Multiple sequence alignment - TraesCS7A01G464600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G464600 chr7A 100.000 6458 0 0 1 6458 661170090 661163633 0.000000e+00 11926.0
1 TraesCS7A01G464600 chr7A 80.666 2281 384 40 2185 4449 732506015 732508254 0.000000e+00 1716.0
2 TraesCS7A01G464600 chr7A 94.000 350 21 0 2 351 268183635 268183286 1.230000e-146 531.0
3 TraesCS7A01G464600 chr7A 77.153 836 155 25 786 1601 732505046 732505865 2.750000e-123 453.0
4 TraesCS7A01G464600 chr7A 93.182 44 1 2 1845 1888 618238913 618238872 5.410000e-06 63.9
5 TraesCS7A01G464600 chr7A 94.872 39 2 0 4623 4661 40556450 40556488 1.940000e-05 62.1
6 TraesCS7A01G464600 chr7B 95.215 5538 206 19 543 6042 628469872 628464356 0.000000e+00 8704.0
7 TraesCS7A01G464600 chr7B 96.163 417 14 2 6040 6455 628464276 628463861 0.000000e+00 680.0
8 TraesCS7A01G464600 chr7B 95.989 349 13 1 2 350 718983201 718982854 3.380000e-157 566.0
9 TraesCS7A01G464600 chr7B 89.577 355 36 1 1 355 629874112 629873759 3.550000e-122 449.0
10 TraesCS7A01G464600 chr7B 96.000 50 2 0 350 399 732327349 732327300 1.490000e-11 82.4
11 TraesCS7A01G464600 chr7B 87.931 58 7 0 354 411 732293926 732293869 1.160000e-07 69.4
12 TraesCS7A01G464600 chr7B 100.000 33 0 0 4587 4619 588889146 588889178 1.940000e-05 62.1
13 TraesCS7A01G464600 chr7D 94.005 2502 148 2 1986 4487 571884471 571881972 0.000000e+00 3788.0
14 TraesCS7A01G464600 chr7D 87.341 1414 136 21 4664 6040 571881904 571880497 0.000000e+00 1580.0
15 TraesCS7A01G464600 chr7D 90.193 1142 74 16 543 1665 571885673 571884551 0.000000e+00 1454.0
16 TraesCS7A01G464600 chr7D 92.000 250 18 2 6209 6457 571880153 571879905 3.710000e-92 350.0
17 TraesCS7A01G464600 chr7D 89.474 76 8 0 4588 4663 401715644 401715569 5.330000e-16 97.1
18 TraesCS7A01G464600 chr7D 93.182 44 1 2 1845 1888 52378030 52377989 5.410000e-06 63.9
19 TraesCS7A01G464600 chr7D 96.970 33 1 0 4587 4619 631996612 631996644 1.000000e-03 56.5
20 TraesCS7A01G464600 chrUn 81.387 2047 358 17 2290 4329 343350500 343348470 0.000000e+00 1648.0
21 TraesCS7A01G464600 chrUn 97.368 38 1 0 1849 1886 49409015 49408978 1.500000e-06 65.8
22 TraesCS7A01G464600 chrUn 97.368 38 1 0 1849 1886 292134849 292134812 1.500000e-06 65.8
23 TraesCS7A01G464600 chr6B 81.387 2047 358 17 2290 4329 8345081 8343051 0.000000e+00 1648.0
24 TraesCS7A01G464600 chr6B 81.387 2047 358 17 2290 4329 8354727 8352697 0.000000e+00 1648.0
25 TraesCS7A01G464600 chr6B 81.387 2047 358 17 2290 4329 8364373 8362343 0.000000e+00 1648.0
26 TraesCS7A01G464600 chr6B 79.654 2256 426 25 2301 4545 25815662 25813429 0.000000e+00 1592.0
27 TraesCS7A01G464600 chr6B 85.965 114 13 2 6090 6200 172580723 172580836 1.140000e-22 119.0
28 TraesCS7A01G464600 chr6B 94.000 50 3 0 350 399 505112666 505112617 6.940000e-10 76.8
29 TraesCS7A01G464600 chr3A 79.616 2242 406 42 2242 4462 8573353 8575564 0.000000e+00 1561.0
30 TraesCS7A01G464600 chr3A 84.337 83 6 1 4588 4663 616249596 616249678 2.500000e-09 75.0
31 TraesCS7A01G464600 chr6A 96.893 354 10 1 2 355 294641998 294642350 5.580000e-165 592.0
32 TraesCS7A01G464600 chr6A 88.983 118 9 3 6088 6202 108674123 108674239 6.750000e-30 143.0
33 TraesCS7A01G464600 chr4A 97.143 350 10 0 2 351 491918739 491918390 5.580000e-165 592.0
34 TraesCS7A01G464600 chr4A 93.696 349 21 1 2 350 30151587 30151934 7.420000e-144 521.0
35 TraesCS7A01G464600 chr4A 97.959 49 1 0 350 398 311664953 311664905 1.150000e-12 86.1
36 TraesCS7A01G464600 chr4A 92.453 53 4 0 350 402 417099133 417099081 6.940000e-10 76.8
37 TraesCS7A01G464600 chr4A 97.297 37 1 0 4627 4663 25026450 25026414 5.410000e-06 63.9
38 TraesCS7A01G464600 chr4A 93.023 43 3 0 4621 4663 56270091 56270133 5.410000e-06 63.9
39 TraesCS7A01G464600 chr4A 94.737 38 2 0 4580 4617 674618619 674618656 6.990000e-05 60.2
40 TraesCS7A01G464600 chr5A 96.045 354 14 0 2 355 570176918 570176565 1.560000e-160 577.0
41 TraesCS7A01G464600 chr5A 93.714 350 22 0 2 351 666296581 666296930 5.740000e-145 525.0
42 TraesCS7A01G464600 chr5A 94.737 38 2 0 1849 1886 411084684 411084721 6.990000e-05 60.2
43 TraesCS7A01G464600 chr4B 96.286 350 12 1 2 351 87688010 87687662 2.020000e-159 573.0
44 TraesCS7A01G464600 chr1A 77.815 302 56 9 5241 5534 1171976 1172274 6.650000e-40 176.0
45 TraesCS7A01G464600 chr1A 88.235 119 10 3 6092 6206 319421886 319421768 8.730000e-29 139.0
46 TraesCS7A01G464600 chr1A 88.136 118 11 2 6088 6202 14057936 14058053 3.140000e-28 137.0
47 TraesCS7A01G464600 chr1A 95.745 47 2 0 350 396 124349301 124349347 6.940000e-10 76.8
48 TraesCS7A01G464600 chr1B 77.134 328 55 13 5224 5534 1250260 1250584 8.610000e-39 172.0
49 TraesCS7A01G464600 chr6D 91.803 122 7 3 6088 6206 435774222 435774101 4.010000e-37 167.0
50 TraesCS7A01G464600 chr6D 91.803 122 7 3 6088 6206 435792461 435792340 4.010000e-37 167.0
51 TraesCS7A01G464600 chr6D 88.136 118 10 3 6088 6202 90190183 90190067 3.140000e-28 137.0
52 TraesCS7A01G464600 chr6D 97.297 37 1 0 994 1030 456417946 456417982 5.410000e-06 63.9
53 TraesCS7A01G464600 chr6D 92.683 41 3 0 1850 1890 78821866 78821826 6.990000e-05 60.2
54 TraesCS7A01G464600 chr3D 83.200 125 19 2 6088 6210 71530957 71530833 5.290000e-21 113.0
55 TraesCS7A01G464600 chr3D 95.238 42 1 1 1849 1890 609938705 609938745 1.500000e-06 65.8
56 TraesCS7A01G464600 chr5D 88.732 71 7 1 4584 4654 481255628 481255559 1.150000e-12 86.1
57 TraesCS7A01G464600 chr3B 97.872 47 1 0 350 396 526279432 526279478 1.490000e-11 82.4
58 TraesCS7A01G464600 chr3B 100.000 30 0 0 4588 4617 31100329 31100358 1.000000e-03 56.5
59 TraesCS7A01G464600 chr3B 100.000 30 0 0 4588 4617 31107446 31107475 1.000000e-03 56.5
60 TraesCS7A01G464600 chr2D 94.118 51 2 1 350 399 109125090 109125040 6.940000e-10 76.8
61 TraesCS7A01G464600 chr2D 89.583 48 4 1 4626 4672 638137160 638137207 6.990000e-05 60.2
62 TraesCS7A01G464600 chr2B 91.379 58 2 3 1836 1890 789867197 789867254 6.940000e-10 76.8
63 TraesCS7A01G464600 chr1D 92.308 52 4 0 351 402 234197236 234197185 2.500000e-09 75.0
64 TraesCS7A01G464600 chr5B 97.500 40 1 0 4581 4620 351484934 351484895 1.160000e-07 69.4
65 TraesCS7A01G464600 chr4D 100.000 36 0 0 4628 4663 442169840 442169875 4.180000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G464600 chr7A 661163633 661170090 6457 True 11926.0 11926 100.00000 1 6458 1 chr7A.!!$R3 6457
1 TraesCS7A01G464600 chr7A 732505046 732508254 3208 False 1084.5 1716 78.90950 786 4449 2 chr7A.!!$F2 3663
2 TraesCS7A01G464600 chr7B 628463861 628469872 6011 True 4692.0 8704 95.68900 543 6455 2 chr7B.!!$R5 5912
3 TraesCS7A01G464600 chr7D 571879905 571885673 5768 True 1793.0 3788 90.88475 543 6457 4 chr7D.!!$R3 5914
4 TraesCS7A01G464600 chrUn 343348470 343350500 2030 True 1648.0 1648 81.38700 2290 4329 1 chrUn.!!$R3 2039
5 TraesCS7A01G464600 chr6B 8343051 8345081 2030 True 1648.0 1648 81.38700 2290 4329 1 chr6B.!!$R1 2039
6 TraesCS7A01G464600 chr6B 8352697 8354727 2030 True 1648.0 1648 81.38700 2290 4329 1 chr6B.!!$R2 2039
7 TraesCS7A01G464600 chr6B 8362343 8364373 2030 True 1648.0 1648 81.38700 2290 4329 1 chr6B.!!$R3 2039
8 TraesCS7A01G464600 chr6B 25813429 25815662 2233 True 1592.0 1592 79.65400 2301 4545 1 chr6B.!!$R4 2244
9 TraesCS7A01G464600 chr3A 8573353 8575564 2211 False 1561.0 1561 79.61600 2242 4462 1 chr3A.!!$F1 2220

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
802 821 0.034670 GAATGGAGCTGAGCCCAGTT 60.035 55.0 17.37 12.33 42.35 3.16 F
