Multiple sequence alignment - TraesCS7A01G463900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G463900 chr7A 100.000 7045 0 0 1 7045 660460360 660453316 0.000000e+00 13010.0
1 TraesCS7A01G463900 chr7A 79.932 1764 336 17 4297 6051 716417917 716419671 0.000000e+00 1280.0
2 TraesCS7A01G463900 chr7A 79.183 1297 256 13 4669 5958 716426554 716427843 0.000000e+00 887.0
3 TraesCS7A01G463900 chr7A 85.399 589 81 3 1559 2143 716415816 716416403 2.170000e-169 606.0
4 TraesCS7A01G463900 chr7A 71.606 1127 251 47 1055 2143 733368238 733367143 1.960000e-60 244.0
5 TraesCS7A01G463900 chr7A 71.149 1123 253 52 1052 2138 717841335 717842422 5.540000e-51 213.0
6 TraesCS7A01G463900 chr7A 73.973 292 66 6 1047 1336 709893205 709892922 7.470000e-20 110.0
7 TraesCS7A01G463900 chr7D 91.762 3569 176 45 466 3975 571265377 571261868 0.000000e+00 4854.0
8 TraesCS7A01G463900 chr7D 95.924 1889 74 1 4192 6080 571260813 571258928 0.000000e+00 3059.0
9 TraesCS7A01G463900 chr7D 81.583 1857 322 18 4186 6032 621296786 621298632 0.000000e+00 1517.0
10 TraesCS7A01G463900 chr7D 77.840 1778 366 21 4221 5987 621734711 621732951 0.000000e+00 1075.0
11 TraesCS7A01G463900 chr7D 79.928 1116 182 27 1048 2143 621739988 621738895 0.000000e+00 782.0
12 TraesCS7A01G463900 chr7D 87.719 627 51 12 6431 7045 571258282 571257670 0.000000e+00 708.0
13 TraesCS7A01G463900 chr7D 84.839 653 99 0 3066 3718 621295310 621295962 0.000000e+00 658.0
14 TraesCS7A01G463900 chr7D 78.142 732 146 12 2998 3722 621737855 621737131 3.000000e-123 453.0
15 TraesCS7A01G463900 chr7D 78.685 502 73 20 1 480 571266068 571265579 3.190000e-78 303.0
16 TraesCS7A01G463900 chr7D 97.701 174 2 1 4009 4182 571261867 571261696 1.490000e-76 298.0
17 TraesCS7A01G463900 chr7D 84.028 144 15 5 3980 4122 571261747 571261611 1.590000e-26 132.0
18 TraesCS7A01G463900 chr7B 91.895 3467 179 41 454 3854 627309874 627306444 0.000000e+00 4752.0
19 TraesCS7A01G463900 chr7B 96.032 1890 72 1 4192 6081 627305349 627303463 0.000000e+00 3072.0
20 TraesCS7A01G463900 chr7B 80.173 1846 341 24 4200 6033 718836179 718834347 0.000000e+00 1358.0
21 TraesCS7A01G463900 chr7B 77.709 1781 366 20 4221 5987 718146345 718148108 0.000000e+00 1061.0
22 TraesCS7A01G463900 chr7B 80.179 1120 180 27 1049 2148 718136298 718137395 0.000000e+00 800.0
23 TraesCS7A01G463900 chr7B 85.875 623 67 12 6431 7045 627302850 627302241 1.660000e-180 643.0
24 TraesCS7A01G463900 chr7B 81.333 675 120 4 3056 3730 718838033 718837365 1.730000e-150 544.0
25 TraesCS7A01G463900 chr7B 94.167 240 12 1 3943 4182 627306302 627306065 1.440000e-96 364.0
26 TraesCS7A01G463900 chr7B 75.816 521 120 4 3193 3710 750035403 750035920 7.010000e-65 259.0
27 TraesCS7A01G463900 chr7B 74.159 565 113 27 1598 2147 750031912 750032458 3.330000e-48 204.0
28 TraesCS7A01G463900 chr7B 71.634 765 183 24 1056 1809 750056837 750057578 5.610000e-41 180.0
29 TraesCS7A01G463900 chr7B 84.028 144 15 5 3980 4122 627306116 627305980 1.590000e-26 132.0
30 TraesCS7A01G463900 chr1A 80.990 1394 238 20 4262 5637 59221475 59222859 0.000000e+00 1081.0
31 TraesCS7A01G463900 chr2D 72.664 1145 233 55 1051 2144 11068224 11067109 2.470000e-79 307.0
32 TraesCS7A01G463900 chr3B 93.023 86 5 1 3853 3937 428685885 428685970 2.670000e-24 124.0
33 TraesCS7A01G463900 chr3B 82.143 84 5 7 101 174 40239350 40239433 5.900000e-06 63.9
34 TraesCS7A01G463900 chr3D 89.474 95 9 1 3850 3943 5400339 5400433 1.240000e-22 119.0
35 TraesCS7A01G463900 chr3D 83.721 86 6 8 68 150 431235940 431236020 2.730000e-09 75.0
36 TraesCS7A01G463900 chr6D 89.773 88 8 1 3854 3941 28991636 28991722 2.080000e-20 111.0
37 TraesCS7A01G463900 chr6D 97.059 34 1 0 101 134 386179344 386179377 2.740000e-04 58.4
38 TraesCS7A01G463900 chr6B 89.655 87 9 0 3853 3939 632187380 632187294 2.080000e-20 111.0
39 TraesCS7A01G463900 chr6B 89.412 85 9 0 3853 3937 137385768 137385852 2.690000e-19 108.0
40 TraesCS7A01G463900 chr4A 89.773 88 6 3 3853 3937 689197764 689197851 7.470000e-20 110.0
41 TraesCS7A01G463900 chr2B 88.506 87 10 0 3851 3937 3462994 3463080 9.660000e-19 106.0
42 TraesCS7A01G463900 chr2B 82.609 69 9 3 68 134 152501257 152501324 2.740000e-04 58.4
43 TraesCS7A01G463900 chr2A 87.097 93 11 1 3846 3938 567733289 567733380 3.480000e-18 104.0
44 TraesCS7A01G463900 chr2A 78.571 126 22 5 3291 3413 633844 633721 2.110000e-10 78.7
45 TraesCS7A01G463900 chr2A 87.500 48 4 2 83 128 143218163 143218210 4.000000e-03 54.7
46 TraesCS7A01G463900 chr1D 80.672 119 7 11 68 174 468265396 468265282 2.110000e-10 78.7
47 TraesCS7A01G463900 chr1B 83.333 84 4 6 101 174 646931207 646931124 1.270000e-07 69.4
48 TraesCS7A01G463900 chr4D 92.683 41 2 1 95 134 430790388 430790428 2.740000e-04 58.4
49 TraesCS7A01G463900 chr5B 100.000 28 0 0 101 128 272679556 272679529 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G463900 chr7A 660453316 660460360 7044 True 13010.0 13010 100.000000 1 7045 1 chr7A.!!$R1 7044
1 TraesCS7A01G463900 chr7A 716415816 716419671 3855 False 943.0 1280 82.665500 1559 6051 2 chr7A.!!$F3 4492
2 TraesCS7A01G463900 chr7A 716426554 716427843 1289 False 887.0 887 79.183000 4669 5958 1 chr7A.!!$F1 1289
3 TraesCS7A01G463900 chr7A 733367143 733368238 1095 True 244.0 244 71.606000 1055 2143 1 chr7A.!!$R3 1088
4 TraesCS7A01G463900 chr7A 717841335 717842422 1087 False 213.0 213 71.149000 1052 2138 1 chr7A.!!$F2 1086
5 TraesCS7A01G463900 chr7D 571257670 571266068 8398 True 1559.0 4854 89.303167 1 7045 6 chr7D.!!$R1 7044
6 TraesCS7A01G463900 chr7D 621295310 621298632 3322 False 1087.5 1517 83.211000 3066 6032 2 chr7D.!!$F1 2966
7 TraesCS7A01G463900 chr7D 621732951 621739988 7037 True 770.0 1075 78.636667 1048 5987 3 chr7D.!!$R2 4939
