Multiple sequence alignment - TraesCS7A01G462900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G462900 chr7A 100.000 4514 0 0 1 4514 659408509 659403996 0.000000e+00 8336.0
1 TraesCS7A01G462900 chr7A 92.453 106 7 1 172 276 25411109 25411004 2.810000e-32 150.0
2 TraesCS7A01G462900 chr7B 91.533 2681 181 24 1159 3815 626114189 626111531 0.000000e+00 3651.0
3 TraesCS7A01G462900 chr7B 82.968 957 84 37 262 1169 626115143 626114217 0.000000e+00 791.0
4 TraesCS7A01G462900 chr7B 84.672 411 44 11 3801 4195 626074539 626074132 4.230000e-105 392.0
5 TraesCS7A01G462900 chr7B 91.016 256 20 3 4261 4514 626073986 626073732 4.320000e-90 342.0
6 TraesCS7A01G462900 chr7D 88.119 2281 183 40 1584 3833 570649444 570647221 0.000000e+00 2630.0
7 TraesCS7A01G462900 chr7D 89.371 875 34 28 275 1146 570650667 570649849 0.000000e+00 1046.0
8 TraesCS7A01G462900 chr7D 90.145 345 21 5 1159 1492 570649804 570649462 1.930000e-118 436.0
9 TraesCS7A01G462900 chr7D 87.500 152 13 2 4048 4195 570645706 570645557 2.160000e-38 171.0
10 TraesCS7A01G462900 chr7D 90.991 111 8 2 172 280 419562439 419562329 1.010000e-31 148.0
11 TraesCS7A01G462900 chr4B 86.486 148 18 2 5 151 527650385 527650531 1.300000e-35 161.0
12 TraesCS7A01G462900 chr1B 86.207 145 19 1 5 148 368416689 368416833 6.050000e-34 156.0
13 TraesCS7A01G462900 chr1B 86.567 134 17 1 19 151 60061184 60061317 3.640000e-31 147.0
14 TraesCS7A01G462900 chr1B 83.893 149 23 1 1 148 31944412 31944560 1.690000e-29 141.0
15 TraesCS7A01G462900 chrUn 91.743 109 8 1 172 279 218481601 218481709 2.810000e-32 150.0
16 TraesCS7A01G462900 chr5A 92.453 106 7 1 172 276 24796236 24796341 2.810000e-32 150.0
17 TraesCS7A01G462900 chr5A 92.453 106 7 1 172 276 505508734 505508839 2.810000e-32 150.0
18 TraesCS7A01G462900 chr5A 88.136 118 13 1 161 277 343457859 343457976 6.090000e-29 139.0
19 TraesCS7A01G462900 chr2A 92.453 106 7 1 172 276 674047067 674046962 2.810000e-32 150.0
20 TraesCS7A01G462900 chr2A 92.453 106 7 1 172 276 763687568 763687463 2.810000e-32 150.0
21 TraesCS7A01G462900 chr3A 91.509 106 8 1 172 276 451675149 451675254 1.310000e-30 145.0
22 TraesCS7A01G462900 chr6B 86.325 117 16 0 32 148 667178912 667179028 1.320000e-25 128.0
23 TraesCS7A01G462900 chr6D 82.906 117 20 0 32 148 76129221 76129105 6.180000e-19 106.0
