AutoCloner

Multiple sequence alignment - TraesCS7A01G463700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G463700	chr7A	100.000	3174	0	0	1	3174	660436654	660439827	0.000000e+00	5862.0
1	TraesCS7A01G463700	chr7A	78.549	1296	201	40	279	1514	484084068	484085346	0.000000e+00	782.0
2	TraesCS7A01G463700	chr1A	96.848	2633	54	8	1	2626	232043157	232045767	0.000000e+00	4375.0
3	TraesCS7A01G463700	chr1A	90.777	1171	96	7	1503	2670	568466046	568464885	0.000000e+00	1554.0
4	TraesCS7A01G463700	chr1A	98.186	441	8	0	2734	3174	232059579	232060019	0.000000e+00	771.0
5	TraesCS7A01G463700	chr1A	89.294	439	46	1	2734	3172	118278249	118277812	1.660000e-152	549.0
6	TraesCS7A01G463700	chr1A	98.276	58	1	0	2621	2678	232059522	232059579	5.600000e-18	102.0
7	TraesCS7A01G463700	chr4A	88.570	2721	206	44	1	2671	721012011	721009346	0.000000e+00	3205.0
8	TraesCS7A01G463700	chr4A	78.665	1303	195	45	274	1514	234133138	234134419	0.000000e+00	789.0
9	TraesCS7A01G463700	chr4A	89.522	439	45	1	2734	3172	494015904	494016341	3.580000e-154	555.0
10	TraesCS7A01G463700	chr4A	87.472	439	55	0	2734	3172	721009347	721008909	1.020000e-139	507.0
11	TraesCS7A01G463700	chr4A	89.276	373	28	6	2294	2659	494015526	494015893	1.040000e-124	457.0
12	TraesCS7A01G463700	chr1D	92.197	1115	74	9	1554	2660	469032897	469031788	0.000000e+00	1565.0
13	TraesCS7A01G463700	chr5A	90.700	1172	98	7	1503	2670	492688364	492687200	0.000000e+00	1550.0
14	TraesCS7A01G463700	chr7B	90.566	1113	80	8	1554	2661	645258913	645260005	0.000000e+00	1450.0
15	TraesCS7A01G463700	chr7D	91.928	892	68	4	1503	2393	587181499	587180611	0.000000e+00	1245.0
16	TraesCS7A01G463700	chr7D	78.935	1296	197	42	279	1514	597995677	597996956	0.000000e+00	811.0
17	TraesCS7A01G463700	chr7D	89.749	439	45	0	2734	3172	28801286	28801724	2.140000e-156	562.0
18	TraesCS7A01G463700	chr7D	79.390	820	109	27	274	1037	587182748	587181933	1.010000e-144	523.0
19	TraesCS7A01G463700	chr3A	90.807	892	78	4	1503	2393	644775609	644774721	0.000000e+00	1190.0
20	TraesCS7A01G463700	chr5D	90.828	894	72	6	1503	2392	482176356	482177243	0.000000e+00	1188.0
21	TraesCS7A01G463700	chr6D	90.695	892	80	3	1503	2393	470412497	470411608	0.000000e+00	1184.0
22	TraesCS7A01G463700	chr6D	79.268	820	110	25	274	1037	329075096	329075911	4.690000e-143	518.0
23	TraesCS7A01G463700	chr6D	77.723	202	29	12	28	218	329074889	329075085	3.350000e-20	110.0
24	TraesCS7A01G463700	chr2B	78.720	1297	197	42	279	1514	666533539	666534817	0.000000e+00	793.0
25	TraesCS7A01G463700	chr2B	89.977	439	44	0	2734	3172	790839822	790840260	4.590000e-158	568.0
26	TraesCS7A01G463700	chr2B	89.119	386	32	6	2288	2671	51055986	51056363	3.710000e-129	472.0
