Multiple sequence alignment - TraesCS7A01G464100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G464100 chr7A 100.000 5423 0 0 1 5423 660494305 660499727 0.000000e+00 10015.0
1 TraesCS7A01G464100 chr7A 84.564 2844 193 107 997 3726 661281269 661278558 0.000000e+00 2593.0
2 TraesCS7A01G464100 chr7A 91.738 581 41 5 3870 4449 661278120 661277546 0.000000e+00 800.0
3 TraesCS7A01G464100 chr7A 78.931 636 46 49 176 802 661281986 661281430 8.640000e-93 351.0
4 TraesCS7A01G464100 chr7A 94.286 105 4 1 3767 3871 661278430 661278328 5.620000e-35 159.0
5 TraesCS7A01G464100 chr7B 92.333 5374 212 79 144 5423 627610182 627615449 0.000000e+00 7457.0
6 TraesCS7A01G464100 chr7B 85.544 2850 208 100 997 3726 628736587 628733822 0.000000e+00 2793.0
7 TraesCS7A01G464100 chr7B 91.267 584 41 6 3870 4449 628733415 628732838 0.000000e+00 787.0
8 TraesCS7A01G464100 chr7B 78.812 623 43 48 187 802 628737278 628736738 2.420000e-88 337.0
9 TraesCS7A01G464100 chr7B 91.089 101 5 3 3767 3867 628733694 628733598 3.410000e-27 134.0
10 TraesCS7A01G464100 chr7D 95.158 2664 71 22 2166 4806 571480127 571482755 0.000000e+00 4152.0
11 TraesCS7A01G464100 chr7D 84.022 3148 259 126 688 3726 571977548 571974536 0.000000e+00 2802.0
12 TraesCS7A01G464100 chr7D 87.167 2174 95 70 49 2171 571478046 571480086 0.000000e+00 2300.0
13 TraesCS7A01G464100 chr7D 94.129 511 26 2 3941 4448 571974067 571973558 0.000000e+00 774.0
14 TraesCS7A01G464100 chr7D 79.177 389 35 24 180 562 571978248 571977900 1.520000e-55 228.0
15 TraesCS7A01G464100 chr7D 96.774 62 1 1 5362 5423 571482756 571482816 9.610000e-18 102.0
16 TraesCS7A01G464100 chr7D 100.000 31 0 0 630 660 571977587 571977557 2.110000e-04 58.4
17 TraesCS7A01G464100 chr2A 95.000 80 4 0 1007 1086 708058378 708058457 5.700000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G464100 chr7A 660494305 660499727 5422 False 10015.000000 10015 100.00000 1 5423 1 chr7A.!!$F1 5422
1 TraesCS7A01G464100 chr7A 661277546 661281986 4440 True 975.750000 2593 87.37975 176 4449 4 chr7A.!!$R1 4273
2 TraesCS7A01G464100 chr7B 627610182 627615449 5267 False 7457.000000 7457 92.33300 144 5423 1 chr7B.!!$F1 5279
3 TraesCS7A01G464100 chr7B 628732838 628737278 4440 True 1012.750000 2793 86.67800 187 4449 4 chr7B.!!$R1 4262
4 TraesCS7A01G464100 chr7D 571478046 571482816 4770 False 2184.666667 4152 93.03300 49 5423 3 chr7D.!!$F1 5374
5 TraesCS7A01G464100 chr7D 571973558 571978248 4690 True 965.600000 2802 89.33200 180 4448 4 chr7D.!!$R1 4268

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 216 0.037512 CCATGCCGGAGATCTAGCTG 60.038 60.000 5.05 8.14 36.56 4.24 F
1101 1445 0.182775 ACCTGGCAAAGAAACTCGGT 59.817 50.000 0.00 0.00 0.00 4.69 F
2935 3473 0.249676 AAATTGCATGCATTGGCGGA 59.750 45.000 23.37 4.56 45.35 5.54 F
3647 4224 1.618343 AGCGCCAAAATAACCAGCTTT 59.382 42.857 2.29 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1251 1613 0.029700 CACACACACACATGCTGGTG 59.970 55.000 10.25 10.25 44.35 4.17 R
3016 3554 0.825840 CTTTTCCGGTGGCCTTCCAA 60.826 55.000 3.32 0.00 45.53 3.53 R
4074 4992 0.251354 TGTCAATGAGGAGAGGCAGC 59.749 55.000 0.00 0.00 0.00 5.25 R
5060 5988 1.271926 GGCCCAGTAGAAACCACATGT 60.272 52.381 0.00 0.00 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.170468 GGTGATATGAAGGATTGTGGGT 57.830 45.455 0.00 0.00 0.00 4.51
22 23 4.536765 GGTGATATGAAGGATTGTGGGTT 58.463 43.478 0.00 0.00 0.00 4.11
23 24 4.339247 GGTGATATGAAGGATTGTGGGTTG 59.661 45.833 0.00 0.00 0.00 3.77
24 25 5.192927 GTGATATGAAGGATTGTGGGTTGA 58.807 41.667 0.00 0.00 0.00 3.18
25 26 5.829924 GTGATATGAAGGATTGTGGGTTGAT 59.170 40.000 0.00 0.00 0.00 2.57