24 TraesCS7A01G462900 chr3D 79.508 122 24 1 29 149 423834078 423834199 8.050000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G462900 chr7A 659403996 659408509 4513 True 8336.00 8336 100.00000 1 4514 1 chr7A.!!$R2 4513
1 TraesCS7A01G462900 chr7B 626111531 626115143 3612 True 2221.00 3651 87.25050 262 3815 2 chr7B.!!$R2 3553
2 TraesCS7A01G462900 chr7B 626073732 626074539 807 True 367.00 392 87.84400 3801 4514 2 chr7B.!!$R1 713
3 TraesCS7A01G462900 chr7D 570645557 570650667 5110 True 1070.75 2630 88.78375 275 4195 4 chr7D.!!$R2 3920

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.104120 CGGGCAGGACATACATTCGA 59.896 55.0 0.00 0.0 0.0 3.71 F
185 186 0.179176 CTGCGACTCTCTCTGTTCCG 60.179 60.0 0.00 0.0 0.0 4.30 F
1169 1264 0.179124 ATCTCGCGTTCTTCTCTGCC 60.179 55.0 5.77 0.0 0.0 4.85 F
1438 1544 0.324091 CCCTTCTTGCCAGCTTCCAT 60.324 55.0 0.00 0.0 0.0 3.41 F
2120 2228 0.693622 TATCTGTCCCCGGCAACAAA 59.306 50.0 0.00 0.0 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1142 1199 0.817654 AGAACGCGAGATGGACATGA 59.182 50.0 15.93 0.00 0.00 3.07 R
2099 2207 0.251916 TGTTGCCGGGGACAGATAAG 59.748 55.0 2.18 0.00 0.00 1.73 R
2604 2720 0.395311 AGACCCCAAGCATGCTGATG 60.395 55.0 23.48 16.77 0.00 3.07 R
2625 2741 1.301677 GACCAAGAGCAAAGGCCTCG 61.302 60.0 5.23 0.58 42.56 4.63 R
3934 5340 0.308684 TTTGCTGTTCTTGCAGAGCG 59.691 50.0 0.00 0.00 41.71 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.319274 ATGCGGGCAGGACATACA 58.681 55.556 0.00 0.00 0.00 2.29
18 19 1.839191 ATGCGGGCAGGACATACAT 59.161 52.632 0.00 0.00 0.00 2.29
19 20 0.183492 ATGCGGGCAGGACATACATT 59.817 50.000 0.00 0.00 0.00 2.71
20 21 0.463654 TGCGGGCAGGACATACATTC 60.464 55.000 0.00 0.00 0.00 2.67
21 22 1.498865 GCGGGCAGGACATACATTCG 61.499 60.000 0.00 0.00 0.00 3.34
22 23 0.104120 CGGGCAGGACATACATTCGA 59.896 55.000 0.00 0.00 0.00 3.71
23 24 1.472552 CGGGCAGGACATACATTCGAA 60.473 52.381 0.00 0.00 0.00 3.71
24 25 2.806745 CGGGCAGGACATACATTCGAAT 60.807 50.000 4.39 4.39 0.00 3.34
25 26 3.554129 CGGGCAGGACATACATTCGAATA 60.554 47.826 10.97 0.00 0.00 1.75
26 27 3.746492 GGGCAGGACATACATTCGAATAC 59.254 47.826 10.97 0.00 0.00 1.89
27 28 3.428870 GGCAGGACATACATTCGAATACG 59.571 47.826 10.97 1.86 41.26 3.06
28 29 3.428870 GCAGGACATACATTCGAATACGG 59.571 47.826 10.97 1.07 40.21 4.02
29 30 4.794981 GCAGGACATACATTCGAATACGGA 60.795 45.833 10.97 0.00 40.21 4.69
30 31 5.286438 CAGGACATACATTCGAATACGGAA 58.714 41.667 10.97 0.00 40.21 4.30