8 TraesCS7A01G463900 chr7B 627302241 627309874 7633 True 1792.6 4752 90.399400 454 7045 5 chr7B.!!$R1 6591
9 TraesCS7A01G463900 chr7B 718146345 718148108 1763 False 1061.0 1061 77.709000 4221 5987 1 chr7B.!!$F2 1766
10 TraesCS7A01G463900 chr7B 718834347 718838033 3686 True 951.0 1358 80.753000 3056 6033 2 chr7B.!!$R2 2977
11 TraesCS7A01G463900 chr7B 718136298 718137395 1097 False 800.0 800 80.179000 1049 2148 1 chr7B.!!$F1 1099
12 TraesCS7A01G463900 chr7B 750031912 750035920 4008 False 231.5 259 74.987500 1598 3710 2 chr7B.!!$F4 2112
13 TraesCS7A01G463900 chr1A 59221475 59222859 1384 False 1081.0 1081 80.990000 4262 5637 1 chr1A.!!$F1 1375
14 TraesCS7A01G463900 chr2D 11067109 11068224 1115 True 307.0 307 72.664000 1051 2144 1 chr2D.!!$R1 1093

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
941 1237 0.037697 TAAGCCAGGTACGCACACAG 60.038 55.0 0.00 0.0 0.00 3.66 F
1848 2251 0.252881 AGGAAGGAGCAGATGTGGGA 60.253 55.0 0.00 0.0 0.00 4.37 F
2967 4467 1.072266 AAGTATGGCCACCTTCACCA 58.928 50.0 8.16 0.0 37.99 4.17 F
4182 8017 0.747283 CCTGGAGGCTCTGCACATTC 60.747 60.0 15.23 0.0 0.00 2.67 F
5668 12144 0.179134 GATGACGTCGAGTTCCTGGG 60.179 60.0 11.62 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1998 2413 1.031571 TGCCATTCTTCATGTCGGGC 61.032 55.0 0.0 0.0 40.29 6.13 R
3259 6903 0.731417 CTGGAGAATTGCTGAAGCGG 59.269 55.0 0.0 0.0 45.83 5.52 R
4712 11176 0.613572 TGACCTGGCACGAGACCATA 60.614 55.0 0.0 0.0 36.36 2.74 R
5853 12329 0.099613 TCGATCTTCAGCAGCTCGAC 59.900 55.0 0.0 0.0 43.57 4.20 R
6957 13780 0.371645 CTGAAAGGATCGTGAAGCGC 59.628 55.0 0.0 0.0 41.07 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.627499 TTGCGCTTAACAGATTTTGATCT 57.373 34.783 9.73 0.00 0.00 2.75
24 25 6.735678 TGCGCTTAACAGATTTTGATCTTA 57.264 33.333 9.73 0.00 0.00 2.10
54 55 5.888982 AAGAATACACATATTCCCTCCGT 57.111 39.130 3.91 0.00 45.49 4.69
64 65 5.826208 ACATATTCCCTCCGTTCCAAATTAC 59.174 40.000 0.00 0.00 0.00 1.89
65 66 4.586306 ATTCCCTCCGTTCCAAATTACT 57.414 40.909 0.00 0.00 0.00 2.24
66 67 3.343941 TCCCTCCGTTCCAAATTACTG 57.656 47.619 0.00 0.00 0.00 2.74
67 68 2.640826 TCCCTCCGTTCCAAATTACTGT 59.359 45.455 0.00 0.00 0.00 3.55
68 69 3.839490 TCCCTCCGTTCCAAATTACTGTA 59.161 43.478 0.00 0.00 0.00 2.74
75 76 9.923143 CTCCGTTCCAAATTACTGTATATGATA 57.077 33.333 0.00 0.00 0.00 2.15
137 138 7.784633 CATTTTAATGTGTTTGTCCACCTTT 57.215 32.000 0.00 0.00 34.35 3.11
138 139 8.879342 CATTTTAATGTGTTTGTCCACCTTTA 57.121 30.769 0.00 0.00 34.35 1.85
139 140 9.487790 CATTTTAATGTGTTTGTCCACCTTTAT 57.512 29.630 0.00 0.00 34.35 1.40
149 150 8.994500 TGTTTGTCCACCTTTATATAGTCCATA 58.006 33.333 0.00 0.00 0.00 2.74
195 216 2.942604 AGCTAGGGAGGGAGTACAAA 57.057 50.000 0.00 0.00 0.00 2.83
208 229 9.293404 GGAGGGAGTACAAAAGTTACTAAATTT 57.707 33.333 0.00 0.00 29.58 1.82
229 250 9.829507 AAATTTAGGTTCACATTCAACATTTGA 57.170 25.926 0.00 0.00 38.04 2.69
232 253 9.474920 TTTAGGTTCACATTCAACATTTGATTC 57.525 29.630 0.00 0.00 39.84 2.52
265 286 2.135933 GTAACCCGATGCATGTAGCTC 58.864 52.381 2.46 0.00 45.94 4.09
274 295 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
277 298 1.877165 GTAGCTCCCGCTTGCGTAC 60.877 63.158 13.97 5.74 46.47 3.67
278 299 2.344981 TAGCTCCCGCTTGCGTACA 61.345 57.895 13.97 0.00 46.47 2.90
285 306 2.260434 GCTTGCGTACAGTCCGGA 59.740 61.111 0.00 0.00 0.00 5.14
294 315 1.345415 GTACAGTCCGGAAAAGGGTCA 59.655 52.381 5.23 0.00 0.00 4.02
297 318 1.279271 CAGTCCGGAAAAGGGTCAGAT 59.721 52.381 5.23 0.00 0.00 2.90
300 321 2.092914 GTCCGGAAAAGGGTCAGATCAT 60.093 50.000 5.23 0.00 0.00 2.45
311 332 4.728860 AGGGTCAGATCATTTTGGGTCTAT 59.271 41.667 0.00 0.00 0.00 1.98
317 338 7.552687 GTCAGATCATTTTGGGTCTATTGTACA 59.447 37.037 0.00 0.00 0.00 2.90
318 339 8.274322 TCAGATCATTTTGGGTCTATTGTACAT 58.726 33.333 0.00 0.00 0.00 2.29
319 340 8.347771 CAGATCATTTTGGGTCTATTGTACATG 58.652 37.037 0.00 0.00 0.00 3.21
321 342 6.489603 TCATTTTGGGTCTATTGTACATGGT 58.510 36.000 0.00 0.00 0.00 3.55
322 343 6.951198 TCATTTTGGGTCTATTGTACATGGTT 59.049 34.615 0.00 0.00 0.00 3.67
365 386 0.961753 CTGTTTTCAGGGCTCCAACC 59.038 55.000 0.00 0.00 43.61 3.77
375 406 2.429930 CTCCAACCCGAGGCAACA 59.570 61.111 0.00 0.00 41.41 3.33
378 409 1.528309 CCAACCCGAGGCAACAGTT 60.528 57.895 0.00 0.00 41.41 3.16
383 414 2.871453 ACCCGAGGCAACAGTTTTATT 58.129 42.857 0.00 0.00 41.41 1.40
413 444 1.988107 AGGCTCTTCTTCATGGTTGGA 59.012 47.619 0.00 0.00 0.00 3.53
426 457 8.306038 TCTTCATGGTTGGACAAAATTCTTATG 58.694 33.333 0.00 0.00 0.00 1.90
436 467 6.194796 ACAAAATTCTTATGCACGCTATGT 57.805 33.333 0.00 0.00 0.00 2.29
480 731 8.574737 AGTAATATACGAACCACCTTCTACATC 58.425 37.037 0.00 0.00 0.00 3.06
493 744 5.183904 ACCTTCTACATCAAGAAACATTGGC 59.816 40.000 0.00 0.00 35.14 4.52
497 750 7.230849 TCTACATCAAGAAACATTGGCAAAT 57.769 32.000 3.01 0.00 0.00 2.32
515 770 5.118050 GGCAAATTACGTAAAGCACTTTTCC 59.882 40.000 23.24 14.77 34.23 3.13
568 823 6.808008 ATAAAAGAGTTCATCATATGGCCG 57.192 37.500 2.13 0.00 0.00 6.13
590 845 2.100252 GTCAATGGCTGGTCAATGATGG 59.900 50.000 0.00 0.00 30.46 3.51
610 878 1.192803 AGTCCACCCTTCGGTCTTCC 61.193 60.000 0.00 0.00 42.04 3.46
613 881 0.905337 CCACCCTTCGGTCTTCCTCT 60.905 60.000 0.00 0.00 42.04 3.69
614 882 0.533032 CACCCTTCGGTCTTCCTCTC 59.467 60.000 0.00 0.00 42.04 3.20
615 883 0.410270 ACCCTTCGGTCTTCCTCTCT 59.590 55.000 0.00 0.00 38.28 3.10
616 884 1.203199 ACCCTTCGGTCTTCCTCTCTT 60.203 52.381 0.00 0.00 38.28 2.85
617 885 1.205893 CCCTTCGGTCTTCCTCTCTTG 59.794 57.143 0.00 0.00 0.00 3.02
618 886 1.896465 CCTTCGGTCTTCCTCTCTTGT 59.104 52.381 0.00 0.00 0.00 3.16
619 887 2.094442 CCTTCGGTCTTCCTCTCTTGTC 60.094 54.545 0.00 0.00 0.00 3.18
620 888 2.588464 TCGGTCTTCCTCTCTTGTCT 57.412 50.000 0.00 0.00 0.00 3.41