1162 1190 0.034186 GTGGCTCCCATGGATCAACA 60.034 55.0 15.22 2.49 35.28 3.33 F
1921 1958 0.249911 GAGCACACACCCGACTTCTT 60.250 55.0 0.00 0.00 0.00 2.52 F
2456 2504 0.395586 TGCTGCAGTTTTCACCCTGT 60.396 50.0 16.64 0.00 0.00 4.00 F
3414 3480 0.463654 GAGTATGCGCCATTCCACCA 60.464 55.0 4.18 0.00 0.00 4.17 F
4817 4889 0.027455 CAAAAGCGCGTCAGAACACA 59.973 50.0 8.43 0.00 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1900 1937 0.320771 GAAGTCGGGTGTGTGCTCAT 60.321 55.000 0.00 0.00 0.00 2.90 R
2150 2187 1.946768 ACCACCGCGATTTCAATATGG 59.053 47.619 8.23 3.31 0.00 2.74 R
3414 3480 0.320374 TCGGAAGGCGAACAATGTCT 59.680 50.000 0.00 0.00 0.00 3.41 R
3910 3979 0.326264 ACCCACAATGAGAGGACTGC 59.674 55.000 0.00 0.00 0.00 4.40 R
5287 5389 0.322975 ATGCTCTTCTTCGTGGTGCT 59.677 50.000 0.00 0.00 0.00 4.40 R
6364 6747 0.390866 ATGTGCTGACAGAAGAGGCG 60.391 55.000 6.65 0.00 34.87 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.994425 TTGCAGTTGTAAAATAGAGGATTGA 57.006 32.000 0.00 0.00 0.00 2.57
26 27 7.994425 TGCAGTTGTAAAATAGAGGATTGAA 57.006 32.000 0.00 0.00 0.00 2.69
27 28 8.402798 TGCAGTTGTAAAATAGAGGATTGAAA 57.597 30.769 0.00 0.00 0.00 2.69
28 29 8.855110 TGCAGTTGTAAAATAGAGGATTGAAAA 58.145 29.630 0.00 0.00 0.00 2.29
29 30 9.691362 GCAGTTGTAAAATAGAGGATTGAAAAA 57.309 29.630 0.00 0.00 0.00 1.94
66 67 6.834168 AGGAATATGAAACAAATGGAACGT 57.166 33.333 0.00 0.00 0.00 3.99
67 68 7.227049 AGGAATATGAAACAAATGGAACGTT 57.773 32.000 0.00 0.00 0.00 3.99
68 69 7.666623 AGGAATATGAAACAAATGGAACGTTT 58.333 30.769 0.46 0.00 35.63 3.60
69 70 7.598493 AGGAATATGAAACAAATGGAACGTTTG 59.402 33.333 0.46 11.27 41.22 2.93
70 71 7.596995 GGAATATGAAACAAATGGAACGTTTGA 59.403 33.333 17.85 0.00 38.51 2.69
71 72 8.879342 AATATGAAACAAATGGAACGTTTGAA 57.121 26.923 17.85 0.00 38.51 2.69
72 73 8.879342 ATATGAAACAAATGGAACGTTTGAAA 57.121 26.923 17.85 4.00 38.51 2.69
73 74 7.784633 ATGAAACAAATGGAACGTTTGAAAT 57.215 28.000 17.85 5.99 38.51 2.17
74 75 6.998338 TGAAACAAATGGAACGTTTGAAATG 58.002 32.000 17.85 2.57 38.51 2.32
75 76 5.402464 AACAAATGGAACGTTTGAAATGC 57.598 34.783 17.85 0.00 38.51 3.56
76 77 4.437239 ACAAATGGAACGTTTGAAATGCA 58.563 34.783 17.85 0.00 38.51 3.96
77 78 4.507388 ACAAATGGAACGTTTGAAATGCAG 59.493 37.500 17.85 0.00 38.51 4.41
78 79 2.791383 TGGAACGTTTGAAATGCAGG 57.209 45.000 0.46 0.00 0.00 4.85
79 80 2.302260 TGGAACGTTTGAAATGCAGGA 58.698 42.857 0.46 0.00 0.00 3.86
80 81 2.690497 TGGAACGTTTGAAATGCAGGAA 59.310 40.909 0.46 0.00 0.00 3.36
81 82 3.049912 GGAACGTTTGAAATGCAGGAAC 58.950 45.455 0.46 0.00 0.00 3.62
82 83 3.243401 GGAACGTTTGAAATGCAGGAACT 60.243 43.478 0.46 0.00 43.88 3.01
98 99 5.397142 AGGAACTGAAATCAAAGGAATGC 57.603 39.130 0.00 0.00 37.18 3.56
99 100 4.834496 AGGAACTGAAATCAAAGGAATGCA 59.166 37.500 0.00 0.00 37.18 3.96
100 101 5.482878 AGGAACTGAAATCAAAGGAATGCAT 59.517 36.000 0.00 0.00 37.18 3.96
101 102 6.013984 AGGAACTGAAATCAAAGGAATGCATT 60.014 34.615 12.83 12.83 37.18 3.56
102 103 7.178983 AGGAACTGAAATCAAAGGAATGCATTA 59.821 33.333 12.97 0.00 37.18 1.90
103 104 7.983484 GGAACTGAAATCAAAGGAATGCATTAT 59.017 33.333 12.97 0.85 0.00 1.28
104 105 9.374838 GAACTGAAATCAAAGGAATGCATTATT 57.625 29.630 12.97 7.72 0.00 1.40
105 106 9.729281 AACTGAAATCAAAGGAATGCATTATTT 57.271 25.926 12.97 12.99 0.00 1.40
113 114 9.679661 TCAAAGGAATGCATTATTTAGTACAGA 57.320 29.630 12.97 6.47 0.00 3.41
117 118 8.903820 AGGAATGCATTATTTAGTACAGAAACC 58.096 33.333 12.97 3.28 0.00 3.27
118 119 8.682710 GGAATGCATTATTTAGTACAGAAACCA 58.317 33.333 12.97 0.00 0.00 3.67
121 122 7.479980 TGCATTATTTAGTACAGAAACCATGC 58.520 34.615 19.48 19.48 36.24 4.06
122 123 6.632834 GCATTATTTAGTACAGAAACCATGCG 59.367 38.462 15.47 0.00 30.70 4.73
123 124 4.616181 ATTTAGTACAGAAACCATGCGC 57.384 40.909 0.00 0.00 0.00 6.09
124 125 3.328382 TTAGTACAGAAACCATGCGCT 57.672 42.857 9.73 0.00 0.00 5.92
125 126 1.442769 AGTACAGAAACCATGCGCTG 58.557 50.000 9.73 4.25 34.65 5.18
133 134 3.512035 CCATGCGCTGGTATGCAA 58.488 55.556 9.73 0.00 45.45 4.08
134 135 1.064621 CCATGCGCTGGTATGCAAC 59.935 57.895 9.73 0.00 45.45 4.17
135 136 1.378882 CCATGCGCTGGTATGCAACT 61.379 55.000 9.73 0.00 45.45 3.16
136 137 0.452987 CATGCGCTGGTATGCAACTT 59.547 50.000 9.73 0.00 45.45 2.66
137 138 1.135315 CATGCGCTGGTATGCAACTTT 60.135 47.619 9.73 0.00 45.45 2.66
138 139 1.814793 TGCGCTGGTATGCAACTTTA 58.185 45.000 9.73 0.00 38.34 1.85
139 140 2.364632 TGCGCTGGTATGCAACTTTAT 58.635 42.857 9.73 0.00 38.34 1.40
140 141 2.354510 TGCGCTGGTATGCAACTTTATC 59.645 45.455 9.73 0.00 38.34 1.75
141 142 2.287009 GCGCTGGTATGCAACTTTATCC 60.287 50.000 0.00 0.00 0.00 2.59
142 143 2.290641 CGCTGGTATGCAACTTTATCCC 59.709 50.000 0.00 0.00 0.00 3.85
143 144 3.555966 GCTGGTATGCAACTTTATCCCT 58.444 45.455 0.00 0.00 0.00 4.20
144 145 3.565902 GCTGGTATGCAACTTTATCCCTC 59.434 47.826 0.00 0.00 0.00 4.30
145 146 4.687219 GCTGGTATGCAACTTTATCCCTCT 60.687 45.833 0.00 0.00 0.00 3.69
146 147 5.440610 CTGGTATGCAACTTTATCCCTCTT 58.559 41.667 0.00 0.00 0.00 2.85
147 148 5.192927 TGGTATGCAACTTTATCCCTCTTG 58.807 41.667 0.00 0.00 0.00 3.02
148 149 4.036852 GGTATGCAACTTTATCCCTCTTGC 59.963 45.833 0.00 0.00 38.16 4.01
149 150 2.446435 TGCAACTTTATCCCTCTTGCC 58.554 47.619 0.00 0.00 37.09 4.52
150 151 2.041620 TGCAACTTTATCCCTCTTGCCT 59.958 45.455 0.00 0.00 37.09 4.75
151 152 2.685388 GCAACTTTATCCCTCTTGCCTC 59.315 50.000 0.00 0.00 32.71 4.70
152 153 2.939103 CAACTTTATCCCTCTTGCCTCG 59.061 50.000 0.00 0.00 0.00 4.63
153 154 1.486726 ACTTTATCCCTCTTGCCTCGG 59.513 52.381 0.00 0.00 0.00 4.63
154 155 1.486726 CTTTATCCCTCTTGCCTCGGT 59.513 52.381 0.00 0.00 0.00 4.69
155 156 1.120530 TTATCCCTCTTGCCTCGGTC 58.879 55.000 0.00 0.00 0.00 4.79
156 157 0.261991 TATCCCTCTTGCCTCGGTCT 59.738 55.000 0.00 0.00 0.00 3.85
157 158 0.618968 ATCCCTCTTGCCTCGGTCTT 60.619 55.000 0.00 0.00 0.00 3.01
158 159 0.836400 TCCCTCTTGCCTCGGTCTTT 60.836 55.000 0.00 0.00 0.00 2.52
159 160 0.674895 CCCTCTTGCCTCGGTCTTTG 60.675 60.000 0.00 0.00 0.00 2.77
160 161 0.035458 CCTCTTGCCTCGGTCTTTGT 59.965 55.000 0.00 0.00 0.00 2.83
161 162 1.151668 CTCTTGCCTCGGTCTTTGTG 58.848 55.000 0.00 0.00 0.00 3.33
162 163 0.468226 TCTTGCCTCGGTCTTTGTGT 59.532 50.000 0.00 0.00 0.00 3.72
163 164 1.689813 TCTTGCCTCGGTCTTTGTGTA 59.310 47.619 0.00 0.00 0.00 2.90
164 165 2.103432 TCTTGCCTCGGTCTTTGTGTAA 59.897 45.455 0.00 0.00 0.00 2.41
165 166 2.623878 TGCCTCGGTCTTTGTGTAAA 57.376 45.000 0.00 0.00 0.00 2.01
166 167 2.920524 TGCCTCGGTCTTTGTGTAAAA 58.079 42.857 0.00 0.00 0.00 1.52
167 168 3.280295 TGCCTCGGTCTTTGTGTAAAAA 58.720 40.909 0.00 0.00 0.00 1.94
188 189 7.410120 AAAAAGAGGTCTGACTCAATGTTTT 57.590 32.000 7.85 6.39 39.97 2.43
189 190 8.519799 AAAAAGAGGTCTGACTCAATGTTTTA 57.480 30.769 7.85 0.00 39.97 1.52
190 191 7.497925 AAAGAGGTCTGACTCAATGTTTTAC 57.502 36.000 7.85 0.00 39.97 2.01
191 192 6.426646 AGAGGTCTGACTCAATGTTTTACT 57.573 37.500 7.85 0.00 39.97 2.24
192 193 6.831976 AGAGGTCTGACTCAATGTTTTACTT 58.168 36.000 7.85 0.00 39.97 2.24
193 194 6.931840 AGAGGTCTGACTCAATGTTTTACTTC 59.068 38.462 7.85 0.00 39.97 3.01
194 195 6.591935 AGGTCTGACTCAATGTTTTACTTCA 58.408 36.000 7.85 0.00 0.00 3.02
195 196 7.227156 AGGTCTGACTCAATGTTTTACTTCAT 58.773 34.615 7.85 0.00 0.00 2.57
196 197 7.173907 AGGTCTGACTCAATGTTTTACTTCATG 59.826 37.037 7.85 0.00 0.00 3.07
197 198 6.798959 GTCTGACTCAATGTTTTACTTCATGC 59.201 38.462 0.00 0.00 0.00 4.06
198 199 5.688823 TGACTCAATGTTTTACTTCATGCG 58.311 37.500 0.00 0.00 0.00 4.73
199 200 5.468409 TGACTCAATGTTTTACTTCATGCGA 59.532 36.000 0.00 0.00 0.00 5.10