26 27 5.829391 TGATATGAAGGATTGTGGGTTGATG 59.171 40.000 0.00 0.00 0.00 3.07
27 28 3.805066 TGAAGGATTGTGGGTTGATGA 57.195 42.857 0.00 0.00 0.00 2.92
28 29 4.320546 TGAAGGATTGTGGGTTGATGAT 57.679 40.909 0.00 0.00 0.00 2.45
29 30 4.018490 TGAAGGATTGTGGGTTGATGATG 58.982 43.478 0.00 0.00 0.00 3.07
30 31 3.744940 AGGATTGTGGGTTGATGATGT 57.255 42.857 0.00 0.00 0.00 3.06
31 32 3.359033 AGGATTGTGGGTTGATGATGTG 58.641 45.455 0.00 0.00 0.00 3.21
32 33 2.428171 GGATTGTGGGTTGATGATGTGG 59.572 50.000 0.00 0.00 0.00 4.17
33 34 2.967745 TTGTGGGTTGATGATGTGGA 57.032 45.000 0.00 0.00 0.00 4.02
34 35 2.198827 TGTGGGTTGATGATGTGGAC 57.801 50.000 0.00 0.00 0.00 4.02
35 36 1.423161 TGTGGGTTGATGATGTGGACA 59.577 47.619 0.00 0.00 0.00 4.02
36 37 2.158549 TGTGGGTTGATGATGTGGACAA 60.159 45.455 0.00 0.00 0.00 3.18
37 38 3.091545 GTGGGTTGATGATGTGGACAAT 58.908 45.455 0.00 0.00 0.00 2.71
38 39 4.263683 TGTGGGTTGATGATGTGGACAATA 60.264 41.667 0.00 0.00 0.00 1.90
39 40 4.096382 GTGGGTTGATGATGTGGACAATAC 59.904 45.833 0.00 0.00 0.00 1.89
40 41 4.018506 TGGGTTGATGATGTGGACAATACT 60.019 41.667 0.00 0.00 0.00 2.12
41 42 5.190726 TGGGTTGATGATGTGGACAATACTA 59.809 40.000 0.00 0.00 0.00 1.82
42 43 5.760253 GGGTTGATGATGTGGACAATACTAG 59.240 44.000 0.00 0.00 0.00 2.57
43 44 6.408092 GGGTTGATGATGTGGACAATACTAGA 60.408 42.308 0.00 0.00 0.00 2.43
44 45 6.703607 GGTTGATGATGTGGACAATACTAGAG 59.296 42.308 0.00 0.00 0.00 2.43
45 46 6.410942 TGATGATGTGGACAATACTAGAGG 57.589 41.667 0.00 0.00 0.00 3.69
46 47 5.305386 TGATGATGTGGACAATACTAGAGGG 59.695 44.000 0.00 0.00 0.00 4.30
47 48 3.967326 TGATGTGGACAATACTAGAGGGG 59.033 47.826 0.00 0.00 0.00 4.79
48 49 3.769189 TGTGGACAATACTAGAGGGGA 57.231 47.619 0.00 0.00 0.00 4.81
49 50 4.069312 TGTGGACAATACTAGAGGGGAA 57.931 45.455 0.00 0.00 0.00 3.97
50 51 4.431378 TGTGGACAATACTAGAGGGGAAA 58.569 43.478 0.00 0.00 0.00 3.13
51 52 5.036916 TGTGGACAATACTAGAGGGGAAAT 58.963 41.667 0.00 0.00 0.00 2.17
52 53 6.206787 TGTGGACAATACTAGAGGGGAAATA 58.793 40.000 0.00 0.00 0.00 1.40
53 54 6.099269 TGTGGACAATACTAGAGGGGAAATAC 59.901 42.308 0.00 0.00 0.00 1.89
54 55 5.605488 TGGACAATACTAGAGGGGAAATACC 59.395 44.000 0.00 0.00 38.08 2.73
55 56 5.605488 GGACAATACTAGAGGGGAAATACCA 59.395 44.000 0.00 0.00 41.20 3.25
56 57 6.464039 GGACAATACTAGAGGGGAAATACCAC 60.464 46.154 0.00 0.00 43.70 4.16
57 58 5.968167 ACAATACTAGAGGGGAAATACCACA 59.032 40.000 0.00 0.00 46.31 4.17
58 59 6.126854 ACAATACTAGAGGGGAAATACCACAC 60.127 42.308 0.00 0.00 46.31 3.82
59 60 4.076175 ACTAGAGGGGAAATACCACACT 57.924 45.455 0.00 0.00 46.31 3.55
60 61 5.216665 ACTAGAGGGGAAATACCACACTA 57.783 43.478 0.00 0.00 46.31 2.74
61 62 5.596763 ACTAGAGGGGAAATACCACACTAA 58.403 41.667 0.00 0.00 46.31 2.24
62 63 6.210522 ACTAGAGGGGAAATACCACACTAAT 58.789 40.000 0.00 0.00 46.31 1.73
97 98 7.357471 AGATGCTCTAAAACCAAATCCCTAAT 58.643 34.615 0.00 0.00 0.00 1.73
98 99 7.841222 AGATGCTCTAAAACCAAATCCCTAATT 59.159 33.333 0.00 0.00 0.00 1.40
101 102 8.311109 TGCTCTAAAACCAAATCCCTAATTTTC 58.689 33.333 0.00 0.00 35.32 2.29
105 106 4.710197 ACCAAATCCCTAATTTTCCCCT 57.290 40.909 0.00 0.00 35.32 4.79
106 107 4.620723 ACCAAATCCCTAATTTTCCCCTC 58.379 43.478 0.00 0.00 35.32 4.30
118 119 0.397114 TTCCCCTCTCTCGCTGCATA 60.397 55.000 0.00 0.00 0.00 3.14
137 145 1.495584 ATGTGAACACACGCACGGAC 61.496 55.000 9.83 0.00 45.05 4.79
138 146 2.957489 TGAACACACGCACGGACG 60.957 61.111 0.00 0.00 39.50 4.79
203 213 1.080230 CGCCATGCCGGAGATCTAG 60.080 63.158 5.05 0.00 36.49 2.43
204 214 1.375268 GCCATGCCGGAGATCTAGC 60.375 63.158 5.05 0.00 36.56 3.42
205 215 1.825281 GCCATGCCGGAGATCTAGCT 61.825 60.000 5.05 0.00 36.56 3.32
