Multiple sequence alignment - TraesCS7A01G463100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G463100 chr7A 100.000 3345 0 0 1 3345 659553633 659550289 0.000000e+00 6178.0
1 TraesCS7A01G463100 chr7A 88.136 59 6 1 3247 3304 475788228 475788170 5.990000e-08 69.4
2 TraesCS7A01G463100 chr7D 91.859 2555 141 32 744 3266 608524704 608522185 0.000000e+00 3504.0
3 TraesCS7A01G463100 chr7D 91.822 966 49 6 631 1571 36177460 36176500 0.000000e+00 1319.0
4 TraesCS7A01G463100 chr7D 90.826 981 45 13 631 1572 245402431 245401457 0.000000e+00 1271.0
5 TraesCS7A01G463100 chr7D 89.236 641 47 14 1 631 570655120 570654492 0.000000e+00 782.0
6 TraesCS7A01G463100 chr7D 85.531 622 50 22 1 602 570663837 570663236 6.130000e-172 614.0
7 TraesCS7A01G463100 chr5D 93.948 1702 82 13 1568 3266 480823221 480821538 0.000000e+00 2553.0
8 TraesCS7A01G463100 chr5D 93.596 1702 88 13 1568 3266 244413299 244411616 0.000000e+00 2519.0
9 TraesCS7A01G463100 chr5D 93.537 1702 88 14 1568 3266 260688924 260687242 0.000000e+00 2514.0
10 TraesCS7A01G463100 chr5D 93.533 1701 90 14 1568 3266 565816840 565818522 0.000000e+00 2514.0
11 TraesCS7A01G463100 chr5D 94.737 228 10 2 631 857 480816934 480817160 1.480000e-93 353.0
12 TraesCS7A01G463100 chr6D 93.710 1701 88 13 1568 3266 472511997 472513680 0.000000e+00 2531.0
13 TraesCS7A01G463100 chr6D 93.537 1702 88 14 1568 3266 51500502 51502184 0.000000e+00 2514.0
14 TraesCS7A01G463100 chr6D 91.726 979 44 7 627 1572 472510959 472511933 0.000000e+00 1325.0
15 TraesCS7A01G463100 chr6D 91.684 974 46 8 630 1572 306318200 306317231 0.000000e+00 1317.0
16 TraesCS7A01G463100 chr6D 91.590 975 45 9 631 1572 7981042 7980072 0.000000e+00 1312.0
17 TraesCS7A01G463100 chr6D 91.246 971 53 7 630 1572 367564538 367563572 0.000000e+00 1293.0
18 TraesCS7A01G463100 chr6D 91.066 985 41 13 631 1572 29978789 29977809 0.000000e+00 1288.0
19 TraesCS7A01G463100 chr6D 92.181 243 15 4 617 857 29961863 29962103 1.150000e-89 340.0
20 TraesCS7A01G463100 chr3D 93.713 1702 85 14 1568 3266 574855771 574854089 0.000000e+00 2531.0
21 TraesCS7A01G463100 chr3D 94.348 230 11 2 629 857 11281126 11280898 5.310000e-93 351.0
22 TraesCS7A01G463100 chr3D 92.982 228 14 2 631 857 359629775 359629549 6.920000e-87 331.0
23 TraesCS7A01G463100 chr1D 93.596 1702 87 14 1568 3266 22576359 22574677 0.000000e+00 2519.0
24 TraesCS7A01G463100 chr1D 92.016 977 42 9 628 1572 475528300 475527328 0.000000e+00 1339.0
25 TraesCS7A01G463100 chr1D 90.844 972 48 9 631 1572 110904251 110903291 0.000000e+00 1264.0
26 TraesCS7A01G463100 chr1D 90.182 988 51 22 625 1572 420011146 420010165 0.000000e+00 1245.0
27 TraesCS7A01G463100 chr4D 93.482 1703 88 15 1568 3266 398985327 398983644 0.000000e+00 2508.0
28 TraesCS7A01G463100 chr4D 91.744 969 51 6 630 1572 428529858 428530823 0.000000e+00 1319.0
29 TraesCS7A01G463100 chr4D 90.355 985 51 12 626 1572 436933706 436934684 0.000000e+00 1253.0
30 TraesCS7A01G463100 chr4D 92.083 240 15 4 620 857 417395022 417394785 5.350000e-88 335.0
31 TraesCS7A01G463100 chr2D 92.037 967 44 12 631 1572 634824565 634823607 0.000000e+00 1328.0
32 TraesCS7A01G463100 chr2D 91.399 965 56 11 630 1572 382702779 382701820 0.000000e+00 1297.0
33 TraesCS7A01G463100 chr7B 90.750 973 53 9 631 1572 634903712 634904678 0.000000e+00 1264.0
34 TraesCS7A01G463100 chr7B 84.875 562 38 14 1 525 626239172 626238621 1.060000e-144 523.0
35 TraesCS7A01G463100 chr3B 85.622 932 75 24 631 1533 795798842 795797941 0.000000e+00 924.0
36 TraesCS7A01G463100 chr2A 93.913 230 12 2 629 857 688781900 688781672 2.470000e-91 346.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G463100 chr7A 659550289 659553633 3344 True 6178 6178 100.000 1 3345 1 chr7A.!!$R2 3344
1 TraesCS7A01G463100 chr7D 608522185 608524704 2519 True 3504 3504 91.859 744 3266 1 chr7D.!!$R5 2522
2 TraesCS7A01G463100 chr7D 36176500 36177460 960 True 1319 1319 91.822 631 1571 1 chr7D.!!$R1 940
3 TraesCS7A01G463100 chr7D 245401457 245402431 974 True 1271 1271 90.826 631 1572 1 chr7D.!!$R2 941
4 TraesCS7A01G463100 chr7D 570654492 570655120 628 True 782 782 89.236 1 631 1 chr7D.!!$R3 630
5 TraesCS7A01G463100 chr7D 570663236 570663837 601 True 614 614 85.531 1 602 1 chr7D.!!$R4 601
6 TraesCS7A01G463100 chr5D 480821538 480823221 1683 True 2553 2553 93.948 1568 3266 1 chr5D.!!$R3 1698
7 TraesCS7A01G463100 chr5D 244411616 244413299 1683 True 2519 2519 93.596 1568 3266 1 chr5D.!!$R1 1698
8 TraesCS7A01G463100 chr5D 260687242 260688924 1682 True 2514 2514 93.537 1568 3266 1 chr5D.!!$R2 1698
9 TraesCS7A01G463100 chr5D 565816840 565818522 1682 False 2514 2514 93.533 1568 3266 1 chr5D.!!$F2 1698
10 TraesCS7A01G463100 chr6D 51500502 51502184 1682 False 2514 2514 93.537 1568 3266 1 chr6D.!!$F2 1698
11 TraesCS7A01G463100 chr6D 472510959 472513680 2721 False 1928 2531 92.718 627 3266 2 chr6D.!!$F3 2639
12 TraesCS7A01G463100 chr6D 306317231 306318200 969 True 1317 1317 91.684 630 1572 1 chr6D.!!$R3 942
13 TraesCS7A01G463100 chr6D 7980072 7981042 970 True 1312 1312 91.590 631 1572 1 chr6D.!!$R1 941
14 TraesCS7A01G463100 chr6D 367563572 367564538 966 True 1293 1293 91.246 630 1572 1 chr6D.!!$R4 942
15 TraesCS7A01G463100 chr6D 29977809 29978789 980 True 1288 1288 91.066 631 1572 1 chr6D.!!$R2 941
16 TraesCS7A01G463100 chr3D 574854089 574855771 1682 True 2531 2531 93.713 1568 3266 1 chr3D.!!$R3 1698
17 TraesCS7A01G463100 chr1D 22574677 22576359 1682 True 2519 2519 93.596 1568 3266 1 chr1D.!!$R1 1698
18 TraesCS7A01G463100 chr1D 475527328 475528300 972 True 1339 1339 92.016 628 1572 1 chr1D.!!$R4 944
19 TraesCS7A01G463100 chr1D 110903291 110904251 960 True 1264 1264 90.844 631 1572 1 chr1D.!!$R2 941
20 TraesCS7A01G463100 chr1D 420010165 420011146 981 True 1245 1245 90.182 625 1572 1 chr1D.!!$R3 947
21 TraesCS7A01G463100 chr4D 398983644 398985327 1683 True 2508 2508 93.482 1568 3266 1 chr4D.!!$R1 1698
22 TraesCS7A01G463100 chr4D 428529858 428530823 965 False 1319 1319 91.744 630 1572 1 chr4D.!!$F1 942
23 TraesCS7A01G463100 chr4D 436933706 436934684 978 False 1253 1253 90.355 626 1572 1 chr4D.!!$F2 946
24 TraesCS7A01G463100 chr2D 634823607 634824565 958 True 1328 1328 92.037 631 1572 1 chr2D.!!$R2 941
25 TraesCS7A01G463100 chr2D 382701820 382702779 959 True 1297 1297 91.399 630 1572 1 chr2D.!!$R1 942