200 201 6.017523 TGACTCAATGTTTTACTTCATGCGAA 60.018 34.615 0.00 0.00 0.00 4.70
201 202 6.734137 ACTCAATGTTTTACTTCATGCGAAA 58.266 32.000 0.00 0.00 0.00 3.46
202 203 7.370383 ACTCAATGTTTTACTTCATGCGAAAT 58.630 30.769 0.00 0.00 0.00 2.17
203 204 7.538678 ACTCAATGTTTTACTTCATGCGAAATC 59.461 33.333 0.00 0.00 0.00 2.17
204 205 7.366513 TCAATGTTTTACTTCATGCGAAATCA 58.633 30.769 0.00 0.00 0.00 2.57
205 206 7.325821 TCAATGTTTTACTTCATGCGAAATCAC 59.674 33.333 0.00 0.00 0.00 3.06
206 207 6.066054 TGTTTTACTTCATGCGAAATCACA 57.934 33.333 0.00 0.00 0.00 3.58
207 208 6.676950 TGTTTTACTTCATGCGAAATCACAT 58.323 32.000 0.00 0.00 0.00 3.21
208 209 6.581919 TGTTTTACTTCATGCGAAATCACATG 59.418 34.615 5.29 5.29 44.05 3.21
214 215 3.835779 CATGCGAAATCACATGAAACCA 58.164 40.909 0.00 0.00 45.23 3.67
215 216 3.998099 TGCGAAATCACATGAAACCAA 57.002 38.095 0.00 0.00 0.00 3.67
216 217 3.637432 TGCGAAATCACATGAAACCAAC 58.363 40.909 0.00 0.00 0.00 3.77
217 218 3.067320 TGCGAAATCACATGAAACCAACA 59.933 39.130 0.00 0.00 0.00 3.33
218 219 3.670055 GCGAAATCACATGAAACCAACAG 59.330 43.478 0.00 0.00 0.00 3.16
219 220 4.792704 GCGAAATCACATGAAACCAACAGT 60.793 41.667 0.00 0.00 0.00 3.55
220 221 4.676471 CGAAATCACATGAAACCAACAGTG 59.324 41.667 0.00 0.00 0.00 3.66
221 222 5.591099 GAAATCACATGAAACCAACAGTGT 58.409 37.500 0.00 0.00 0.00 3.55
222 223 5.596836 AATCACATGAAACCAACAGTGTT 57.403 34.783 1.64 1.64 0.00 3.32
223 224 5.596836 ATCACATGAAACCAACAGTGTTT 57.403 34.783 5.57 0.00 38.57 2.83
229 230 4.292977 GAAACCAACAGTGTTTCTCTGG 57.707 45.455 5.57 7.61 45.10 3.86
230 231 3.644966 AACCAACAGTGTTTCTCTGGA 57.355 42.857 16.18 0.00 37.25 3.86
231 232 3.864789 ACCAACAGTGTTTCTCTGGAT 57.135 42.857 16.18 0.41 37.25 3.41
232 233 4.170468 ACCAACAGTGTTTCTCTGGATT 57.830 40.909 16.18 0.00 37.25 3.01
233 234 3.885297 ACCAACAGTGTTTCTCTGGATTG 59.115 43.478 16.18 0.00 37.25 2.67
234 235 3.304928 CCAACAGTGTTTCTCTGGATTGC 60.305 47.826 5.57 0.00 37.25 3.56
235 236 3.213206 ACAGTGTTTCTCTGGATTGCA 57.787 42.857 0.00 0.00 37.25 4.08
236 237 3.554934 ACAGTGTTTCTCTGGATTGCAA 58.445 40.909 0.00 0.00 37.25 4.08
237 238 3.316308 ACAGTGTTTCTCTGGATTGCAAC 59.684 43.478 0.00 0.00 37.25 4.17
238 239 3.316029 CAGTGTTTCTCTGGATTGCAACA 59.684 43.478 0.00 0.00 0.00 3.33
239 240 3.567164 AGTGTTTCTCTGGATTGCAACAG 59.433 43.478 0.00 5.95 36.07 3.16
240 241 3.316308 GTGTTTCTCTGGATTGCAACAGT 59.684 43.478 14.65 0.00 36.17 3.55
241 242 4.515191 GTGTTTCTCTGGATTGCAACAGTA 59.485 41.667 14.65 4.53 36.17 2.74
242 243 5.182001 GTGTTTCTCTGGATTGCAACAGTAT 59.818 40.000 14.65 0.00 36.17 2.12
243 244 5.769662 TGTTTCTCTGGATTGCAACAGTATT 59.230 36.000 14.65 0.00 36.17 1.89
244 245 6.072508 TGTTTCTCTGGATTGCAACAGTATTC 60.073 38.462 14.65 2.43 36.17 1.75
245 246 4.517285 TCTCTGGATTGCAACAGTATTCC 58.483 43.478 14.65 11.26 36.17 3.01
246 247 4.225942 TCTCTGGATTGCAACAGTATTCCT 59.774 41.667 14.65 0.00 36.17 3.36
247 248 4.517285 TCTGGATTGCAACAGTATTCCTC 58.483 43.478 14.65 0.42 36.17 3.71
248 249 3.620488 TGGATTGCAACAGTATTCCTCC 58.380 45.455 14.05 9.01 0.00 4.30
249 250 3.010027 TGGATTGCAACAGTATTCCTCCA 59.990 43.478 14.05 11.24 0.00 3.86
250 251 4.210331 GGATTGCAACAGTATTCCTCCAT 58.790 43.478 0.00 0.00 0.00 3.41
251 252 5.104151 TGGATTGCAACAGTATTCCTCCATA 60.104 40.000 14.05 0.00 0.00 2.74
252 253 5.239525 GGATTGCAACAGTATTCCTCCATAC 59.760 44.000 0.00 0.00 0.00 2.39
253 254 5.435686 TTGCAACAGTATTCCTCCATACT 57.564 39.130 0.00 0.00 40.08 2.12
254 255 5.435686 TGCAACAGTATTCCTCCATACTT 57.564 39.130 0.00 0.00 37.81 2.24
255 256 5.185454 TGCAACAGTATTCCTCCATACTTG 58.815 41.667 0.00 0.00 37.81 3.16
256 257 5.186198 GCAACAGTATTCCTCCATACTTGT 58.814 41.667 0.00 0.00 37.81 3.16
257 258 5.648092 GCAACAGTATTCCTCCATACTTGTT 59.352 40.000 0.00 0.00 37.81 2.83
258 259 6.183360 GCAACAGTATTCCTCCATACTTGTTC 60.183 42.308 0.00 0.00 37.81 3.18
259 260 6.875972 ACAGTATTCCTCCATACTTGTTCT 57.124 37.500 0.00 0.00 37.81 3.01
260 261 7.259088 ACAGTATTCCTCCATACTTGTTCTT 57.741 36.000 0.00 0.00 37.81 2.52
261 262 7.106239 ACAGTATTCCTCCATACTTGTTCTTG 58.894 38.462 0.00 0.00 37.81 3.02
262 263 6.037610 CAGTATTCCTCCATACTTGTTCTTGC 59.962 42.308 0.00 0.00 37.81 4.01
263 264 4.365514 TTCCTCCATACTTGTTCTTGCA 57.634 40.909 0.00 0.00 0.00 4.08
264 265 4.365514 TCCTCCATACTTGTTCTTGCAA 57.634 40.909 0.00 0.00 0.00 4.08
265 266 4.724399 TCCTCCATACTTGTTCTTGCAAA 58.276 39.130 0.00 0.00 0.00 3.68
266 267 5.324409 TCCTCCATACTTGTTCTTGCAAAT 58.676 37.500 0.00 0.00 0.00 2.32
267 268 5.415701 TCCTCCATACTTGTTCTTGCAAATC 59.584 40.000 0.00 0.00 0.00 2.17
268 269 5.183713 CCTCCATACTTGTTCTTGCAAATCA 59.816 40.000 0.00 0.00 0.00 2.57
269 270 6.294675 CCTCCATACTTGTTCTTGCAAATCAA 60.295 38.462 0.00 5.61 0.00 2.57
270 271 7.048629 TCCATACTTGTTCTTGCAAATCAAA 57.951 32.000 0.00 0.00 33.65 2.69
271 272 6.922957 TCCATACTTGTTCTTGCAAATCAAAC 59.077 34.615 0.00 3.86 33.65 2.93
272 273 6.700960 CCATACTTGTTCTTGCAAATCAAACA 59.299 34.615 0.00 6.44 33.65 2.83
273 274 7.385752 CCATACTTGTTCTTGCAAATCAAACAT 59.614 33.333 13.70 6.27 33.65 2.71
274 275 6.833342 ACTTGTTCTTGCAAATCAAACATC 57.167 33.333 13.70 0.00 33.65 3.06
275 276 5.459762 ACTTGTTCTTGCAAATCAAACATCG 59.540 36.000 13.70 11.32 33.65 3.84
276 277 3.735240 TGTTCTTGCAAATCAAACATCGC 59.265 39.130 0.00 0.00 33.65 4.58
277 278 3.921119 TCTTGCAAATCAAACATCGCT 57.079 38.095 0.00 0.00 33.65 4.93
278 279 5.153513 GTTCTTGCAAATCAAACATCGCTA 58.846 37.500 0.00 0.00 33.65 4.26
279 280 4.722194 TCTTGCAAATCAAACATCGCTAC 58.278 39.130 0.00 0.00 33.65 3.58
280 281 4.215185 TCTTGCAAATCAAACATCGCTACA 59.785 37.500 0.00 0.00 33.65 2.74
281 282 4.082274 TGCAAATCAAACATCGCTACAG 57.918 40.909 0.00 0.00 0.00 2.74
282 283 3.501828 TGCAAATCAAACATCGCTACAGT 59.498 39.130 0.00 0.00 0.00 3.55
283 284 4.693095 TGCAAATCAAACATCGCTACAGTA 59.307 37.500 0.00 0.00 0.00 2.74
284 285 5.163864 TGCAAATCAAACATCGCTACAGTAG 60.164 40.000 2.85 2.85 0.00 2.57
301 302 8.893219 CTACAGTAGCAAATCCTATGAAATGA 57.107 34.615 0.00 0.00 0.00 2.57
302 303 7.798596 ACAGTAGCAAATCCTATGAAATGAG 57.201 36.000 0.00 0.00 0.00 2.90
303 304 7.568349 ACAGTAGCAAATCCTATGAAATGAGA 58.432 34.615 0.00 0.00 0.00 3.27
304 305 8.049117 ACAGTAGCAAATCCTATGAAATGAGAA 58.951 33.333 0.00 0.00 0.00 2.87
305 306 9.064706 CAGTAGCAAATCCTATGAAATGAGAAT 57.935 33.333 0.00 0.00 0.00 2.40
306 307 9.638176 AGTAGCAAATCCTATGAAATGAGAATT 57.362 29.630 0.00 0.00 0.00 2.17
307 308 9.890352 GTAGCAAATCCTATGAAATGAGAATTC 57.110 33.333 0.00 0.00 0.00 2.17
308 309 7.949434 AGCAAATCCTATGAAATGAGAATTCC 58.051 34.615 0.65 0.00 0.00 3.01
309 310 7.783596 AGCAAATCCTATGAAATGAGAATTCCT 59.216 33.333 0.65 0.00 0.00 3.36
310 311 7.866393 GCAAATCCTATGAAATGAGAATTCCTG 59.134 37.037 0.65 0.00 0.00 3.86
311 312 7.521871 AATCCTATGAAATGAGAATTCCTGC 57.478 36.000 0.65 0.00 0.00 4.85
312 313 5.059161 TCCTATGAAATGAGAATTCCTGCG 58.941 41.667 0.65 0.00 0.00 5.18
313 314 4.818546 CCTATGAAATGAGAATTCCTGCGT 59.181 41.667 0.65 0.00 0.00 5.24
314 315 5.297776 CCTATGAAATGAGAATTCCTGCGTT 59.702 40.000 0.65 0.00 0.00 4.84
315 316 5.649782 ATGAAATGAGAATTCCTGCGTTT 57.350 34.783 0.65 6.20 0.00 3.60
316 317 5.452078 TGAAATGAGAATTCCTGCGTTTT 57.548 34.783 0.65 0.00 0.00 2.43
317 318 5.841810 TGAAATGAGAATTCCTGCGTTTTT 58.158 33.333 0.65 0.00 0.00 1.94
318 319 5.920273 TGAAATGAGAATTCCTGCGTTTTTC 59.080 36.000 0.65 3.84 0.00 2.29
319 320 5.712152 AATGAGAATTCCTGCGTTTTTCT 57.288 34.783 0.65 0.00 0.00 2.52
320 321 5.712152 ATGAGAATTCCTGCGTTTTTCTT 57.288 34.783 0.65 0.00 0.00 2.52