621 889 2.877866 TCGGTCTTCCTCTCTTGTCTT 58.122 47.619 0.00 0.00 0.00 3.01
622 890 2.820787 TCGGTCTTCCTCTCTTGTCTTC 59.179 50.000 0.00 0.00 0.00 2.87
623 891 2.823154 CGGTCTTCCTCTCTTGTCTTCT 59.177 50.000 0.00 0.00 0.00 2.85
624 892 3.257127 CGGTCTTCCTCTCTTGTCTTCTT 59.743 47.826 0.00 0.00 0.00 2.52
625 893 4.617298 CGGTCTTCCTCTCTTGTCTTCTTC 60.617 50.000 0.00 0.00 0.00 2.87
626 894 4.322424 GGTCTTCCTCTCTTGTCTTCTTCC 60.322 50.000 0.00 0.00 0.00 3.46
627 895 3.835395 TCTTCCTCTCTTGTCTTCTTCCC 59.165 47.826 0.00 0.00 0.00 3.97
628 896 2.541466 TCCTCTCTTGTCTTCTTCCCC 58.459 52.381 0.00 0.00 0.00 4.81
629 897 2.112691 TCCTCTCTTGTCTTCTTCCCCT 59.887 50.000 0.00 0.00 0.00 4.79
630 898 2.909662 CCTCTCTTGTCTTCTTCCCCTT 59.090 50.000 0.00 0.00 0.00 3.95
661 929 1.068588 GTCCATATGTAGCTGCCACGA 59.931 52.381 0.00 0.00 0.00 4.35
662 930 1.760029 TCCATATGTAGCTGCCACGAA 59.240 47.619 0.00 0.00 0.00 3.85
679 947 1.347817 GAAAGAGCGGCGACTGACTG 61.348 60.000 12.98 0.00 0.00 3.51
700 968 2.747446 GACTGAGTCACTGGTCTCTCTC 59.253 54.545 7.90 0.00 31.53 3.20
732 1000 4.271816 CCTCGGCCATCTCGTCCG 62.272 72.222 2.24 0.00 44.16 4.79
857 1146 1.482593 GACCACCAGTCTCGAATCCAT 59.517 52.381 0.00 0.00 42.69 3.41
934 1230 0.386113 GGAGCTCTAAGCCAGGTACG 59.614 60.000 14.64 0.00 43.77 3.67
939 1235 0.245539 TCTAAGCCAGGTACGCACAC 59.754 55.000 0.00 0.00 0.00 3.82
941 1237 0.037697 TAAGCCAGGTACGCACACAG 60.038 55.000 0.00 0.00 0.00 3.66
942 1238 1.754380 AAGCCAGGTACGCACACAGA 61.754 55.000 0.00 0.00 0.00 3.41
956 1252 2.542595 CACACAGAACAGTCCCGTAAAC 59.457 50.000 0.00 0.00 0.00 2.01
973 1269 2.141122 AACGGCGCCTGGTTGATTTG 62.141 55.000 26.68 7.01 0.00 2.32
1011 1307 4.545706 TAAGCCATGGCCCGCTCG 62.546 66.667 33.14 0.00 43.17 5.03
1788 2182 3.798380 CATGAGTTCATGCGGCGA 58.202 55.556 12.98 0.00 45.92 5.54
1815 2209 2.052690 ACAGGTCTACGCCGCAGAT 61.053 57.895 0.00 0.00 0.00 2.90
1848 2251 0.252881 AGGAAGGAGCAGATGTGGGA 60.253 55.000 0.00 0.00 0.00 4.37
2296 2837 9.819750 CTTTTCGAAATATGCAAATAAATGTCG 57.180 29.630 12.12 0.00 0.00 4.35
2298 2839 9.561270 TTTCGAAATATGCAAATAAATGTCGAA 57.439 25.926 6.47 14.84 40.71 3.71
2300 2841 9.729023 TCGAAATATGCAAATAAATGTCGAAAT 57.271 25.926 0.00 0.00 31.52 2.17
2328 2883 6.263392 TGTCATCTGGCAGATCTAGTTAGTAC 59.737 42.308 26.62 13.22 31.32 2.73
2330 2885 7.013846 GTCATCTGGCAGATCTAGTTAGTACTT 59.986 40.741 26.62 0.00 31.32 2.24
2331 2886 8.218488 TCATCTGGCAGATCTAGTTAGTACTTA 58.782 37.037 26.62 0.00 31.32 2.24
2332 2887 8.511321 CATCTGGCAGATCTAGTTAGTACTTAG 58.489 40.741 26.62 6.49 31.32 2.18
2334 2889 8.712103 TCTGGCAGATCTAGTTAGTACTTAGTA 58.288 37.037 14.43 0.00 35.78 1.82
2409 3065 6.407525 GCTTAATCCTTGATCACCAGAGTAGT 60.408 42.308 0.00 0.00 0.00 2.73
2410 3066 5.350504 AATCCTTGATCACCAGAGTAGTG 57.649 43.478 0.00 0.00 36.54 2.74
2414 3070 5.778241 TCCTTGATCACCAGAGTAGTGTTAA 59.222 40.000 0.00 0.00 36.58 2.01
2449 3412 6.721571 TGAGTTCTTTTCATATGACGGTTC 57.278 37.500 4.48 0.00 0.00 3.62
2461 3424 2.422597 TGACGGTTCACAATGGATGAC 58.577 47.619 0.00 0.00 0.00 3.06
2470 3442 3.640498 TCACAATGGATGACTTTTTGGCA 59.360 39.130 0.00 0.00 38.56 4.92
2492 3464 5.745227 CAAGTATTGGATGGAACACCTACT 58.255 41.667 0.00 0.00 42.73 2.57
2493 3465 5.586243 CAAGTATTGGATGGAACACCTACTG 59.414 44.000 0.00 0.00 42.73 2.74
2494 3466 6.576244 CAAGTATTGGATGGAACACCTACTGA 60.576 42.308 0.00 0.00 42.73 3.41
2495 3467 8.537466 CAAGTATTGGATGGAACACCTACTGAC 61.537 44.444 0.00 0.00 42.73 3.51
2574 3551 8.153550 AGTGATTTATCCTCATACCATCAACTC 58.846 37.037 0.00 0.00 0.00 3.01
2683 3663 9.754382 CCCAATTGGTTGATATAATTTCTGAAG 57.246 33.333 22.91 0.00 37.53 3.02
2767 3855 2.357593 AAACCTGGACCTGCCACTGG 62.358 60.000 0.00 0.00 43.33 4.00
2771 3859 1.845627 CTGGACCTGCCACTGGATGT 61.846 60.000 0.00 0.00 43.33 3.06
2820 3918 9.770097 ATATACATCAATGTCCACTAAGAACTG 57.230 33.333 0.00 0.00 41.97 3.16
2967 4467 1.072266 AAGTATGGCCACCTTCACCA 58.928 50.000 8.16 0.00 37.99 4.17
2980 4480 3.780294 ACCTTCACCATGGATGTAGCTTA 59.220 43.478 21.47 0.00 0.00 3.09
2985 4485 7.147846 CCTTCACCATGGATGTAGCTTATTTTT 60.148 37.037 21.47 0.00 0.00 1.94
3015 4515 8.622948 AAATACATAGCTAGCCAAGGAAATAC 57.377 34.615 12.13 0.00 0.00 1.89
3189 6833 7.014449 TCCAATATTAAAGGGATCGAGGACTA 58.986 38.462 0.00 0.00 0.00 2.59
3190 6834 7.678598 TCCAATATTAAAGGGATCGAGGACTAT 59.321 37.037 0.00 0.00 0.00 2.12
3326 6970 4.741342 CATTGGGAAATCAGCTCTTGTTC 58.259 43.478 0.00 0.00 0.00 3.18
3502 7149 3.719083 CTGAGCGAAAATCAGTGTCTG 57.281 47.619 0.00 0.00 39.48 3.51
3506 7153 2.143122 GCGAAAATCAGTGTCTGGTCA 58.857 47.619 0.00 0.00 31.51 4.02
3608 7255 4.093703 TCATTGTTATTACAACCGAAGCCG 59.906 41.667 0.00 0.00 46.38 5.52
3873 7655 7.421087 AACTACTCCCTCTGTTCCTAAATAC 57.579 40.000 0.00 0.00 0.00 1.89
4035 7870 7.410120 CCTGGAGGCTCTAAACATTTTAAAT 57.590 36.000 15.23 0.00 0.00 1.40
4036 7871 8.519799 CCTGGAGGCTCTAAACATTTTAAATA 57.480 34.615 15.23 0.00 0.00 1.40
4182 8017 0.747283 CCTGGAGGCTCTGCACATTC 60.747 60.000 15.23 0.00 0.00 2.67
4190 10654 4.892433 AGGCTCTGCACATTCTGTATATC 58.108 43.478 0.00 0.00 0.00 1.63
4633 11097 1.202806 TGCTGTTGACAAAGGGGAGAG 60.203 52.381 0.00 0.00 0.00 3.20
4712 11176 3.503363 CCACTGCATACAATGACACAAGT 59.497 43.478 0.00 0.00 0.00 3.16
4838 11302 2.262915 CGCACAGGGAGACACCTC 59.737 66.667 0.00 0.00 39.34 3.85
5015 11479 5.586643 GGGTGTAAAGGATGAAGATCTTGAC 59.413 44.000 14.00 0.00 0.00 3.18
5030 11494 2.146342 CTTGACAAGATGGTGAAGCGT 58.854 47.619 9.76 0.00 0.00 5.07
5055 11519 2.333014 GTCGCCTGAAGTTTCTCTCTG 58.667 52.381 0.00 0.00 0.00 3.35
5173 11637 1.364626 CCAGCGAGCATCACAAGGTC 61.365 60.000 0.00 0.00 33.17 3.85
5422 11886 0.459237 CTCGGAGTGTCTGGCATCAC 60.459 60.000 12.83 12.83 35.13 3.06
5655 12131 2.603560 GACGCCTTAAAGGAAGATGACG 59.396 50.000 0.00 0.00 37.67 4.35