206 216 0.037512 CCATGCCGGAGATCTAGCTG 60.038 60.000 5.05 8.14 36.56 4.24
216 226 0.881118 GATCTAGCTGCCTCTCCGAG 59.119 60.000 0.00 0.00 0.00 4.63
219 229 1.456518 TAGCTGCCTCTCCGAGCAT 60.457 57.895 0.00 0.00 38.56 3.79
495 528 2.811317 GCTGGCGAGTCGAACCTG 60.811 66.667 18.61 13.58 0.00 4.00
563 599 1.135373 CAGCTGGGTGAGTACGTACTG 60.135 57.143 31.91 17.17 36.50 2.74
681 988 4.214327 CCGCGCTCCCCTTCTCTC 62.214 72.222 5.56 0.00 0.00 3.20
684 991 3.115556 CGCTCCCCTTCTCTCTCG 58.884 66.667 0.00 0.00 0.00 4.04
799 1115 3.393426 TCATACCCCTCTCGGTAAACT 57.607 47.619 0.00 0.00 41.69 2.66
828 1148 1.685765 CAGTCGATCCCTCCACCCA 60.686 63.158 0.00 0.00 0.00 4.51
867 1196 0.382873 TTGCTGCTGCTTCTTGTGTG 59.617 50.000 17.00 0.00 40.48 3.82
873 1202 1.972872 CTGCTTCTTGTGTGGGTTCT 58.027 50.000 0.00 0.00 0.00 3.01
874 1203 2.301346 CTGCTTCTTGTGTGGGTTCTT 58.699 47.619 0.00 0.00 0.00 2.52
876 1205 1.609072 GCTTCTTGTGTGGGTTCTTCC 59.391 52.381 0.00 0.00 0.00 3.46
877 1206 2.930950 CTTCTTGTGTGGGTTCTTCCA 58.069 47.619 0.00 0.00 38.11 3.53
885 1214 1.966451 GGGTTCTTCCACTGGCGTG 60.966 63.158 3.06 3.06 40.89 5.34
886 1215 2.617274 GGTTCTTCCACTGGCGTGC 61.617 63.158 4.32 0.00 39.86 5.34
887 1216 1.891919 GTTCTTCCACTGGCGTGCA 60.892 57.895 4.32 0.00 39.86 4.57
889 1218 3.052082 CTTCCACTGGCGTGCAGG 61.052 66.667 1.01 1.01 39.86 4.85
936 1277 1.214217 TCCTCTCTTCTAGCTCCCGA 58.786 55.000 0.00 0.00 0.00 5.14
938 1279 1.408961 CCTCTCTTCTAGCTCCCGACA 60.409 57.143 0.00 0.00 0.00 4.35
1101 1445 0.182775 ACCTGGCAAAGAAACTCGGT 59.817 50.000 0.00 0.00 0.00 4.69
1214 1564 3.117552 CCTCCCTGGTAAGACCTAACT 57.882 52.381 0.00 0.00 39.58 2.24
1250 1612 8.008922 ACTCCTGTATACCCAAGTAGCTTAATA 58.991 37.037 0.00 0.00 0.00 0.98
1251 1613 8.186709 TCCTGTATACCCAAGTAGCTTAATAC 57.813 38.462 0.00 0.00 0.00 1.89
1252 1614 7.785985 TCCTGTATACCCAAGTAGCTTAATACA 59.214 37.037 0.00 0.00 0.00 2.29
1253 1615 7.871463 CCTGTATACCCAAGTAGCTTAATACAC 59.129 40.741 0.00 0.00 0.00 2.90
1255 1617 6.818281 ATACCCAAGTAGCTTAATACACCA 57.182 37.500 0.00 0.00 0.00 4.17
1256 1618 5.099042 ACCCAAGTAGCTTAATACACCAG 57.901 43.478 0.00 0.00 0.00 4.00
1257 1619 3.877508 CCCAAGTAGCTTAATACACCAGC 59.122 47.826 0.00 0.00 0.00 4.85
1258 1620 4.513442 CCAAGTAGCTTAATACACCAGCA 58.487 43.478 0.00 0.00 35.88 4.41
1259 1621 5.126067 CCAAGTAGCTTAATACACCAGCAT 58.874 41.667 0.00 0.00 35.88 3.79
1260 1622 5.008019 CCAAGTAGCTTAATACACCAGCATG 59.992 44.000 0.00 0.00 35.88 4.06
1261 1623 5.359194 AGTAGCTTAATACACCAGCATGT 57.641 39.130 0.00 0.00 35.88 3.21
1262 1624 5.118990 AGTAGCTTAATACACCAGCATGTG 58.881 41.667 0.00 4.28 42.05 3.21
1269 1631 2.407268 CACCAGCATGTGTGTGTGT 58.593 52.632 0.00 0.00 34.14 3.72
1368 1760 9.659135 TGGGGATGATTTATCTGTTTGATTTAT 57.341 29.630 0.00 0.00 36.65 1.40
1383 1778 6.658188 TTGATTTATTTTCCTTGTCCCGTT 57.342 33.333 0.00 0.00 0.00 4.44
1412 1808 9.374960 GCTGCTGATTCGTAATTATTCTTTTAG 57.625 33.333 0.00 0.00 0.00 1.85
1460 1859 9.615660 AATCCCCTTAATATATCGCATCCTATA 57.384 33.333 0.00 0.00 0.00 1.31
1475 1877 9.665719 TCGCATCCTATATCTGATATATCTCTC 57.334 37.037 15.72 6.93 0.00 3.20
1478 1880 9.958180 CATCCTATATCTGATATATCTCTCCGT 57.042 37.037 15.72 0.00 0.00 4.69
1605 2017 7.461749 AGTAAAGAAGAAATCACATCCCAGAA 58.538 34.615 0.00 0.00 0.00 3.02
1606 2018 6.830873 AAAGAAGAAATCACATCCCAGAAG 57.169 37.500 0.00 0.00 0.00 2.85
1607 2019 5.511386 AGAAGAAATCACATCCCAGAAGT 57.489 39.130 0.00 0.00 0.00 3.01
1608 2020 5.885465 AGAAGAAATCACATCCCAGAAGTT 58.115 37.500 0.00 0.00 0.00 2.66
1662 2079 6.720309 TGATTGTCCAAGGTTCTCAATCATA 58.280 36.000 12.69 0.00 44.77 2.15
1739 2162 7.350467 CAACTATGTATTTATGTGCAGCTCAG 58.650 38.462 3.14 0.00 0.00 3.35