27	TraesCS7A01G463700	chr2D	79.002	1262	187	44	315	1514	362652792	362651547	0.000000e+00	791.0
28	TraesCS7A01G463700	chr2D	78.610	1295	203	40	279	1514	587128034	587129313	0.000000e+00	789.0
29	TraesCS7A01G463700	chr2D	78.241	1296	199	44	279	1514	587142923	587144195	0.000000e+00	754.0
30	TraesCS7A01G463700	chr6A	79.793	1064	157	31	492	1514	120141695	120142741	0.000000e+00	721.0
31	TraesCS7A01G463700	chr1B	80.396	1010	132	35	401	1369	672697933	672696949	0.000000e+00	708.0
32	TraesCS7A01G463700	chr1B	89.977	439	44	0	2734	3172	90433579	90434017	4.590000e-158	568.0
33	TraesCS7A01G463700	chr1B	86.788	439	57	1	2734	3172	672690400	672689963	3.680000e-134	488.0
34	TraesCS7A01G463700	chr1B	80.938	661	85	25	284	909	90431149	90431803	4.760000e-133	484.0
35	TraesCS7A01G463700	chr3D	88.383	439	51	0	2734	3172	550034571	550034133	2.170000e-146	529.0
36	TraesCS7A01G463700	chr3D	89.008	373	29	6	2294	2659	550034949	550034582	4.830000e-123	451.0
37	TraesCS7A01G463700	chr3D	81.905	105	16	3	80	182	596110526	596110423	5.640000e-13	86.1
38	TraesCS7A01G463700	chr4D	78.902	820	113	29	274	1037	433633612	433632797	4.730000e-138	501.0
39	TraesCS7A01G463700	chr4D	77.723	202	29	12	28	218	433633819	433633623	3.350000e-20	110.0
40	TraesCS7A01G463700	chr3B	78.894	199	31	9	28	218	422329451	422329646	1.200000e-24	124.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G463700	chr7A	660436654	660439827	3173	False	5862.0	5862	100.0000	1	3174	1	chr7A.!!$F2	3173
1	TraesCS7A01G463700	chr7A	484084068	484085346	1278	False	782.0	782	78.5490	279	1514	1	chr7A.!!$F1	1235
2	TraesCS7A01G463700	chr1A	232043157	232045767	2610	False	4375.0	4375	96.8480	1	2626	1	chr1A.!!$F1	2625
3	TraesCS7A01G463700	chr1A	568464885	568466046	1161	True	1554.0	1554	90.7770	1503	2670	1	chr1A.!!$R2	1167
4	TraesCS7A01G463700	chr4A	721008909	721012011	3102	True	1856.0	3205	88.0210	1	3172	2	chr4A.!!$R1	3171
5	TraesCS7A01G463700	chr4A	234133138	234134419	1281	False	789.0	789	78.6650	274	1514	1	chr4A.!!$F1	1240
6	TraesCS7A01G463700	chr4A	494015526	494016341	815	False	506.0	555	89.3990	2294	3172	2	chr4A.!!$F2	878
7	TraesCS7A01G463700	chr1D	469031788	469032897	1109	True	1565.0	1565	92.1970	1554	2660	1	chr1D.!!$R1	1106
8	TraesCS7A01G463700	chr5A	492687200	492688364	1164	True	1550.0	1550	90.7000	1503	2670	1	chr5A.!!$R1	1167
9	TraesCS7A01G463700	chr7B	645258913	645260005	1092	False	1450.0	1450	90.5660	1554	2661	1	chr7B.!!$F1	1107
10	TraesCS7A01G463700	chr7D	587180611	587182748	2137	True	884.0	1245	85.6590	274	2393	2	chr7D.!!$R1	2119
11	TraesCS7A01G463700	chr7D	597995677	597996956	1279	False	811.0	811	78.9350	279	1514	1	chr7D.!!$F2	1235
12	TraesCS7A01G463700	chr3A	644774721	644775609	888	True	1190.0	1190	90.8070	1503	2393	1	chr3A.!!$R1	890