26 TraesCS7A01G463100 chr7B 634903712 634904678 966 False 1264 1264 90.750 631 1572 1 chr7B.!!$F1 941
27 TraesCS7A01G463100 chr7B 626238621 626239172 551 True 523 523 84.875 1 525 1 chr7B.!!$R1 524
28 TraesCS7A01G463100 chr3B 795797941 795798842 901 True 924 924 85.622 631 1533 1 chr3B.!!$R1 902

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 148 0.037326 CTTACCACCGCTCTTGCTGA 60.037 55.0 0.00 0.0 36.97 4.26 F
1380 1492 0.112995 TGTGGCCAGATGGAGCTTTT 59.887 50.0 5.11 0.0 37.39 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1832 2074 0.257039 AGAATTGTAGGCCAGGGCTG 59.743 55.0 26.01 0.0 39.30 4.85 R
2897 3143 0.106868 CAGCTCCCAATCTGATGGCA 60.107 55.0 0.00 0.0 39.26 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 8.695456 ACCAACAAAATGTTAGAGATTCACTTT 58.305 29.630 0.00 0.00 38.77 2.66
137 143 1.374252 CGTGCTTACCACCGCTCTT 60.374 57.895 0.00 0.00 41.53 2.85
142 148 0.037326 CTTACCACCGCTCTTGCTGA 60.037 55.000 0.00 0.00 36.97 4.26
159 165 0.737367 TGACGGCTTTCTGCAGATCG 60.737 55.000 19.04 19.71 45.15 3.69
168 174 1.026718 TCTGCAGATCGAGACGAGCA 61.027 55.000 13.74 8.77 45.07 4.26
220 226 1.751351 TCTGCGCAGTAGTCATAGCTT 59.249 47.619 34.70 0.00 42.21 3.74
224 230 2.112522 CGCAGTAGTCATAGCTTGTCG 58.887 52.381 0.00 0.00 0.00 4.35
228 234 3.378742 CAGTAGTCATAGCTTGTCGGACT 59.621 47.826 9.88 0.97 41.37 3.85
235 241 2.156343 AGCTTGTCGGACTTCAGAAC 57.844 50.000 9.88 0.00 0.00 3.01
238 244 2.872038 GCTTGTCGGACTTCAGAACCAT 60.872 50.000 9.88 0.00 0.00 3.55
267 273 3.321111 GGCAAGAATAGATACACGGGAGA 59.679 47.826 0.00 0.00 0.00 3.71
295 301 2.272146 GGCCTTTGCATCGGAGGA 59.728 61.111 0.00 0.00 40.13 3.71
296 302 1.821332 GGCCTTTGCATCGGAGGAG 60.821 63.158 0.00 0.00 40.13 3.69
297 303 1.821332 GCCTTTGCATCGGAGGAGG 60.821 63.158 6.01 0.00 37.47 4.30
327 334 0.331278 CCTGAGTTTGGCCATGGGTA 59.669 55.000 15.13 0.00 0.00 3.69
361 368 5.938322 AGCAGTTTGTGACATAAAATACCG 58.062 37.500 0.00 0.00 0.00 4.02
362 369 5.092781 GCAGTTTGTGACATAAAATACCGG 58.907 41.667 0.00 0.00 0.00 5.28
363 370 5.636837 CAGTTTGTGACATAAAATACCGGG 58.363 41.667 6.32 0.00 0.00 5.73
364 371 5.182380 CAGTTTGTGACATAAAATACCGGGT 59.818 40.000 6.32 4.46 0.00 5.28
365 372 5.771165 AGTTTGTGACATAAAATACCGGGTT 59.229 36.000 4.31 0.00 0.00 4.11
366 373 6.265876 AGTTTGTGACATAAAATACCGGGTTT 59.734 34.615 4.31 3.50 0.00 3.27
367 374 5.883503 TGTGACATAAAATACCGGGTTTC 57.116 39.130 4.31 0.00 0.00 2.78
368 375 5.562635 TGTGACATAAAATACCGGGTTTCT 58.437 37.500 4.31 1.16 0.00 2.52
369 376 6.005198 TGTGACATAAAATACCGGGTTTCTT 58.995 36.000 4.31 0.00 0.00 2.52
370 377 6.072397 TGTGACATAAAATACCGGGTTTCTTG 60.072 38.462 4.31 10.08 0.00 3.02
371 378 6.149807 GTGACATAAAATACCGGGTTTCTTGA 59.850 38.462 4.31 0.00 0.00 3.02
372 379 6.373216 TGACATAAAATACCGGGTTTCTTGAG 59.627 38.462 4.31 0.00 0.00 3.02
373 380 5.650703 ACATAAAATACCGGGTTTCTTGAGG 59.349 40.000 4.31 0.00 0.00 3.86
374 381 2.801077 AATACCGGGTTTCTTGAGGG 57.199 50.000 4.31 0.00 0.00 4.30
375 382 1.665137 ATACCGGGTTTCTTGAGGGT 58.335 50.000 4.31 0.00 0.00 4.34
376 383 2.323999 TACCGGGTTTCTTGAGGGTA 57.676 50.000 4.31 0.00 0.00 3.69
377 384 1.437397 ACCGGGTTTCTTGAGGGTAA 58.563 50.000 6.32 0.00 0.00 2.85
378 385 1.350019 ACCGGGTTTCTTGAGGGTAAG 59.650 52.381 6.32 0.00 0.00 2.34
379 386 1.450025 CGGGTTTCTTGAGGGTAAGC 58.550 55.000 0.00 0.00 0.00 3.09
380 387 1.271163 CGGGTTTCTTGAGGGTAAGCA 60.271 52.381 0.00 0.00 0.00 3.91
381 388 2.618045 CGGGTTTCTTGAGGGTAAGCAT 60.618 50.000 0.00 0.00 0.00 3.79
382 389 3.431415 GGGTTTCTTGAGGGTAAGCATT 58.569 45.455 0.00 0.00 0.00 3.56
383 390 4.595986 GGGTTTCTTGAGGGTAAGCATTA 58.404 43.478 0.00 0.00 0.00 1.90
384 391 5.201243 GGGTTTCTTGAGGGTAAGCATTAT 58.799 41.667 0.00 0.00 30.46 1.28
385 392 6.362248 GGGTTTCTTGAGGGTAAGCATTATA 58.638 40.000 0.00 0.00 30.46 0.98
386 393 6.262496 GGGTTTCTTGAGGGTAAGCATTATAC 59.738 42.308 0.00 0.00 30.46 1.47
387 394 6.826741 GGTTTCTTGAGGGTAAGCATTATACA 59.173 38.462 0.00 0.00 30.46 2.29
388 395 7.338449 GGTTTCTTGAGGGTAAGCATTATACAA 59.662 37.037 0.00 0.00 30.46 2.41
389 396 8.736244 GTTTCTTGAGGGTAAGCATTATACAAA 58.264 33.333 0.00 0.00 30.46 2.83
390 397 8.871629 TTCTTGAGGGTAAGCATTATACAAAA 57.128 30.769 0.00 0.00 30.46 2.44
391 398 9.474313 TTCTTGAGGGTAAGCATTATACAAAAT 57.526 29.630 0.00 0.00 30.46 1.82
392 399 9.120538 TCTTGAGGGTAAGCATTATACAAAATC 57.879 33.333 0.00 0.00 30.46 2.17
393 400 8.815565 TTGAGGGTAAGCATTATACAAAATCA 57.184 30.769 0.00 0.00 30.46 2.57
394 401 8.220755 TGAGGGTAAGCATTATACAAAATCAC 57.779 34.615 0.00 0.00 30.46 3.06
395 402 7.831690 TGAGGGTAAGCATTATACAAAATCACA 59.168 33.333 0.00 0.00 30.46 3.58
396 403 7.996385 AGGGTAAGCATTATACAAAATCACAC 58.004 34.615 0.00 0.00 30.46 3.82
397 404 7.068226 AGGGTAAGCATTATACAAAATCACACC 59.932 37.037 0.00 0.00 30.46 4.16
398 405 7.147983 GGGTAAGCATTATACAAAATCACACCA 60.148 37.037 0.00 0.00 30.46 4.17
399 406 7.915397 GGTAAGCATTATACAAAATCACACCAG 59.085 37.037 0.00 0.00 30.46 4.00
400 407 7.701539 AAGCATTATACAAAATCACACCAGA 57.298 32.000 0.00 0.00 0.00 3.86
401 408 7.701539 AGCATTATACAAAATCACACCAGAA 57.298 32.000 0.00 0.00 0.00 3.02
402 409 8.121305 AGCATTATACAAAATCACACCAGAAA 57.879 30.769 0.00 0.00 0.00 2.52
403 410 8.584157 AGCATTATACAAAATCACACCAGAAAA 58.416 29.630 0.00 0.00 0.00 2.29
404 411 8.863049 GCATTATACAAAATCACACCAGAAAAG 58.137 33.333 0.00 0.00 0.00 2.27
405 412 8.863049 CATTATACAAAATCACACCAGAAAAGC 58.137 33.333 0.00 0.00 0.00 3.51
406 413 4.734398 ACAAAATCACACCAGAAAAGCA 57.266 36.364 0.00 0.00 0.00 3.91
407 414 4.685924 ACAAAATCACACCAGAAAAGCAG 58.314 39.130 0.00 0.00 0.00 4.24
408 415 4.402155 ACAAAATCACACCAGAAAAGCAGA 59.598 37.500 0.00 0.00 0.00 4.26
409 416 4.843220 AAATCACACCAGAAAAGCAGAG 57.157 40.909 0.00 0.00 0.00 3.35
410 417 3.498774 ATCACACCAGAAAAGCAGAGT 57.501 42.857 0.00 0.00 0.00 3.24
411 418 2.564771 TCACACCAGAAAAGCAGAGTG 58.435 47.619 0.00 0.00 0.00 3.51
412 419 1.002033 CACACCAGAAAAGCAGAGTGC 60.002 52.381 0.00 0.00 45.46 4.40
421 428 3.873883 GCAGAGTGCAGCGATGGC 61.874 66.667 1.46 0.00 44.26 4.40
432 439 3.568093 GCGATGGCTGTTGTGTTTT 57.432 47.368 0.00 0.00 35.83 2.43
433 440 2.697431 GCGATGGCTGTTGTGTTTTA 57.303 45.000 0.00 0.00 35.83 1.52
434 441 2.584791 GCGATGGCTGTTGTGTTTTAG 58.415 47.619 0.00 0.00 35.83 1.85
435 442 2.031157 GCGATGGCTGTTGTGTTTTAGT 60.031 45.455 0.00 0.00 35.83 2.24
436 443 3.554524 CGATGGCTGTTGTGTTTTAGTG 58.445 45.455 0.00 0.00 0.00 2.74