1785 2213 7.428020 TCAGCCTATTAATTGCATGAACAATC 58.572 34.615 0.00 0.00 39.32 2.67
1794 2222 4.771590 TGCATGAACAATCCTCTTTGTC 57.228 40.909 0.00 0.00 38.85 3.18
1800 2228 4.827284 TGAACAATCCTCTTTGTCCCTTTC 59.173 41.667 0.00 0.00 38.85 2.62
1899 2342 0.613260 TGATCCGTTTCCACTCCCAG 59.387 55.000 0.00 0.00 0.00 4.45
1900 2343 0.744771 GATCCGTTTCCACTCCCAGC 60.745 60.000 0.00 0.00 0.00 4.85
1901 2344 1.201429 ATCCGTTTCCACTCCCAGCT 61.201 55.000 0.00 0.00 0.00 4.24
1931 2374 3.399330 TGAAGTGACCTCGACAATTTCC 58.601 45.455 0.00 0.00 0.00 3.13
1984 2427 2.107031 TGCATGCTTCCCATACTGCTAT 59.893 45.455 20.33 0.00 30.24 2.97
1985 2428 3.327464 TGCATGCTTCCCATACTGCTATA 59.673 43.478 20.33 0.00 30.24 1.31
1999 2442 5.161943 ACTGCTATAGAAACCGACCTTTT 57.838 39.130 3.21 0.00 0.00 2.27
2020 2471 9.658799 CCTTTTCTCCTTTTCTTTTCTTTTCTT 57.341 29.630 0.00 0.00 0.00 2.52
2134 2602 7.336679 TGATCGAAAGGCAAGAAAATATCAGAA 59.663 33.333 0.00 0.00 0.00 3.02
2148 2616 1.186200 TCAGAATGAGACCACCTCCG 58.814 55.000 0.00 0.00 42.56 4.63
2164 2638 5.337330 CCACCTCCGAATTAACTAGAACTGT 60.337 44.000 0.00 0.00 0.00 3.55
2347 2875 5.561679 GTCCCCATAACAGAAGGATATTCC 58.438 45.833 0.00 0.00 36.58 3.01
2387 2915 2.610519 CCCCTTGCTGGCCTTCTCT 61.611 63.158 3.32 0.00 0.00 3.10
2545 3073 2.428171 ACACCATGCACAAAGCCATATC 59.572 45.455 0.00 0.00 44.83 1.63
2552 3080 4.808558 TGCACAAAGCCATATCAAAAGAC 58.191 39.130 0.00 0.00 44.83 3.01
2558 3086 8.849168 CACAAAGCCATATCAAAAGACCATATA 58.151 33.333 0.00 0.00 0.00 0.86
2559 3087 9.592196 ACAAAGCCATATCAAAAGACCATATAT 57.408 29.630 0.00 0.00 0.00 0.86
2807 3338 3.181480 GGGTTTGCACATTACACACAGTT 60.181 43.478 0.00 0.00 0.00 3.16
2935 3473 0.249676 AAATTGCATGCATTGGCGGA 59.750 45.000 23.37 4.56 45.35 5.54
3016 3554 1.765314 AGAGCAACTGAATCGGGCTAT 59.235 47.619 0.00 0.00 34.44 2.97
3361 3919 7.117667 TGCACACAAACTATATATATCTTGCGG 59.882 37.037 0.00 8.20 0.00 5.69
3362 3920 7.413000 GCACACAAACTATATATATCTTGCGGG 60.413 40.741 0.00 6.77 0.00 6.13
3641 4218 4.494484 AGAATTCAAGCGCCAAAATAACC 58.506 39.130 2.29 0.00 0.00 2.85
3647 4224 1.618343 AGCGCCAAAATAACCAGCTTT 59.382 42.857 2.29 0.00 0.00 3.51
3715 4314 7.986085 ATACTGCAAGATGTCTAAAAACTGT 57.014 32.000 0.00 0.00 37.43 3.55
3717 4316 7.801716 ACTGCAAGATGTCTAAAAACTGTTA 57.198 32.000 0.00 0.00 37.43 2.41
3721 4320 6.528072 GCAAGATGTCTAAAAACTGTTATGGC 59.472 38.462 0.00 0.00 0.00 4.40
4056 4974 2.040278 AGGGAGCAGCTACAACATTGAA 59.960 45.455 7.05 0.00 0.00 2.69
4065 4983 3.304928 GCTACAACATTGAAAGTGCAGCT 60.305 43.478 0.00 0.00 0.00 4.24
4082 5000 3.602513 CTGCAACCTCGCTGCCTCT 62.603 63.158 0.00 0.00 39.13 3.69
4173 5094 0.538287 AAGTGCCCTGCTTCTCCAAC 60.538 55.000 0.00 0.00 0.00 3.77
4174 5095 1.228245 GTGCCCTGCTTCTCCAACA 60.228 57.895 0.00 0.00 0.00 3.33
4175 5096 0.823356 GTGCCCTGCTTCTCCAACAA 60.823 55.000 0.00 0.00 0.00 2.83
4176 5097 0.112995 TGCCCTGCTTCTCCAACAAT 59.887 50.000 0.00 0.00 0.00 2.71
4192 5113 0.835941 CAATCCCTCCTCTCACCCAG 59.164 60.000 0.00 0.00 0.00 4.45
4269 5190 3.823330 GAGCAGCAGCACATGGGC 61.823 66.667 13.49 13.49 45.49 5.36
4287 5208 1.865788 GCAAGGCAATCAAGGACGCA 61.866 55.000 0.00 0.00 0.00 5.24
4799 5727 5.312895 TGTGTATTAGTTTGGTCTGTGCAT 58.687 37.500 0.00 0.00 0.00 3.96
4860 5788 1.989706 GAGACTAATCTCCCGCTCCT 58.010 55.000 0.00 0.00 45.06 3.69
4898 5826 3.786553 AGGGAGGTTATATATGTCGCCA 58.213 45.455 0.00 0.00 0.00 5.69
4920 5848 6.071952 GCCATCCACTTGTTTATCTTTCTTCA 60.072 38.462 0.00 0.00 0.00 3.02
4977 5905 6.599356 AATTCTTGTTTTAATTAGGCCCGT 57.401 33.333 0.00 0.00 0.00 5.28
4984 5912 2.047002 TAATTAGGCCCGTTCCAAGC 57.953 50.000 0.00 0.00 0.00 4.01
