 8.780846 TTAGTGGCAGAATTAACGAGATTTAA 57.219 30.769 0.00 0.00 0.00 1.52
697 698 8.662141 GTTTAGTGGCAGAATTAACGAGATTTA 58.338 33.333 0.00 0.00 0.00 1.40
698 699 7.361799 GGTTTAGTGGCAGAATTAACGAGATTT 60.362 37.037 0.00 0.00 0.00 2.17
699 700 6.093633 GGTTTAGTGGCAGAATTAACGAGATT 59.906 38.462 0.00 0.00 0.00 2.40
700 701 5.585047 GGTTTAGTGGCAGAATTAACGAGAT 59.415 40.000 0.00 0.00 0.00 2.75
701 702 4.933400 GGTTTAGTGGCAGAATTAACGAGA 59.067 41.667 0.00 0.00 0.00 4.04
702 703 4.094442 GGGTTTAGTGGCAGAATTAACGAG 59.906 45.833 0.00 0.00 0.00 4.18
703 704 4.004982 GGGTTTAGTGGCAGAATTAACGA 58.995 43.478 0.00 0.00 0.00 3.85
704 705 3.754323 TGGGTTTAGTGGCAGAATTAACG 59.246 43.478 0.00 0.00 0.00 3.18
705 706 4.380550 GCTGGGTTTAGTGGCAGAATTAAC 60.381 45.833 0.00 0.00 0.00 2.01
706 707 3.761752 GCTGGGTTTAGTGGCAGAATTAA 59.238 43.478 0.00 0.00 0.00 1.40
707 708 3.245087 TGCTGGGTTTAGTGGCAGAATTA 60.245 43.478 0.00 0.00 0.00 1.40
708 709 2.171003 GCTGGGTTTAGTGGCAGAATT 58.829 47.619 0.00 0.00 0.00 2.17
709 710 1.075374 TGCTGGGTTTAGTGGCAGAAT 59.925 47.619 0.00 0.00 0.00 2.40
710 711 0.476338 TGCTGGGTTTAGTGGCAGAA 59.524 50.000 0.00 0.00 0.00 3.02
711 712 0.698238 ATGCTGGGTTTAGTGGCAGA 59.302 50.000 0.00 0.00 36.35 4.26
712 713 1.098050 GATGCTGGGTTTAGTGGCAG 58.902 55.000 0.00 0.00 36.35 4.85
713 714 0.403655 TGATGCTGGGTTTAGTGGCA 59.596 50.000 0.00 0.00 37.32 4.92
714 715 1.544724 TTGATGCTGGGTTTAGTGGC 58.455 50.000 0.00 0.00 0.00 5.01
715 716 4.381932 GGATTTTGATGCTGGGTTTAGTGG 60.382 45.833 0.00 0.00 0.00 4.00
716 717 4.220382 TGGATTTTGATGCTGGGTTTAGTG 59.780 41.667 0.00 0.00 0.00 2.74
717 718 4.415596 TGGATTTTGATGCTGGGTTTAGT 58.584 39.130 0.00 0.00 0.00 2.24
718 719 5.603170 ATGGATTTTGATGCTGGGTTTAG 57.397 39.130 0.00 0.00 0.00 1.85
737 738 5.127693 TCGTTCAATGGTTTTGGTAATGG 57.872 39.130 0.00 0.00 0.00 3.16
742 743 3.431068 GGGTTTCGTTCAATGGTTTTGGT 60.431 43.478 0.00 0.00 0.00 3.67
758 759 1.374125 GCGGCAAACATGGGGTTTC 60.374 57.895 0.00 0.00 46.61 2.78
786 787 1.437986 GTACAGCTACGGGCCAGAG 59.562 63.158 10.86 3.90 43.05 3.35
792 793 1.658673 GGATCGGTACAGCTACGGG 59.341 63.158 0.00 0.00 0.00 5.28
893 903 0.393537 AAAGCAGAGGAGATTGCGGG 60.394 55.000 0.00 0.00 44.80 6.13
1010 1028 2.791501 TTCTGGTAAAGGCCCGTCGC 62.792 60.000 0.00 0.00 0.00 5.19
1016 1034 2.304221 AAAGGGTTCTGGTAAAGGCC 57.696 50.000 0.00 0.00 0.00 5.19
1030 1048 4.851179 GCGAGCCGGGGTAAAGGG 62.851 72.222 2.18 0.00 0.00 3.95
1119 1143 2.024226 ATCACACGCGCACGCTAATG 62.024 55.000 13.70 10.76 45.53 1.90
1238 1268 2.279517 GAGGCGCGACACCCATAG 60.280 66.667 17.71 0.00 0.00 2.23
1586 1625 0.245813 GGGAGAACACGTACTGGTCC 59.754 60.000 6.71 0.00 37.29 4.46
1777 1906 0.456995 GAGGAACTTGAGCGACCTCG 60.457 60.000 0.00 0.00 41.55 4.63