13	TraesCS7A01G463700	chr5D	482176356	482177243	887	False	1188.0	1188	90.8280	1503	2392	1	chr5D.!!$F1	889
14	TraesCS7A01G463700	chr6D	470411608	470412497	889	True	1184.0	1184	90.6950	1503	2393	1	chr6D.!!$R1	890
15	TraesCS7A01G463700	chr6D	329074889	329075911	1022	False	314.0	518	78.4955	28	1037	2	chr6D.!!$F1	1009
16	TraesCS7A01G463700	chr2B	666533539	666534817	1278	False	793.0	793	78.7200	279	1514	1	chr2B.!!$F2	1235
17	TraesCS7A01G463700	chr2D	362651547	362652792	1245	True	791.0	791	79.0020	315	1514	1	chr2D.!!$R1	1199
18	TraesCS7A01G463700	chr2D	587128034	587129313	1279	False	789.0	789	78.6100	279	1514	1	chr2D.!!$F1	1235
19	TraesCS7A01G463700	chr2D	587142923	587144195	1272	False	754.0	754	78.2410	279	1514	1	chr2D.!!$F2	1235
20	TraesCS7A01G463700	chr6A	120141695	120142741	1046	False	721.0	721	79.7930	492	1514	1	chr6A.!!$F1	1022
21	TraesCS7A01G463700	chr1B	672696949	672697933	984	True	708.0	708	80.3960	401	1369	1	chr1B.!!$R2	968
22	TraesCS7A01G463700	chr1B	90431149	90434017	2868	False	526.0	568	85.4575	284	3172	2	chr1B.!!$F1	2888
23	TraesCS7A01G463700	chr3D	550034133	550034949	816	True	490.0	529	88.6955	2294	3172	2	chr3D.!!$R2	878
24	TraesCS7A01G463700	chr4D	433632797	433633819	1022	True	305.5	501	78.3125	28	1037	2	chr4D.!!$R1	1009

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
602	657	0.105039	CTCCATCTAAGCCACCCGTC	59.895	60.0	0.0	0.0	0.0	4.79	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2448	2934	5.461032	AGCTATCTATCTGGTTCTTTCCG	57.539	43.478	0.0	0.0	0.0	4.3	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
329	349	6.231258	AGATGCAGTGAGAAGACAATATGA	57.769	37.500	0.00	0.00	0.00	2.15
341	361	6.610830	AGAAGACAATATGACATCCTCTCAGT	59.389	38.462	0.00	0.00	0.00	3.41
530	585	9.205513	AGGGATGCAATATTAAAAAGAAGACAT	57.794	29.630	0.00	0.00	0.00	3.06
602	657	0.105039	CTCCATCTAAGCCACCCGTC	59.895	60.000	0.00	0.00	0.00	4.79
913	1000	6.072175	TCCAAATTCATTAAGAACACCCGAAG	60.072	38.462	0.00	0.00	39.49	3.79
1011	1114	5.008911	TGCAGCATGTCATATGGTAATCAAC	59.991	40.000	2.13	0.00	39.31	3.18
1860	2330	7.442364	CACTGCTACCTATGTGTTATAAATGCT	59.558	37.037	0.00	0.00	0.00	3.79
2448	2934	7.941795	ACAACAACTATCTTACTACACACAC	57.058	36.000	0.00	0.00	0.00	3.82
2573	3062	1.812571	GAATGACAATGTGGCGAAGGT	59.187	47.619	0.00	0.00	0.00	3.50
2626	3115	6.441274	TCAGCAAAGTTCAGATGTCAAATTC	58.559	36.000	0.00	0.00	0.00	2.17
2627	3116	6.039605	TCAGCAAAGTTCAGATGTCAAATTCA	59.960	34.615	0.00	0.00	0.00	2.57
2628	3117	6.866770	CAGCAAAGTTCAGATGTCAAATTCAT	59.133	34.615	0.00	0.00	0.00	2.57
2629	3118	8.024865	CAGCAAAGTTCAGATGTCAAATTCATA	58.975	33.333	0.00	0.00	0.00	2.15
2630	3119	8.746530	AGCAAAGTTCAGATGTCAAATTCATAT	58.253	29.630	0.00	0.00	0.00	1.78