31 32 5.402568 CAGGACATACATTCGAATACGGAAG 59.597 44.000 10.97 0.00 40.21 3.46
32 33 5.301045 AGGACATACATTCGAATACGGAAGA 59.699 40.000 10.97 0.00 40.21 2.87
33 34 5.629849 GGACATACATTCGAATACGGAAGAG 59.370 44.000 10.97 0.00 40.21 2.85
34 35 5.529791 ACATACATTCGAATACGGAAGAGG 58.470 41.667 10.97 0.00 40.21 3.69
35 36 2.822764 ACATTCGAATACGGAAGAGGC 58.177 47.619 10.97 0.00 40.21 4.70
36 37 2.167693 ACATTCGAATACGGAAGAGGCA 59.832 45.455 10.97 0.00 40.21 4.75
37 38 2.288961 TTCGAATACGGAAGAGGCAC 57.711 50.000 0.00 0.00 40.21 5.01
38 39 0.458669 TCGAATACGGAAGAGGCACC 59.541 55.000 0.00 0.00 40.21 5.01
44 45 3.453559 CGGAAGAGGCACCGTATTT 57.546 52.632 0.00 0.00 43.53 1.40
45 46 1.006832 CGGAAGAGGCACCGTATTTG 58.993 55.000 0.00 0.00 43.53 2.32
46 47 0.733150 GGAAGAGGCACCGTATTTGC 59.267 55.000 0.00 0.00 39.41 3.68
47 48 1.448985 GAAGAGGCACCGTATTTGCA 58.551 50.000 0.00 0.00 42.12 4.08
48 49 1.130561 GAAGAGGCACCGTATTTGCAC 59.869 52.381 0.00 0.00 42.12 4.57
49 50 1.019278 AGAGGCACCGTATTTGCACG 61.019 55.000 0.00 0.00 42.12 5.34
55 56 3.883462 CGTATTTGCACGGCCAGA 58.117 55.556 2.24 0.00 38.26 3.86
56 57 1.423845 CGTATTTGCACGGCCAGAC 59.576 57.895 2.24 0.00 38.26 3.51
57 58 1.295357 CGTATTTGCACGGCCAGACA 61.295 55.000 2.24 0.00 38.26 3.41
58 59 0.878416 GTATTTGCACGGCCAGACAA 59.122 50.000 2.24 0.00 0.00 3.18
59 60 1.135689 GTATTTGCACGGCCAGACAAG 60.136 52.381 2.24 0.00 0.00 3.16
60 61 0.823356 ATTTGCACGGCCAGACAAGT 60.823 50.000 2.24 0.00 0.00 3.16
61 62 1.034838 TTTGCACGGCCAGACAAGTT 61.035 50.000 2.24 0.00 0.00 2.66
62 63 1.444119 TTGCACGGCCAGACAAGTTC 61.444 55.000 2.24 0.00 0.00 3.01
63 64 2.954753 GCACGGCCAGACAAGTTCG 61.955 63.158 2.24 0.00 0.00 3.95
64 65 1.300620 CACGGCCAGACAAGTTCGA 60.301 57.895 2.24 0.00 0.00 3.71
65 66 1.006102 ACGGCCAGACAAGTTCGAG 60.006 57.895 2.24 0.00 0.00 4.04
66 67 2.383527 CGGCCAGACAAGTTCGAGC 61.384 63.158 2.24 0.00 0.00 5.03
67 68 1.301716 GGCCAGACAAGTTCGAGCA 60.302 57.895 0.00 0.00 0.00 4.26
68 69 1.569479 GGCCAGACAAGTTCGAGCAC 61.569 60.000 0.00 0.00 0.00 4.40
69 70 1.569479 GCCAGACAAGTTCGAGCACC 61.569 60.000 1.01 0.00 0.00 5.01
70 71 0.249868 CCAGACAAGTTCGAGCACCA 60.250 55.000 1.01 0.00 0.00 4.17
71 72 1.581934 CAGACAAGTTCGAGCACCAA 58.418 50.000 1.01 0.00 0.00 3.67
72 73 2.146342 CAGACAAGTTCGAGCACCAAT 58.854 47.619 1.01 0.00 0.00 3.16