321 322 6.817765 ATGAGAATTCCTGCGTTTTTCTTA 57.182 33.333 0.65 0.00 0.00 2.10
322 323 6.817765 TGAGAATTCCTGCGTTTTTCTTAT 57.182 33.333 0.65 0.00 0.00 1.73
323 324 6.611381 TGAGAATTCCTGCGTTTTTCTTATG 58.389 36.000 0.65 0.00 0.00 1.90
324 325 6.429692 TGAGAATTCCTGCGTTTTTCTTATGA 59.570 34.615 0.65 0.00 0.00 2.15
325 326 7.040755 TGAGAATTCCTGCGTTTTTCTTATGAA 60.041 33.333 0.65 0.00 0.00 2.57
326 327 7.657336 AGAATTCCTGCGTTTTTCTTATGAAA 58.343 30.769 0.65 0.00 40.08 2.69
327 328 8.141268 AGAATTCCTGCGTTTTTCTTATGAAAA 58.859 29.630 11.39 11.39 46.63 2.29
350 351 4.675063 TCCTTCAAATTAAAGGAGGCCT 57.325 40.909 3.86 3.86 45.74 5.19
351 352 5.010708 TCCTTCAAATTAAAGGAGGCCTT 57.989 39.130 6.77 0.00 45.74 4.35
352 353 6.147437 TCCTTCAAATTAAAGGAGGCCTTA 57.853 37.500 6.77 0.00 45.74 2.69
353 354 6.557568 TCCTTCAAATTAAAGGAGGCCTTAA 58.442 36.000 6.77 0.97 45.74 1.85
354 355 7.189087 TCCTTCAAATTAAAGGAGGCCTTAAT 58.811 34.615 6.77 3.86 45.74 1.40
355 356 8.340757 TCCTTCAAATTAAAGGAGGCCTTAATA 58.659 33.333 6.77 0.00 45.74 0.98
356 357 9.147732 CCTTCAAATTAAAGGAGGCCTTAATAT 57.852 33.333 6.77 0.00 43.92 1.28
380 381 5.973651 TTTTCAAATTAACGTGCATTGCA 57.026 30.435 7.38 7.38 35.60 4.08
393 394 4.271590 TGCATTGCACGTATACATTGAC 57.728 40.909 7.38 0.00 31.71 3.18
394 395 3.938334 TGCATTGCACGTATACATTGACT 59.062 39.130 7.38 0.00 31.71 3.41
395 396 5.112686 TGCATTGCACGTATACATTGACTA 58.887 37.500 7.38 0.00 31.71 2.59
396 397 5.582665 TGCATTGCACGTATACATTGACTAA 59.417 36.000 7.38 0.00 31.71 2.24
397 398 6.259829 TGCATTGCACGTATACATTGACTAAT 59.740 34.615 7.38 0.13 31.71 1.73
398 399 7.439655 TGCATTGCACGTATACATTGACTAATA 59.560 33.333 7.38 0.00 31.71 0.98
399 400 8.279800 GCATTGCACGTATACATTGACTAATAA 58.720 33.333 3.15 0.00 0.00 1.40
471 472 6.992063 AAAATGGACTGTAGATGACATGAC 57.008 37.500 0.00 0.00 37.45 3.06
472 473 5.682234 AATGGACTGTAGATGACATGACA 57.318 39.130 0.00 0.00 37.45 3.58
473 474 5.883685 ATGGACTGTAGATGACATGACAT 57.116 39.130 10.50 10.50 37.45 3.06
474 475 5.682234 TGGACTGTAGATGACATGACATT 57.318 39.130 11.92 5.38 37.45 2.71
475 476 5.422145 TGGACTGTAGATGACATGACATTG 58.578 41.667 11.92 4.05 37.45 2.82
476 477 4.813161 GGACTGTAGATGACATGACATTGG 59.187 45.833 11.92 4.35 37.45 3.16
477 478 4.194640 ACTGTAGATGACATGACATTGGC 58.805 43.478 11.92 6.11 37.45 4.52
478 479 4.080695 ACTGTAGATGACATGACATTGGCT 60.081 41.667 11.92 7.45 37.45 4.75
479 480 5.129320 ACTGTAGATGACATGACATTGGCTA 59.871 40.000 11.92 6.56 37.45 3.93
480 481 5.604565 TGTAGATGACATGACATTGGCTAG 58.395 41.667 11.92 0.00 31.20 3.42
481 482 4.767578 AGATGACATGACATTGGCTAGT 57.232 40.909 11.92 0.00 0.00 2.57
482 483 4.701765 AGATGACATGACATTGGCTAGTC 58.298 43.478 11.92 7.65 35.37 2.59
483 484 4.408270 AGATGACATGACATTGGCTAGTCT 59.592 41.667 11.92 0.54 35.81 3.24
484 485 4.558226 TGACATGACATTGGCTAGTCTT 57.442 40.909 0.00 0.00 35.81 3.01
485 486 4.910195 TGACATGACATTGGCTAGTCTTT 58.090 39.130 0.00 0.00 35.81 2.52
486 487 5.316167 TGACATGACATTGGCTAGTCTTTT 58.684 37.500 0.00 0.00 35.81 2.27
487 488 5.769662 TGACATGACATTGGCTAGTCTTTTT 59.230 36.000 0.00 0.00 35.81 1.94
509 510 7.460214 TTTTAATATCTGGACCACCATAGGT 57.540 36.000 0.00 0.00 45.87 3.08
527 528 7.621428 CATAGGTGGAGCTAATTATGATTGG 57.379 40.000 0.00 0.00 0.00 3.16
528 529 4.401925 AGGTGGAGCTAATTATGATTGGC 58.598 43.478 10.14 10.14 46.59 4.52
536 537 5.573146 GCTAATTATGATTGGCCGAATAGC 58.427 41.667 7.25 0.00 42.12 2.97
557 558 1.138247 GGCTCGCTCCATTTTGCTG 59.862 57.895 0.00 0.00 0.00 4.41
570 571 1.172180 TTTGCTGGTTTGCTCTCCCG 61.172 55.000 0.00 0.00 0.00 5.14
571 572 2.032681 GCTGGTTTGCTCTCCCGT 59.967 61.111 0.00 0.00 0.00 5.28
572 573 2.328099 GCTGGTTTGCTCTCCCGTG 61.328 63.158 0.00 0.00 0.00 4.94
574 575 0.535102 CTGGTTTGCTCTCCCGTGTT 60.535 55.000 0.00 0.00 0.00 3.32
575 576 0.534203 TGGTTTGCTCTCCCGTGTTC 60.534 55.000 0.00 0.00 0.00 3.18
773 791 3.006247 GCTCTTTGTTTTGGTTTTGGCA 58.994 40.909 0.00 0.00 0.00 4.92
775 793 4.437255 GCTCTTTGTTTTGGTTTTGGCAAG 60.437 41.667 0.00 0.00 0.00 4.01
778 796 3.258971 TGTTTTGGTTTTGGCAAGAGG 57.741 42.857 0.00 0.00 0.00 3.69
802 821 0.034670 GAATGGAGCTGAGCCCAGTT 60.035 55.000 17.37 12.33 42.35 3.16
953 975 3.082701 GCCTCCTGCTGAGCCTCT 61.083 66.667 0.23 0.00 39.98 3.69
954 976 3.092780 GCCTCCTGCTGAGCCTCTC 62.093 68.421 0.23 0.00 39.98 3.20
955 977 2.784356 CCTCCTGCTGAGCCTCTCG 61.784 68.421 0.23 0.00 39.98 4.04
956 978 1.752310 CTCCTGCTGAGCCTCTCGA 60.752 63.158 0.23 0.00 33.47 4.04
957 979 1.304464 TCCTGCTGAGCCTCTCGAA 60.304 57.895 0.23 0.00 32.35 3.71
958 980 1.141449 CCTGCTGAGCCTCTCGAAG 59.859 63.158 0.23 0.00 32.35 3.79
959 981 1.318886 CCTGCTGAGCCTCTCGAAGA 61.319 60.000 0.23 0.00 32.35 2.87
960 982 0.179140 CTGCTGAGCCTCTCGAAGAC 60.179 60.000 0.23 0.00 32.35 3.01
1065 1087 4.537533 CGATTCGTCAACGGCGCG 62.538 66.667 6.90 0.00 40.29 6.86
1121 1149 2.125147 CGCCCGGCTGAAGATCAA 60.125 61.111 8.05 0.00 0.00 2.57
1122 1150 1.524621 CGCCCGGCTGAAGATCAAT 60.525 57.895 8.05 0.00 0.00 2.57
1162 1190 0.034186 GTGGCTCCCATGGATCAACA 60.034 55.000 15.22 2.49 35.28 3.33
1236 1264 3.118738 GGAGGTACCAGTTCGATGATTGT 60.119 47.826 15.94 0.00 38.79 2.71
1273 1304 3.774528 CTCCTGCTACTGGCCGCA 61.775 66.667 0.00 0.00 40.92 5.69
1279 1310 2.343758 CTACTGGCCGCACTGTGT 59.656 61.111 9.86 0.00 0.00 3.72
1452 1489 0.469331 TCCAGGGACAGTTCGAGTGT 60.469 55.000 2.33 2.33 33.77 3.55
1627 1664 9.887629 CAGAGTCCATATATCTGCTTCATTTAT 57.112 33.333 0.00 0.00 34.55 1.40
1644 1681 7.649533 TCATTTATTGGCAGATTCACTTCAT 57.350 32.000 0.00 0.00 0.00 2.57
1662 1699 9.605275 TCACTTCATCTATTCAGGAATTTACAG 57.395 33.333 0.00 0.00 32.50 2.74
1675 1712 9.383519 TCAGGAATTTACAGTATGAGAAACATC 57.616 33.333 0.00 0.00 39.69 3.06
1678 1715 8.328864 GGAATTTACAGTATGAGAAACATCGTC 58.671 37.037 0.00 0.00 39.69 4.20
1789 1826 4.141287 TCAATTCACTACACCCACTTTGG 58.859 43.478 0.00 0.00 37.25 3.28
1794 1831 5.313280 TCACTACACCCACTTTGGTAATT 57.687 39.130 0.00 0.00 36.67 1.40
1854 1891 6.248629 GCTTAGAAATAAGCGTTTCTTTTCGG 59.751 38.462 16.23 5.78 43.90 4.30
1877 1914 4.631377 GCAAAGGGTGAATTTTATTGGCTC 59.369 41.667 0.00 0.00 0.00 4.70
1897 1934 5.394443 GGCTCAAAATGGAAGATGCATAACA 60.394 40.000 0.00 0.00 0.00 2.41
1900 1937 6.990798 TCAAAATGGAAGATGCATAACACAA 58.009 32.000 0.00 0.00 0.00 3.33
1911 1948 3.236816 GCATAACACAATGAGCACACAC 58.763 45.455 0.00 0.00 0.00 3.82
1913 1950 1.032014 AACACAATGAGCACACACCC 58.968 50.000 0.00 0.00 0.00 4.61
1915 1952 0.884259 CACAATGAGCACACACCCGA 60.884 55.000 0.00 0.00 0.00 5.14
1917 1954 0.603707 CAATGAGCACACACCCGACT 60.604 55.000 0.00 0.00 0.00 4.18
1921 1958 0.249911 GAGCACACACCCGACTTCTT 60.250 55.000 0.00 0.00 0.00 2.52
1949 1986 2.481289 AGCTCTGCTTCCCTTGTTAC 57.519 50.000 0.00 0.00 33.89 2.50
1964 2001 4.201871 CCTTGTTACGTCAGAAGCAAAACA 60.202 41.667 1.25 0.00 0.00 2.83
1967 2004 2.475200 ACGTCAGAAGCAAAACAAGC 57.525 45.000 0.00 0.00 0.00 4.01
1984 2021 4.442706 ACAAGCGAATACCTGGTTCATAG 58.557 43.478 3.84 0.00 0.00 2.23
2052 2089 5.303333 GCTTAACTTGTCCTCCTAGAGCTAT 59.697 44.000 0.00 0.00 0.00 2.97
2072 2109 2.036958 TCATGGGCAATCGTACCTTG 57.963 50.000 0.00 0.00 0.00 3.61
2101 2138 9.515226 TTAATATACTTCTTAATGGGTGCCATC 57.485 33.333 0.00 0.00 44.40 3.51
2124 2161 7.769272 TCAAAATTGTGGTTCATGAAAAGTC 57.231 32.000 10.35 0.00 0.00 3.01
2192 2229 5.348997 GGTTGTGCATTCTCTACTGTAACTC 59.651 44.000 0.00 0.00 0.00 3.01
2404 2452 7.231722 AGGGTAGTTCATGCAGTAGAATAGTAG 59.768 40.741 0.00 0.00 0.00 2.57
2456 2504 0.395586 TGCTGCAGTTTTCACCCTGT 60.396 50.000 16.64 0.00 0.00 4.00