2631	3120	8.804743	GCAAAGTTCAGATGTCAAATTCATATG	58.195	33.333	0.00	0.00	36.32	1.78
2632	3121	8.804743	CAAAGTTCAGATGTCAAATTCATATGC	58.195	33.333	0.00	0.00	35.38	3.14
2633	3122	7.634671	AGTTCAGATGTCAAATTCATATGCA	57.365	32.000	0.00	0.00	35.38	3.96
2634	3123	8.058667	AGTTCAGATGTCAAATTCATATGCAA	57.941	30.769	0.00	0.00	35.38	4.08
2742	3231	1.809547	CACACACACACACCAACTTGA	59.190	47.619	0.00	0.00	0.00	3.02
2752	3241	1.613437	CACCAACTTGATTGTGACCCC	59.387	52.381	0.00	0.00	36.47	4.95
2759	3248	0.768622	TGATTGTGACCCCGGAACTT	59.231	50.000	0.73	0.00	0.00	2.66
2776	3265	5.306394	GGAACTTTCTGTTACTTAGTGCCT	58.694	41.667	0.00	0.00	39.30	4.75
2797	3286	6.094186	TGCCTGTAATAATGCGACATTACAAA	59.906	34.615	12.42	4.97	43.44	2.83
2798	3287	6.632834	GCCTGTAATAATGCGACATTACAAAG	59.367	38.462	12.42	10.96	43.44	2.77
2811	3300	6.590292	CGACATTACAAAGTGAGAATACCACT	59.410	38.462	0.00	0.00	45.88	4.00
2813	3302	7.450074	ACATTACAAAGTGAGAATACCACTCA	58.550	34.615	0.00	0.00	43.42	3.41
2826	3315	7.168219	AGAATACCACTCAAATCAAGCAACTA	58.832	34.615	0.00	0.00	0.00	2.24
2840	3329	4.670896	AGCAACTACCACAAAAAGCAAT	57.329	36.364	0.00	0.00	0.00	3.56
2852	3341	4.977963	ACAAAAAGCAATGACTCAACATCG	59.022	37.500	0.00	0.00	0.00	3.84
2860	3349	6.146837	AGCAATGACTCAACATCGATTATAGC	59.853	38.462	0.00	0.00	0.00	2.97
2872	3361	7.925993	ACATCGATTATAGCTAGCTGATAGTC	58.074	38.462	27.68	20.90	33.65	2.59
2884	3373	6.481644	GCTAGCTGATAGTCACAAATTAAGCT	59.518	38.462	7.70	0.00	41.16	3.74
2908	3397	6.438186	ACCCAGAATTCAAATCCACAAATT	57.562	33.333	8.44	0.00	0.00	1.82
2912	3401	9.452287	CCCAGAATTCAAATCCACAAATTAATT	57.548	29.630	8.44	0.00	0.00	1.40
2950	3439	2.547855	GGTTGCCTCAAAAATGTCACCC	60.548	50.000	0.00	0.00	0.00	4.61
2972	3461	4.049186	CGACTAAATCCCCACTGATAACG	58.951	47.826	0.00	0.00	0.00	3.18
2973	3462	4.377897	GACTAAATCCCCACTGATAACGG	58.622	47.826	0.00	0.00	0.00	4.44
3000	3489	6.767902	AGGTGCATTAACAACATCTAATCGAT	59.232	34.615	0.00	0.00	0.00	3.59
3001	3490	7.283127	AGGTGCATTAACAACATCTAATCGATT	59.717	33.333	16.15	16.15	0.00	3.34
3026	3515	1.597854	CCTTCAGCAACCGAGCACA	60.598	57.895	0.00	0.00	36.85	4.57
3032	3521	3.089784	CAACCGAGCACATACGCC	58.910	61.111	0.00	0.00	0.00	5.68
3072	3561	0.181114	AGCAACTGTGTGAGCCAAGA	59.819	50.000	0.00	0.00	0.00	3.02
3075	3564	2.016318	CAACTGTGTGAGCCAAGAACA	58.984	47.619	0.00	0.00	0.00	3.18
3137	3626	1.303309	GGTCCAATTCGAGATGCCTG	58.697	55.000	0.00	0.00	0.00	4.85
3139	3628	0.811219	TCCAATTCGAGATGCCTGCG	60.811	55.000	0.00	0.00	0.00	5.18
3142	3631	2.599645	AATTCGAGATGCCTGCGCCT	62.600	55.000	4.18	0.00	0.00	5.52
3158	3647	2.393768	CCTGCATCGTGTCCAGCAC	61.394	63.158	0.00	0.00	44.36	4.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	2.427753	GGGTCGAGGATGGCCATC	59.572	66.667	33.90	33.90	36.29	3.51