73 74 2.549754 CAGACAAGTTCGAGCACCAATT 59.450 45.455 1.01 0.00 0.00 2.32
74 75 3.003689 CAGACAAGTTCGAGCACCAATTT 59.996 43.478 1.01 0.00 0.00 1.82
75 76 3.251004 AGACAAGTTCGAGCACCAATTTC 59.749 43.478 1.01 0.00 0.00 2.17
76 77 2.948979 ACAAGTTCGAGCACCAATTTCA 59.051 40.909 1.01 0.00 0.00 2.69
77 78 3.569701 ACAAGTTCGAGCACCAATTTCAT 59.430 39.130 1.01 0.00 0.00 2.57
78 79 4.759693 ACAAGTTCGAGCACCAATTTCATA 59.240 37.500 1.01 0.00 0.00 2.15
79 80 5.415701 ACAAGTTCGAGCACCAATTTCATAT 59.584 36.000 1.01 0.00 0.00 1.78
80 81 6.597672 ACAAGTTCGAGCACCAATTTCATATA 59.402 34.615 1.01 0.00 0.00 0.86
81 82 7.283127 ACAAGTTCGAGCACCAATTTCATATAT 59.717 33.333 1.01 0.00 0.00 0.86
82 83 7.807977 AGTTCGAGCACCAATTTCATATATT 57.192 32.000 1.01 0.00 0.00 1.28
83 84 8.225603 AGTTCGAGCACCAATTTCATATATTT 57.774 30.769 1.01 0.00 0.00 1.40
84 85 8.345565 AGTTCGAGCACCAATTTCATATATTTC 58.654 33.333 1.01 0.00 0.00 2.17
85 86 6.887368 TCGAGCACCAATTTCATATATTTCG 58.113 36.000 0.00 0.00 0.00 3.46
86 87 5.565259 CGAGCACCAATTTCATATATTTCGC 59.435 40.000 0.00 0.00 0.00 4.70
87 88 6.389830 AGCACCAATTTCATATATTTCGCA 57.610 33.333 0.00 0.00 0.00 5.10
88 89 6.804677 AGCACCAATTTCATATATTTCGCAA 58.195 32.000 0.00 0.00 0.00 4.85
89 90 7.436118 AGCACCAATTTCATATATTTCGCAAT 58.564 30.769 0.00 0.00 0.00 3.56
90 91 7.927629 AGCACCAATTTCATATATTTCGCAATT 59.072 29.630 0.00 0.00 0.00 2.32
91 92 8.550376 GCACCAATTTCATATATTTCGCAATTT 58.450 29.630 0.00 0.00 0.00 1.82
97 98 9.979578 ATTTCATATATTTCGCAATTTTAGGCA 57.020 25.926 0.00 0.00 0.00 4.75
98 99 8.795786 TTCATATATTTCGCAATTTTAGGCAC 57.204 30.769 0.00 0.00 0.00 5.01
99 100 7.367285 TCATATATTTCGCAATTTTAGGCACC 58.633 34.615 0.00 0.00 0.00 5.01
100 101 3.951775 ATTTCGCAATTTTAGGCACCA 57.048 38.095 0.00 0.00 0.00 4.17
101 102 3.735237 TTTCGCAATTTTAGGCACCAA 57.265 38.095 0.00 0.00 0.00 3.67
102 103 3.735237 TTCGCAATTTTAGGCACCAAA 57.265 38.095 0.00 0.00 0.00 3.28
103 104 3.019933 TCGCAATTTTAGGCACCAAAC 57.980 42.857 0.00 0.00 0.00 2.93
104 105 2.625790 TCGCAATTTTAGGCACCAAACT 59.374 40.909 0.00 0.00 0.00 2.66
105 106 2.730928 CGCAATTTTAGGCACCAAACTG 59.269 45.455 0.00 0.00 0.00 3.16
106 107 3.551863 CGCAATTTTAGGCACCAAACTGA 60.552 43.478 0.00 0.00 0.00 3.41
107 108 4.568956 GCAATTTTAGGCACCAAACTGAT 58.431 39.130 0.00 0.00 0.00 2.90
108 109 4.627035 GCAATTTTAGGCACCAAACTGATC 59.373 41.667 0.00 0.00 0.00 2.92