2595 2649 1.068434 AGAAAATGTGGTGGTTTGCCG 59.932 47.619 0.00 0.00 37.67 5.69
2862 2928 3.204306 TGGCTAGCTGAGGATTTCATG 57.796 47.619 15.72 0.00 34.68 3.07
2871 2937 2.815503 TGAGGATTTCATGTGTGCACAG 59.184 45.455 22.40 9.23 45.48 3.66
2898 2964 2.957402 AAGACATGGAGGAAGTTGCA 57.043 45.000 0.00 0.00 0.00 4.08
2900 2966 3.446442 AGACATGGAGGAAGTTGCAAT 57.554 42.857 0.59 0.00 0.00 3.56
3138 3204 3.634397 ACATATGCAACTACACCAGCT 57.366 42.857 1.58 0.00 0.00 4.24
3220 3286 6.705825 GCCTTCATTGATGGTGTTTAAGTTTT 59.294 34.615 17.27 0.00 30.69 2.43
3248 3314 4.132336 GTTCTAAACCTTCGTCTTTGGGT 58.868 43.478 0.00 0.00 0.00 4.51
3315 3381 5.877012 ACTGTTTCGACTGAGATATTTGCAT 59.123 36.000 0.00 0.00 0.00 3.96
3414 3480 0.463654 GAGTATGCGCCATTCCACCA 60.464 55.000 4.18 0.00 0.00 4.17
3557 3623 4.191544 TCTGAAGACAATTTATGGAGCCG 58.808 43.478 0.00 0.00 0.00 5.52
3910 3979 0.753262 CACAGGATTACCCTCCCTCG 59.247 60.000 0.00 0.00 45.60 4.63
4108 4177 6.926272 CAGGGAGAAGTACAGTAATATGCTTC 59.074 42.308 0.00 0.00 34.33 3.86
4180 4249 5.163499 GGGGTAGTTACTGAATCTGACAGAG 60.163 48.000 11.52 0.00 38.55 3.35
4441 4513 4.711355 CCTGGCCCTTTTCATTCATTTCTA 59.289 41.667 0.00 0.00 0.00 2.10
4471 4543 9.284968 CTCCGGTATTACCATTATCTTTCAAAT 57.715 33.333 13.22 0.00 38.47 2.32
4682 4754 5.545723 AGGGAATCAAGTTTCTCTTCTCTCA 59.454 40.000 0.00 0.00 32.37 3.27
4756 4828 1.040646 GCTGGATCTGGACCACGATA 58.959 55.000 6.46 0.00 33.57 2.92
4793 4865 3.045688 CCTCTTGTTCAAGCGCTTTTTC 58.954 45.455 22.51 13.56 0.00 2.29
4817 4889 0.027455 CAAAAGCGCGTCAGAACACA 59.973 50.000 8.43 0.00 0.00 3.72
5026 5098 4.219033 CGCAAAATTGTTCAGTACCACTC 58.781 43.478 0.00 0.00 0.00 3.51
5148 5247 0.533531 CTGCTGAGACTGGTGTGCAA 60.534 55.000 0.00 0.00 0.00 4.08
5180 5279 1.066587 CTCCCTCATCGCGTTCTCC 59.933 63.158 5.77 0.00 0.00 3.71
5196 5295 3.051940 TCTCCCTCATCAGCAAGGTAT 57.948 47.619 0.00 0.00 0.00 2.73
5233 5332 5.043248 CGCCACTTAAAATTTCCCATCATC 58.957 41.667 0.00 0.00 0.00 2.92
5236 5335 6.035843 CCACTTAAAATTTCCCATCATCGTG 58.964 40.000 0.00 0.00 0.00 4.35
5338 5443 2.573462 TCAACTTAGCTGGAGAAGGCAT 59.427 45.455 0.00 0.00 0.00 4.40
5500 5606 6.158598 ACAAATTGCTCGTTTAAGAATGCAT 58.841 32.000 0.00 0.00 0.00 3.96
5539 5645 5.481473 AGTGAAGGTGGTTATGCATTCAAAT 59.519 36.000 3.54 0.00 0.00 2.32
5635 5742 7.512992 AGGAATCCCACATACTTAATGAGAAG 58.487 38.462 0.00 0.00 39.07 2.85
5660 5767 6.510960 GCTTGTTTTGGAAAAACGTATTGCAT 60.511 34.615 8.62 0.00 33.05 3.96
5938 6046 7.592938 TGGTGAACTGATGTGATTGATTTAAC 58.407 34.615 0.00 0.00 0.00 2.01
6079 6462 6.466812 AGTTGCCAATTCAAAAGAAATAGGG 58.533 36.000 0.00 0.00 0.00 3.53
6200 6583 4.682860 CAGAAGCATAAGCCAAACAAACAG 59.317 41.667 0.00 0.00 43.56 3.16
6207 6590 2.466846 AGCCAAACAAACAGGACCTTT 58.533 42.857 0.00 0.00 0.00 3.11
6338 6721 1.519455 ATAGGCAGCACGTCGAAGC 60.519 57.895 0.00 2.43 0.00 3.86
6399 6782 2.680805 GCACATAACCTGCAGCCTTCTA 60.681 50.000 8.66 0.00 34.56 2.10
6404 6787 0.179000 ACCTGCAGCCTTCTATTCCG 59.821 55.000 8.66 0.00 0.00 4.30
6448 6831 5.431765 CAATCTGAAGGTATGTACAGCCTT 58.568 41.667 25.54 25.54 44.46 4.35
6452 6835 5.705441 TCTGAAGGTATGTACAGCCTTTTTG 59.295 40.000 25.82 19.92 42.13 2.44
6457 6840 5.410439 AGGTATGTACAGCCTTTTTGTTACG 59.590 40.000 14.07 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.579850 TCAATCCTCTATTTTACAACTGCAAT 57.420 30.769 0.00 0.00 0.00 3.56
1 2 7.994425 TCAATCCTCTATTTTACAACTGCAA 57.006 32.000 0.00 0.00 0.00 4.08
2 3 7.994425 TTCAATCCTCTATTTTACAACTGCA 57.006 32.000 0.00 0.00 0.00 4.41
3 4 9.691362 TTTTTCAATCCTCTATTTTACAACTGC 57.309 29.630 0.00 0.00 0.00 4.40
40 41 9.621629 ACGTTCCATTTGTTTCATATTCCTATA 57.378 29.630 0.00 0.00 0.00 1.31
41 42 8.519799 ACGTTCCATTTGTTTCATATTCCTAT 57.480 30.769 0.00 0.00 0.00 2.57
42 43 7.931578 ACGTTCCATTTGTTTCATATTCCTA 57.068 32.000 0.00 0.00 0.00 2.94
43 44 6.834168 ACGTTCCATTTGTTTCATATTCCT 57.166 33.333 0.00 0.00 0.00 3.36
44 45 7.596995 TCAAACGTTCCATTTGTTTCATATTCC 59.403 33.333 0.00 0.00 38.08 3.01
45 46 8.514136 TCAAACGTTCCATTTGTTTCATATTC 57.486 30.769 0.00 0.00 38.08 1.75
46 47 8.879342 TTCAAACGTTCCATTTGTTTCATATT 57.121 26.923 0.00 0.00 38.08 1.28
47 48 8.879342 TTTCAAACGTTCCATTTGTTTCATAT 57.121 26.923 0.00 0.00 38.08 1.78
48 49 8.759641 CATTTCAAACGTTCCATTTGTTTCATA 58.240 29.630 0.00 0.00 38.08 2.15
49 50 7.629130 CATTTCAAACGTTCCATTTGTTTCAT 58.371 30.769 0.00 0.00 38.08 2.57
50 51 6.456181 GCATTTCAAACGTTCCATTTGTTTCA 60.456 34.615 0.00 0.00 38.08 2.69
51 52 5.901336 GCATTTCAAACGTTCCATTTGTTTC 59.099 36.000 0.00 0.00 38.08 2.78
52 53 5.352569 TGCATTTCAAACGTTCCATTTGTTT 59.647 32.000 0.00 0.00 38.08 2.83
53 54 4.872691 TGCATTTCAAACGTTCCATTTGTT 59.127 33.333 0.00 0.00 38.08 2.83
54 55 4.437239 TGCATTTCAAACGTTCCATTTGT 58.563 34.783 0.00 0.00 38.08 2.83
55 56 4.084433 CCTGCATTTCAAACGTTCCATTTG 60.084 41.667 0.00 0.00 38.21 2.32
56 57 4.057432 CCTGCATTTCAAACGTTCCATTT 58.943 39.130 0.00 0.00 0.00 2.32
57 58 3.320541 TCCTGCATTTCAAACGTTCCATT 59.679 39.130 0.00 0.00 0.00 3.16
58 59 2.890311 TCCTGCATTTCAAACGTTCCAT 59.110 40.909 0.00 0.00 0.00 3.41
59 60 2.302260 TCCTGCATTTCAAACGTTCCA 58.698 42.857 0.00 0.00 0.00 3.53
60 61 3.049912 GTTCCTGCATTTCAAACGTTCC 58.950 45.455 0.00 0.00 0.00 3.62
61 62 3.730715 CAGTTCCTGCATTTCAAACGTTC 59.269 43.478 0.00 0.00 0.00 3.95
62 63 3.380004 TCAGTTCCTGCATTTCAAACGTT 59.620 39.130 0.00 0.00 0.00 3.99
63 64 2.948979 TCAGTTCCTGCATTTCAAACGT 59.051 40.909 0.00 0.00 0.00 3.99
64 65 3.624326 TCAGTTCCTGCATTTCAAACG 57.376 42.857 0.00 0.00 0.00 3.60
65 66 5.984926 TGATTTCAGTTCCTGCATTTCAAAC 59.015 36.000 0.00 0.00 0.00 2.93
66 67 6.159299 TGATTTCAGTTCCTGCATTTCAAA 57.841 33.333 0.00 0.00 0.00 2.69
67 68 5.787953 TGATTTCAGTTCCTGCATTTCAA 57.212 34.783 0.00 0.00 0.00 2.69
68 69 5.787953 TTGATTTCAGTTCCTGCATTTCA 57.212 34.783 0.00 0.00 0.00 2.69
69 70 5.636543 CCTTTGATTTCAGTTCCTGCATTTC 59.363 40.000 0.00 0.00 0.00 2.17
70 71 5.305128 TCCTTTGATTTCAGTTCCTGCATTT 59.695 36.000 0.00 0.00 0.00 2.32
71 72 4.834496 TCCTTTGATTTCAGTTCCTGCATT 59.166 37.500 0.00 0.00 0.00 3.56
72 73 4.410099 TCCTTTGATTTCAGTTCCTGCAT 58.590 39.130 0.00 0.00 0.00 3.96
73 74 3.831323 TCCTTTGATTTCAGTTCCTGCA 58.169 40.909 0.00 0.00 0.00 4.41
74 75 4.853924 TTCCTTTGATTTCAGTTCCTGC 57.146 40.909 0.00 0.00 0.00 4.85
75 76 5.166398 GCATTCCTTTGATTTCAGTTCCTG 58.834 41.667 0.00 0.00 0.00 3.86
76 77 4.834496 TGCATTCCTTTGATTTCAGTTCCT 59.166 37.500 0.00 0.00 0.00 3.36
77 78 5.138125 TGCATTCCTTTGATTTCAGTTCC 57.862 39.130 0.00 0.00 0.00 3.62
78 79 8.937634 ATAATGCATTCCTTTGATTTCAGTTC 57.062 30.769 16.86 0.00 0.00 3.01
79 80 9.729281 AAATAATGCATTCCTTTGATTTCAGTT 57.271 25.926 16.86 0.00 0.00 3.16
87 88 9.679661 TCTGTACTAAATAATGCATTCCTTTGA 57.320 29.630 16.86 6.91 0.00 2.69
91 92 8.903820 GGTTTCTGTACTAAATAATGCATTCCT 58.096 33.333 16.86 1.50 0.00 3.36
92 93 8.682710 TGGTTTCTGTACTAAATAATGCATTCC 58.317 33.333 16.86 5.49 0.00 3.01
95 96 8.137437 GCATGGTTTCTGTACTAAATAATGCAT 58.863 33.333 22.06 0.00 37.41 3.96
96 97 7.479980 GCATGGTTTCTGTACTAAATAATGCA 58.520 34.615 22.06 0.00 37.41 3.96
97 98 6.632834 CGCATGGTTTCTGTACTAAATAATGC 59.367 38.462 19.84 19.84 35.88 3.56
98 99 6.632834 GCGCATGGTTTCTGTACTAAATAATG 59.367 38.462 0.30 5.05 0.00 1.90
99 100 6.542370 AGCGCATGGTTTCTGTACTAAATAAT 59.458 34.615 11.47 0.00 0.00 1.28
100 101 5.878116 AGCGCATGGTTTCTGTACTAAATAA 59.122 36.000 11.47 0.00 0.00 1.40
101 102 5.293324 CAGCGCATGGTTTCTGTACTAAATA 59.707 40.000 11.47 0.00 0.00 1.40
102 103 4.094887 CAGCGCATGGTTTCTGTACTAAAT 59.905 41.667 11.47 0.00 0.00 1.40