437 444 3.609175 CGATGGCTGTTGTGTTTTAGTGG 60.609 47.826 0.00 0.00 0.00 4.00
438 445 1.407258 TGGCTGTTGTGTTTTAGTGGC 59.593 47.619 0.00 0.00 0.00 5.01
439 446 1.269569 GGCTGTTGTGTTTTAGTGGCC 60.270 52.381 0.00 0.00 0.00 5.36
440 447 1.407258 GCTGTTGTGTTTTAGTGGCCA 59.593 47.619 0.00 0.00 0.00 5.36
441 448 2.798145 GCTGTTGTGTTTTAGTGGCCAC 60.798 50.000 29.22 29.22 0.00 5.01
442 449 2.425312 CTGTTGTGTTTTAGTGGCCACA 59.575 45.455 36.39 20.10 36.12 4.17
454 461 2.851195 GTGGCCACACAGGAATATAGG 58.149 52.381 31.23 0.00 46.90 2.57
455 462 1.142870 TGGCCACACAGGAATATAGGC 59.857 52.381 0.00 0.00 41.22 3.93
456 463 1.142870 GGCCACACAGGAATATAGGCA 59.857 52.381 0.00 0.00 42.26 4.75
457 464 2.422803 GGCCACACAGGAATATAGGCAA 60.423 50.000 0.00 0.00 42.26 4.52
458 465 3.287222 GCCACACAGGAATATAGGCAAA 58.713 45.455 0.00 0.00 41.22 3.68
459 466 3.891366 GCCACACAGGAATATAGGCAAAT 59.109 43.478 0.00 0.00 41.22 2.32
460 467 4.261741 GCCACACAGGAATATAGGCAAATG 60.262 45.833 0.00 0.00 41.22 2.32
461 468 5.132502 CCACACAGGAATATAGGCAAATGA 58.867 41.667 0.00 0.00 41.22 2.57
462 469 5.240183 CCACACAGGAATATAGGCAAATGAG 59.760 44.000 0.00 0.00 41.22 2.90
463 470 6.057533 CACACAGGAATATAGGCAAATGAGA 58.942 40.000 0.00 0.00 0.00 3.27
464 471 6.017605 CACACAGGAATATAGGCAAATGAGAC 60.018 42.308 0.00 0.00 0.00 3.36
465 472 5.178252 CACAGGAATATAGGCAAATGAGACG 59.822 44.000 0.00 0.00 0.00 4.18
466 473 5.163301 ACAGGAATATAGGCAAATGAGACGT 60.163 40.000 0.00 0.00 0.00 4.34
467 474 6.041637 ACAGGAATATAGGCAAATGAGACGTA 59.958 38.462 0.00 0.00 0.00 3.57
468 475 6.587990 CAGGAATATAGGCAAATGAGACGTAG 59.412 42.308 0.00 0.00 0.00 3.51
497 504 2.626088 GCTCCTTAGCTTTGCTTGTG 57.374 50.000 0.00 0.00 45.85 3.33
498 505 2.154462 GCTCCTTAGCTTTGCTTGTGA 58.846 47.619 0.00 0.00 45.85 3.58
499 506 2.161211 GCTCCTTAGCTTTGCTTGTGAG 59.839 50.000 0.00 3.08 45.85 3.51
500 507 3.668447 CTCCTTAGCTTTGCTTGTGAGA 58.332 45.455 0.00 0.00 40.44 3.27
501 508 4.067896 CTCCTTAGCTTTGCTTGTGAGAA 58.932 43.478 0.00 0.00 40.44 2.87
502 509 4.067896 TCCTTAGCTTTGCTTGTGAGAAG 58.932 43.478 0.00 0.00 40.44 2.85
503 510 3.365767 CCTTAGCTTTGCTTGTGAGAAGC 60.366 47.826 7.45 7.45 43.57 3.86
505 512 2.789491 GCTTTGCTTGTGAGAAGCTT 57.211 45.000 15.53 0.00 43.38 3.74
506 513 3.089573 GCTTTGCTTGTGAGAAGCTTT 57.910 42.857 15.53 0.00 43.38 3.51
507 514 3.451526 GCTTTGCTTGTGAGAAGCTTTT 58.548 40.909 15.53 0.00 43.38 2.27
508 515 4.610945 GCTTTGCTTGTGAGAAGCTTTTA 58.389 39.130 15.53 0.00 43.38 1.52
509 516 4.442403 GCTTTGCTTGTGAGAAGCTTTTAC 59.558 41.667 15.53 0.94 43.38 2.01
510 517 3.878086 TGCTTGTGAGAAGCTTTTACG 57.122 42.857 15.53 0.00 43.38 3.18
511 518 3.462982 TGCTTGTGAGAAGCTTTTACGA 58.537 40.909 15.53 0.00 43.38 3.43
512 519 3.874543 TGCTTGTGAGAAGCTTTTACGAA 59.125 39.130 15.53 0.00 43.38 3.85
513 520 4.515191 TGCTTGTGAGAAGCTTTTACGAAT 59.485 37.500 15.53 0.00 43.38 3.34
514 521 5.008613 TGCTTGTGAGAAGCTTTTACGAATT 59.991 36.000 15.53 0.00 43.38 2.17
515 522 6.203915 TGCTTGTGAGAAGCTTTTACGAATTA 59.796 34.615 15.53 0.00 43.38 1.40
516 523 7.094805 TGCTTGTGAGAAGCTTTTACGAATTAT 60.095 33.333 15.53 0.00 43.38 1.28
517 524 8.388103 GCTTGTGAGAAGCTTTTACGAATTATA 58.612 33.333 7.11 0.00 40.01 0.98
579 586 5.923733 TTTTTAGTGGGTGTGACACAATT 57.076 34.783 18.40 4.59 41.21 2.32
580 587 5.923733 TTTTAGTGGGTGTGACACAATTT 57.076 34.783 18.40 2.87 41.21 1.82
581 588 4.909696 TTAGTGGGTGTGACACAATTTG 57.090 40.909 18.40 0.00 41.21 2.32
582 589 2.733956 AGTGGGTGTGACACAATTTGT 58.266 42.857 18.40 0.00 43.10 2.83
596 603 6.866480 ACACAATTTGTCTGAATTCACAACT 58.134 32.000 3.38 0.14 29.79 3.16
597 604 7.995289 ACACAATTTGTCTGAATTCACAACTA 58.005 30.769 3.38 0.46 29.79 2.24
598 605 8.632679 ACACAATTTGTCTGAATTCACAACTAT 58.367 29.630 3.38 0.00 29.79 2.12
604 611 9.647797 TTTGTCTGAATTCACAACTATATACGT 57.352 29.630 3.38 0.00 32.19 3.57
758 768 0.798009 CAAATTGCCCGTTGCTAGCG 60.798 55.000 10.77 0.00 42.00 4.26
762 772 1.448922 TTGCCCGTTGCTAGCGTTTT 61.449 50.000 10.77 0.00 42.00 2.43
857 887 2.968206 GTTACTCGGACCGCACCT 59.032 61.111 9.66 0.00 0.00 4.00
862 902 3.883744 CTCGGACCGCACCTGCTTT 62.884 63.158 9.66 0.00 39.32 3.51
903 959 1.379176 TCCCTCTCACTCTGCTCCG 60.379 63.158 0.00 0.00 0.00 4.63
920 986 2.437359 GCTGCCCGCACTCATCTT 60.437 61.111 0.00 0.00 38.92 2.40
1093 1188 3.078837 TGGGTAAGTTTTTCGATCTGCC 58.921 45.455 0.00 0.00 0.00 4.85
1248 1355 3.187942 AGGGTTAGGGTTAGGGTTCTTC 58.812 50.000 0.00 0.00 0.00 2.87
1264 1374 3.386932 TCTTCCTGGATTGGGGAATTG 57.613 47.619 0.00 0.00 40.31 2.32
1270 1380 4.716287 TCCTGGATTGGGGAATTGATTTTC 59.284 41.667 0.00 0.00 0.00 2.29
1290 1402 6.769134 TTTCGATCTATGTCTGGTTCTGTA 57.231 37.500 0.00 0.00 0.00 2.74
1291 1403 6.769134 TTCGATCTATGTCTGGTTCTGTAA 57.231 37.500 0.00 0.00 0.00 2.41
1292 1404 6.378710 TCGATCTATGTCTGGTTCTGTAAG 57.621 41.667 0.00 0.00 0.00 2.34
1293 1405 4.979197 CGATCTATGTCTGGTTCTGTAAGC 59.021 45.833 0.00 0.00 0.00 3.09
1294 1406 5.221145 CGATCTATGTCTGGTTCTGTAAGCT 60.221 44.000 0.00 0.00 34.13 3.74
1333 1445 2.303890 TGATGTGTTCATGCAGGAGACT 59.696 45.455 0.00 0.00 36.05 3.24
1370 1482 0.250901 GCCTCTTTTCTGTGGCCAGA 60.251 55.000 5.11 2.89 45.95 3.86
1380 1492 0.112995 TGTGGCCAGATGGAGCTTTT 59.887 50.000 5.11 0.00 37.39 2.27
1533 1645 6.121776 TCTGAACCCACACATGTATTTACT 57.878 37.500 0.00 0.00 0.00 2.24
1535 1647 7.857456 TCTGAACCCACACATGTATTTACTAT 58.143 34.615 0.00 0.00 0.00 2.12
1607 1788 9.686683 GGGATATGGTACTATCAAATATGCTTT 57.313 33.333 0.00 0.00 31.01 3.51
1832 2074 2.490991 GTGTTACTGAGTGGGTTGACC 58.509 52.381 0.00 0.00 40.81 4.02
1884 2126 2.306847 GTCAAGGTTGTGGGACATGTT 58.693 47.619 0.00 0.00 44.52 2.71
1994 2236 4.457810 CATTGAGTACACAAAGCTTGTCG 58.542 43.478 9.83 0.00 43.23 4.35
2037 2279 0.639943 TGGCAGGATGGTAGGGTAGA 59.360 55.000 0.00 0.00 35.86 2.59
2074 2317 0.980423 AGGCAGTTGAGGAGGAAGAC 59.020 55.000 0.00 0.00 0.00 3.01
2075 2318 0.035915 GGCAGTTGAGGAGGAAGACC 60.036 60.000 0.00 0.00 0.00 3.85
2133 2376 2.093235 GGTTGGAGGTTCAGATGGAGAG 60.093 54.545 0.00 0.00 0.00 3.20
2155 2398 2.036346 GCTCAAACTTGCCAAGGAACAT 59.964 45.455 9.64 0.00 0.00 2.71
2208 2451 2.158475 TCAAGAACACCAGGAAGGCAAT 60.158 45.455 0.00 0.00 43.14 3.56
2219 2462 2.095461 GGAAGGCAATGAAGGAGGTTC 58.905 52.381 0.00 0.00 35.48 3.62
2245 2488 6.956497 ACAGGAGAGAGATTTGCTTAAGATT 58.044 36.000 6.67 0.00 0.00 2.40
2280 2523 0.737219 GAGCATGTGGTGAATGAGCC 59.263 55.000 0.00 0.00 0.00 4.70