109 110 4.701956 ATTTTAGGCACCAAACTGATCG 57.298 40.909 0.00 0.00 0.00 3.69
110 111 2.851263 TTAGGCACCAAACTGATCGT 57.149 45.000 0.00 0.00 0.00 3.73
111 112 2.093306 TAGGCACCAAACTGATCGTG 57.907 50.000 0.00 0.00 0.00 4.35
112 113 4.847255 GCACCAAACTGATCGTGC 57.153 55.556 5.57 5.57 44.17 5.34
115 116 0.518636 CACCAAACTGATCGTGCAGG 59.481 55.000 0.00 0.00 40.20 4.85
116 117 0.396435 ACCAAACTGATCGTGCAGGA 59.604 50.000 12.13 12.13 40.20 3.86
117 118 0.798776 CCAAACTGATCGTGCAGGAC 59.201 55.000 11.97 6.64 40.20 3.85
118 119 1.511850 CAAACTGATCGTGCAGGACA 58.488 50.000 11.97 10.74 40.20 4.02
119 120 1.872952 CAAACTGATCGTGCAGGACAA 59.127 47.619 11.97 1.95 40.20 3.18
120 121 1.800805 AACTGATCGTGCAGGACAAG 58.199 50.000 11.97 13.95 40.20 3.16
121 122 0.681733 ACTGATCGTGCAGGACAAGT 59.318 50.000 11.97 14.58 40.20 3.16
122 123 1.070758 ACTGATCGTGCAGGACAAGTT 59.929 47.619 11.97 0.00 40.20 2.66
123 124 2.146342 CTGATCGTGCAGGACAAGTTT 58.854 47.619 11.97 0.00 32.26 2.66
124 125 3.244078 ACTGATCGTGCAGGACAAGTTTA 60.244 43.478 11.97 0.00 40.20 2.01
125 126 3.325870 TGATCGTGCAGGACAAGTTTAG 58.674 45.455 11.97 0.00 0.00 1.85
126 127 2.163818 TCGTGCAGGACAAGTTTAGG 57.836 50.000 4.68 0.00 0.00 2.69
127 128 0.517316 CGTGCAGGACAAGTTTAGGC 59.483 55.000 0.00 0.00 0.00 3.93
128 129 1.604604 GTGCAGGACAAGTTTAGGCA 58.395 50.000 0.00 0.00 0.00 4.75
129 130 1.537202 GTGCAGGACAAGTTTAGGCAG 59.463 52.381 0.00 0.00 0.00 4.85
130 131 0.523519 GCAGGACAAGTTTAGGCAGC 59.476 55.000 0.00 0.00 0.00 5.25
131 132 1.896220 CAGGACAAGTTTAGGCAGCA 58.104 50.000 0.00 0.00 0.00 4.41
132 133 1.537202 CAGGACAAGTTTAGGCAGCAC 59.463 52.381 0.00 0.00 0.00 4.40
133 134 0.881796 GGACAAGTTTAGGCAGCACC 59.118 55.000 0.00 0.00 39.61 5.01
134 135 1.604604 GACAAGTTTAGGCAGCACCA 58.395 50.000 0.00 0.00 43.14 4.17
135 136 1.537202 GACAAGTTTAGGCAGCACCAG 59.463 52.381 0.00 0.00 43.14 4.00
136 137 1.133792 ACAAGTTTAGGCAGCACCAGT 60.134 47.619 0.00 0.00 43.14 4.00
137 138 1.267806 CAAGTTTAGGCAGCACCAGTG 59.732 52.381 0.00 0.00 43.14 3.66
138 139 0.474184 AGTTTAGGCAGCACCAGTGT 59.526 50.000 0.00 0.00 43.14 3.55
139 140 1.697432 AGTTTAGGCAGCACCAGTGTA 59.303 47.619 0.00 0.00 43.14 2.90
140 141 2.305927 AGTTTAGGCAGCACCAGTGTAT 59.694 45.455 0.00 0.00 43.14 2.29
141 142 3.081804 GTTTAGGCAGCACCAGTGTATT 58.918 45.455 0.00 0.00 43.14 1.89
142 143 3.433306 TTAGGCAGCACCAGTGTATTT 57.567 42.857 0.00 0.00 43.14 1.40