103 104 3.435327 CAGCGCATGGTTTCTGTACTAAA 59.565 43.478 11.47 0.00 0.00 1.85
104 105 3.000041 CAGCGCATGGTTTCTGTACTAA 59.000 45.455 11.47 0.00 0.00 2.24
105 106 2.616960 CAGCGCATGGTTTCTGTACTA 58.383 47.619 11.47 0.00 0.00 1.82
106 107 1.442769 CAGCGCATGGTTTCTGTACT 58.557 50.000 11.47 0.00 0.00 2.73
107 108 0.447801 CCAGCGCATGGTTTCTGTAC 59.552 55.000 11.47 0.00 44.91 2.90
108 109 2.853159 CCAGCGCATGGTTTCTGTA 58.147 52.632 11.47 0.00 44.91 2.74
109 110 3.672293 CCAGCGCATGGTTTCTGT 58.328 55.556 11.47 0.00 44.91 3.41
117 118 0.452987 AAGTTGCATACCAGCGCATG 59.547 50.000 11.47 5.50 38.10 4.06
118 119 1.176527 AAAGTTGCATACCAGCGCAT 58.823 45.000 11.47 0.00 38.10 4.73
119 120 1.814793 TAAAGTTGCATACCAGCGCA 58.185 45.000 11.47 0.00 37.31 6.09
120 121 2.287009 GGATAAAGTTGCATACCAGCGC 60.287 50.000 0.00 0.00 37.31 5.92
121 122 2.290641 GGGATAAAGTTGCATACCAGCG 59.709 50.000 0.00 0.00 37.31 5.18
122 123 3.555966 AGGGATAAAGTTGCATACCAGC 58.444 45.455 0.00 0.00 0.00 4.85
123 124 5.041191 AGAGGGATAAAGTTGCATACCAG 57.959 43.478 0.00 0.00 0.00 4.00
124 125 5.192927 CAAGAGGGATAAAGTTGCATACCA 58.807 41.667 0.00 0.00 0.00 3.25
125 126 4.036852 GCAAGAGGGATAAAGTTGCATACC 59.963 45.833 0.00 0.00 42.48 2.73
126 127 4.036852 GGCAAGAGGGATAAAGTTGCATAC 59.963 45.833 7.58 0.00 44.29 2.39
127 128 4.079787 AGGCAAGAGGGATAAAGTTGCATA 60.080 41.667 7.58 0.00 44.29 3.14
128 129 3.026694 GGCAAGAGGGATAAAGTTGCAT 58.973 45.455 7.58 0.00 44.29 3.96
129 130 2.041620 AGGCAAGAGGGATAAAGTTGCA 59.958 45.455 7.58 0.00 44.29 4.08
130 131 2.685388 GAGGCAAGAGGGATAAAGTTGC 59.315 50.000 0.00 0.00 42.25 4.17
131 132 2.939103 CGAGGCAAGAGGGATAAAGTTG 59.061 50.000 0.00 0.00 0.00 3.16
132 133 2.092914 CCGAGGCAAGAGGGATAAAGTT 60.093 50.000 0.00 0.00 0.00 2.66
133 134 1.486726 CCGAGGCAAGAGGGATAAAGT 59.513 52.381 0.00 0.00 0.00 2.66
134 135 1.486726 ACCGAGGCAAGAGGGATAAAG 59.513 52.381 0.00 0.00 0.00 1.85
135 136 1.485066 GACCGAGGCAAGAGGGATAAA 59.515 52.381 0.00 0.00 0.00 1.40
136 137 1.120530 GACCGAGGCAAGAGGGATAA 58.879 55.000 0.00 0.00 0.00 1.75
137 138 0.261991 AGACCGAGGCAAGAGGGATA 59.738 55.000 0.00 0.00 0.00 2.59
138 139 0.618968 AAGACCGAGGCAAGAGGGAT 60.619 55.000 0.00 0.00 0.00 3.85
139 140 0.836400 AAAGACCGAGGCAAGAGGGA 60.836 55.000 0.00 0.00 0.00 4.20
140 141 0.674895 CAAAGACCGAGGCAAGAGGG 60.675 60.000 0.00 0.00 0.00 4.30
141 142 0.035458 ACAAAGACCGAGGCAAGAGG 59.965 55.000 0.00 0.00 0.00 3.69
142 143 1.151668 CACAAAGACCGAGGCAAGAG 58.848 55.000 0.00 0.00 0.00 2.85
143 144 0.468226 ACACAAAGACCGAGGCAAGA 59.532 50.000 0.00 0.00 0.00 3.02
144 145 2.163818 TACACAAAGACCGAGGCAAG 57.836 50.000 0.00 0.00 0.00 4.01
145 146 2.623878 TTACACAAAGACCGAGGCAA 57.376 45.000 0.00 0.00 0.00 4.52
146 147 2.623878 TTTACACAAAGACCGAGGCA 57.376 45.000 0.00 0.00 0.00 4.75
147 148 3.974871 TTTTTACACAAAGACCGAGGC 57.025 42.857 0.00 0.00 0.00 4.70
164 165 7.410120 AAAACATTGAGTCAGACCTCTTTTT 57.590 32.000 0.00 0.00 32.50 1.94
165 166 7.775561 AGTAAAACATTGAGTCAGACCTCTTTT 59.224 33.333 0.00 1.42 32.50 2.27
166 167 7.283329 AGTAAAACATTGAGTCAGACCTCTTT 58.717 34.615 0.00 0.00 32.50 2.52
167 168 6.831976 AGTAAAACATTGAGTCAGACCTCTT 58.168 36.000 0.00 0.00 32.50 2.85
168 169 6.426646 AGTAAAACATTGAGTCAGACCTCT 57.573 37.500 0.00 0.00 32.50 3.69
169 170 6.706270 TGAAGTAAAACATTGAGTCAGACCTC 59.294 38.462 0.00 0.00 0.00 3.85
170 171 6.591935 TGAAGTAAAACATTGAGTCAGACCT 58.408 36.000 0.00 0.00 0.00 3.85
171 172 6.861065 TGAAGTAAAACATTGAGTCAGACC 57.139 37.500 0.00 0.00 0.00 3.85
172 173 6.798959 GCATGAAGTAAAACATTGAGTCAGAC 59.201 38.462 0.00 0.00 0.00 3.51
173 174 6.347644 CGCATGAAGTAAAACATTGAGTCAGA 60.348 38.462 0.00 0.00 0.00 3.27
174 175 5.791974 CGCATGAAGTAAAACATTGAGTCAG 59.208 40.000 0.00 0.00 0.00 3.51
175 176 5.468409 TCGCATGAAGTAAAACATTGAGTCA 59.532 36.000 0.00 0.00 0.00 3.41
176 177 5.927030 TCGCATGAAGTAAAACATTGAGTC 58.073 37.500 0.00 0.00 0.00 3.36
177 178 5.940192 TCGCATGAAGTAAAACATTGAGT 57.060 34.783 0.00 0.00 0.00 3.41
178 179 7.538334 TGATTTCGCATGAAGTAAAACATTGAG 59.462 33.333 0.00 0.00 35.06 3.02
179 180 7.325821 GTGATTTCGCATGAAGTAAAACATTGA 59.674 33.333 0.00 0.00 35.06 2.57
180 181 7.114670 TGTGATTTCGCATGAAGTAAAACATTG 59.885 33.333 0.00 0.00 35.06 2.82
181 182 7.144661 TGTGATTTCGCATGAAGTAAAACATT 58.855 30.769 0.00 0.00 35.06 2.71
182 183 6.676950 TGTGATTTCGCATGAAGTAAAACAT 58.323 32.000 0.00 0.00 35.06 2.71
183 184 6.066054 TGTGATTTCGCATGAAGTAAAACA 57.934 33.333 0.00 0.00 35.06 2.83
194 195 4.236935 GTTGGTTTCATGTGATTTCGCAT 58.763 39.130 0.82 0.82 46.90 4.73
195 196 3.067320 TGTTGGTTTCATGTGATTTCGCA 59.933 39.130 0.00 0.00 40.98 5.10
196 197 3.637432 TGTTGGTTTCATGTGATTTCGC 58.363 40.909 0.00 0.00 0.00 4.70
197 198 4.676471 CACTGTTGGTTTCATGTGATTTCG 59.324 41.667 0.00 0.00 0.00 3.46
198 199 5.591099 ACACTGTTGGTTTCATGTGATTTC 58.409 37.500 0.00 0.00 0.00 2.17
199 200 5.596836 ACACTGTTGGTTTCATGTGATTT 57.403 34.783 0.00 0.00 0.00 2.17
200 201 5.596836 AACACTGTTGGTTTCATGTGATT 57.403 34.783 0.00 0.00 0.00 2.57
201 202 5.596836 AAACACTGTTGGTTTCATGTGAT 57.403 34.783 0.00 0.00 33.39 3.06
209 210 3.963129 TCCAGAGAAACACTGTTGGTTT 58.037 40.909 0.00 0.00 40.91 3.27
210 211 3.644966 TCCAGAGAAACACTGTTGGTT 57.355 42.857 0.00 0.00 34.33 3.67
211 212 3.864789 ATCCAGAGAAACACTGTTGGT 57.135 42.857 0.00 0.00 33.94 3.67
212 213 3.304928 GCAATCCAGAGAAACACTGTTGG 60.305 47.826 0.00 0.00 34.04 3.77
213 214 3.316029 TGCAATCCAGAGAAACACTGTTG 59.684 43.478 0.00 0.00 34.04 3.33
214 215 3.554934 TGCAATCCAGAGAAACACTGTT 58.445 40.909 0.00 0.00 34.04 3.16
215 216 3.213206 TGCAATCCAGAGAAACACTGT 57.787 42.857 0.00 0.00 34.04 3.55
216 217 3.316029 TGTTGCAATCCAGAGAAACACTG 59.684 43.478 0.59 0.00 35.43 3.66
217 218 3.554934 TGTTGCAATCCAGAGAAACACT 58.445 40.909 0.59 0.00 0.00 3.55
218 219 3.316308 ACTGTTGCAATCCAGAGAAACAC 59.684 43.478 20.45 0.00 32.93 3.32
219 220 3.554934 ACTGTTGCAATCCAGAGAAACA 58.445 40.909 20.45 2.60 32.93 2.83
220 221 5.886960 ATACTGTTGCAATCCAGAGAAAC 57.113 39.130 20.45 0.00 32.93 2.78
221 222 5.415701 GGAATACTGTTGCAATCCAGAGAAA 59.584 40.000 20.45 6.42 32.93 2.52
222 223 4.943705 GGAATACTGTTGCAATCCAGAGAA 59.056 41.667 20.45 8.39 32.93 2.87
223 224 4.225942 AGGAATACTGTTGCAATCCAGAGA 59.774 41.667 20.45 10.24 32.93 3.10
224 225 4.521146 AGGAATACTGTTGCAATCCAGAG 58.479 43.478 20.45 1.65 32.93 3.35
225 226 4.517285 GAGGAATACTGTTGCAATCCAGA 58.483 43.478 20.45 7.56 32.93 3.86
226 227 3.629398 GGAGGAATACTGTTGCAATCCAG 59.371 47.826 15.13 14.50 34.82 3.86
227 228 3.010027 TGGAGGAATACTGTTGCAATCCA 59.990 43.478 15.13 11.78 32.10 3.41
228 229 3.620488 TGGAGGAATACTGTTGCAATCC 58.380 45.455 0.59 4.18 0.00 3.01
229 230 6.058183 AGTATGGAGGAATACTGTTGCAATC 58.942 40.000 0.59 0.00 40.95 2.67
230 231 6.006275 AGTATGGAGGAATACTGTTGCAAT 57.994 37.500 0.59 0.00 40.95 3.56
231 232 5.435686 AGTATGGAGGAATACTGTTGCAA 57.564 39.130 0.00 0.00 40.95 4.08
232 233 5.185454 CAAGTATGGAGGAATACTGTTGCA 58.815 41.667 0.00 0.00 41.49 4.08
233 234 5.186198 ACAAGTATGGAGGAATACTGTTGC 58.814 41.667 0.00 0.00 41.49 4.17
234 235 7.106239 AGAACAAGTATGGAGGAATACTGTTG 58.894 38.462 12.57 6.02 41.49 3.33
235 236 7.259088 AGAACAAGTATGGAGGAATACTGTT 57.741 36.000 0.00 5.25 41.49 3.16
236 237 6.875972 AGAACAAGTATGGAGGAATACTGT 57.124 37.500 0.00 0.00 41.49 3.55
237 238 6.037610 GCAAGAACAAGTATGGAGGAATACTG 59.962 42.308 0.00 0.00 41.49 2.74
238 239 6.116126 GCAAGAACAAGTATGGAGGAATACT 58.884 40.000 0.00 0.00 43.66 2.12