5002 5930 4.872124 CCAAGCTTCCAATAAATCAAAGGC 59.128 41.667 0.00 0.00 0.00 4.35
5029 5957 9.810545 GCAACTGCCCATTTTAAATTACTATTA 57.189 29.630 0.00 0.00 34.31 0.98
5103 6031 5.006941 CCTTTGACCTGAATTTGCAGTTTTG 59.993 40.000 0.00 0.00 34.06 2.44
5126 6054 5.480073 TGCCAAGGAATTAAGCAGTAAACAT 59.520 36.000 0.00 0.00 0.00 2.71
5260 6189 6.070538 TCCTTTCCATGTGGACAAAAAGAAAA 60.071 34.615 11.12 0.00 45.39 2.29
5264 6193 6.467677 TCCATGTGGACAAAAAGAAAAACAA 58.532 32.000 0.00 0.00 39.78 2.83
5272 6201 9.326413 TGGACAAAAAGAAAAACAAACAAAGTA 57.674 25.926 0.00 0.00 0.00 2.24
5298 6227 5.486526 AGCTCACAAGTGGAGATTCTTTAG 58.513 41.667 0.00 0.00 34.24 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.170468 ACCCACAATCCTTCATATCACC 57.830 45.455 0.00 0.00 0.00 4.02
1 2 5.192927 TCAACCCACAATCCTTCATATCAC 58.807 41.667 0.00 0.00 0.00 3.06
2 3 5.449297 TCAACCCACAATCCTTCATATCA 57.551 39.130 0.00 0.00 0.00 2.15
3 4 6.064060 TCATCAACCCACAATCCTTCATATC 58.936 40.000 0.00 0.00 0.00 1.63
6 7 4.320546 TCATCAACCCACAATCCTTCAT 57.679 40.909 0.00 0.00 0.00 2.57
7 8 3.805066 TCATCAACCCACAATCCTTCA 57.195 42.857 0.00 0.00 0.00 3.02
8 9 4.019174 ACATCATCAACCCACAATCCTTC 58.981 43.478 0.00 0.00 0.00 3.46
10 11 3.359033 CACATCATCAACCCACAATCCT 58.641 45.455 0.00 0.00 0.00 3.24
11 12 2.428171 CCACATCATCAACCCACAATCC 59.572 50.000 0.00 0.00 0.00 3.01
12 13 3.129287 GTCCACATCATCAACCCACAATC 59.871 47.826 0.00 0.00 0.00 2.67
13 14 3.091545 GTCCACATCATCAACCCACAAT 58.908 45.455 0.00 0.00 0.00 2.71
14 15 2.158549 TGTCCACATCATCAACCCACAA 60.159 45.455 0.00 0.00 0.00 3.33
15 16 1.423161 TGTCCACATCATCAACCCACA 59.577 47.619 0.00 0.00 0.00 4.17
16 17 2.198827 TGTCCACATCATCAACCCAC 57.801 50.000 0.00 0.00 0.00 4.61
17 18 2.967745 TTGTCCACATCATCAACCCA 57.032 45.000 0.00 0.00 0.00 4.51
18 19 4.526970 AGTATTGTCCACATCATCAACCC 58.473 43.478 0.00 0.00 0.00 4.11
19 20 6.582636 TCTAGTATTGTCCACATCATCAACC 58.417 40.000 0.00 0.00 0.00 3.77
20 21 6.703607 CCTCTAGTATTGTCCACATCATCAAC 59.296 42.308 0.00 0.00 0.00 3.18
21 22 6.183361 CCCTCTAGTATTGTCCACATCATCAA 60.183 42.308 0.00 0.00 0.00 2.57
22 23 5.305386 CCCTCTAGTATTGTCCACATCATCA 59.695 44.000 0.00 0.00 0.00 3.07
23 24 5.279708 CCCCTCTAGTATTGTCCACATCATC 60.280 48.000 0.00 0.00 0.00 2.92
24 25 4.594920 CCCCTCTAGTATTGTCCACATCAT 59.405 45.833 0.00 0.00 0.00 2.45
25 26 3.967326 CCCCTCTAGTATTGTCCACATCA 59.033 47.826 0.00 0.00 0.00 3.07
26 27 4.223953 TCCCCTCTAGTATTGTCCACATC 58.776 47.826 0.00 0.00 0.00 3.06
27 28 4.280789 TCCCCTCTAGTATTGTCCACAT 57.719 45.455 0.00 0.00 0.00 3.21
28 29 3.769189 TCCCCTCTAGTATTGTCCACA 57.231 47.619 0.00 0.00 0.00 4.17
29 30 5.632034 ATTTCCCCTCTAGTATTGTCCAC 57.368 43.478 0.00 0.00 0.00 4.02
30 31 5.605488 GGTATTTCCCCTCTAGTATTGTCCA 59.395 44.000 0.00 0.00 0.00 4.02
31 32 5.605488 TGGTATTTCCCCTCTAGTATTGTCC 59.395 44.000 0.00 0.00 34.77 4.02
32 33 6.099269 TGTGGTATTTCCCCTCTAGTATTGTC 59.901 42.308 0.00 0.00 34.77 3.18
33 34 5.968167 TGTGGTATTTCCCCTCTAGTATTGT 59.032 40.000 0.00 0.00 34.77 2.71
34 35 6.099845 AGTGTGGTATTTCCCCTCTAGTATTG 59.900 42.308 0.00 0.00 34.77 1.90
35 36 6.210522 AGTGTGGTATTTCCCCTCTAGTATT 58.789 40.000 0.00 0.00 34.77 1.89
36 37 5.789535 AGTGTGGTATTTCCCCTCTAGTAT 58.210 41.667 0.00 0.00 34.77 2.12
37 38 5.216665 AGTGTGGTATTTCCCCTCTAGTA 57.783 43.478 0.00 0.00 34.77 1.82
38 39 4.076175 AGTGTGGTATTTCCCCTCTAGT 57.924 45.455 0.00 0.00 34.77 2.57
39 40 6.749036 ATTAGTGTGGTATTTCCCCTCTAG 57.251 41.667 0.00 0.00 34.77 2.43
40 41 7.847848 AGTTATTAGTGTGGTATTTCCCCTCTA 59.152 37.037 0.00 0.00 34.77 2.43
41 42 6.677076 AGTTATTAGTGTGGTATTTCCCCTCT 59.323 38.462 0.00 0.00 34.77 3.69