2283 2526 2.108514 ATGTGGTGAATGAGCCGCG 61.109 57.895 0.00 0.00 38.05 6.46
2286 2529 2.435938 GGTGAATGAGCCGCGGAA 60.436 61.111 33.48 14.45 0.00 4.30
2287 2530 2.038269 GGTGAATGAGCCGCGGAAA 61.038 57.895 33.48 14.02 0.00 3.13
2293 2536 2.125106 GAGCCGCGGAAAGATGGT 60.125 61.111 33.48 4.66 0.00 3.55
2359 2602 3.198409 TCATGAAGTGTGTTCTGCAGT 57.802 42.857 14.67 0.00 0.00 4.40
2374 2617 3.324846 TCTGCAGTTGGTGAAGTACATCT 59.675 43.478 14.67 0.00 32.71 2.90
2487 2731 5.940192 TGCCAATGTTAAGAACTGTAGTG 57.060 39.130 0.00 0.00 0.00 2.74
2494 2738 9.366216 CAATGTTAAGAACTGTAGTGTATGCTA 57.634 33.333 0.00 0.00 0.00 3.49
2562 2806 5.755409 TCTGCCTGTATTTGAACCTCTTA 57.245 39.130 0.00 0.00 0.00 2.10
2604 2850 3.706086 TGATAAGCACAGCTGGACTATGA 59.294 43.478 19.93 4.52 39.62 2.15
2665 2911 6.428771 GTGTTTATTAGTGCTTTGTACCTGGA 59.571 38.462 0.00 0.00 0.00 3.86
2683 2929 1.818674 GGACTTTGTGGCCCAGTTATG 59.181 52.381 0.00 0.00 38.13 1.90
2687 2933 3.069443 ACTTTGTGGCCCAGTTATGTTTG 59.931 43.478 0.00 0.00 0.00 2.93
2704 2950 3.328343 TGTTTGCAAACCTAGGCCTACTA 59.672 43.478 33.33 12.26 38.11 1.82
2705 2951 4.202482 TGTTTGCAAACCTAGGCCTACTAA 60.202 41.667 33.33 12.08 38.11 2.24
2706 2952 3.622166 TGCAAACCTAGGCCTACTAAC 57.378 47.619 8.91 0.00 0.00 2.34
2707 2953 3.178865 TGCAAACCTAGGCCTACTAACT 58.821 45.455 8.91 0.00 0.00 2.24
2709 2955 3.451540 GCAAACCTAGGCCTACTAACTCT 59.548 47.826 8.91 0.00 0.00 3.24
2711 2957 5.221283 GCAAACCTAGGCCTACTAACTCTAG 60.221 48.000 8.91 0.00 0.00 2.43
2712 2958 5.990713 AACCTAGGCCTACTAACTCTAGA 57.009 43.478 8.91 0.00 31.67 2.43
2713 2959 6.533639 AACCTAGGCCTACTAACTCTAGAT 57.466 41.667 8.91 0.00 31.67 1.98
2714 2960 5.883180 ACCTAGGCCTACTAACTCTAGATG 58.117 45.833 8.91 0.00 31.67 2.90
2715 2961 4.703093 CCTAGGCCTACTAACTCTAGATGC 59.297 50.000 8.91 0.00 31.67 3.91
2716 2962 3.502356 AGGCCTACTAACTCTAGATGCC 58.498 50.000 1.29 0.00 37.11 4.40
2717 2963 3.141272 AGGCCTACTAACTCTAGATGCCT 59.859 47.826 1.29 0.00 39.68 4.75
2740 2986 4.039730 TCTCCACTGCTCATAAATAGCCTC 59.960 45.833 0.00 0.00 39.30 4.70
2760 3006 4.354943 CCACCCACCCTCCTCCCT 62.355 72.222 0.00 0.00 0.00 4.20
2761 3007 3.011517 CACCCACCCTCCTCCCTG 61.012 72.222 0.00 0.00 0.00 4.45
2770 3016 1.268283 CCTCCTCCCTGTCCAGAACC 61.268 65.000 0.00 0.00 0.00 3.62
2889 3135 2.949106 CAAAGGGCTCACTGTGCG 59.051 61.111 2.12 0.00 0.00 5.34
2896 3142 4.624364 CTCACTGTGCGGTGCCCA 62.624 66.667 2.12 0.00 37.16 5.36
2897 3143 3.907260 CTCACTGTGCGGTGCCCAT 62.907 63.158 2.12 0.00 37.16 4.00
2898 3144 3.740397 CACTGTGCGGTGCCCATG 61.740 66.667 0.00 0.00 0.00 3.66
2905 3151 3.214123 CGGTGCCCATGCCATCAG 61.214 66.667 0.00 0.00 36.33 2.90
2906 3152 2.276409 GGTGCCCATGCCATCAGA 59.724 61.111 0.00 0.00 36.33 3.27
2907 3153 1.152610 GGTGCCCATGCCATCAGAT 60.153 57.895 0.00 0.00 36.33 2.90
2962 3208 3.064900 AGATCTTGGAGAAGTGCAACC 57.935 47.619 0.00 0.00 37.80 3.77
2965 3211 1.214175 TCTTGGAGAAGTGCAACCCAA 59.786 47.619 0.00 0.00 37.80 4.12
2974 3220 2.949447 AGTGCAACCCAAATGAGTTCT 58.051 42.857 0.00 0.00 37.80 3.01
3023 3269 3.382278 AGAGCTCAGGGAAGATCATCAA 58.618 45.455 17.77 0.00 34.11 2.57
3034 3280 2.053244 AGATCATCAAGTGGGCTAGGG 58.947 52.381 0.00 0.00 0.00 3.53
3035 3281 0.475906 ATCATCAAGTGGGCTAGGGC 59.524 55.000 0.00 0.00 37.82 5.19
3050 3296 1.185618 AGGGCACAAGCAGTACTCGA 61.186 55.000 0.00 0.00 44.61 4.04
3080 3326 1.055849 TCTACCAGAGCAAAGTGGCA 58.944 50.000 0.00 0.00 37.34 4.92
3081 3327 1.160137 CTACCAGAGCAAAGTGGCAC 58.840 55.000 10.29 10.29 37.34 5.01
3124 3371 7.027760 CGATTGAGAGTTGTTGCTAGTAGTTA 58.972 38.462 0.00 0.00 0.00 2.24
3160 3456 5.053978 TGAGAGTCTGAGCTATGTATCCA 57.946 43.478 0.00 0.00 0.00 3.41
3219 3534 7.581814 TGTTTGGATGGTGGAATCTATGAATA 58.418 34.615 0.00 0.00 0.00 1.75
3266 3581 5.737860 TGCATGAGTGTTGTCTGAATCTAT 58.262 37.500 0.00 0.00 0.00 1.98
3267 3582 5.814188 TGCATGAGTGTTGTCTGAATCTATC 59.186 40.000 0.00 0.00 0.00 2.08
3269 3584 6.314648 GCATGAGTGTTGTCTGAATCTATCAA 59.685 38.462 0.00 0.00 37.67 2.57
3270 3585 7.012138 GCATGAGTGTTGTCTGAATCTATCAAT 59.988 37.037 0.00 0.00 37.67 2.57
3271 3586 8.549548 CATGAGTGTTGTCTGAATCTATCAATC 58.450 37.037 0.00 0.00 37.67 2.67
3275 3590 8.944029 AGTGTTGTCTGAATCTATCAATCTTTG 58.056 33.333 0.00 0.00 37.67 2.77
3276 3591 7.695618 GTGTTGTCTGAATCTATCAATCTTTGC 59.304 37.037 0.00 0.00 37.67 3.68
3278 3593 8.404000 GTTGTCTGAATCTATCAATCTTTGCAT 58.596 33.333 0.00 0.00 37.67 3.96
3279 3594 8.151141 TGTCTGAATCTATCAATCTTTGCATC 57.849 34.615 0.00 0.00 37.67 3.91
3283 3598 9.269453 CTGAATCTATCAATCTTTGCATCAGTA 57.731 33.333 0.00 0.00 37.67 2.74
3289 3604 9.459640 CTATCAATCTTTGCATCAGTATTTTGG 57.540 33.333 0.00 0.00 0.00 3.28
3290 3605 6.632909 TCAATCTTTGCATCAGTATTTTGGG 58.367 36.000 0.00 0.00 0.00 4.12
3291 3606 6.436847 TCAATCTTTGCATCAGTATTTTGGGA 59.563 34.615 0.00 0.00 0.00 4.37
3292 3607 7.124599 TCAATCTTTGCATCAGTATTTTGGGAT 59.875 33.333 0.00 0.00 0.00 3.85
3293 3608 6.855763 TCTTTGCATCAGTATTTTGGGATT 57.144 33.333 0.00 0.00 0.00 3.01
3294 3609 6.866480 TCTTTGCATCAGTATTTTGGGATTC 58.134 36.000 0.00 0.00 0.00 2.52
3295 3610 6.664816 TCTTTGCATCAGTATTTTGGGATTCT 59.335 34.615 0.00 0.00 0.00 2.40
3296 3611 7.833682 TCTTTGCATCAGTATTTTGGGATTCTA 59.166 33.333 0.00 0.00 0.00 2.10
3297 3612 8.537728 TTTGCATCAGTATTTTGGGATTCTAT 57.462 30.769 0.00 0.00 0.00 1.98
3298 3613 7.750229 TGCATCAGTATTTTGGGATTCTATC 57.250 36.000 0.00 0.00 0.00 2.08
3300 3615 7.779326 TGCATCAGTATTTTGGGATTCTATCAA 59.221 33.333 0.00 0.00 0.00 2.57
3301 3616 8.800332 GCATCAGTATTTTGGGATTCTATCAAT 58.200 33.333 0.00 0.00 0.00 2.57
3310 3625 8.924511 TTTGGGATTCTATCAATCTATCAACC 57.075 34.615 0.00 0.00 0.00 3.77
3311 3626 7.878621 TGGGATTCTATCAATCTATCAACCT 57.121 36.000 0.00 0.00 0.00 3.50
3312 3627 7.911651 TGGGATTCTATCAATCTATCAACCTC 58.088 38.462 0.00 0.00 0.00 3.85
3313 3628 7.513781 TGGGATTCTATCAATCTATCAACCTCA 59.486 37.037 0.00 0.00 0.00 3.86
3314 3629 7.821846 GGGATTCTATCAATCTATCAACCTCAC 59.178 40.741 0.00 0.00 0.00 3.51
3315 3630 7.821846 GGATTCTATCAATCTATCAACCTCACC 59.178 40.741 0.00 0.00 0.00 4.02
3316 3631 7.675161 TTCTATCAATCTATCAACCTCACCA 57.325 36.000 0.00 0.00 0.00 4.17
3317 3632 7.675161 TCTATCAATCTATCAACCTCACCAA 57.325 36.000 0.00 0.00 0.00 3.67
3318 3633 7.730084 TCTATCAATCTATCAACCTCACCAAG 58.270 38.462 0.00 0.00 0.00 3.61
3319 3634 4.517285 TCAATCTATCAACCTCACCAAGC 58.483 43.478 0.00 0.00 0.00 4.01