239 240 5.880332 TGCAAGAACAAGTATGGAGGAATAC 59.120 40.000 0.00 0.00 33.90 1.89
240 241 6.061022 TGCAAGAACAAGTATGGAGGAATA 57.939 37.500 0.00 0.00 0.00 1.75
241 242 4.922206 TGCAAGAACAAGTATGGAGGAAT 58.078 39.130 0.00 0.00 0.00 3.01
242 243 4.365514 TGCAAGAACAAGTATGGAGGAA 57.634 40.909 0.00 0.00 0.00 3.36
243 244 4.365514 TTGCAAGAACAAGTATGGAGGA 57.634 40.909 0.00 0.00 0.00 3.71
244 245 5.183713 TGATTTGCAAGAACAAGTATGGAGG 59.816 40.000 0.00 0.00 0.00 4.30
245 246 6.258230 TGATTTGCAAGAACAAGTATGGAG 57.742 37.500 0.00 0.00 0.00 3.86
246 247 6.647334 TTGATTTGCAAGAACAAGTATGGA 57.353 33.333 0.00 0.00 31.55 3.41
247 248 6.700960 TGTTTGATTTGCAAGAACAAGTATGG 59.299 34.615 13.69 0.00 37.87 2.74
248 249 7.697352 TGTTTGATTTGCAAGAACAAGTATG 57.303 32.000 13.69 0.00 37.87 2.39
249 250 7.326789 CGATGTTTGATTTGCAAGAACAAGTAT 59.673 33.333 17.56 13.53 37.87 2.12
250 251 6.636447 CGATGTTTGATTTGCAAGAACAAGTA 59.364 34.615 17.56 10.76 37.87 2.24
251 252 5.459762 CGATGTTTGATTTGCAAGAACAAGT 59.540 36.000 17.56 7.76 37.87 3.16
252 253 5.610982 GCGATGTTTGATTTGCAAGAACAAG 60.611 40.000 17.56 15.67 37.87 3.16
253 254 4.208873 GCGATGTTTGATTTGCAAGAACAA 59.791 37.500 17.56 13.87 37.87 2.83
254 255 3.735240 GCGATGTTTGATTTGCAAGAACA 59.265 39.130 16.59 16.59 37.87 3.18
255 256 3.983344 AGCGATGTTTGATTTGCAAGAAC 59.017 39.130 0.00 4.86 37.87 3.01
256 257 4.241590 AGCGATGTTTGATTTGCAAGAA 57.758 36.364 0.00 0.00 37.87 2.52
257 258 3.921119 AGCGATGTTTGATTTGCAAGA 57.079 38.095 0.00 0.00 37.87 3.02
258 259 4.475028 TGTAGCGATGTTTGATTTGCAAG 58.525 39.130 0.00 0.00 37.87 4.01
259 260 4.023279 ACTGTAGCGATGTTTGATTTGCAA 60.023 37.500 0.00 0.00 33.88 4.08
260 261 3.501828 ACTGTAGCGATGTTTGATTTGCA 59.498 39.130 0.00 0.00 0.00 4.08
261 262 4.083581 ACTGTAGCGATGTTTGATTTGC 57.916 40.909 0.00 0.00 0.00 3.68
262 263 5.258622 GCTACTGTAGCGATGTTTGATTTG 58.741 41.667 22.60 0.00 42.62 2.32
263 264 5.470845 GCTACTGTAGCGATGTTTGATTT 57.529 39.130 22.60 0.00 42.62 2.17
276 277 8.893219 TCATTTCATAGGATTTGCTACTGTAG 57.107 34.615 10.48 10.48 0.00 2.74
277 278 8.704668 TCTCATTTCATAGGATTTGCTACTGTA 58.295 33.333 0.00 0.00 0.00 2.74
278 279 7.568349 TCTCATTTCATAGGATTTGCTACTGT 58.432 34.615 0.00 0.00 0.00 3.55
279 280 8.442632 TTCTCATTTCATAGGATTTGCTACTG 57.557 34.615 0.00 0.00 0.00 2.74
280 281 9.638176 AATTCTCATTTCATAGGATTTGCTACT 57.362 29.630 0.00 0.00 0.00 2.57
281 282 9.890352 GAATTCTCATTTCATAGGATTTGCTAC 57.110 33.333 0.00 0.00 0.00 3.58
282 283 9.071276 GGAATTCTCATTTCATAGGATTTGCTA 57.929 33.333 5.23 0.00 0.00 3.49
283 284 7.783596 AGGAATTCTCATTTCATAGGATTTGCT 59.216 33.333 5.23 0.00 0.00 3.91
284 285 7.866393 CAGGAATTCTCATTTCATAGGATTTGC 59.134 37.037 5.23 0.00 0.00 3.68
285 286 7.866393 GCAGGAATTCTCATTTCATAGGATTTG 59.134 37.037 5.23 0.00 0.00 2.32
286 287 7.255381 CGCAGGAATTCTCATTTCATAGGATTT 60.255 37.037 5.23 0.00 0.00 2.17
287 288 6.206243 CGCAGGAATTCTCATTTCATAGGATT 59.794 38.462 5.23 0.00 0.00 3.01
288 289 5.704515 CGCAGGAATTCTCATTTCATAGGAT 59.295 40.000 5.23 0.00 0.00 3.24
289 290 5.059161 CGCAGGAATTCTCATTTCATAGGA 58.941 41.667 5.23 0.00 0.00 2.94
290 291 4.818546 ACGCAGGAATTCTCATTTCATAGG 59.181 41.667 5.23 0.00 0.00 2.57
291 292 5.998454 ACGCAGGAATTCTCATTTCATAG 57.002 39.130 5.23 0.00 0.00 2.23
292 293 6.757897 AAACGCAGGAATTCTCATTTCATA 57.242 33.333 5.23 0.00 0.00 2.15
293 294 5.649782 AAACGCAGGAATTCTCATTTCAT 57.350 34.783 5.23 0.00 0.00 2.57
294 295 5.452078 AAAACGCAGGAATTCTCATTTCA 57.548 34.783 5.23 0.00 0.00 2.69
295 296 6.152379 AGAAAAACGCAGGAATTCTCATTTC 58.848 36.000 5.23 7.18 0.00 2.17
296 297 6.089249 AGAAAAACGCAGGAATTCTCATTT 57.911 33.333 5.23 0.00 0.00 2.32
297 298 5.712152 AGAAAAACGCAGGAATTCTCATT 57.288 34.783 5.23 0.00 0.00 2.57
298 299 5.712152 AAGAAAAACGCAGGAATTCTCAT 57.288 34.783 5.23 0.00 30.43 2.90
299 300 6.429692 TCATAAGAAAAACGCAGGAATTCTCA 59.570 34.615 5.23 0.00 30.43 3.27
300 301 6.842163 TCATAAGAAAAACGCAGGAATTCTC 58.158 36.000 5.23 0.00 30.43 2.87
301 302 6.817765 TCATAAGAAAAACGCAGGAATTCT 57.182 33.333 5.23 0.00 31.98 2.40
302 303 7.867445 TTTCATAAGAAAAACGCAGGAATTC 57.133 32.000 0.00 0.00 40.61 2.17
330 331 6.850752 TTAAGGCCTCCTTTAATTTGAAGG 57.149 37.500 5.23 12.58 41.69 3.46
354 355 9.358872 TGCAATGCACGTTAATTTGAAAATATA 57.641 25.926 2.72 0.00 31.71 0.86
355 356 8.249327 TGCAATGCACGTTAATTTGAAAATAT 57.751 26.923 2.72 0.00 31.71 1.28
356 357 7.643528 TGCAATGCACGTTAATTTGAAAATA 57.356 28.000 2.72 0.00 31.71 1.40
357 358 6.536731 TGCAATGCACGTTAATTTGAAAAT 57.463 29.167 2.72 0.00 31.71 1.82
358 359 5.973651 TGCAATGCACGTTAATTTGAAAA 57.026 30.435 2.72 0.00 31.71 2.29
372 373 3.938334 AGTCAATGTATACGTGCAATGCA 59.062 39.130 2.72 2.72 35.60 3.96
373 374 4.536364 AGTCAATGTATACGTGCAATGC 57.464 40.909 0.00 0.00 0.00 3.56
445 446 9.764363 GTCATGTCATCTACAGTCCATTTTATA 57.236 33.333 0.00 0.00 42.70 0.98
446 447 8.267183 TGTCATGTCATCTACAGTCCATTTTAT 58.733 33.333 0.00 0.00 42.70 1.40
447 448 7.619965 TGTCATGTCATCTACAGTCCATTTTA 58.380 34.615 0.00 0.00 42.70 1.52
448 449 6.475504 TGTCATGTCATCTACAGTCCATTTT 58.524 36.000 0.00 0.00 42.70 1.82
449 450 6.053632 TGTCATGTCATCTACAGTCCATTT 57.946 37.500 0.00 0.00 42.70 2.32
450 451 5.682234 TGTCATGTCATCTACAGTCCATT 57.318 39.130 0.00 0.00 42.70 3.16
451 452 5.883685 ATGTCATGTCATCTACAGTCCAT 57.116 39.130 0.00 0.00 42.70 3.41
452 453 5.422145 CAATGTCATGTCATCTACAGTCCA 58.578 41.667 5.90 0.00 42.70 4.02
453 454 4.813161 CCAATGTCATGTCATCTACAGTCC 59.187 45.833 5.90 0.00 42.70 3.85
454 455 4.272018 GCCAATGTCATGTCATCTACAGTC 59.728 45.833 5.90 0.00 42.70 3.51
455 456 4.080695 AGCCAATGTCATGTCATCTACAGT 60.081 41.667 5.90 0.00 42.70 3.55
456 457 4.449131 AGCCAATGTCATGTCATCTACAG 58.551 43.478 5.90 0.00 42.70 2.74
457 458 4.492494 AGCCAATGTCATGTCATCTACA 57.508 40.909 5.90 0.00 43.86 2.74
458 459 5.605534 ACTAGCCAATGTCATGTCATCTAC 58.394 41.667 5.90 0.00 0.00 2.59
459 460 5.600069 AGACTAGCCAATGTCATGTCATCTA 59.400 40.000 5.90 3.47 35.81 1.98
460 461 4.408270 AGACTAGCCAATGTCATGTCATCT 59.592 41.667 5.90 2.51 35.81 2.90
461 462 4.701765 AGACTAGCCAATGTCATGTCATC 58.298 43.478 5.90 0.00 35.81 2.92
462 463 4.767578 AGACTAGCCAATGTCATGTCAT 57.232 40.909 0.00 0.00 35.81 3.06
463 464 4.558226 AAGACTAGCCAATGTCATGTCA 57.442 40.909 0.00 0.00 35.81 3.58
464 465 5.886960 AAAAGACTAGCCAATGTCATGTC 57.113 39.130 0.00 0.00 35.81 3.06
503 504 6.094603 GCCAATCATAATTAGCTCCACCTATG 59.905 42.308 0.00 0.00 0.00 2.23
504 505 6.183347 GCCAATCATAATTAGCTCCACCTAT 58.817 40.000 0.00 0.00 0.00 2.57
505 506 5.514834 GGCCAATCATAATTAGCTCCACCTA 60.515 44.000 0.00 0.00 31.15 3.08
506 507 4.401925 GCCAATCATAATTAGCTCCACCT 58.598 43.478 0.00 0.00 0.00 4.00
507 508 3.507622 GGCCAATCATAATTAGCTCCACC 59.492 47.826 0.00 0.00 31.15 4.61
508 509 3.189287 CGGCCAATCATAATTAGCTCCAC 59.811 47.826 2.24 0.00 31.15 4.02
509 510 3.072330 TCGGCCAATCATAATTAGCTCCA 59.928 43.478 2.24 0.00 31.15 3.86
510 511 3.674997 TCGGCCAATCATAATTAGCTCC 58.325 45.455 2.24 0.00 31.15 4.70
511 512 5.886960 ATTCGGCCAATCATAATTAGCTC 57.113 39.130 2.24 0.00 31.15 4.09
512 513 5.355350 GCTATTCGGCCAATCATAATTAGCT 59.645 40.000 2.24 0.00 31.15 3.32
513 514 5.573146 GCTATTCGGCCAATCATAATTAGC 58.427 41.667 2.24 2.63 0.00 3.09
527 528 2.663188 CGAGCCAGGCTATTCGGC 60.663 66.667 16.16 5.48 46.62 5.54
528 529 2.663188 GCGAGCCAGGCTATTCGG 60.663 66.667 16.16 2.65 39.88 4.30
529 530 1.663074 GAGCGAGCCAGGCTATTCG 60.663 63.158 16.16 15.80 41.72 3.34
530 531 1.301322 GGAGCGAGCCAGGCTATTC 60.301 63.158 16.16 12.14 41.72 1.75