5666 12142 2.520979 GAAGATGACGTCGAGTTCCTG 58.479 52.381 11.62 0.00 0.00 3.86
5668 12144 0.179134 GATGACGTCGAGTTCCTGGG 60.179 60.000 11.62 0.00 0.00 4.45
5669 12145 2.126031 GACGTCGAGTTCCTGGGC 60.126 66.667 0.00 0.00 0.00 5.36
5670 12146 2.915659 ACGTCGAGTTCCTGGGCA 60.916 61.111 0.00 0.00 0.00 5.36
5671 12147 2.342279 CGTCGAGTTCCTGGGCAA 59.658 61.111 0.00 0.00 0.00 4.52
5675 12151 0.400213 TCGAGTTCCTGGGCAACAAT 59.600 50.000 0.00 0.00 39.74 2.71
5798 12274 3.636300 AGAAGGTGAAGATCCTCGAGATG 59.364 47.826 15.71 0.00 34.42 2.90
5853 12329 1.722082 TCGAGGTCGATGAAGAGCG 59.278 57.895 0.00 0.00 44.22 5.03
5899 12375 1.515519 GCGCGTCGTACCATCTCAA 60.516 57.895 8.43 0.00 0.00 3.02
6011 12487 2.589540 CATCCCAAGGCGCCTACA 59.410 61.111 33.07 14.43 0.00 2.74
6033 12509 1.276622 GAAGCTGGAGGGACTACCAA 58.723 55.000 0.00 0.00 39.75 3.67
6041 12517 1.891150 GAGGGACTACCAAGTTCGTCA 59.109 52.381 2.44 0.00 43.05 4.35
6054 12530 0.963225 TTCGTCATGAAGGGTCGACA 59.037 50.000 18.91 0.00 31.44 4.35
6055 12531 1.182667 TCGTCATGAAGGGTCGACAT 58.817 50.000 18.91 1.75 0.00 3.06
6057 12533 1.560923 GTCATGAAGGGTCGACATCG 58.439 55.000 18.91 0.00 41.45 3.84
6058 12534 0.179111 TCATGAAGGGTCGACATCGC 60.179 55.000 18.91 4.37 39.60 4.58
6060 12536 2.582498 GAAGGGTCGACATCGCCG 60.582 66.667 18.91 0.00 39.60 6.46
6103 12579 7.532682 TTTTATTTCACTTGTTTTCACCTGC 57.467 32.000 0.00 0.00 0.00 4.85
6104 12580 2.842208 TTCACTTGTTTTCACCTGCG 57.158 45.000 0.00 0.00 0.00 5.18
6105 12581 1.021202 TCACTTGTTTTCACCTGCGG 58.979 50.000 0.00 0.00 0.00 5.69
6106 12582 0.594796 CACTTGTTTTCACCTGCGGC 60.595 55.000 0.00 0.00 0.00 6.53
6107 12583 1.370414 CTTGTTTTCACCTGCGGCG 60.370 57.895 0.51 0.51 0.00 6.46
6108 12584 1.781025 CTTGTTTTCACCTGCGGCGA 61.781 55.000 12.98 0.00 0.00 5.54
6109 12585 1.781025 TTGTTTTCACCTGCGGCGAG 61.781 55.000 12.98 5.11 0.00 5.03
6131 12607 0.529337 CGATCCAGTCGCTGCAATCT 60.529 55.000 0.00 0.00 44.33 2.40
6134 12610 0.035317 TCCAGTCGCTGCAATCTGTT 59.965 50.000 0.00 0.00 0.00 3.16
6135 12611 0.167470 CCAGTCGCTGCAATCTGTTG 59.833 55.000 0.00 0.00 38.39 3.33
6136 12612 0.167470 CAGTCGCTGCAATCTGTTGG 59.833 55.000 0.00 0.00 35.83 3.77
6137 12613 1.154150 GTCGCTGCAATCTGTTGGC 60.154 57.895 0.00 0.00 35.83 4.52
6138 12614 1.600356 TCGCTGCAATCTGTTGGCA 60.600 52.632 0.00 0.00 35.83 4.92
6220 12969 3.965539 CTGGTGCCGCCTCTTCCAG 62.966 68.421 0.00 0.00 39.41 3.86
6229 12978 2.124942 CTCTTCCAGGAAGGCCGC 60.125 66.667 26.42 0.00 39.82 6.53
6230 12979 3.689002 CTCTTCCAGGAAGGCCGCC 62.689 68.421 26.42 0.00 39.82 6.13
6268 13020 2.851102 CCCCAGGCCGGATCTGAT 60.851 66.667 21.90 0.00 36.56 2.90
6269 13021 2.746359 CCCAGGCCGGATCTGATC 59.254 66.667 21.90 9.18 36.56 2.92
6270 13022 2.746359 CCAGGCCGGATCTGATCC 59.254 66.667 23.93 23.93 46.22 3.36
6289 13056 4.440829 GGGCCAAGGAATCCGCCA 62.441 66.667 16.59 0.00 43.50 5.69
6293 13060 1.893808 CCAAGGAATCCGCCATCCG 60.894 63.158 0.00 0.00 40.78 4.18
6312 13079 1.430632 GCACCTGCCATGAACATCG 59.569 57.895 0.00 0.00 34.31 3.84
6314 13081 1.750399 ACCTGCCATGAACATCGCC 60.750 57.895 0.00 0.00 0.00 5.54
6315 13082 2.711311 CTGCCATGAACATCGCCG 59.289 61.111 0.00 0.00 0.00 6.46
6316 13083 3.459378 CTGCCATGAACATCGCCGC 62.459 63.158 0.00 0.00 0.00 6.53
6318 13085 3.940640 CCATGAACATCGCCGCCG 61.941 66.667 0.00 0.00 0.00 6.46
6319 13086 4.596180 CATGAACATCGCCGCCGC 62.596 66.667 0.00 0.00 0.00 6.53
6345 13113 7.211573 TCTTTCAGATGCAAACACATTTTGAT 58.788 30.769 0.00 0.00 0.00 2.57
6346 13114 8.358895 TCTTTCAGATGCAAACACATTTTGATA 58.641 29.630 0.00 0.00 0.00 2.15
6347 13115 9.146984 CTTTCAGATGCAAACACATTTTGATAT 57.853 29.630 0.00 0.00 0.00 1.63
6349 13117 9.791820 TTCAGATGCAAACACATTTTGATATAG 57.208 29.630 0.00 0.00 0.00 1.31
6350 13118 9.176460 TCAGATGCAAACACATTTTGATATAGA 57.824 29.630 0.00 0.00 0.00 1.98
6351 13119 9.791820 CAGATGCAAACACATTTTGATATAGAA 57.208 29.630 0.00 0.00 0.00 2.10
6373 13141 0.391661 ACCATGTTACCGCTGCTCAG 60.392 55.000 0.00 0.00 0.00 3.35
6379 13147 3.521560 TGTTACCGCTGCTCAGAATAAG 58.478 45.455 0.29 0.00 0.00 1.73
6402 13170 2.731571 GCCTGGAGTCCGCCACATA 61.732 63.158 4.30 0.00 33.52 2.29
6404 13172 0.179073 CCTGGAGTCCGCCACATAAG 60.179 60.000 4.30 0.00 33.52 1.73
6405 13173 0.824109 CTGGAGTCCGCCACATAAGA 59.176 55.000 4.30 0.00 33.52 2.10
6406 13174 1.414181 CTGGAGTCCGCCACATAAGAT 59.586 52.381 4.30 0.00 33.52 2.40
6407 13175 1.138859 TGGAGTCCGCCACATAAGATG 59.861 52.381 4.30 0.00 31.66 2.90
6408 13176 1.412710 GGAGTCCGCCACATAAGATGA 59.587 52.381 0.00 0.00 0.00 2.92
6409 13177 2.158957 GGAGTCCGCCACATAAGATGAA 60.159 50.000 0.00 0.00 0.00 2.57
6410 13178 2.866762 GAGTCCGCCACATAAGATGAAC 59.133 50.000 0.00 0.00 0.00 3.18
6411 13179 1.940613 GTCCGCCACATAAGATGAACC 59.059 52.381 0.00 0.00 0.00 3.62
6412 13180 1.837439 TCCGCCACATAAGATGAACCT 59.163 47.619 0.00 0.00 0.00 3.50
6413 13181 1.942657 CCGCCACATAAGATGAACCTG 59.057 52.381 0.00 0.00 0.00 4.00
6414 13182 1.942657 CGCCACATAAGATGAACCTGG 59.057 52.381 0.00 0.00 0.00 4.45
6415 13183 2.680805 CGCCACATAAGATGAACCTGGT 60.681 50.000 0.00 0.00 0.00 4.00
6417 13185 3.763897 GCCACATAAGATGAACCTGGTTT 59.236 43.478 14.28 0.00 0.00 3.27
6418 13186 4.947388 GCCACATAAGATGAACCTGGTTTA 59.053 41.667 14.28 10.29 0.00 2.01
6419 13187 5.066505 GCCACATAAGATGAACCTGGTTTAG 59.933 44.000 14.28 0.00 0.00 1.85
6421 13189 5.882557 CACATAAGATGAACCTGGTTTAGCT 59.117 40.000 15.41 15.41 29.42 3.32
6422 13190 6.375455 CACATAAGATGAACCTGGTTTAGCTT 59.625 38.462 29.47 29.47 40.02 3.74
6423 13191 6.948309 ACATAAGATGAACCTGGTTTAGCTTT 59.052 34.615 30.99 19.44 38.38 3.51
6424 13192 8.107095 ACATAAGATGAACCTGGTTTAGCTTTA 58.893 33.333 30.99 20.11 38.38 1.85
6425 13193 8.616076 CATAAGATGAACCTGGTTTAGCTTTAG 58.384 37.037 30.99 22.04 38.38 1.85