3320 3635 4.225942 TCAATCTATCAACCTCACCAAGCT 59.774 41.667 0.00 0.00 0.00 3.74
3321 3636 3.616956 TCTATCAACCTCACCAAGCTG 57.383 47.619 0.00 0.00 0.00 4.24
3322 3637 2.012673 CTATCAACCTCACCAAGCTGC 58.987 52.381 0.00 0.00 0.00 5.25
3323 3638 0.610232 ATCAACCTCACCAAGCTGCC 60.610 55.000 0.00 0.00 0.00 4.85
3324 3639 1.529010 CAACCTCACCAAGCTGCCA 60.529 57.895 0.00 0.00 0.00 4.92
3325 3640 1.108727 CAACCTCACCAAGCTGCCAA 61.109 55.000 0.00 0.00 0.00 4.52
3326 3641 0.396974 AACCTCACCAAGCTGCCAAA 60.397 50.000 0.00 0.00 0.00 3.28
3327 3642 1.109323 ACCTCACCAAGCTGCCAAAC 61.109 55.000 0.00 0.00 0.00 2.93
3328 3643 1.662044 CTCACCAAGCTGCCAAACC 59.338 57.895 0.00 0.00 0.00 3.27
3329 3644 1.076412 TCACCAAGCTGCCAAACCA 60.076 52.632 0.00 0.00 0.00 3.67
3330 3645 1.108727 TCACCAAGCTGCCAAACCAG 61.109 55.000 0.00 0.00 35.93 4.00
3331 3646 1.108727 CACCAAGCTGCCAAACCAGA 61.109 55.000 0.00 0.00 34.77 3.86
3332 3647 0.396974 ACCAAGCTGCCAAACCAGAA 60.397 50.000 0.00 0.00 34.77 3.02
3333 3648 0.316204 CCAAGCTGCCAAACCAGAAG 59.684 55.000 0.00 0.00 34.77 2.85
3334 3649 1.035139 CAAGCTGCCAAACCAGAAGT 58.965 50.000 0.00 0.00 34.77 3.01
3335 3650 1.000938 CAAGCTGCCAAACCAGAAGTC 60.001 52.381 0.00 0.00 34.77 3.01
3336 3651 0.183492 AGCTGCCAAACCAGAAGTCA 59.817 50.000 0.00 0.00 34.77 3.41
3337 3652 0.312102 GCTGCCAAACCAGAAGTCAC 59.688 55.000 0.00 0.00 34.77 3.67
3338 3653 1.679139 CTGCCAAACCAGAAGTCACA 58.321 50.000 0.00 0.00 34.77 3.58
3339 3654 2.023673 CTGCCAAACCAGAAGTCACAA 58.976 47.619 0.00 0.00 34.77 3.33
3340 3655 2.426738 CTGCCAAACCAGAAGTCACAAA 59.573 45.455 0.00 0.00 34.77 2.83
3341 3656 2.165437 TGCCAAACCAGAAGTCACAAAC 59.835 45.455 0.00 0.00 0.00 2.93
3342 3657 2.165437 GCCAAACCAGAAGTCACAAACA 59.835 45.455 0.00 0.00 0.00 2.83
3343 3658 3.769536 CCAAACCAGAAGTCACAAACAC 58.230 45.455 0.00 0.00 0.00 3.32
3344 3659 3.443681 CCAAACCAGAAGTCACAAACACT 59.556 43.478 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.246360 ATCAGACGATGTGAACGCCA 59.754 50.000 0.00 0.00 0.00 5.69
14 15 3.859386 TGAATGATCAGACGATGTGAACG 59.141 43.478 0.09 0.00 29.66 3.95
48 49 9.736023 GACAAAGTGAATCTCTAACATTTTGTT 57.264 29.630 16.37 0.00 46.24 2.83
56 57 5.635700 AGAAGCGACAAAGTGAATCTCTAAC 59.364 40.000 0.00 0.00 0.00 2.34
58 59 5.184096 AGAGAAGCGACAAAGTGAATCTCTA 59.816 40.000 0.00 0.00 40.28 2.43
65 66 4.876107 AGAAAAAGAGAAGCGACAAAGTGA 59.124 37.500 0.00 0.00 0.00 3.41
71 72 5.009710 TCACTAGAGAAAAAGAGAAGCGACA 59.990 40.000 0.00 0.00 0.00 4.35
110 112 3.742013 CGGTGGTAAGCACGGGTATAAAT 60.742 47.826 0.00 0.00 0.00 1.40
142 148 0.459237 CTCGATCTGCAGAAAGCCGT 60.459 55.000 22.50 1.97 44.83 5.68
146 152 2.449189 CTCGTCTCGATCTGCAGAAAG 58.551 52.381 22.50 17.73 34.61 2.62
159 165 2.370281 TTTGGATCACTGCTCGTCTC 57.630 50.000 0.00 0.00 0.00 3.36
168 174 5.503927 AGCTATTCACACATTTGGATCACT 58.496 37.500 0.00 0.00 0.00 3.41
220 226 4.503910 CATTATGGTTCTGAAGTCCGACA 58.496 43.478 0.40 0.00 0.00 4.35
235 241 6.942005 TGTATCTATTCTTGCCACCATTATGG 59.058 38.462 10.08 10.08 45.02 2.74
238 244 5.989168 CGTGTATCTATTCTTGCCACCATTA 59.011 40.000 0.00 0.00 0.00 1.90
267 273 1.076024 TGCAAAGGCCAGGAAGATCTT 59.924 47.619 7.95 7.95 40.13 2.40
297 303 2.146073 AAACTCAGGCGGCATGTTGC 62.146 55.000 14.79 0.00 44.08 4.17
302 308 3.064324 GCCAAACTCAGGCGGCAT 61.064 61.111 13.08 0.00 44.25 4.40
327 334 7.228314 TGTCACAAACTGCTAGACTAACTAT 57.772 36.000 0.00 0.00 0.00 2.12
361 368 2.579410 TGCTTACCCTCAAGAAACCC 57.421 50.000 0.00 0.00 0.00 4.11
362 369 6.826741 TGTATAATGCTTACCCTCAAGAAACC 59.173 38.462 0.00 0.00 0.00 3.27
363 370 7.859325 TGTATAATGCTTACCCTCAAGAAAC 57.141 36.000 0.00 0.00 0.00 2.78
364 371 8.871629 TTTGTATAATGCTTACCCTCAAGAAA 57.128 30.769 0.00 0.00 0.00 2.52
365 372 8.871629 TTTTGTATAATGCTTACCCTCAAGAA 57.128 30.769 0.00 0.00 0.00 2.52
366 373 9.120538 GATTTTGTATAATGCTTACCCTCAAGA 57.879 33.333 0.00 0.00 0.00 3.02
367 374 8.902806 TGATTTTGTATAATGCTTACCCTCAAG 58.097 33.333 0.00 0.00 0.00 3.02
368 375 8.682710 GTGATTTTGTATAATGCTTACCCTCAA 58.317 33.333 0.00 0.00 0.00 3.02
369 376 7.831690 TGTGATTTTGTATAATGCTTACCCTCA 59.168 33.333 0.00 0.00 0.00 3.86
370 377 8.129211 GTGTGATTTTGTATAATGCTTACCCTC 58.871 37.037 0.00 0.00 0.00 4.30
371 378 7.068226 GGTGTGATTTTGTATAATGCTTACCCT 59.932 37.037 0.00 0.00 0.00 4.34
372 379 7.147983 TGGTGTGATTTTGTATAATGCTTACCC 60.148 37.037 0.00 0.00 0.00 3.69
373 380 7.767261 TGGTGTGATTTTGTATAATGCTTACC 58.233 34.615 0.00 0.00 0.00 2.85
374 381 8.673711 TCTGGTGTGATTTTGTATAATGCTTAC 58.326 33.333 0.00 0.00 0.00 2.34
375 382 8.800370 TCTGGTGTGATTTTGTATAATGCTTA 57.200 30.769 0.00 0.00 0.00 3.09
376 383 7.701539 TCTGGTGTGATTTTGTATAATGCTT 57.298 32.000 0.00 0.00 0.00 3.91
377 384 7.701539 TTCTGGTGTGATTTTGTATAATGCT 57.298 32.000 0.00 0.00 0.00 3.79
378 385 8.755696 TTTTCTGGTGTGATTTTGTATAATGC 57.244 30.769 0.00 0.00 0.00 3.56
379 386 8.863049 GCTTTTCTGGTGTGATTTTGTATAATG 58.137 33.333 0.00 0.00 0.00 1.90
380 387 8.584157 TGCTTTTCTGGTGTGATTTTGTATAAT 58.416 29.630 0.00 0.00 0.00 1.28
381 388 7.946207 TGCTTTTCTGGTGTGATTTTGTATAA 58.054 30.769 0.00 0.00 0.00 0.98
382 389 7.446931 TCTGCTTTTCTGGTGTGATTTTGTATA 59.553 33.333 0.00 0.00 0.00 1.47
383 390 6.265196 TCTGCTTTTCTGGTGTGATTTTGTAT 59.735 34.615 0.00 0.00 0.00 2.29
384 391 5.592282 TCTGCTTTTCTGGTGTGATTTTGTA 59.408 36.000 0.00 0.00 0.00 2.41
385 392 4.402155 TCTGCTTTTCTGGTGTGATTTTGT 59.598 37.500 0.00 0.00 0.00 2.83
386 393 4.935702 TCTGCTTTTCTGGTGTGATTTTG 58.064 39.130 0.00 0.00 0.00 2.44
387 394 4.646492 ACTCTGCTTTTCTGGTGTGATTTT 59.354 37.500 0.00 0.00 0.00 1.82
388 395 4.037208 CACTCTGCTTTTCTGGTGTGATTT 59.963 41.667 0.00 0.00 0.00 2.17
389 396 3.567164 CACTCTGCTTTTCTGGTGTGATT 59.433 43.478 0.00 0.00 0.00 2.57
390 397 3.144506 CACTCTGCTTTTCTGGTGTGAT 58.855 45.455 0.00 0.00 0.00 3.06
391 398 2.564771 CACTCTGCTTTTCTGGTGTGA 58.435 47.619 0.00 0.00 0.00 3.58
392 399 1.002033 GCACTCTGCTTTTCTGGTGTG 60.002 52.381 0.00 0.00 40.96 3.82
393 400 1.312815 GCACTCTGCTTTTCTGGTGT 58.687 50.000 0.00 0.00 40.96 4.16
394 401 1.266175 CTGCACTCTGCTTTTCTGGTG 59.734 52.381 0.00 0.00 45.31 4.17
395 402 1.602311 CTGCACTCTGCTTTTCTGGT 58.398 50.000 0.00 0.00 45.31 4.00
396 403 0.240411 GCTGCACTCTGCTTTTCTGG 59.760 55.000 0.00 0.00 45.31 3.86
397 404 0.110328 CGCTGCACTCTGCTTTTCTG 60.110 55.000 0.00 0.00 45.31 3.02
398 405 0.250038 TCGCTGCACTCTGCTTTTCT 60.250 50.000 0.00 0.00 45.31 2.52