1778 1907 0.108567 GGAGGAACTTGAGCGACCTC 60.109 60.000 0.00 0.00 41.55 3.85
1779 1908 0.543174 AGGAGGAACTTGAGCGACCT 60.543 55.000 0.00 0.00 41.55 3.85
1780 1909 0.108567 GAGGAGGAACTTGAGCGACC 60.109 60.000 0.00 0.00 41.55 4.79
1781 1910 0.108567 GGAGGAGGAACTTGAGCGAC 60.109 60.000 0.00 0.00 41.55 5.19
1782 1911 0.541998 TGGAGGAGGAACTTGAGCGA 60.542 55.000 0.00 0.00 41.55 4.93
1783 1912 0.108424 CTGGAGGAGGAACTTGAGCG 60.108 60.000 0.00 0.00 41.55 5.03
1784 1913 0.392327 GCTGGAGGAGGAACTTGAGC 60.392 60.000 0.00 0.00 41.55 4.26
1785 1914 0.108424 CGCTGGAGGAGGAACTTGAG 60.108 60.000 0.00 0.00 41.55 3.02
1786 1915 1.544825 CCGCTGGAGGAGGAACTTGA 61.545 60.000 0.00 0.00 41.55 3.02
1787 1916 1.078848 CCGCTGGAGGAGGAACTTG 60.079 63.158 0.00 0.00 41.55 3.16
1788 1917 1.229209 TCCGCTGGAGGAGGAACTT 60.229 57.895 0.00 0.00 41.55 2.66
2476 2617 4.856607 CCGTCTTCTCGGCTCGGC 62.857 72.222 0.00 0.00 43.96 5.54
2511 2656 2.202349 GCTTTCCATGCACGACGC 60.202 61.111 0.00 0.00 42.89 5.19
2580 2735 7.224557 CCCAAAGAACAAACCAAATCAGTTAAG 59.775 37.037 0.00 0.00 0.00 1.85
2740 2931 5.335191 GGATCTCTTCAAAAACAGCATTCGT 60.335 40.000 0.00 0.00 0.00 3.85
2743 2934 5.302568 TGTGGATCTCTTCAAAAACAGCATT 59.697 36.000 0.00 0.00 0.00 3.56
2777 2968 4.620184 GCTCATTTGAATCAAGTTGACAGC 59.380 41.667 7.96 1.19 0.00 4.40
2807 3036 4.862350 TGCATTTGAATCAAGAGTGTGTG 58.138 39.130 0.00 0.00 0.00 3.82
2808 3037 5.717078 ATGCATTTGAATCAAGAGTGTGT 57.283 34.783 0.00 0.00 0.00 3.72
2858 3100 2.061028 GCTTGCATTTGTAACTGTGCC 58.939 47.619 0.00 0.00 36.79 5.01
2876 3118 1.298014 GCCACTCCTACTGCTTGCT 59.702 57.895 0.00 0.00 0.00 3.91
2881 3123 2.409948 AGAAATGCCACTCCTACTGC 57.590 50.000 0.00 0.00 0.00 4.40
2886 3128 0.548510 GCCCTAGAAATGCCACTCCT 59.451 55.000 0.00 0.00 0.00 3.69
3016 3258 0.322816 GGTGAAATGGGCTCTGCTGA 60.323 55.000 0.00 0.00 0.00 4.26
3020 3262 1.171308 CTGTGGTGAAATGGGCTCTG 58.829 55.000 0.00 0.00 0.00 3.35
3021 3263 0.610232 GCTGTGGTGAAATGGGCTCT 60.610 55.000 0.00 0.00 0.00 4.09
3022 3264 0.895100 TGCTGTGGTGAAATGGGCTC 60.895 55.000 0.00 0.00 0.00 4.70
3023 3265 0.469705 TTGCTGTGGTGAAATGGGCT 60.470 50.000 0.00 0.00 0.00 5.19
3141 3384 2.604174 GCGAATATTCACGGGGCGG 61.604 63.158 15.57 0.00 0.00 6.13
3167 3410 3.683340 GGCGTCGGAGTAATTTTCTTTCT 59.317 43.478 0.00 0.00 0.00 2.52
3168 3411 3.434299 TGGCGTCGGAGTAATTTTCTTTC 59.566 43.478 0.00 0.00 0.00 2.62
3169 3412 3.404899 TGGCGTCGGAGTAATTTTCTTT 58.595 40.909 0.00 0.00 0.00 2.52
3213 3457 2.970974 GAGGCTTTGGTGTCAGCGC 61.971 63.158 0.00 0.00 36.85 5.92
3384 3653 2.159296 CCGGAATTTAAAAAGCTCGGGG 60.159 50.000 0.00 0.00 0.00 5.73
3414 3683 3.480133 CGGGCGGGGGAAAGAGAT 61.480 66.667 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.