6426 13194 4.944317 AGATGAACCTGGTTTAGCTTTAGC 59.056 41.667 15.41 0.00 42.49 3.09
6427 13195 4.093472 TGAACCTGGTTTAGCTTTAGCA 57.907 40.909 14.28 0.55 45.16 3.49
6428 13196 4.662278 TGAACCTGGTTTAGCTTTAGCAT 58.338 39.130 14.28 0.00 45.16 3.79
6429 13197 5.076873 TGAACCTGGTTTAGCTTTAGCATT 58.923 37.500 14.28 0.00 45.16 3.56
6462 13270 8.776376 ACCATTGTCCAAAAACATTTATCATC 57.224 30.769 0.00 0.00 0.00 2.92
6465 13273 9.426837 CATTGTCCAAAAACATTTATCATCTGT 57.573 29.630 0.00 0.00 0.00 3.41
6479 13287 4.508551 TCATCTGTAGCATCCAAACCAT 57.491 40.909 0.00 0.00 0.00 3.55
6482 13290 3.808728 TCTGTAGCATCCAAACCATAGC 58.191 45.455 0.00 0.00 0.00 2.97
6490 13298 4.141869 GCATCCAAACCATAGCCTGAAATT 60.142 41.667 0.00 0.00 0.00 1.82
6507 13317 4.870426 TGAAATTTCAGAGAGCACCGTATC 59.130 41.667 16.91 0.00 32.50 2.24
6529 13339 5.816919 TCCAAATCGAACAAACTCAAGTTC 58.183 37.500 0.00 0.00 40.45 3.01
6540 13350 4.739046 AACTCAAGTTCGAAATGCAGAG 57.261 40.909 16.42 16.42 31.64 3.35
6546 13356 4.474226 AGTTCGAAATGCAGAGTTTCAC 57.526 40.909 0.00 3.74 35.77 3.18
6561 13371 6.260936 CAGAGTTTCACATAAACCAGTGTCTT 59.739 38.462 0.00 0.00 37.07 3.01
6565 13375 3.392947 TCACATAAACCAGTGTCTTGGGA 59.607 43.478 0.00 0.00 42.76 4.37
6599 13413 5.541845 GGAAACTTTCCCAGAAAATTCCTG 58.458 41.667 18.21 1.89 44.30 3.86
6622 13436 3.706086 GGTCCCAGATGGTGCATTAAAAT 59.294 43.478 0.00 0.00 34.77 1.82
6623 13437 4.162131 GGTCCCAGATGGTGCATTAAAATT 59.838 41.667 0.00 0.00 34.77 1.82
6624 13438 5.338300 GGTCCCAGATGGTGCATTAAAATTT 60.338 40.000 0.00 0.00 34.77 1.82
6628 13442 8.378565 TCCCAGATGGTGCATTAAAATTTAAAA 58.621 29.630 2.03 0.00 34.77 1.52
6629 13443 9.007901 CCCAGATGGTGCATTAAAATTTAAAAA 57.992 29.630 2.03 0.00 0.00 1.94
6703 13517 3.191371 ACTGCTCCATCCAAACGAAATTC 59.809 43.478 0.00 0.00 0.00 2.17
6706 13520 3.006940 CTCCATCCAAACGAAATTCCGA 58.993 45.455 0.00 0.00 0.00 4.55
6762 13579 3.154710 CACCACTCGCCTACATAGGATA 58.845 50.000 9.25 0.00 46.63 2.59
6795 13614 7.308435 CCAGACAGAGCCTTTAAAAATTAGTG 58.692 38.462 0.00 0.00 0.00 2.74
6796 13615 6.803807 CAGACAGAGCCTTTAAAAATTAGTGC 59.196 38.462 0.00 0.00 0.00 4.40
6797 13616 6.025749 ACAGAGCCTTTAAAAATTAGTGCC 57.974 37.500 0.00 0.00 0.00 5.01
6802 13621 6.099341 AGCCTTTAAAAATTAGTGCCGATTG 58.901 36.000 0.00 0.00 0.00 2.67
6874 13693 2.554142 CTCATCTGGTTGCGCATAGAA 58.446 47.619 12.75 0.00 0.00 2.10
6928 13749 2.684001 ACGGACCTCGATAAATTGCA 57.316 45.000 0.00 0.00 42.43 4.08
6941 13764 0.542467 AATTGCAGCCCATGTGACCA 60.542 50.000 0.00 0.00 0.00 4.02
6943 13766 3.446570 GCAGCCCATGTGACCAGC 61.447 66.667 0.00 0.00 0.00 4.85
6985 13808 2.948979 ACGATCCTTTCAGCACAAACAA 59.051 40.909 0.00 0.00 0.00 2.83
6988 13811 3.781079 TCCTTTCAGCACAAACAACAG 57.219 42.857 0.00 0.00 0.00 3.16
7013 13836 3.317150 GGCAACAACAGTAAGAAATGGC 58.683 45.455 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 9.100197 AGGGAATATGTGTATTCTTTGGTTTTT 57.900 29.630 7.78 0.00 43.68 1.94
29 30 5.470098 CGGAGGGAATATGTGTATTCTTTGG 59.530 44.000 7.78 0.00 43.68 3.28
39 40 3.275617 TTGGAACGGAGGGAATATGTG 57.724 47.619 0.00 0.00 0.00 3.21
113 114 7.784633 AAAGGTGGACAAACACATTAAAATG 57.215 32.000 1.13 1.13 43.63 2.32
119 120 9.174166 GACTATATAAAGGTGGACAAACACATT 57.826 33.333 0.00 0.00 46.00 2.71
120 121 7.773690 GGACTATATAAAGGTGGACAAACACAT 59.226 37.037 0.00 0.00 43.08 3.21
124 125 9.269453 GTATGGACTATATAAAGGTGGACAAAC 57.731 37.037 0.00 0.00 0.00 2.93
126 127 8.555896 TGTATGGACTATATAAAGGTGGACAA 57.444 34.615 0.00 0.00 0.00 3.18
127 128 8.008332 TCTGTATGGACTATATAAAGGTGGACA 58.992 37.037 0.00 0.00 0.00 4.02
128 129 8.418597 TCTGTATGGACTATATAAAGGTGGAC 57.581 38.462 0.00 0.00 0.00 4.02
129 130 9.442062 TTTCTGTATGGACTATATAAAGGTGGA 57.558 33.333 0.00 0.00 0.00 4.02
140 141 8.647796 TGTTTCGGATATTTCTGTATGGACTAT 58.352 33.333 0.00 0.00 0.00 2.12
141 142 8.014070 TGTTTCGGATATTTCTGTATGGACTA 57.986 34.615 0.00 0.00 0.00 2.59
142 143 6.884832 TGTTTCGGATATTTCTGTATGGACT 58.115 36.000 0.00 0.00 0.00 3.85
160 161 9.751542 CCTCCCTAGCTATTATAATATGTTTCG 57.248 37.037 5.64 0.00 0.00 3.46
178 179 5.720520 AGTAACTTTTGTACTCCCTCCCTAG 59.279 44.000 0.00 0.00 0.00 3.02
179 180 5.658474 AGTAACTTTTGTACTCCCTCCCTA 58.342 41.667 0.00 0.00 0.00 3.53
181 182 4.904895 AGTAACTTTTGTACTCCCTCCC 57.095 45.455 0.00 0.00 0.00 4.30
208 229 8.175925 TGAATCAAATGTTGAATGTGAACCTA 57.824 30.769 0.00 0.00 43.95 3.08
229 250 7.483580 TCGGGTTACCCATTTAAATTTGAAT 57.516 32.000 21.58 1.19 45.83 2.57
232 253 5.522097 GCATCGGGTTACCCATTTAAATTTG 59.478 40.000 21.58 0.00 45.83 2.32
245 266 2.135933 GAGCTACATGCATCGGGTTAC 58.864 52.381 0.00 0.00 45.94 2.50
246 267 1.070134 GGAGCTACATGCATCGGGTTA 59.930 52.381 0.00 0.00 45.94 2.85
265 286 2.813908 GGACTGTACGCAAGCGGG 60.814 66.667 19.30 8.18 44.69 6.13
274 295 1.345415 TGACCCTTTTCCGGACTGTAC 59.655 52.381 1.83 0.00 0.00 2.90
277 298 0.685097 TCTGACCCTTTTCCGGACTG 59.315 55.000 1.83 0.00 0.00 3.51
278 299 1.555533 GATCTGACCCTTTTCCGGACT 59.444 52.381 1.83 0.00 0.00 3.85
285 306 4.492646 ACCCAAAATGATCTGACCCTTTT 58.507 39.130 0.00 0.00 0.00 2.27
294 315 7.503566 CCATGTACAATAGACCCAAAATGATCT 59.496 37.037 0.00 0.00 0.00 2.75
297 318 6.489603 ACCATGTACAATAGACCCAAAATGA 58.510 36.000 0.00 0.00 0.00 2.57
300 321 7.604657 AAAACCATGTACAATAGACCCAAAA 57.395 32.000 0.00 0.00 0.00 2.44
322 343 6.437162 AGCCTCCTGTAGAAATGCATTAAAAA 59.563 34.615 13.39 0.00 0.00 1.94
326 347 4.454678 CAGCCTCCTGTAGAAATGCATTA 58.545 43.478 13.39 0.00 34.31 1.90
327 348 3.285484 CAGCCTCCTGTAGAAATGCATT 58.715 45.455 5.99 5.99 34.31 3.56
328 349 2.928334 CAGCCTCCTGTAGAAATGCAT 58.072 47.619 0.00 0.00 34.31 3.96
341 362 0.962855 GAGCCCTGAAAACAGCCTCC 60.963 60.000 0.00 0.00 0.00 4.30
356 377 4.344865 TTGCCTCGGGTTGGAGCC 62.345 66.667 0.00 0.00 32.57 4.70