399 406 0.801251 ATCGCTGCACTCTGCTTTTC 59.199 50.000 0.00 0.00 45.31 2.29
400 407 0.520404 CATCGCTGCACTCTGCTTTT 59.480 50.000 0.00 0.00 45.31 2.27
401 408 1.303799 CCATCGCTGCACTCTGCTTT 61.304 55.000 0.00 0.00 45.31 3.51
402 409 1.744368 CCATCGCTGCACTCTGCTT 60.744 57.895 0.00 0.00 45.31 3.91
403 410 2.125229 CCATCGCTGCACTCTGCT 60.125 61.111 0.00 0.00 45.31 4.24
404 411 3.873883 GCCATCGCTGCACTCTGC 61.874 66.667 0.00 0.00 45.29 4.26
405 412 2.125229 AGCCATCGCTGCACTCTG 60.125 61.111 0.00 0.00 46.19 3.35
414 421 2.031157 ACTAAAACACAACAGCCATCGC 60.031 45.455 0.00 0.00 0.00 4.58
415 422 3.554524 CACTAAAACACAACAGCCATCG 58.445 45.455 0.00 0.00 0.00 3.84
416 423 3.857010 GCCACTAAAACACAACAGCCATC 60.857 47.826 0.00 0.00 0.00 3.51
417 424 2.035832 GCCACTAAAACACAACAGCCAT 59.964 45.455 0.00 0.00 0.00 4.40
418 425 1.407258 GCCACTAAAACACAACAGCCA 59.593 47.619 0.00 0.00 0.00 4.75
419 426 1.269569 GGCCACTAAAACACAACAGCC 60.270 52.381 0.00 0.00 0.00 4.85
420 427 1.407258 TGGCCACTAAAACACAACAGC 59.593 47.619 0.00 0.00 0.00 4.40
421 428 2.425312 TGTGGCCACTAAAACACAACAG 59.575 45.455 34.75 0.00 40.50 3.16
422 429 2.164624 GTGTGGCCACTAAAACACAACA 59.835 45.455 34.75 8.85 44.41 3.33
423 430 2.804647 GTGTGGCCACTAAAACACAAC 58.195 47.619 34.75 18.27 44.41 3.32
426 433 1.336755 CCTGTGTGGCCACTAAAACAC 59.663 52.381 34.75 23.61 42.34 3.32
427 434 1.213182 TCCTGTGTGGCCACTAAAACA 59.787 47.619 34.75 27.55 42.34 2.83
428 435 1.975660 TCCTGTGTGGCCACTAAAAC 58.024 50.000 34.75 24.64 42.34 2.43
429 436 2.738587 TTCCTGTGTGGCCACTAAAA 57.261 45.000 34.75 18.86 42.34 1.52
430 437 2.969821 ATTCCTGTGTGGCCACTAAA 57.030 45.000 34.75 20.84 42.34 1.85
431 438 4.102524 CCTATATTCCTGTGTGGCCACTAA 59.897 45.833 34.75 21.92 42.34 2.24
432 439 3.646162 CCTATATTCCTGTGTGGCCACTA 59.354 47.826 34.75 22.67 42.34 2.74
433 440 2.439507 CCTATATTCCTGTGTGGCCACT 59.560 50.000 34.75 16.58 42.34 4.00
434 441 2.851195 CCTATATTCCTGTGTGGCCAC 58.149 52.381 29.67 29.67 42.19 5.01
435 442 1.142870 GCCTATATTCCTGTGTGGCCA 59.857 52.381 0.00 0.00 35.26 5.36
436 443 1.142870 TGCCTATATTCCTGTGTGGCC 59.857 52.381 0.00 0.00 38.23 5.36
437 444 2.638480 TGCCTATATTCCTGTGTGGC 57.362 50.000 0.00 0.00 39.33 5.01
438 445 5.132502 TCATTTGCCTATATTCCTGTGTGG 58.867 41.667 0.00 0.00 37.10 4.17
439 446 6.017605 GTCTCATTTGCCTATATTCCTGTGTG 60.018 42.308 0.00 0.00 0.00 3.82
440 447 6.058183 GTCTCATTTGCCTATATTCCTGTGT 58.942 40.000 0.00 0.00 0.00 3.72
441 448 5.178252 CGTCTCATTTGCCTATATTCCTGTG 59.822 44.000 0.00 0.00 0.00 3.66
442 449 5.163301 ACGTCTCATTTGCCTATATTCCTGT 60.163 40.000 0.00 0.00 0.00 4.00
443 450 5.300752 ACGTCTCATTTGCCTATATTCCTG 58.699 41.667 0.00 0.00 0.00 3.86
444 451 5.552870 ACGTCTCATTTGCCTATATTCCT 57.447 39.130 0.00 0.00 0.00 3.36
445 452 6.456501 ACTACGTCTCATTTGCCTATATTCC 58.543 40.000 0.00 0.00 0.00 3.01
446 453 9.077674 CATACTACGTCTCATTTGCCTATATTC 57.922 37.037 0.00 0.00 0.00 1.75
447 454 7.545965 GCATACTACGTCTCATTTGCCTATATT 59.454 37.037 0.00 0.00 0.00 1.28
448 455 7.036220 GCATACTACGTCTCATTTGCCTATAT 58.964 38.462 0.00 0.00 0.00 0.86
449 456 6.387465 GCATACTACGTCTCATTTGCCTATA 58.613 40.000 0.00 0.00 0.00 1.31
450 457 5.230942 GCATACTACGTCTCATTTGCCTAT 58.769 41.667 0.00 0.00 0.00 2.57
451 458 4.617959 GCATACTACGTCTCATTTGCCTA 58.382 43.478 0.00 0.00 0.00 3.93
452 459 3.458189 GCATACTACGTCTCATTTGCCT 58.542 45.455 0.00 0.00 0.00 4.75
453 460 2.218759 CGCATACTACGTCTCATTTGCC 59.781 50.000 0.00 0.00 0.00 4.52
454 461 3.113322 TCGCATACTACGTCTCATTTGC 58.887 45.455 0.00 0.00 0.00 3.68
455 462 4.598062 TCTCGCATACTACGTCTCATTTG 58.402 43.478 0.00 0.00 0.00 2.32
456 463 4.790123 GCTCTCGCATACTACGTCTCATTT 60.790 45.833 0.00 0.00 35.78 2.32
457 464 3.304123 GCTCTCGCATACTACGTCTCATT 60.304 47.826 0.00 0.00 35.78 2.57
458 465 2.224549 GCTCTCGCATACTACGTCTCAT 59.775 50.000 0.00 0.00 35.78 2.90
459 466 1.598132 GCTCTCGCATACTACGTCTCA 59.402 52.381 0.00 0.00 35.78 3.27
460 467 1.868498 AGCTCTCGCATACTACGTCTC 59.132 52.381 0.00 0.00 39.10 3.36
461 468 1.868498 GAGCTCTCGCATACTACGTCT 59.132 52.381 6.43 0.00 39.10 4.18
462 469 1.069771 GGAGCTCTCGCATACTACGTC 60.070 57.143 14.64 0.00 39.10 4.34
463 470 0.945813 GGAGCTCTCGCATACTACGT 59.054 55.000 14.64 0.00 39.10 3.57
464 471 1.231221 AGGAGCTCTCGCATACTACG 58.769 55.000 14.64 0.00 39.10 3.51
465 472 3.365565 GCTAAGGAGCTCTCGCATACTAC 60.366 52.174 14.64 0.00 45.98 2.73
466 473 2.814919 GCTAAGGAGCTCTCGCATACTA 59.185 50.000 14.64 0.00 45.98 1.82
467 474 1.611491 GCTAAGGAGCTCTCGCATACT 59.389 52.381 14.64 0.00 45.98 2.12
468 475 2.058913 GCTAAGGAGCTCTCGCATAC 57.941 55.000 14.64 0.00 45.98 2.39
479 486 3.668447 TCTCACAAGCAAAGCTAAGGAG 58.332 45.455 0.00 0.23 38.25 3.69
480 487 3.769739 TCTCACAAGCAAAGCTAAGGA 57.230 42.857 0.00 0.00 38.25 3.36
481 488 3.365767 GCTTCTCACAAGCAAAGCTAAGG 60.366 47.826 1.40 0.00 42.56 2.69
482 489 3.819537 GCTTCTCACAAGCAAAGCTAAG 58.180 45.455 1.40 0.00 42.56 2.18
483 490 3.904136 GCTTCTCACAAGCAAAGCTAA 57.096 42.857 1.40 0.00 42.56 3.09
486 493 2.789491 AAGCTTCTCACAAGCAAAGC 57.211 45.000 8.94 0.00 45.30 3.51
487 494 4.672413 CGTAAAAGCTTCTCACAAGCAAAG 59.328 41.667 0.00 0.00 45.30 2.77
488 495 4.334203 TCGTAAAAGCTTCTCACAAGCAAA 59.666 37.500 0.00 0.00 45.30 3.68
489 496 3.874543 TCGTAAAAGCTTCTCACAAGCAA 59.125 39.130 0.00 0.00 45.30 3.91
490 497 3.462982 TCGTAAAAGCTTCTCACAAGCA 58.537 40.909 0.00 0.00 45.30 3.91
491 498 4.468095 TTCGTAAAAGCTTCTCACAAGC 57.532 40.909 0.00 0.00 43.31 4.01
557 564 5.923733 AATTGTGTCACACCCACTAAAAA 57.076 34.783 4.80 0.00 32.73 1.94
558 565 5.186021 ACAAATTGTGTCACACCCACTAAAA 59.814 36.000 4.80 0.00 34.38 1.52
559 566 4.707448 ACAAATTGTGTCACACCCACTAAA 59.293 37.500 4.80 0.00 34.38 1.85
560 567 4.274147 ACAAATTGTGTCACACCCACTAA 58.726 39.130 4.80 0.00 34.38 2.24
561 568 3.892284 ACAAATTGTGTCACACCCACTA 58.108 40.909 4.80 0.00 34.38 2.74
562 569 2.733956 ACAAATTGTGTCACACCCACT 58.266 42.857 4.80 0.00 34.38 4.00
572 579 6.866480 AGTTGTGAATTCAGACAAATTGTGT 58.134 32.000 8.80 0.00 45.74 3.72
578 585 9.647797 ACGTATATAGTTGTGAATTCAGACAAA 57.352 29.630 8.80 4.27 33.96 2.83
599 606 9.379791 TCTCGAGATACACAATCATATACGTAT 57.620 33.333 12.08 13.54 37.03 3.06
600 607 8.767478 TCTCGAGATACACAATCATATACGTA 57.233 34.615 12.08 0.00 37.03 3.57
601 608 7.603024 TCTCTCGAGATACACAATCATATACGT 59.397 37.037 17.03 0.00 37.03 3.57