531 532 1.414061 ATGGAGCGAGCCAGGCTATT 61.414 55.000 16.16 2.17 42.15 1.73
532 533 1.414061 AATGGAGCGAGCCAGGCTAT 61.414 55.000 16.16 2.95 42.15 2.97
533 534 1.626356 AAATGGAGCGAGCCAGGCTA 61.626 55.000 16.16 0.00 42.15 3.93
534 535 2.490270 AAAATGGAGCGAGCCAGGCT 62.490 55.000 16.12 16.12 42.15 4.58
535 536 2.048603 AAAATGGAGCGAGCCAGGC 61.049 57.895 1.84 1.84 42.15 4.85
536 537 1.805254 CAAAATGGAGCGAGCCAGG 59.195 57.895 3.10 0.00 42.15 4.45
537 538 1.138247 GCAAAATGGAGCGAGCCAG 59.862 57.895 3.10 0.00 42.15 4.85
538 539 1.303561 AGCAAAATGGAGCGAGCCA 60.304 52.632 0.00 0.00 43.23 4.75
539 540 1.138247 CAGCAAAATGGAGCGAGCC 59.862 57.895 0.00 0.00 35.48 4.70
540 541 1.138247 CCAGCAAAATGGAGCGAGC 59.862 57.895 0.00 0.00 43.57 5.03
541 542 0.883833 AACCAGCAAAATGGAGCGAG 59.116 50.000 0.00 0.00 43.57 5.03
557 558 1.235281 GGAACACGGGAGAGCAAACC 61.235 60.000 0.00 0.00 0.00 3.27
570 571 2.125269 CCATCGACGGGGGAACAC 60.125 66.667 0.00 0.00 0.00 3.32
571 572 2.605295 ACCATCGACGGGGGAACA 60.605 61.111 1.13 0.00 0.00 3.18
572 573 2.125269 CACCATCGACGGGGGAAC 60.125 66.667 1.13 0.00 0.00 3.62
574 575 2.758327 CTCACCATCGACGGGGGA 60.758 66.667 0.00 4.66 36.17 4.81
575 576 4.530857 GCTCACCATCGACGGGGG 62.531 72.222 0.00 0.00 0.00 5.40
640 641 3.788766 CAGCGGCGAAAACTCCCG 61.789 66.667 12.98 0.00 44.58 5.14
702 712 7.565398 TGCAGAGTATTTAGTAAGAGAGGGAAT 59.435 37.037 0.00 0.00 0.00 3.01
773 791 2.187946 CTCCATTCGCGCCCTCTT 59.812 61.111 0.00 0.00 0.00 2.85
775 793 4.537433 AGCTCCATTCGCGCCCTC 62.537 66.667 0.00 0.00 0.00 4.30
778 796 3.267860 CTCAGCTCCATTCGCGCC 61.268 66.667 0.00 0.00 0.00 6.53
829 848 3.068691 TCGAGCTTCCGTGGGAGG 61.069 66.667 0.00 0.00 31.21 4.30
886 905 2.743060 CCGATCCCATCCATCGCA 59.257 61.111 0.00 0.00 41.55 5.10
888 907 2.046892 GCCCGATCCCATCCATCG 60.047 66.667 0.00 0.00 42.36 3.84
955 977 2.437343 CCTGCGCGTTCGAGTCTTC 61.437 63.158 8.43 0.00 38.10 2.87
956 978 2.430921 CCTGCGCGTTCGAGTCTT 60.431 61.111 8.43 0.00 38.10 3.01
957 979 3.362797 TCCTGCGCGTTCGAGTCT 61.363 61.111 8.43 0.00 38.10 3.24
958 980 3.173240 GTCCTGCGCGTTCGAGTC 61.173 66.667 8.43 0.00 38.10 3.36
959 981 4.719369 GGTCCTGCGCGTTCGAGT 62.719 66.667 8.43 0.00 38.10 4.18
1101 1129 3.371097 GATCTTCAGCCGGGCGACA 62.371 63.158 14.39 4.07 0.00 4.35
1121 1149 3.541713 GCCTCCTCGGAAGGCGAT 61.542 66.667 5.03 0.00 43.02 4.58
1162 1190 1.621072 CCTGAACTCTAGGACCCTGCT 60.621 57.143 0.00 0.00 37.52 4.24
1202 1230 2.416680 GTACCTCCAGTACCTCTCGT 57.583 55.000 0.00 0.00 44.85 4.18
1337 1374 1.682854 GCTCCTCTCCATCAGTCAGAG 59.317 57.143 0.00 0.00 34.52 3.35
1338 1375 1.006400 TGCTCCTCTCCATCAGTCAGA 59.994 52.381 0.00 0.00 0.00 3.27
1494 1531 6.081872 TGTGAGAGTATACTGCTGATGATG 57.918 41.667 10.90 0.00 0.00 3.07
1539 1576 3.321648 TGCATGTCGGCAGGGTCT 61.322 61.111 2.98 0.00 39.25 3.85
1627 1664 6.417258 TGAATAGATGAAGTGAATCTGCCAA 58.583 36.000 0.00 0.00 35.92 4.52
1701 1738 1.072116 TAATTCCACGAACGTCGCGG 61.072 55.000 6.13 10.82 45.12 6.46
1762 1799 7.687941 AAGTGGGTGTAGTGAATTGAAATAG 57.312 36.000 0.00 0.00 0.00 1.73
1767 1804 4.141287 CCAAAGTGGGTGTAGTGAATTGA 58.859 43.478 0.00 0.00 32.67 2.57
1789 1826 5.432645 AGCCTAAAGCCTCTCTCAAATTAC 58.567 41.667 0.00 0.00 45.47 1.89
1794 1831 3.838317 TGTAAGCCTAAAGCCTCTCTCAA 59.162 43.478 0.00 0.00 45.47 3.02
1854 1891 4.578871 AGCCAATAAAATTCACCCTTTGC 58.421 39.130 0.00 0.00 0.00 3.68
1877 1914 7.546316 TCATTGTGTTATGCATCTTCCATTTTG 59.454 33.333 0.19 0.00 0.00 2.44
1897 1934 0.884704 GTCGGGTGTGTGCTCATTGT 60.885 55.000 0.00 0.00 0.00 2.71
1900 1937 0.320771 GAAGTCGGGTGTGTGCTCAT 60.321 55.000 0.00 0.00 0.00 2.90
1911 1948 3.068873 AGCTTAGCTATGAAGAAGTCGGG 59.931 47.826 4.30 0.00 36.99 5.14
1913 1950 5.181690 AGAGCTTAGCTATGAAGAAGTCG 57.818 43.478 6.75 0.00 39.88 4.18
1949 1986 1.003972 TCGCTTGTTTTGCTTCTGACG 60.004 47.619 0.00 0.00 0.00 4.35
1964 2001 3.134804 AGCTATGAACCAGGTATTCGCTT 59.865 43.478 0.00 0.00 0.00 4.68
1967 2004 4.260784 GCAAAGCTATGAACCAGGTATTCG 60.261 45.833 0.00 0.00 0.00 3.34
2052 2089 2.364632 CAAGGTACGATTGCCCATGAA 58.635 47.619 0.00 0.00 0.00 2.57
2072 2109 7.176165 GGCACCCATTAAGAAGTATATTAACCC 59.824 40.741 0.00 0.00 0.00 4.11
2101 2138 6.255453 ACGACTTTTCATGAACCACAATTTTG 59.745 34.615 7.89 0.00 0.00 2.44
2150 2187 1.946768 ACCACCGCGATTTCAATATGG 59.053 47.619 8.23 3.31 0.00 2.74
2192 2229 4.249638 TGGGATACAAAGGAATTCAGGG 57.750 45.455 7.93 0.00 39.74 4.45
2258 2303 7.989416 ATGATTTGTCAGCCAAAATGAAAAT 57.011 28.000 0.00 0.00 45.72 1.82
2404 2452 6.074249 GCTACTTCCATAATTTCTGTCGTAGC 60.074 42.308 0.00 0.00 39.20 3.58
2443 2491 6.553100 TGAAAAATATGGACAGGGTGAAAACT 59.447 34.615 0.00 0.00 0.00 2.66
2450 2498 5.044179 TCCATCTGAAAAATATGGACAGGGT 60.044 40.000 0.00 0.00 43.27 4.34
2481 2529 4.630894 TTTTTGTGAGTCATTGTCGCTT 57.369 36.364 0.00 0.00 0.00 4.68
2595 2649 4.326826 TGGCTACCATGATAATTGCTAGC 58.673 43.478 8.10 8.10 0.00 3.42
2604 2658 3.951563 AAAAGGCTGGCTACCATGATA 57.048 42.857 3.41 0.00 30.82 2.15
2862 2928 2.548480 GTCTTTCCCTAACTGTGCACAC 59.452 50.000 17.42 0.00 0.00 3.82
2871 2937 4.019231 ACTTCCTCCATGTCTTTCCCTAAC 60.019 45.833 0.00 0.00 0.00 2.34
3138 3204 7.634671 TCGAACTTGTGATAATCTGGTACTA 57.365 36.000 0.00 0.00 0.00 1.82
3220 3286 5.192327 AGACGAAGGTTTAGAACTCGAAA 57.808 39.130 8.73 0.00 34.41 3.46
3248 3314 6.538742 GTCCAAACTCATATTTCCAAGATCGA 59.461 38.462 0.00 0.00 0.00 3.59
3414 3480 0.320374 TCGGAAGGCGAACAATGTCT 59.680 50.000 0.00 0.00 0.00 3.41
3557 3623 1.598130 AGGTTTGTCAGCTCGCCAC 60.598 57.895 0.00 0.00 0.00 5.01
3910 3979 0.326264 ACCCACAATGAGAGGACTGC 59.674 55.000 0.00 0.00 0.00 4.40
4108 4177 0.676782 AAAAGGTGCTCGATTCCGGG 60.677 55.000 0.00 0.00 39.81 5.73
4471 4543 6.821665 CAGATTTTCGGGTGGTAATCTCTTTA 59.178 38.462 0.00 0.00 35.70 1.85
4656 4728 6.846988 AGAGAAGAGAAACTTGATTCCCTTT 58.153 36.000 0.00 0.00 39.13 3.11
4756 4828 2.839228 AGAGGTTCTGTAGGCCTTGAT 58.161 47.619 12.58 0.00 31.89 2.57
4793 4865 2.668212 TGACGCGCTTTTGAGGGG 60.668 61.111 5.73 0.00 36.55 4.79
4817 4889 6.450545 GCCTTTCTTCTAATGCAAAAGAAGT 58.549 36.000 27.47 0.00 45.81 3.01
5026 5098 5.410132 TGCTTTGCAAATTTGATGATGAAGG 59.590 36.000 22.31 5.57 34.76 3.46
5075 5174 2.038952 CACTCTTGTTCCATGGAGTCCA 59.961 50.000 15.88 15.88 36.99 4.02
5148 5247 2.584965 TGAGGGAGAAGAGACCTGAGAT 59.415 50.000 0.00 0.00 34.02 2.75
5180 5279 5.337410 CCATAGAGATACCTTGCTGATGAGG 60.337 48.000 0.00 0.00 39.02 3.86
5233 5332 5.673337 TCTTCAGGAAAAAGATTCACACG 57.327 39.130 0.00 0.00 0.00 4.49
5236 5335 7.032377 ACAGTTCTTCAGGAAAAAGATTCAC 57.968 36.000 0.00 0.00 35.51 3.18
5287 5389 0.322975 ATGCTCTTCTTCGTGGTGCT 59.677 50.000 0.00 0.00 0.00 4.40
5338 5443 3.986996 TGATGTTTGAGCTCATCTCCA 57.013 42.857 19.04 11.93 41.18 3.86
5500 5606 5.991606 CACCTTCACTGAATAGTCAACAAGA 59.008 40.000 0.00 0.00 34.07 3.02
5553 5660 6.850752 AAAACAGAGGAAGTGAAAGGAAAA 57.149 33.333 0.00 0.00 0.00 2.29
5635 5742 5.194657 GCAATACGTTTTTCCAAAACAAGC 58.805 37.500 11.58 4.88 0.00 4.01
5938 6046 5.705441 TCAAATAGCTCCAAGTGTACAAAGG 59.295 40.000 0.00 0.00 0.00 3.11
6020 6131 3.057245 GGTGGAGCAGAAAGGAAATTCAC 60.057 47.826 0.00 0.00 0.00 3.18
6200 6583 7.608376 AGCTTCTAGAAGAAATAACAAAGGTCC 59.392 37.037 32.16 11.13 40.79 4.46
6364 6747 0.390866 ATGTGCTGACAGAAGAGGCG 60.391 55.000 6.65 0.00 34.87 5.52
6399 6782 3.956199 ACAATTGATTGAGCATCCGGAAT 59.044 39.130 9.01 0.00 40.14 3.01
6404 6787 5.252969 TGCTAACAATTGATTGAGCATCC 57.747 39.130 13.59 0.00 40.48 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.