357 378 3.056328 GTTGCCTCGGGTTGGAGC 61.056 66.667 0.00 0.00 32.57 4.70
358 379 1.672356 CTGTTGCCTCGGGTTGGAG 60.672 63.158 0.00 0.00 0.00 3.86
360 381 1.106944 AAACTGTTGCCTCGGGTTGG 61.107 55.000 0.00 0.00 0.00 3.77
361 382 0.744281 AAAACTGTTGCCTCGGGTTG 59.256 50.000 0.00 0.00 0.00 3.77
362 383 2.351706 TAAAACTGTTGCCTCGGGTT 57.648 45.000 0.00 0.00 0.00 4.11
363 384 2.556622 CAATAAAACTGTTGCCTCGGGT 59.443 45.455 0.00 0.00 0.00 5.28
364 385 2.671070 GCAATAAAACTGTTGCCTCGGG 60.671 50.000 0.00 0.00 43.65 5.14
365 386 2.595386 GCAATAAAACTGTTGCCTCGG 58.405 47.619 0.00 0.00 43.65 4.63
387 418 2.376109 CATGAAGAAGAGCCTTGCCAT 58.624 47.619 0.00 0.00 0.00 4.40
388 419 1.615116 CCATGAAGAAGAGCCTTGCCA 60.615 52.381 0.00 0.00 0.00 4.92
399 430 6.729690 AGAATTTTGTCCAACCATGAAGAA 57.270 33.333 0.00 0.00 0.00 2.52
413 444 6.194796 ACATAGCGTGCATAAGAATTTTGT 57.805 33.333 0.00 0.00 29.32 2.83
480 731 7.630470 TTACGTAATTTGCCAATGTTTCTTG 57.370 32.000 3.29 0.00 0.00 3.02
493 744 6.915843 AGTGGAAAAGTGCTTTACGTAATTTG 59.084 34.615 9.18 4.19 29.25 2.32
497 750 5.412526 CAGTGGAAAAGTGCTTTACGTAA 57.587 39.130 3.29 3.29 29.25 3.18
515 770 3.684305 TCATTTCTTATCACCGTGCAGTG 59.316 43.478 0.00 0.00 39.20 3.66
547 802 3.885297 CCGGCCATATGATGAACTCTTTT 59.115 43.478 2.24 0.00 0.00 2.27
556 811 1.814394 CCATTGACCGGCCATATGATG 59.186 52.381 0.00 0.00 0.00 3.07
568 823 1.838112 TCATTGACCAGCCATTGACC 58.162 50.000 0.00 0.00 0.00 4.02
610 878 3.055458 GGAAGGGGAAGAAGACAAGAGAG 60.055 52.174 0.00 0.00 0.00 3.20
613 881 2.991580 AGGAAGGGGAAGAAGACAAGA 58.008 47.619 0.00 0.00 0.00 3.02
614 882 3.329225 AGAAGGAAGGGGAAGAAGACAAG 59.671 47.826 0.00 0.00 0.00 3.16
615 883 3.327439 AGAAGGAAGGGGAAGAAGACAA 58.673 45.455 0.00 0.00 0.00 3.18
616 884 2.907042 GAGAAGGAAGGGGAAGAAGACA 59.093 50.000 0.00 0.00 0.00 3.41
617 885 2.237643 GGAGAAGGAAGGGGAAGAAGAC 59.762 54.545 0.00 0.00 0.00 3.01
618 886 2.552367 GGAGAAGGAAGGGGAAGAAGA 58.448 52.381 0.00 0.00 0.00 2.87
619 887 1.208293 CGGAGAAGGAAGGGGAAGAAG 59.792 57.143 0.00 0.00 0.00 2.85
620 888 1.276622 CGGAGAAGGAAGGGGAAGAA 58.723 55.000 0.00 0.00 0.00 2.52
621 889 0.116541 ACGGAGAAGGAAGGGGAAGA 59.883 55.000 0.00 0.00 0.00 2.87
622 890 0.250513 CACGGAGAAGGAAGGGGAAG 59.749 60.000 0.00 0.00 0.00 3.46
623 891 0.473117 ACACGGAGAAGGAAGGGGAA 60.473 55.000 0.00 0.00 0.00 3.97
624 892 0.903454 GACACGGAGAAGGAAGGGGA 60.903 60.000 0.00 0.00 0.00 4.81
625 893 1.597461 GACACGGAGAAGGAAGGGG 59.403 63.158 0.00 0.00 0.00 4.79
626 894 1.192146 TGGACACGGAGAAGGAAGGG 61.192 60.000 0.00 0.00 0.00 3.95
627 895 0.905357 ATGGACACGGAGAAGGAAGG 59.095 55.000 0.00 0.00 0.00 3.46
628 896 3.133003 ACATATGGACACGGAGAAGGAAG 59.867 47.826 7.80 0.00 0.00 3.46
629 897 3.104512 ACATATGGACACGGAGAAGGAA 58.895 45.455 7.80 0.00 0.00 3.36
630 898 2.747177 ACATATGGACACGGAGAAGGA 58.253 47.619 7.80 0.00 0.00 3.36
661 929 1.373497 CAGTCAGTCGCCGCTCTTT 60.373 57.895 0.00 0.00 0.00 2.52
662 930 2.259818 CAGTCAGTCGCCGCTCTT 59.740 61.111 0.00 0.00 0.00 2.85
679 947 2.747446 GAGAGAGACCAGTGACTCAGTC 59.253 54.545 15.77 0.00 36.00 3.51
732 1000 2.025156 CTGCGATGGATTTGCGGC 59.975 61.111 0.00 0.00 37.57 6.53
821 1109 2.124693 GTCTCCCTCTCTCGCCTGG 61.125 68.421 0.00 0.00 0.00 4.45
857 1146 0.324614 TTGCGCAGAGAGGGAAATGA 59.675 50.000 11.31 0.00 0.00 2.57
934 1230 0.032952 TACGGGACTGTTCTGTGTGC 59.967 55.000 10.90 0.00 0.00 4.57
956 1252 1.656818 ATCAAATCAACCAGGCGCCG 61.657 55.000 23.20 16.10 0.00 6.46
973 1269 6.249050 GCTTAAAATCGGCATTTTTGCAAATC 59.751 34.615 13.65 2.95 41.56 2.17
1011 1307 1.135333 GGTTCTCTCGATCTGTGGGAC 59.865 57.143 0.00 0.00 0.00 4.46
1014 1310 1.470632 GCTGGTTCTCTCGATCTGTGG 60.471 57.143 0.00 0.00 0.00 4.17
1746 2140 4.142004 GGATTGAAAGGATGCATGAGCTTT 60.142 41.667 2.46 0.00 42.74 3.51
1788 2182 1.743772 GCGTAGACCTGTGCCATGAAT 60.744 52.381 0.00 0.00 0.00 2.57
1815 2209 1.221466 CTTCCTTGTCGACGCAAGCA 61.221 55.000 19.84 8.44 43.17 3.91
1848 2251 5.630121 TCCATTTTTGTGAGGACATGTACT 58.370 37.500 11.38 11.38 30.13 2.73
1998 2413 1.031571 TGCCATTCTTCATGTCGGGC 61.032 55.000 0.00 0.00 40.29 6.13
2001 2416 1.063616 CAGCTGCCATTCTTCATGTCG 59.936 52.381 0.00 0.00 0.00 4.35
2295 2836 5.699915 AGATCTGCCAGATGACAATATTTCG 59.300 40.000 12.92 0.00 34.53 3.46
2296 2837 7.877097 ACTAGATCTGCCAGATGACAATATTTC 59.123 37.037 12.92 0.00 34.53 2.17
2298 2839 7.313740 ACTAGATCTGCCAGATGACAATATT 57.686 36.000 12.92 0.00 34.53 1.28
2300 2841 6.737720 AACTAGATCTGCCAGATGACAATA 57.262 37.500 12.92 0.00 34.53 1.90
2409 3065 5.238432 AGAACTCATTGTTGATGCGTTAACA 59.762 36.000 11.89 11.89 42.19 2.41
2410 3066 5.689819 AGAACTCATTGTTGATGCGTTAAC 58.310 37.500 6.62 6.62 42.19 2.01
2414 3070 4.836125 AAAGAACTCATTGTTGATGCGT 57.164 36.364 0.00 0.00 39.30 5.24
2444 3407 4.503741 AAAAGTCATCCATTGTGAACCG 57.496 40.909 0.00 0.00 0.00 4.44
2449 3412 3.992643 TGCCAAAAAGTCATCCATTGTG 58.007 40.909 0.00 0.00 0.00 3.33
2461 3424 5.404466 TCCATCCAATACTTGCCAAAAAG 57.596 39.130 0.00 0.00 0.00 2.27
2470 3442 5.487488 TCAGTAGGTGTTCCATCCAATACTT 59.513 40.000 0.00 0.00 35.89 2.24
2478 3450 3.767673 TGTAGGTCAGTAGGTGTTCCATC 59.232 47.826 0.00 0.00 35.89 3.51
2492 3464 8.373048 CAACAAAGTAATACAGTTGTAGGTCA 57.627 34.615 11.25 0.00 35.93 4.02
2737 3798 1.597663 GTCCAGGTTTCGTGTTCACAG 59.402 52.381 3.87 0.00 0.00 3.66
2820 3918 7.462109 TGAACATAATTGTTTGTGAAACTGC 57.538 32.000 0.00 0.00 46.01 4.40
2861 3959 7.942990 TCGGTTAAACATGTGAATTAAGGTTT 58.057 30.769 0.00 0.00 33.53 3.27
2967 4467 8.506168 TTTCTCGAAAAATAAGCTACATCCAT 57.494 30.769 0.00 0.00 0.00 3.41
2980 4480 7.715249 TGGCTAGCTATGTATTTCTCGAAAAAT 59.285 33.333 15.72 1.76 33.56 1.82
2985 4485 5.279006 CCTTGGCTAGCTATGTATTTCTCGA 60.279 44.000 15.72 0.00 0.00 4.04