602 609 7.965045 TCTCTCGAGATACACAATCATATACG 58.035 38.462 17.03 0.00 37.03 3.06
605 612 9.018582 TCATTCTCTCGAGATACACAATCATAT 57.981 33.333 17.03 0.00 37.29 1.78
606 613 8.396272 TCATTCTCTCGAGATACACAATCATA 57.604 34.615 17.03 0.00 37.29 2.15
607 614 7.014134 ACTCATTCTCTCGAGATACACAATCAT 59.986 37.037 17.03 0.00 37.29 2.45
608 615 6.319911 ACTCATTCTCTCGAGATACACAATCA 59.680 38.462 17.03 0.00 37.29 2.57
609 616 6.734137 ACTCATTCTCTCGAGATACACAATC 58.266 40.000 17.03 0.00 37.29 2.67
610 617 6.707440 ACTCATTCTCTCGAGATACACAAT 57.293 37.500 17.03 6.72 37.29 2.71
611 618 7.625828 TTACTCATTCTCTCGAGATACACAA 57.374 36.000 17.03 4.63 37.29 3.33
612 619 7.625828 TTTACTCATTCTCTCGAGATACACA 57.374 36.000 17.03 0.00 37.29 3.72
613 620 9.820229 CTATTTACTCATTCTCTCGAGATACAC 57.180 37.037 17.03 0.00 37.29 2.90
614 621 8.508062 GCTATTTACTCATTCTCTCGAGATACA 58.492 37.037 17.03 3.05 37.29 2.29
615 622 8.508062 TGCTATTTACTCATTCTCTCGAGATAC 58.492 37.037 17.03 0.00 37.29 2.24
616 623 8.622948 TGCTATTTACTCATTCTCTCGAGATA 57.377 34.615 17.03 5.90 37.29 1.98
617 624 7.517614 TGCTATTTACTCATTCTCTCGAGAT 57.482 36.000 17.03 1.17 37.29 2.75
618 625 6.944234 TGCTATTTACTCATTCTCTCGAGA 57.056 37.500 15.70 15.70 35.27 4.04
619 626 9.684448 TTTATGCTATTTACTCATTCTCTCGAG 57.316 33.333 5.93 5.93 35.30 4.04
857 887 2.412716 CGACTTAATGAGCGCAAAAGCA 60.413 45.455 11.47 0.00 40.15 3.91
862 902 2.259618 GAGACGACTTAATGAGCGCAA 58.740 47.619 11.47 0.00 0.00 4.85
920 986 2.166829 GGAGAGTGAGAGTGAGAGCAA 58.833 52.381 0.00 0.00 0.00 3.91
981 1076 3.123620 GCGGCAGTGGAGCTTCAG 61.124 66.667 0.00 0.00 34.17 3.02
982 1077 4.704833 GGCGGCAGTGGAGCTTCA 62.705 66.667 3.07 0.00 34.17 3.02
1093 1188 3.191791 GCTCCTAGATTAACCCTAGCTCG 59.808 52.174 0.00 0.00 33.91 5.03
1248 1355 4.441913 CGAAAATCAATTCCCCAATCCAGG 60.442 45.833 0.00 0.00 0.00 4.45
1264 1374 6.758886 ACAGAACCAGACATAGATCGAAAATC 59.241 38.462 0.00 0.00 0.00 2.17
1270 1380 4.979197 GCTTACAGAACCAGACATAGATCG 59.021 45.833 0.00 0.00 0.00 3.69
1290 1402 6.003950 TCAACAAAATCACCTTAGCTAGCTT 58.996 36.000 24.88 7.25 0.00 3.74
1291 1403 5.560724 TCAACAAAATCACCTTAGCTAGCT 58.439 37.500 23.12 23.12 0.00 3.32
1292 1404 5.880054 TCAACAAAATCACCTTAGCTAGC 57.120 39.130 6.62 6.62 0.00 3.42
1293 1405 7.094634 ACACATCAACAAAATCACCTTAGCTAG 60.095 37.037 0.00 0.00 0.00 3.42
1294 1406 6.714810 ACACATCAACAAAATCACCTTAGCTA 59.285 34.615 0.00 0.00 0.00 3.32
1333 1445 2.123208 TCCACGGTGGTGTCAGGA 60.123 61.111 25.53 2.61 42.80 3.86
1370 1482 1.970640 GGTGGGTTCAAAAAGCTCCAT 59.029 47.619 0.00 0.00 33.34 3.41
1380 1492 1.548081 CATCATGCAGGTGGGTTCAA 58.452 50.000 0.00 0.00 0.00 2.69
1509 1621 6.721318 AGTAAATACATGTGTGGGTTCAGAT 58.279 36.000 9.11 0.00 0.00 2.90
1533 1645 5.550290 TCAGAACAGCAACTTGTCATCATA 58.450 37.500 0.00 0.00 0.00 2.15
1535 1647 3.807553 TCAGAACAGCAACTTGTCATCA 58.192 40.909 0.00 0.00 0.00 3.07
1696 1877 7.389053 AGAAACTGAAGGTGATGCTTAAGTAAG 59.611 37.037 4.02 0.00 36.40 2.34
1707 1888 6.672266 TCAGACTAAGAAACTGAAGGTGAT 57.328 37.500 0.00 0.00 37.66 3.06
1776 2003 5.987347 CCTTCACTCTGCATTTGAAAATTGT 59.013 36.000 6.32 0.00 30.30 2.71
1783 2010 3.213206 ACACCTTCACTCTGCATTTGA 57.787 42.857 0.00 0.00 0.00 2.69
1832 2074 0.257039 AGAATTGTAGGCCAGGGCTG 59.743 55.000 26.01 0.00 39.30 4.85
1867 2109 1.995376 GGAACATGTCCCACAACCTT 58.005 50.000 0.00 0.00 41.10 3.50
1884 2126 3.700539 CCTGCCACAATTATGTTCATGGA 59.299 43.478 0.00 0.00 37.82 3.41
1894 2136 4.584638 ATCAACTACCCTGCCACAATTA 57.415 40.909 0.00 0.00 0.00 1.40
2037 2279 2.817839 GCCTTCTGGTAAACCATGTGGT 60.818 50.000 1.51 0.00 46.46 4.16
2046 2288 2.708861 TCCTCAACTGCCTTCTGGTAAA 59.291 45.455 0.00 0.00 35.27 2.01
2048 2290 1.902508 CTCCTCAACTGCCTTCTGGTA 59.097 52.381 0.00 0.00 35.27 3.25
2054 2296 1.349357 GTCTTCCTCCTCAACTGCCTT 59.651 52.381 0.00 0.00 0.00 4.35
2074 2317 5.863965 ACCTCTTTCTTCTTCTTCTCAAGG 58.136 41.667 0.00 0.00 0.00 3.61
2075 2318 7.891561 TCTACCTCTTTCTTCTTCTTCTCAAG 58.108 38.462 0.00 0.00 0.00 3.02
2155 2398 4.695455 GCTTGACTCTGTAAAATGCACCTA 59.305 41.667 0.00 0.00 0.00 3.08
2194 2437 1.180029 CCTTCATTGCCTTCCTGGTG 58.820 55.000 0.00 0.00 38.35 4.17
2208 2451 2.634940 CTCTCCTGTTGAACCTCCTTCA 59.365 50.000 0.00 0.00 37.08 3.02
2219 2462 6.169094 TCTTAAGCAAATCTCTCTCCTGTTG 58.831 40.000 0.00 0.00 0.00 3.33
2245 2488 0.607489 GCTCAAGCTTGGCCTTCTCA 60.607 55.000 25.73 3.34 38.21 3.27
2280 2523 1.353103 GCATGACCATCTTTCCGCG 59.647 57.895 0.00 0.00 0.00 6.46
2283 2526 1.820519 TGCTTGCATGACCATCTTTCC 59.179 47.619 3.33 0.00 0.00 3.13
2286 2529 1.822990 CCTTGCTTGCATGACCATCTT 59.177 47.619 3.33 0.00 0.00 2.40
2287 2530 1.005097 TCCTTGCTTGCATGACCATCT 59.995 47.619 3.33 0.00 0.00 2.90
2293 2536 2.867624 AGTTTCTCCTTGCTTGCATGA 58.132 42.857 3.33 3.29 0.00 3.07
2328 2571 5.563592 ACACACTTCATGAATCAAGGATGA 58.436 37.500 8.96 0.00 40.57 2.92
2359 2602 3.844211 AGGCCTTAGATGTACTTCACCAA 59.156 43.478 0.00 2.07 0.00 3.67
2487 2731 9.760077 TTAGCATTAAAGGTTCTAGTAGCATAC 57.240 33.333 1.27 0.00 43.47 2.39
2536 2780 4.666512 AGGTTCAAATACAGGCAGAACAT 58.333 39.130 0.00 0.00 40.11 2.71
2562 2806 5.876651 TCACTGACTCCATAACATAGCAT 57.123 39.130 0.00 0.00 0.00 3.79
2629 2875 8.848474 AGCACTAATAAACACACTTCAACTAT 57.152 30.769 0.00 0.00 0.00 2.12
2635 2881 7.801783 GGTACAAAGCACTAATAAACACACTTC 59.198 37.037 0.00 0.00 0.00 3.01
2636 2882 7.501225 AGGTACAAAGCACTAATAAACACACTT 59.499 33.333 0.00 0.00 0.00 3.16
2637 2883 6.996282 AGGTACAAAGCACTAATAAACACACT 59.004 34.615 0.00 0.00 0.00 3.55
2638 2884 7.075741 CAGGTACAAAGCACTAATAAACACAC 58.924 38.462 0.00 0.00 0.00 3.82
2639 2885 6.205853 CCAGGTACAAAGCACTAATAAACACA 59.794 38.462 0.00 0.00 0.00 3.72
2640 2886 6.428771 TCCAGGTACAAAGCACTAATAAACAC 59.571 38.462 0.00 0.00 0.00 3.32
2665 2911 2.675658 ACATAACTGGGCCACAAAGT 57.324 45.000 0.00 0.00 0.00 2.66
2683 2929 2.791655 AGTAGGCCTAGGTTTGCAAAC 58.208 47.619 30.09 30.09 38.17 2.93
2687 2933 3.451540 AGAGTTAGTAGGCCTAGGTTTGC 59.548 47.826 14.38 0.00 0.00 3.68
2704 2950 3.030291 CAGTGGAGAGGCATCTAGAGTT 58.970 50.000 0.00 0.00 35.30 3.01
2705 2951 2.665165 CAGTGGAGAGGCATCTAGAGT 58.335 52.381 0.00 0.00 35.30 3.24
2706 2952 1.340889 GCAGTGGAGAGGCATCTAGAG 59.659 57.143 0.00 0.00 35.30 2.43
2707 2953 1.063341 AGCAGTGGAGAGGCATCTAGA 60.063 52.381 0.00 0.00 35.30 2.43
2709 2955 1.342374 TGAGCAGTGGAGAGGCATCTA 60.342 52.381 0.00 0.00 35.30 1.98