42 43 6.896883 AGTTATTAGTGTGGTATTTCCCCTC 58.103 40.000 0.00 0.00 34.77 4.30
43 44 6.903340 AGTTATTAGTGTGGTATTTCCCCT 57.097 37.500 0.00 0.00 34.77 4.79
84 85 4.297664 AGAGGGGAAAATTAGGGATTTGGT 59.702 41.667 0.00 0.00 37.98 3.67
97 98 1.296715 GCAGCGAGAGAGGGGAAAA 59.703 57.895 0.00 0.00 0.00 2.29
98 99 1.267574 ATGCAGCGAGAGAGGGGAAA 61.268 55.000 0.00 0.00 0.00 3.13
101 102 0.037512 CATATGCAGCGAGAGAGGGG 60.038 60.000 0.00 0.00 0.00 4.79
105 106 2.166254 TGTTCACATATGCAGCGAGAGA 59.834 45.455 1.58 0.00 0.00 3.10
106 107 2.283617 GTGTTCACATATGCAGCGAGAG 59.716 50.000 1.58 0.00 0.00 3.20
118 119 1.227409 TCCGTGCGTGTGTTCACAT 60.227 52.632 8.87 0.00 44.02 3.21
216 226 2.583593 GCGACTCTGACGGGATGC 60.584 66.667 0.00 0.00 0.00 3.91
219 229 1.006571 GTTTGCGACTCTGACGGGA 60.007 57.895 0.00 0.00 0.00 5.14
305 325 1.045911 TGGGCGGGGCATTTAATTCC 61.046 55.000 0.00 0.00 0.00 3.01
447 480 4.796231 GTGGGCGCGTGAGACGAT 62.796 66.667 8.43 0.00 46.05 3.73
478 511 2.811317 CAGGTTCGACTCGCCAGC 60.811 66.667 0.00 0.00 0.00 4.85
480 513 4.373116 GCCAGGTTCGACTCGCCA 62.373 66.667 0.00 0.00 0.00 5.69
486 519 2.358737 CAGGTGGCCAGGTTCGAC 60.359 66.667 5.11 0.00 0.00 4.20
527 560 2.566724 CAGCTGGAGAGACTTTTCCTCT 59.433 50.000 5.57 0.00 43.16 3.69
528 561 2.354604 CCAGCTGGAGAGACTTTTCCTC 60.355 54.545 29.88 0.00 37.39 3.71
563 599 0.528470 CGTATAGCTAGGCAGAGGGC 59.472 60.000 0.00 0.00 43.74 5.19
624 931 2.486191 GGCTACGGCTCTACTACTACCA 60.486 54.545 0.00 0.00 38.73 3.25
625 932 2.150390 GGCTACGGCTCTACTACTACC 58.850 57.143 0.00 0.00 38.73 3.18
626 933 3.124578 AGGCTACGGCTCTACTACTAC 57.875 52.381 0.00 0.00 38.73 2.73
665 972 3.132481 GAGAGAGAAGGGGAGCGCG 62.132 68.421 0.00 0.00 0.00 6.86
666 973 2.811799 GAGAGAGAAGGGGAGCGC 59.188 66.667 0.00 0.00 0.00 5.92
667 974 3.115556 CGAGAGAGAAGGGGAGCG 58.884 66.667 0.00 0.00 0.00 5.03
668 975 2.791868 GGCGAGAGAGAAGGGGAGC 61.792 68.421 0.00 0.00 0.00 4.70
669 976 2.485795 CGGCGAGAGAGAAGGGGAG 61.486 68.421 0.00 0.00 0.00 4.30
670 977 2.440430 CGGCGAGAGAGAAGGGGA 60.440 66.667 0.00 0.00 0.00 4.81
671 978 2.756283 ACGGCGAGAGAGAAGGGG 60.756 66.667 16.62 0.00 0.00 4.79
672 979 1.595993 TTCACGGCGAGAGAGAAGGG 61.596 60.000 16.62 0.00 0.00 3.95
673 980 0.243907 TTTCACGGCGAGAGAGAAGG 59.756 55.000 16.62 0.00 0.00 3.46
674 981 1.623359 CTTTCACGGCGAGAGAGAAG 58.377 55.000 16.62 8.43 0.00 2.85
675 982 0.388649 GCTTTCACGGCGAGAGAGAA 60.389 55.000 24.62 12.55 0.00 2.87
680 987 1.805539 CGATGCTTTCACGGCGAGA 60.806 57.895 16.62 8.96 0.00 4.04
681 988 2.697425 CGATGCTTTCACGGCGAG 59.303 61.111 16.62 5.72 0.00 5.03
813 1129 2.365105 GGTGGGTGGAGGGATCGA 60.365 66.667 0.00 0.00 0.00 3.59
848 1168 0.382873 CACACAAGAAGCAGCAGCAA 59.617 50.000 3.17 0.00 45.49 3.91
867 1196 1.966451 CACGCCAGTGGAAGAACCC 60.966 63.158 15.20 0.00 44.34 4.11
881 1210 2.583593 GATCTCGACCCTGCACGC 60.584 66.667 0.00 0.00 0.00 5.34
885 1214 3.781770 CTGCCGATCTCGACCCTGC 62.782 68.421 0.22 0.00 43.02 4.85
886 1215 2.415010 CTGCCGATCTCGACCCTG 59.585 66.667 0.22 0.00 43.02 4.45
887 1216 3.532155 GCTGCCGATCTCGACCCT 61.532 66.667 0.22 0.00 43.02 4.34
889 1218 2.279120 CTGCTGCCGATCTCGACC 60.279 66.667 0.22 0.00 43.02 4.79
892 1224 2.960659 CTGCTGCTGCCGATCTCG 60.961 66.667 13.47 0.00 38.71 4.04
916 1248 1.564818 TCGGGAGCTAGAAGAGAGGAA 59.435 52.381 0.00 0.00 0.00 3.36
936 1277 4.442612 CCCTCAGACAGATCAATCGATTGT 60.443 45.833 31.49 21.23 38.84 2.71
938 1279 3.070734 CCCCTCAGACAGATCAATCGATT 59.929 47.826 4.39 4.39 29.66 3.34
1131 1481 2.509111 CAGCCGTACATGCTCGCA 60.509 61.111 4.00 0.00 36.81 5.10
1140 1490 4.109675 ATGGTGGGGCAGCCGTAC 62.110 66.667 5.00 6.75 0.00 3.67
1211 1561 7.674772 GGGTATACAGGAGTATCTGGATTAGTT 59.325 40.741 5.01 0.00 41.15 2.24