20	21	3.550431	CGGGTCGAGGATGGCCAT	61.550	66.667	20.96	20.96	36.29	4.40
329	349	2.461695	CCCACTACACTGAGAGGATGT	58.538	52.381	0.00	0.00	29.20	3.06
341	361	2.588720	AGGGAGTACATACCCCACTACA	59.411	50.000	15.83	0.00	46.64	2.74
530	585	1.860641	TCTTACGATCCCTTGCCTCA	58.139	50.000	0.00	0.00	0.00	3.86
602	657	0.036010	AGAAACCAGGCGACATGGAG	60.036	55.000	15.63	0.00	40.51	3.86
913	1000	2.346847	GCAGACTCGACATGTTGACATC	59.653	50.000	11.98	12.09	33.61	3.06
1215	1329	2.673368	GACAACTGTAGATTTGGCTCGG	59.327	50.000	0.00	0.00	0.00	4.63
1550	1772	5.717178	TGACCTTACCTATAGATGCTCCATC	59.283	44.000	0.00	0.00	40.80	3.51
1860	2330	6.145534	CGAGCACTTGAACACATAGTTTTCTA	59.854	38.462	0.00	0.00	41.51	2.10
2244	2721	8.750515	TGTTGATCAAATATGCTTCAGGAATA	57.249	30.769	10.35	0.00	0.00	1.75
2448	2934	5.461032	AGCTATCTATCTGGTTCTTTCCG	57.539	43.478	0.00	0.00	0.00	4.30
2626	3115	8.400186	TCAGAAATACATGTGACTTTGCATATG	58.600	33.333	9.11	0.00	41.43	1.78
2627	3116	8.510243	TCAGAAATACATGTGACTTTGCATAT	57.490	30.769	9.11	0.00	0.00	1.78
2628	3117	7.920160	TCAGAAATACATGTGACTTTGCATA	57.080	32.000	9.11	0.00	0.00	3.14
2629	3118	6.822667	TCAGAAATACATGTGACTTTGCAT	57.177	33.333	9.11	0.00	0.00	3.96
2630	3119	6.822667	ATCAGAAATACATGTGACTTTGCA	57.177	33.333	9.11	0.00	0.00	4.08
2631	3120	7.751732	TGTATCAGAAATACATGTGACTTTGC	58.248	34.615	9.11	0.00	30.34	3.68
2634	3123	9.283768	TGTTTGTATCAGAAATACATGTGACTT	57.716	29.630	9.11	0.00	34.83	3.01
2710	3199	9.357161	TGGTGTGTGTGTGTGTCTATATATATA	57.643	33.333	2.49	2.49	0.00	0.86
2711	3200	8.245195	TGGTGTGTGTGTGTGTCTATATATAT	57.755	34.615	0.00	0.00	0.00	0.86
2712	3201	7.648039	TGGTGTGTGTGTGTGTCTATATATA	57.352	36.000	0.00	0.00	0.00	0.86
2713	3202	6.538945	TGGTGTGTGTGTGTGTCTATATAT	57.461	37.500	0.00	0.00	0.00	0.86
2714	3203	5.986501	TGGTGTGTGTGTGTGTCTATATA	57.013	39.130	0.00	0.00	0.00	0.86
2715	3204	4.882842	TGGTGTGTGTGTGTGTCTATAT	57.117	40.909	0.00	0.00	0.00	0.86
2716	3205	4.100344	AGTTGGTGTGTGTGTGTGTCTATA	59.900	41.667	0.00	0.00	0.00	1.31
2717	3206	3.118408	AGTTGGTGTGTGTGTGTGTCTAT	60.118	43.478	0.00	0.00	0.00	1.98
2718	3207	2.235155	AGTTGGTGTGTGTGTGTGTCTA	59.765	45.455	0.00	0.00	0.00	2.59
2719	3208	1.003118	AGTTGGTGTGTGTGTGTGTCT	59.997	47.619	0.00	0.00	0.00	3.41
2720	3209	1.448985	AGTTGGTGTGTGTGTGTGTC	58.551	50.000	0.00	0.00	0.00	3.67
2721	3210	1.539388	CAAGTTGGTGTGTGTGTGTGT	59.461	47.619	0.00	0.00	0.00	3.72
2722	3211	1.809547	TCAAGTTGGTGTGTGTGTGTG	59.190	47.619	2.34	0.00	0.00	3.82
2723	3212	2.192664	TCAAGTTGGTGTGTGTGTGT	57.807	45.000	2.34	0.00	0.00	3.72
2724	3213	3.119531	ACAATCAAGTTGGTGTGTGTGTG	60.120	43.478	11.03	0.00	42.28	3.82
2725	3214	3.088532	ACAATCAAGTTGGTGTGTGTGT	58.911	40.909	11.03	0.00	42.28	3.72