3189 6833 8.704668 GTCCAACAAGGGGATAATTTTTCATAT 58.295 33.333 0.00 0.00 36.67 1.78
3190 6834 7.147983 CGTCCAACAAGGGGATAATTTTTCATA 60.148 37.037 0.00 0.00 36.67 2.15
3259 6903 0.731417 CTGGAGAATTGCTGAAGCGG 59.269 55.000 0.00 0.00 45.83 5.52
3326 6970 6.311445 AGCATTCTGTCATAGTACAAGTTTCG 59.689 38.462 0.00 0.00 0.00 3.46
3502 7149 5.936956 GGACTGGAGATCATCAATAATGACC 59.063 44.000 0.00 0.00 47.00 4.02
3506 7153 7.809238 TCTTTGGACTGGAGATCATCAATAAT 58.191 34.615 0.00 0.00 0.00 1.28
3873 7655 8.815141 TCAAATTGAACTACCAAAATGTCATG 57.185 30.769 0.00 0.00 0.00 3.07
3903 7685 8.620416 TCCGTTCTCAAATATATGATGTTTTGG 58.380 33.333 0.00 0.00 31.57 3.28
3910 7692 6.498651 ACTCCCTCCGTTCTCAAATATATGAT 59.501 38.462 0.00 0.00 0.00 2.45
4073 7908 7.132213 AGGACGCATTATATCAAAATTGAACG 58.868 34.615 0.00 0.00 41.13 3.95
4302 10766 2.464157 GGAAGACCTCCACACTTCAG 57.536 55.000 0.00 0.00 44.67 3.02
4633 11097 1.738700 CGAGGAGCTTGGAGAAGAAGC 60.739 57.143 0.00 0.00 45.22 3.86
4712 11176 0.613572 TGACCTGGCACGAGACCATA 60.614 55.000 0.00 0.00 36.36 2.74
4838 11302 5.303845 TCTGTCCCAGTCTCTCAATATGATG 59.696 44.000 0.00 0.00 32.61 3.07
5015 11479 0.445436 GCAGACGCTTCACCATCTTG 59.555 55.000 0.00 0.00 34.30 3.02
5030 11494 0.944311 GAAACTTCAGGCGACGCAGA 60.944 55.000 23.09 15.85 0.00 4.26
5055 11519 0.669077 ATCTCACCGCATCCTCGTAC 59.331 55.000 0.00 0.00 0.00 3.67
5146 11610 2.862347 GATGCTCGCTGGCAGTTTGC 62.862 60.000 17.16 16.78 45.75 3.68
5173 11637 3.055591 CGGATATACTGCAGCTTCTGTG 58.944 50.000 15.27 0.00 33.43 3.66
5422 11886 1.098050 GTCCTTGCTGTTATGCCTGG 58.902 55.000 0.00 0.00 0.00 4.45
5624 12100 0.830648 TTAAGGCGTCCATCTCCAGG 59.169 55.000 0.00 0.00 0.00 4.45
5655 12131 0.534203 TTGTTGCCCAGGAACTCGAC 60.534 55.000 0.73 0.00 34.60 4.20
5666 12142 1.095807 GCTCCGGTAGATTGTTGCCC 61.096 60.000 0.00 0.00 0.00 5.36
5668 12144 2.596904 TAGCTCCGGTAGATTGTTGC 57.403 50.000 0.00 0.00 0.00 4.17
5669 12145 2.802816 GCATAGCTCCGGTAGATTGTTG 59.197 50.000 0.00 0.00 0.00 3.33
5670 12146 2.434336 TGCATAGCTCCGGTAGATTGTT 59.566 45.455 0.00 0.00 0.00 2.83
5671 12147 2.039418 TGCATAGCTCCGGTAGATTGT 58.961 47.619 0.00 0.00 0.00 2.71
5675 12151 1.203063 AGGATGCATAGCTCCGGTAGA 60.203 52.381 0.00 0.00 36.62 2.59
5853 12329 0.099613 TCGATCTTCAGCAGCTCGAC 59.900 55.000 0.00 0.00 43.57 4.20
5899 12375 0.402121 GGACAGAAAGTTCAGGCCCT 59.598 55.000 0.00 0.00 35.96 5.19
6011 12487 1.562783 GTAGTCCCTCCAGCTTCACT 58.437 55.000 0.00 0.00 0.00 3.41
6033 12509 1.067776 GTCGACCCTTCATGACGAACT 60.068 52.381 3.51 0.00 34.91 3.01
6041 12517 1.144057 GGCGATGTCGACCCTTCAT 59.856 57.895 14.12 0.00 42.67 2.57
6054 12530 2.906354 AGTGAAATAAAGAGCGGCGAT 58.094 42.857 12.98 2.76 0.00 4.58
6055 12531 2.380084 AGTGAAATAAAGAGCGGCGA 57.620 45.000 12.98 0.00 0.00 5.54
6057 12533 3.831715 ACAAGTGAAATAAAGAGCGGC 57.168 42.857 0.00 0.00 0.00 6.53
6082 12558 4.854399 CGCAGGTGAAAACAAGTGAAATA 58.146 39.130 0.00 0.00 0.00 1.40
6083 12559 3.705604 CGCAGGTGAAAACAAGTGAAAT 58.294 40.909 0.00 0.00 0.00 2.17
6103 12579 3.815569 GACTGGATCGAGCTCGCCG 62.816 68.421 30.97 22.08 39.60 6.46
6104 12580 2.026879 GACTGGATCGAGCTCGCC 59.973 66.667 30.97 25.81 39.60 5.54
6136 12612 4.154347 CTGACGAGGCCTCCCTGC 62.154 72.222 27.20 13.70 43.12 4.85
6137 12613 3.465403 CCTGACGAGGCCTCCCTG 61.465 72.222 27.20 20.21 43.12 4.45
6138 12614 4.787280 CCCTGACGAGGCCTCCCT 62.787 72.222 27.20 12.42 46.74 4.20
6201 12950 4.785453 GGAAGAGGCGGCACCAGG 62.785 72.222 13.08 0.00 43.14 4.45
6202 12951 3.965539 CTGGAAGAGGCGGCACCAG 62.966 68.421 21.83 21.83 43.14 4.00
6203 12952 4.020617 CTGGAAGAGGCGGCACCA 62.021 66.667 13.08 13.66 43.14 4.17
6204 12953 4.785453 CCTGGAAGAGGCGGCACC 62.785 72.222 13.08 9.55 34.01 5.01
6206 12955 2.927856 TTCCTGGAAGAGGCGGCA 60.928 61.111 13.08 0.00 42.47 5.69
6207 12956 2.124942 CTTCCTGGAAGAGGCGGC 60.125 66.667 28.57 0.00 41.71 6.53
6208 12957 2.586792 CCTTCCTGGAAGAGGCGG 59.413 66.667 32.80 16.26 41.71 6.13
6211 12960 2.586792 CGGCCTTCCTGGAAGAGG 59.413 66.667 32.80 21.60 41.71 3.69
6212 12961 2.124942 GCGGCCTTCCTGGAAGAG 60.125 66.667 32.80 23.66 41.71 2.85
6253 13005 2.746359 GGATCAGATCCGGCCTGG 59.254 66.667 14.02 3.90 40.13 4.45
6263 13015 0.549902 TTCCTTGGCCCTGGATCAGA 60.550 55.000 13.68 0.00 32.44 3.27
6265 13017 0.552848 GATTCCTTGGCCCTGGATCA 59.447 55.000 13.68 1.90 31.76 2.92
6268 13020 2.679342 CGGATTCCTTGGCCCTGGA 61.679 63.158 9.49 9.49 0.00 3.86
6269 13021 2.124151 CGGATTCCTTGGCCCTGG 60.124 66.667 0.00 1.75 0.00 4.45
6270 13022 2.830370 GCGGATTCCTTGGCCCTG 60.830 66.667 0.00 0.00 0.00 4.45
6271 13023 4.129148 GGCGGATTCCTTGGCCCT 62.129 66.667 0.00 0.00 39.67 5.19
6274 13041 2.196245 GGATGGCGGATTCCTTGGC 61.196 63.158 0.30 0.00 0.00 4.52
6276 13043 1.893808 CCGGATGGCGGATTCCTTG 60.894 63.158 0.00 0.00 0.00 3.61
6296 13063 1.750399 GGCGATGTTCATGGCAGGT 60.750 57.895 18.23 0.00 0.00 4.00
6297 13064 2.827051 CGGCGATGTTCATGGCAGG 61.827 63.158 18.23 0.00 0.00 4.85
6303 13070 4.838152 AGCGGCGGCGATGTTCAT 62.838 61.111 36.87 7.77 46.35 2.57
6306 13073 4.760047 AAGAGCGGCGGCGATGTT 62.760 61.111 36.87 31.05 46.35 2.71
6307 13074 4.760047 AAAGAGCGGCGGCGATGT 62.760 61.111 36.87 26.58 46.35 3.06
6308 13075 3.929948 GAAAGAGCGGCGGCGATG 61.930 66.667 36.87 6.80 46.35 3.84
6309 13076 4.451150 TGAAAGAGCGGCGGCGAT 62.451 61.111 36.87 31.85 46.35 4.58
6345 13113 5.065474 GCAGCGGTAACATGGTTTTTCTATA 59.935 40.000 0.00 0.00 0.00 1.31
6346 13114 4.142469 GCAGCGGTAACATGGTTTTTCTAT 60.142 41.667 0.00 0.00 0.00 1.98
6347 13115 3.189702 GCAGCGGTAACATGGTTTTTCTA 59.810 43.478 0.00 0.00 0.00 2.10
6348 13116 2.030274 GCAGCGGTAACATGGTTTTTCT 60.030 45.455 0.00 0.00 0.00 2.52
6349 13117 2.030274 AGCAGCGGTAACATGGTTTTTC 60.030 45.455 0.00 0.00 30.21 2.29