1212 1562 7.183460 GGGTATACAGGAGTATCTGGATTAGT 58.817 42.308 5.01 0.00 41.15 2.24
1213 1563 7.182760 TGGGTATACAGGAGTATCTGGATTAG 58.817 42.308 5.01 0.00 41.15 1.73
1214 1564 7.111136 TGGGTATACAGGAGTATCTGGATTA 57.889 40.000 5.01 0.00 41.15 1.75
1251 1613 0.029700 CACACACACACATGCTGGTG 59.970 55.000 10.25 10.25 44.35 4.17
1252 1614 0.394216 ACACACACACACATGCTGGT 60.394 50.000 0.00 0.00 0.00 4.00
1253 1615 0.029700 CACACACACACACATGCTGG 59.970 55.000 0.00 0.00 0.00 4.85
1255 1617 0.734309 CACACACACACACACATGCT 59.266 50.000 0.00 0.00 0.00 3.79
1256 1618 0.451383 ACACACACACACACACATGC 59.549 50.000 0.00 0.00 0.00 4.06
1257 1619 1.468127 ACACACACACACACACACATG 59.532 47.619 0.00 0.00 0.00 3.21
1258 1620 1.737236 GACACACACACACACACACAT 59.263 47.619 0.00 0.00 0.00 3.21
1259 1621 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
1260 1622 1.438651 AGACACACACACACACACAC 58.561 50.000 0.00 0.00 0.00 3.82
1261 1623 3.535280 ATAGACACACACACACACACA 57.465 42.857 0.00 0.00 0.00 3.72
1262 1624 4.143115 GCATATAGACACACACACACACAC 60.143 45.833 0.00 0.00 0.00 3.82
1263 1625 3.993736 GCATATAGACACACACACACACA 59.006 43.478 0.00 0.00 0.00 3.72
1264 1626 4.245660 AGCATATAGACACACACACACAC 58.754 43.478 0.00 0.00 0.00 3.82
1265 1627 4.535526 AGCATATAGACACACACACACA 57.464 40.909 0.00 0.00 0.00 3.72
1266 1628 4.690748 ACAAGCATATAGACACACACACAC 59.309 41.667 0.00 0.00 0.00 3.82
1269 1631 4.690280 CACACAAGCATATAGACACACACA 59.310 41.667 0.00 0.00 0.00 3.72
1368 1760 0.747852 GCCAAACGGGACAAGGAAAA 59.252 50.000 0.00 0.00 40.01 2.29
1376 1768 1.244019 AATCAGCAGCCAAACGGGAC 61.244 55.000 0.00 0.00 40.01 4.46
1383 1778 5.822519 AGAATAATTACGAATCAGCAGCCAA 59.177 36.000 0.00 0.00 0.00 4.52
1412 1808 1.725164 GGGACGTCATCGACTTCAAAC 59.275 52.381 18.91 0.00 40.62 2.93
1460 1859 9.344772 GGTATACAACGGAGAGATATATCAGAT 57.655 37.037 15.08 0.08 0.00 2.90
1478 1880 7.215789 TGTTAGTTCCGTCAAAAGGTATACAA 58.784 34.615 5.01 0.00 0.00 2.41
1485 1887 3.556775 TCGTTGTTAGTTCCGTCAAAAGG 59.443 43.478 0.00 0.00 0.00 3.11
1526 1930 2.003301 GAGAACTGAAGATTGTCCGGC 58.997 52.381 0.00 0.00 0.00 6.13
1527 1931 2.028112 TGGAGAACTGAAGATTGTCCGG 60.028 50.000 0.00 0.00 41.36 5.14
1528 1932 2.996621 GTGGAGAACTGAAGATTGTCCG 59.003 50.000 0.00 0.00 41.36 4.79
1529 1933 4.278975 AGTGGAGAACTGAAGATTGTCC 57.721 45.455 0.00 0.00 39.42 4.02
1576 1981 9.231297 TGGGATGTGATTTCTTCTTTACTAAAG 57.769 33.333 2.49 2.49 39.88 1.85
1581 1986 7.391833 ACTTCTGGGATGTGATTTCTTCTTTAC 59.608 37.037 0.00 0.00 0.00 2.01
1605 2017 7.694784 CGCACACGGACAAATAATTAATTAACT 59.305 33.333 11.80 0.32 34.97 2.24
1606 2018 7.482428 ACGCACACGGACAAATAATTAATTAAC 59.518 33.333 11.80 2.70 46.04 2.01
1607 2019 7.528307 ACGCACACGGACAAATAATTAATTAA 58.472 30.769 11.80 0.00 46.04 1.40
1608 2020 7.074507 ACGCACACGGACAAATAATTAATTA 57.925 32.000 10.27 10.27 46.04 1.40
1662 2079 6.015180 ACCAACAGAGCAATACATTTTGATGT 60.015 34.615 0.00 0.00 38.49 3.06
1739 2162 8.293157 GGCTGAAAATTAATGGAGATAGCTAAC 58.707 37.037 0.00 0.00 0.00 2.34
1785 2213 0.960861 GCGGGAAAGGGACAAAGAGG 60.961 60.000 0.00 0.00 0.00 3.69
1794 2222 1.454479 ATGCATGAGCGGGAAAGGG 60.454 57.895 0.00 0.00 46.23 3.95
1800 2228 0.462581 ACTACACATGCATGAGCGGG 60.463 55.000 32.75 18.79 46.23 6.13
1899 2342 1.740025 GGTCACTTCAGTTATGGCAGC 59.260 52.381 0.00 0.00 0.00 5.25
1900 2343 3.265791 GAGGTCACTTCAGTTATGGCAG 58.734 50.000 0.00 0.00 0.00 4.85
1901 2344 2.353704 CGAGGTCACTTCAGTTATGGCA 60.354 50.000 0.00 0.00 0.00 4.92
1979 2422 5.416271 AGAAAAGGTCGGTTTCTATAGCA 57.584 39.130 0.00 0.00 42.22 3.49
1984 2427 4.968971 AAGGAGAAAAGGTCGGTTTCTA 57.031 40.909 0.00 0.00 43.65 2.10