2711 2957 0.469070 ATGAGCAGTGGAGAGGCATC 59.531 55.000 0.00 0.00 0.00 3.91
2712 2958 1.798626 TATGAGCAGTGGAGAGGCAT 58.201 50.000 0.00 0.00 0.00 4.40
2713 2959 1.571955 TTATGAGCAGTGGAGAGGCA 58.428 50.000 0.00 0.00 0.00 4.75
2714 2960 2.698855 TTTATGAGCAGTGGAGAGGC 57.301 50.000 0.00 0.00 0.00 4.70
2715 2961 4.314121 GCTATTTATGAGCAGTGGAGAGG 58.686 47.826 0.00 0.00 39.84 3.69
2716 2962 4.040217 AGGCTATTTATGAGCAGTGGAGAG 59.960 45.833 0.00 0.00 41.98 3.20
2717 2963 3.969976 AGGCTATTTATGAGCAGTGGAGA 59.030 43.478 0.00 0.00 41.98 3.71
2740 2986 2.689034 GAGGAGGGTGGGTGGAGG 60.689 72.222 0.00 0.00 0.00 4.30
2760 3006 4.329545 GCGGCTGGGTTCTGGACA 62.330 66.667 0.00 0.00 0.00 4.02
2862 3108 2.747855 GCCCTTTGCCTCCTCACG 60.748 66.667 0.00 0.00 0.00 4.35
2894 3140 1.617322 CTCCCAATCTGATGGCATGG 58.383 55.000 3.81 0.00 39.26 3.66
2895 3141 0.959553 GCTCCCAATCTGATGGCATG 59.040 55.000 3.81 0.00 39.26 4.06
2896 3142 0.851469 AGCTCCCAATCTGATGGCAT 59.149 50.000 0.00 0.00 39.26 4.40
2897 3143 0.106868 CAGCTCCCAATCTGATGGCA 60.107 55.000 0.00 0.00 39.26 4.92
2898 3144 0.822532 CCAGCTCCCAATCTGATGGC 60.823 60.000 0.00 0.00 39.26 4.40
2899 3145 0.841961 TCCAGCTCCCAATCTGATGG 59.158 55.000 0.00 0.00 38.47 3.51
2900 3146 1.489649 ACTCCAGCTCCCAATCTGATG 59.510 52.381 0.00 0.00 32.26 3.07
2901 3147 1.890552 ACTCCAGCTCCCAATCTGAT 58.109 50.000 0.00 0.00 32.26 2.90
2902 3148 1.556911 GAACTCCAGCTCCCAATCTGA 59.443 52.381 0.00 0.00 32.26 3.27
2903 3149 1.280133 TGAACTCCAGCTCCCAATCTG 59.720 52.381 0.00 0.00 0.00 2.90
2904 3150 1.661463 TGAACTCCAGCTCCCAATCT 58.339 50.000 0.00 0.00 0.00 2.40
2905 3151 2.026822 TCTTGAACTCCAGCTCCCAATC 60.027 50.000 0.00 0.00 0.00 2.67
2906 3152 1.988107 TCTTGAACTCCAGCTCCCAAT 59.012 47.619 0.00 0.00 0.00 3.16
2907 3153 1.349026 CTCTTGAACTCCAGCTCCCAA 59.651 52.381 0.00 0.00 0.00 4.12
2962 3208 5.049129 GGACAAGAACTGAGAACTCATTTGG 60.049 44.000 11.10 0.86 39.13 3.28
2965 3211 4.349342 AGGGACAAGAACTGAGAACTCATT 59.651 41.667 4.96 0.00 39.13 2.57
2974 3220 1.371183 CGCCAGGGACAAGAACTGA 59.629 57.895 0.00 0.00 34.21 3.41
3023 3269 3.081554 CTTGTGCCCTAGCCCACT 58.918 61.111 10.93 0.00 38.69 4.00
3034 3280 1.134965 AGGATCGAGTACTGCTTGTGC 60.135 52.381 0.00 0.00 40.20 4.57
3035 3281 2.164422 TGAGGATCGAGTACTGCTTGTG 59.836 50.000 0.00 0.00 38.61 3.33
3039 3285 1.394618 GGTGAGGATCGAGTACTGCT 58.605 55.000 0.00 0.00 38.61 4.24
3050 3296 2.957312 GCTCTGGTAGAAGGGTGAGGAT 60.957 54.545 0.00 0.00 0.00 3.24
3080 3326 2.095768 TCGTAACGATCGAAGAAACGGT 60.096 45.455 24.34 0.00 43.58 4.83
3081 3327 2.508867 TCGTAACGATCGAAGAAACGG 58.491 47.619 24.34 8.33 43.58 4.44
3124 3371 9.323985 GCTCAGACTCTCATTCATACTTAAAAT 57.676 33.333 0.00 0.00 0.00 1.82
3160 3456 7.823745 ACAAAGAGTTGTACAGAAATGGAAT 57.176 32.000 0.00 0.00 46.33 3.01
3227 3542 7.442969 ACACTCATGCAAACATTGATTCATTTT 59.557 29.630 0.00 0.00 32.87 1.82
3248 3563 8.715191 AAGATTGATAGATTCAGACAACACTC 57.285 34.615 0.00 0.00 35.27 3.51
3266 3581 6.436847 TCCCAAAATACTGATGCAAAGATTGA 59.563 34.615 6.76 0.00 0.00 2.57
3267 3582 6.632909 TCCCAAAATACTGATGCAAAGATTG 58.367 36.000 6.76 6.23 0.00 2.67
3269 3584 7.343833 AGAATCCCAAAATACTGATGCAAAGAT 59.656 33.333 6.76 0.00 0.00 2.40
3270 3585 6.664816 AGAATCCCAAAATACTGATGCAAAGA 59.335 34.615 6.76 0.00 0.00 2.52
3271 3586 6.870769 AGAATCCCAAAATACTGATGCAAAG 58.129 36.000 0.00 0.00 0.00 2.77
3275 3590 7.750229 TGATAGAATCCCAAAATACTGATGC 57.250 36.000 0.00 0.00 0.00 3.91
3285 3600 8.727149 AGGTTGATAGATTGATAGAATCCCAAA 58.273 33.333 0.00 0.00 0.00 3.28
3287 3602 7.513781 TGAGGTTGATAGATTGATAGAATCCCA 59.486 37.037 0.00 0.00 0.00 4.37
3288 3603 7.821846 GTGAGGTTGATAGATTGATAGAATCCC 59.178 40.741 0.00 0.00 0.00 3.85
3289 3604 7.821846 GGTGAGGTTGATAGATTGATAGAATCC 59.178 40.741 0.00 0.00 0.00 3.01
3290 3605 8.370940 TGGTGAGGTTGATAGATTGATAGAATC 58.629 37.037 0.00 0.00 0.00 2.52
3291 3606 8.267620 TGGTGAGGTTGATAGATTGATAGAAT 57.732 34.615 0.00 0.00 0.00 2.40
3292 3607 7.675161 TGGTGAGGTTGATAGATTGATAGAA 57.325 36.000 0.00 0.00 0.00 2.10
3293 3608 7.675161 TTGGTGAGGTTGATAGATTGATAGA 57.325 36.000 0.00 0.00 0.00 1.98
3294 3609 6.426328 GCTTGGTGAGGTTGATAGATTGATAG 59.574 42.308 0.00 0.00 0.00 2.08
3295 3610 6.100279 AGCTTGGTGAGGTTGATAGATTGATA 59.900 38.462 0.00 0.00 30.17 2.15
3296 3611 5.104193 AGCTTGGTGAGGTTGATAGATTGAT 60.104 40.000 0.00 0.00 30.17 2.57
3297 3612 4.225942 AGCTTGGTGAGGTTGATAGATTGA 59.774 41.667 0.00 0.00 30.17 2.57
3298 3613 4.334759 CAGCTTGGTGAGGTTGATAGATTG 59.665 45.833 0.00 0.00 32.70 2.67
3300 3615 3.683847 GCAGCTTGGTGAGGTTGATAGAT 60.684 47.826 3.84 0.00 32.70 1.98
3301 3616 2.355108 GCAGCTTGGTGAGGTTGATAGA 60.355 50.000 3.84 0.00 32.70 1.98
3302 3617 2.012673 GCAGCTTGGTGAGGTTGATAG 58.987 52.381 3.84 0.00 32.70 2.08
3303 3618 1.340017 GGCAGCTTGGTGAGGTTGATA 60.340 52.381 3.84 0.00 32.70 2.15
3304 3619 0.610232 GGCAGCTTGGTGAGGTTGAT 60.610 55.000 3.84 0.00 32.70 2.57
3305 3620 1.228245 GGCAGCTTGGTGAGGTTGA 60.228 57.895 3.84 0.00 32.70 3.18
3306 3621 1.108727 TTGGCAGCTTGGTGAGGTTG 61.109 55.000 3.84 0.00 32.70 3.77
3307 3622 0.396974 TTTGGCAGCTTGGTGAGGTT 60.397 50.000 3.84 0.00 32.70 3.50
3308 3623 1.109323 GTTTGGCAGCTTGGTGAGGT 61.109 55.000 3.84 0.00 36.26 3.85
3309 3624 1.662044 GTTTGGCAGCTTGGTGAGG 59.338 57.895 3.84 0.00 0.00 3.86
3310 3625 1.108727 TGGTTTGGCAGCTTGGTGAG 61.109 55.000 3.84 0.00 0.00 3.51
3311 3626 1.076412 TGGTTTGGCAGCTTGGTGA 60.076 52.632 3.84 0.00 0.00 4.02
3312 3627 1.108727 TCTGGTTTGGCAGCTTGGTG 61.109 55.000 0.00 0.00 0.00 4.17
3313 3628 0.396974 TTCTGGTTTGGCAGCTTGGT 60.397 50.000 0.00 0.00 0.00 3.67
3314 3629 0.316204 CTTCTGGTTTGGCAGCTTGG 59.684 55.000 0.00 0.00 0.00 3.61
3315 3630 1.000938 GACTTCTGGTTTGGCAGCTTG 60.001 52.381 0.00 0.00 0.00 4.01
3316 3631 1.322442 GACTTCTGGTTTGGCAGCTT 58.678 50.000 0.00 0.00 0.00 3.74
3317 3632 0.183492 TGACTTCTGGTTTGGCAGCT 59.817 50.000 0.00 0.00 0.00 4.24
3318 3633 0.312102 GTGACTTCTGGTTTGGCAGC 59.688 55.000 0.00 0.00 0.00 5.25
3319 3634 1.679139 TGTGACTTCTGGTTTGGCAG 58.321 50.000 0.00 0.00 0.00 4.85
3320 3635 2.136298 TTGTGACTTCTGGTTTGGCA 57.864 45.000 0.00 0.00 0.00 4.92
3321 3636 2.165437 TGTTTGTGACTTCTGGTTTGGC 59.835 45.455 0.00 0.00 0.00 4.52
3322 3637 3.443681 AGTGTTTGTGACTTCTGGTTTGG 59.556 43.478 0.00 0.00 0.00 3.28
3323 3638 4.701956 AGTGTTTGTGACTTCTGGTTTG 57.298 40.909 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.