2726	3215	3.128415	TCACAATCAAGTTGGTGTGTGTG	59.872	43.478	26.31	19.99	42.28	3.82
2727	3216	3.128589	GTCACAATCAAGTTGGTGTGTGT	59.871	43.478	26.31	11.63	42.28	3.72
2728	3217	3.489059	GGTCACAATCAAGTTGGTGTGTG	60.489	47.826	26.31	23.15	42.28	3.82
2729	3218	2.687935	GGTCACAATCAAGTTGGTGTGT	59.312	45.455	26.31	16.08	42.28	3.72
2730	3219	2.034558	GGGTCACAATCAAGTTGGTGTG	59.965	50.000	23.79	23.79	42.28	3.82
2731	3220	2.306847	GGGTCACAATCAAGTTGGTGT	58.693	47.619	2.34	5.23	42.28	4.16
2732	3221	1.613437	GGGGTCACAATCAAGTTGGTG	59.387	52.381	2.34	3.81	42.28	4.17
2733	3222	1.817740	CGGGGTCACAATCAAGTTGGT	60.818	52.381	2.34	0.00	42.28	3.67
2734	3223	0.881118	CGGGGTCACAATCAAGTTGG	59.119	55.000	2.34	0.00	42.28	3.77
2742	3231	1.423921	AGAAAGTTCCGGGGTCACAAT	59.576	47.619	0.00	0.00	0.00	2.71
2752	3241	4.151867	GGCACTAAGTAACAGAAAGTTCCG	59.848	45.833	0.00	0.00	41.64	4.30
2759	3248	9.378551	CATTATTACAGGCACTAAGTAACAGAA	57.621	33.333	0.00	0.00	36.02	3.02
2776	3265	8.257830	TCACTTTGTAATGTCGCATTATTACA	57.742	30.769	13.03	10.74	43.92	2.41
2797	3286	5.645497	GCTTGATTTGAGTGGTATTCTCACT	59.355	40.000	0.00	0.00	46.82	3.41
2798	3287	5.412594	TGCTTGATTTGAGTGGTATTCTCAC	59.587	40.000	0.00	0.00	40.90	3.51
2811	3300	5.843673	TTTGTGGTAGTTGCTTGATTTGA	57.156	34.783	0.00	0.00	0.00	2.69
2813	3302	5.523552	GCTTTTTGTGGTAGTTGCTTGATTT	59.476	36.000	0.00	0.00	0.00	2.17
2826	3315	4.081752	TGTTGAGTCATTGCTTTTTGTGGT	60.082	37.500	0.00	0.00	0.00	4.16
2840	3329	6.207614	AGCTAGCTATAATCGATGTTGAGTCA	59.792	38.462	17.69	0.00	0.00	3.41
2852	3341	9.868277	ATTTGTGACTATCAGCTAGCTATAATC	57.132	33.333	18.86	14.36	0.00	1.75
2860	3349	8.973378	GTAGCTTAATTTGTGACTATCAGCTAG	58.027	37.037	0.00	0.00	31.85	3.42
2872	3361	7.156876	TGAATTCTGGGTAGCTTAATTTGTG	57.843	36.000	7.05	0.00	0.00	3.33
2884	3373	7.552050	AATTTGTGGATTTGAATTCTGGGTA	57.448	32.000	7.05	0.00	0.00	3.69
2908	3397	7.706159	CAACCATGCTGTGATAAAGCTAATTA	58.294	34.615	0.00	0.00	41.42	1.40
2950	3439	4.049186	CGTTATCAGTGGGGATTTAGTCG	58.951	47.826	0.00	0.00	0.00	4.18
2972	3461	6.995511	TTAGATGTTGTTAATGCACCTACC	57.004	37.500	0.00	0.00	0.00	3.18
2973	3462	7.223971	TCGATTAGATGTTGTTAATGCACCTAC	59.776	37.037	0.00	0.00	0.00	3.18
3000	3489	2.235155	TCGGTTGCTGAAGGTATGCTAA	59.765	45.455	0.00	0.00	0.00	3.09
3001	3490	1.828595	TCGGTTGCTGAAGGTATGCTA	59.171	47.619	0.00	0.00	0.00	3.49
3032	3521	1.743252	GGGAAGGAGTTCGCAGCTG	60.743	63.158	10.11	10.11	43.49	4.24
3072	3561	0.179056	CGTAATCATCGCCCCCTGTT	60.179	55.000	0.00	0.00	0.00	3.16
3075	3564	3.148084	CCGTAATCATCGCCCCCT	58.852	61.111	0.00	0.00	0.00	4.79
3103	3592	1.226717	GACCGAGATCCAGTGCGTC	60.227	63.158	0.00	0.00	0.00	5.19
3139	3628	3.503363	GCTGGACACGATGCAGGC	61.503	66.667	13.01	4.25	46.53	4.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.