1985 2428 3.859061 AAGGAGAAAAGGTCGGTTTCT 57.141 42.857 0.00 0.00 45.72 2.52
2134 2602 3.775316 AGTTAATTCGGAGGTGGTCTCAT 59.225 43.478 0.00 0.00 44.19 2.90
2164 2638 6.705302 ACTGTGCAAGAATTTGATCTCTCTA 58.295 36.000 0.00 0.00 36.36 2.43
2347 2875 2.029649 CCAAACAAACTCATGGCTCTGG 60.030 50.000 0.00 0.00 0.00 3.86
2387 2915 2.368439 GCAAGAACAGGGACATATGCA 58.632 47.619 1.58 0.00 33.00 3.96
2710 3238 4.900635 AGAGCCACATTTAATTAAGGCG 57.099 40.909 16.33 5.25 46.34 5.52
2902 3440 7.269316 TGCATGCAATTTCTGAATACAATCAT 58.731 30.769 20.30 0.00 0.00 2.45
2935 3473 4.161102 AGCTGTAGAAGTACCACTCCTTT 58.839 43.478 0.00 0.00 0.00 3.11
3016 3554 0.825840 CTTTTCCGGTGGCCTTCCAA 60.826 55.000 3.32 0.00 45.53 3.53
3300 3843 4.036518 GGGATCTCCTGCACTATCCATAT 58.963 47.826 11.81 0.00 39.79 1.78
3370 3928 4.293634 TCATTTTCAATGTCCCCTCCCTTA 59.706 41.667 0.00 0.00 0.00 2.69
3641 4218 8.088365 ACAAATTAAGGGCTAGTTAAAAAGCTG 58.912 33.333 9.47 1.99 38.80 4.24
3715 4314 9.941325 ACAATTAAAATCATGAACAAGCCATAA 57.059 25.926 0.00 0.00 0.00 1.90
3717 4316 8.723311 CAACAATTAAAATCATGAACAAGCCAT 58.277 29.630 0.00 0.00 0.00 4.40
3765 4456 7.064609 ACACATGTAAAGAATGGATCAAGTACG 59.935 37.037 0.00 0.00 0.00 3.67
3904 4821 9.952188 GGAAAATAAGTGAGTAGATTAATTGGC 57.048 33.333 0.00 0.00 0.00 4.52
3956 4873 6.040391 CCAGTCCTCCTGTTTAACATGAAAAA 59.960 38.462 0.00 0.00 39.74 1.94
4065 4983 3.596066 GAGAGGCAGCGAGGTTGCA 62.596 63.158 6.77 0.00 41.44 4.08
4074 4992 0.251354 TGTCAATGAGGAGAGGCAGC 59.749 55.000 0.00 0.00 0.00 5.25
4082 5000 4.009675 GGCAATGTAGTTGTCAATGAGGA 58.990 43.478 0.00 0.00 42.07 3.71
4173 5094 0.835941 CTGGGTGAGAGGAGGGATTG 59.164 60.000 0.00 0.00 0.00 2.67
4174 5095 0.985490 GCTGGGTGAGAGGAGGGATT 60.985 60.000 0.00 0.00 0.00 3.01
4175 5096 1.383803 GCTGGGTGAGAGGAGGGAT 60.384 63.158 0.00 0.00 0.00 3.85
4176 5097 2.039624 GCTGGGTGAGAGGAGGGA 59.960 66.667 0.00 0.00 0.00 4.20
4233 5154 1.530283 CTGATCAGCAGCCATGGGA 59.470 57.895 15.13 1.44 37.90 4.37
4269 5190 0.813184 ATGCGTCCTTGATTGCCTTG 59.187 50.000 0.00 0.00 0.00 3.61
4583 5505 1.557371 CTCCTCTGACCCTCCTTTTCC 59.443 57.143 0.00 0.00 0.00 3.13
4826 5754 9.262358 GAGATTAGTCTCCAAATGTATAACCAC 57.738 37.037 3.91 0.00 44.20 4.16
4898 5826 7.308830 GCACTGAAGAAAGATAAACAAGTGGAT 60.309 37.037 0.00 0.00 0.00 3.41
4959 5887 4.150359 TGGAACGGGCCTAATTAAAACAA 58.850 39.130 0.84 0.00 0.00 2.83
4970 5898 2.034221 GAAGCTTGGAACGGGCCT 59.966 61.111 2.10 0.00 0.00 5.19
4977 5905 6.700352 CCTTTGATTTATTGGAAGCTTGGAA 58.300 36.000 2.10 0.00 0.00 3.53
4984 5912 4.108699 TGCGCCTTTGATTTATTGGAAG 57.891 40.909 4.18 0.00 0.00 3.46
5002 5930 5.167845 AGTAATTTAAAATGGGCAGTTGCG 58.832 37.500 0.00 0.00 43.26 4.85
5029 5957 2.172293 GGGGCTGATCTGAGAAATGTCT 59.828 50.000 3.42 0.00 36.55 3.41
5060 5988 1.271926 GGCCCAGTAGAAACCACATGT 60.272 52.381 0.00 0.00 0.00 3.21
5103 6031 5.385509 TGTTTACTGCTTAATTCCTTGGC 57.614 39.130 0.00 0.00 0.00 4.52
5132 6060 9.130661 TCTTTAATGATCTGACTTTTCAAACCA 57.869 29.630 0.00 0.00 0.00 3.67
5133 6061 9.617975 CTCTTTAATGATCTGACTTTTCAAACC 57.382 33.333 0.00 0.00 0.00 3.27
5191 6120 8.745837 GCATCGGATAAACATTTAATTCAAGTG 58.254 33.333 0.00 0.00 0.00 3.16
5194 6123 9.081997 GTTGCATCGGATAAACATTTAATTCAA 57.918 29.630 9.61 0.00 0.00 2.69
5260 6189 7.915397 CACTTGTGAGCTATTACTTTGTTTGTT 59.085 33.333 0.00 0.00 0.00 2.83
5264 6193 6.296026 TCCACTTGTGAGCTATTACTTTGTT 58.704 36.000 1.89 0.00 0.00 2.83
5272 6201 5.690464 AGAATCTCCACTTGTGAGCTATT 57.310 39.130 1.89 0.00 0.00 1.73
5298 6227 9.391006 TCCCTTTCACGGCATATAAATATATTC 57.609 33.333 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.