6350 13118 1.960689 AGCAGCGGTAACATGGTTTTT 59.039 42.857 0.00 0.00 30.21 1.94
6351 13119 1.539827 GAGCAGCGGTAACATGGTTTT 59.460 47.619 0.00 0.00 34.19 2.43
6352 13120 1.165270 GAGCAGCGGTAACATGGTTT 58.835 50.000 0.00 0.00 34.19 3.27
6353 13121 0.036164 TGAGCAGCGGTAACATGGTT 59.964 50.000 0.00 0.00 34.19 3.67
6373 13141 3.553922 CGGACTCCAGGCTCATCTTATTC 60.554 52.174 0.00 0.00 0.00 1.75
6379 13147 2.107953 GCGGACTCCAGGCTCATC 59.892 66.667 0.00 0.00 0.00 2.92
6402 13170 5.416013 GCTAAAGCTAAACCAGGTTCATCTT 59.584 40.000 4.93 6.23 44.18 2.40
6404 13172 4.700213 TGCTAAAGCTAAACCAGGTTCATC 59.300 41.667 4.93 0.00 44.18 2.92
6405 13173 4.662278 TGCTAAAGCTAAACCAGGTTCAT 58.338 39.130 4.93 0.00 44.18 2.57
6406 13174 4.093472 TGCTAAAGCTAAACCAGGTTCA 57.907 40.909 4.93 0.00 44.18 3.18
6407 13175 5.644977 AATGCTAAAGCTAAACCAGGTTC 57.355 39.130 4.93 0.00 44.18 3.62
6408 13176 5.304357 ACAAATGCTAAAGCTAAACCAGGTT 59.696 36.000 0.00 0.00 46.92 3.50
6409 13177 4.832823 ACAAATGCTAAAGCTAAACCAGGT 59.167 37.500 3.26 0.00 42.66 4.00
6410 13178 5.391312 ACAAATGCTAAAGCTAAACCAGG 57.609 39.130 3.26 0.00 42.66 4.45
6411 13179 7.377766 TCTACAAATGCTAAAGCTAAACCAG 57.622 36.000 3.26 0.00 42.66 4.00
6412 13180 7.938140 ATCTACAAATGCTAAAGCTAAACCA 57.062 32.000 3.26 0.00 42.66 3.67
6413 13181 8.343366 GGTATCTACAAATGCTAAAGCTAAACC 58.657 37.037 3.26 0.00 42.66 3.27
6414 13182 8.889717 TGGTATCTACAAATGCTAAAGCTAAAC 58.110 33.333 3.26 0.00 42.66 2.01
6415 13183 9.627123 ATGGTATCTACAAATGCTAAAGCTAAA 57.373 29.630 3.26 0.00 42.66 1.85
6417 13185 9.056005 CAATGGTATCTACAAATGCTAAAGCTA 57.944 33.333 3.26 0.00 42.66 3.32
6418 13186 7.557719 ACAATGGTATCTACAAATGCTAAAGCT 59.442 33.333 3.26 0.00 42.66 3.74
6419 13187 7.707104 ACAATGGTATCTACAAATGCTAAAGC 58.293 34.615 0.00 0.00 42.50 3.51
6421 13189 7.831690 TGGACAATGGTATCTACAAATGCTAAA 59.168 33.333 0.00 0.00 0.00 1.85
6422 13190 7.342581 TGGACAATGGTATCTACAAATGCTAA 58.657 34.615 0.00 0.00 0.00 3.09
6423 13191 6.894682 TGGACAATGGTATCTACAAATGCTA 58.105 36.000 0.00 0.00 0.00 3.49
6424 13192 5.754782 TGGACAATGGTATCTACAAATGCT 58.245 37.500 0.00 0.00 0.00 3.79
6425 13193 6.449635 TTGGACAATGGTATCTACAAATGC 57.550 37.500 0.00 0.00 0.00 3.56
6426 13194 9.139174 GTTTTTGGACAATGGTATCTACAAATG 57.861 33.333 0.00 0.00 0.00 2.32
6427 13195 8.865090 TGTTTTTGGACAATGGTATCTACAAAT 58.135 29.630 0.00 0.00 0.00 2.32
6428 13196 8.239038 TGTTTTTGGACAATGGTATCTACAAA 57.761 30.769 0.00 0.00 0.00 2.83
6429 13197 7.825331 TGTTTTTGGACAATGGTATCTACAA 57.175 32.000 0.00 0.00 0.00 2.41
6462 13270 2.880890 GGCTATGGTTTGGATGCTACAG 59.119 50.000 0.00 0.00 0.00 2.74
6465 13273 2.777114 TCAGGCTATGGTTTGGATGCTA 59.223 45.455 0.00 0.00 0.00 3.49
6490 13298 1.847328 TGGATACGGTGCTCTCTGAA 58.153 50.000 0.00 0.00 42.51 3.02
6497 13305 2.277084 GTTCGATTTGGATACGGTGCT 58.723 47.619 0.00 0.00 42.51 4.40
6499 13307 4.153475 AGTTTGTTCGATTTGGATACGGTG 59.847 41.667 0.00 0.00 42.51 4.94
6500 13308 4.320870 AGTTTGTTCGATTTGGATACGGT 58.679 39.130 0.00 0.00 42.51 4.83
6503 13313 6.899114 ACTTGAGTTTGTTCGATTTGGATAC 58.101 36.000 0.00 0.00 0.00 2.24
6529 13339 5.569059 GGTTTATGTGAAACTCTGCATTTCG 59.431 40.000 6.75 0.00 38.64 3.46
6540 13350 5.507315 CCCAAGACACTGGTTTATGTGAAAC 60.507 44.000 0.00 0.00 37.59 2.78
6546 13356 5.782893 TTTTCCCAAGACACTGGTTTATG 57.217 39.130 0.00 0.00 34.33 1.90
6577 13391 5.541845 CCAGGAATTTTCTGGGAAAGTTTC 58.458 41.667 15.16 7.09 45.95 2.78
6578 13392 5.551305 CCAGGAATTTTCTGGGAAAGTTT 57.449 39.130 15.16 0.00 45.95 2.66
6587 13401 2.603075 TGGGACCCAGGAATTTTCTG 57.397 50.000 9.95 0.00 0.00 3.02
6599 13413 0.550914 TAATGCACCATCTGGGACCC 59.449 55.000 2.45 2.45 41.15 4.46
6603 13417 8.558973 TTTTAAATTTTAATGCACCATCTGGG 57.441 30.769 0.00 0.00 44.81 4.45
6628 13442 9.593565 AGGAAGATGGAAATAGAAAAGTTTCTT 57.406 29.630 11.36 0.00 44.70 2.52
6630 13444 9.237187 AGAGGAAGATGGAAATAGAAAAGTTTC 57.763 33.333 0.00 0.00 37.45 2.78
6632 13446 7.613411 CCAGAGGAAGATGGAAATAGAAAAGTT 59.387 37.037 0.00 0.00 39.02 2.66
6633 13447 7.115414 CCAGAGGAAGATGGAAATAGAAAAGT 58.885 38.462 0.00 0.00 39.02 2.66
6634 13448 6.039159 GCCAGAGGAAGATGGAAATAGAAAAG 59.961 42.308 0.00 0.00 39.02 2.27
6635 13449 5.888161 GCCAGAGGAAGATGGAAATAGAAAA 59.112 40.000 0.00 0.00 39.02 2.29
6636 13450 5.044919 TGCCAGAGGAAGATGGAAATAGAAA 60.045 40.000 0.00 0.00 39.02 2.52
6637 13451 4.474651 TGCCAGAGGAAGATGGAAATAGAA 59.525 41.667 0.00 0.00 39.02 2.10
6638 13452 4.040047 TGCCAGAGGAAGATGGAAATAGA 58.960 43.478 0.00 0.00 39.02 1.98
6639 13453 4.133078 GTGCCAGAGGAAGATGGAAATAG 58.867 47.826 0.00 0.00 39.02 1.73
6640 13454 3.523157 TGTGCCAGAGGAAGATGGAAATA 59.477 43.478 0.00 0.00 39.02 1.40
6682 13496 3.428045 GGAATTTCGTTTGGATGGAGCAG 60.428 47.826 0.00 0.00 0.00 4.24
6703 13517 5.764686 TGTCCATGGAATAATCTTGAATCGG 59.235 40.000 18.20 0.00 0.00 4.18
6706 13520 7.959658 TTGTGTCCATGGAATAATCTTGAAT 57.040 32.000 18.20 0.00 0.00 2.57
6762 13579 0.536006 GGCTCTGTCTGGCTTTGTGT 60.536 55.000 0.00 0.00 0.00 3.72
6795 13614 2.096516 GCTGATCGAGATTTCAATCGGC 60.097 50.000 2.50 2.50 41.71 5.54
6796 13615 3.126073 TGCTGATCGAGATTTCAATCGG 58.874 45.455 0.00 0.00 40.35 4.18
6797 13616 3.362791 GCTGCTGATCGAGATTTCAATCG 60.363 47.826 0.00 0.00 40.35 3.34
6802 13621 2.274437 TGTGCTGCTGATCGAGATTTC 58.726 47.619 0.00 0.00 0.00 2.17
6928 13749 2.034687 GTGCTGGTCACATGGGCT 59.965 61.111 0.00 0.00 44.98 5.19
6957 13780 0.371645 CTGAAAGGATCGTGAAGCGC 59.628 55.000 0.00 0.00 41.07 5.92
6985 13808 0.462937 TACTGTTGTTGCCGTGCTGT 60.463 50.000 0.00 0.00 0.00 4.40
6988 13811 0.941542 TCTTACTGTTGTTGCCGTGC 59.058 50.000 0.00 0.00 0.00 5.34
7013 13836 2.787473 TGGTTGACCCTGCAATCTAG 57.213 50.000 0.00 0.00 34.29 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.