143 144 4.561500 TTAGGCAGCACCAGTGTATTTA 57.438 40.909 0.00 0.00 43.14 1.40
144 145 3.433306 AGGCAGCACCAGTGTATTTAA 57.567 42.857 0.00 0.00 43.14 1.52
145 146 3.081804 AGGCAGCACCAGTGTATTTAAC 58.918 45.455 0.00 0.00 43.14 2.01
146 147 3.081804 GGCAGCACCAGTGTATTTAACT 58.918 45.455 0.00 0.00 38.86 2.24
147 148 3.127030 GGCAGCACCAGTGTATTTAACTC 59.873 47.826 0.00 0.00 38.86 3.01
148 149 4.003648 GCAGCACCAGTGTATTTAACTCT 58.996 43.478 0.00 0.00 32.12 3.24
149 150 4.455877 GCAGCACCAGTGTATTTAACTCTT 59.544 41.667 0.00 0.00 29.46 2.85
150 151 5.048713 GCAGCACCAGTGTATTTAACTCTTT 60.049 40.000 0.00 0.00 29.46 2.52
151 152 6.515035 GCAGCACCAGTGTATTTAACTCTTTT 60.515 38.462 0.00 0.00 29.46 2.27
152 153 7.308348 GCAGCACCAGTGTATTTAACTCTTTTA 60.308 37.037 0.00 0.00 29.46 1.52
153 154 8.230486 CAGCACCAGTGTATTTAACTCTTTTAG 58.770 37.037 0.00 0.00 29.46 1.85
154 155 8.154856 AGCACCAGTGTATTTAACTCTTTTAGA 58.845 33.333 0.00 0.00 29.46 2.10
155 156 8.947115 GCACCAGTGTATTTAACTCTTTTAGAT 58.053 33.333 0.00 0.00 29.46 1.98
170 171 8.607459 ACTCTTTTAGATACATCAATTTCTGCG 58.393 33.333 0.00 0.00 0.00 5.18
171 172 8.716646 TCTTTTAGATACATCAATTTCTGCGA 57.283 30.769 0.00 0.00 0.00 5.10
172 173 8.604035 TCTTTTAGATACATCAATTTCTGCGAC 58.396 33.333 0.00 0.00 0.00 5.19
173 174 8.492673 TTTTAGATACATCAATTTCTGCGACT 57.507 30.769 0.00 0.00 0.00 4.18
174 175 7.700322 TTAGATACATCAATTTCTGCGACTC 57.300 36.000 0.00 0.00 0.00 3.36
175 176 5.911752 AGATACATCAATTTCTGCGACTCT 58.088 37.500 0.00 0.00 0.00 3.24
176 177 5.982516 AGATACATCAATTTCTGCGACTCTC 59.017 40.000 0.00 0.00 0.00 3.20
177 178 4.199432 ACATCAATTTCTGCGACTCTCT 57.801 40.909 0.00 0.00 0.00 3.10
178 179 4.180057 ACATCAATTTCTGCGACTCTCTC 58.820 43.478 0.00 0.00 0.00 3.20
179 180 4.081752 ACATCAATTTCTGCGACTCTCTCT 60.082 41.667 0.00 0.00 0.00 3.10
180 181 3.842820 TCAATTTCTGCGACTCTCTCTG 58.157 45.455 0.00 0.00 0.00 3.35
181 182 3.256879 TCAATTTCTGCGACTCTCTCTGT 59.743 43.478 0.00 0.00 0.00 3.41
182 183 3.951775 ATTTCTGCGACTCTCTCTGTT 57.048 42.857 0.00 0.00 0.00 3.16
183 184 2.999507 TTCTGCGACTCTCTCTGTTC 57.000 50.000 0.00 0.00 0.00 3.18
184 185 1.169577 TCTGCGACTCTCTCTGTTCC 58.830 55.000 0.00 0.00 0.00 3.62
185 186 0.179176 CTGCGACTCTCTCTGTTCCG 60.179 60.000 0.00 0.00 0.00 4.30
186 187 0.605589 TGCGACTCTCTCTGTTCCGA 60.606 55.000 0.00 0.00 0.00 4.55
187 188 0.522180 GCGACTCTCTCTGTTCCGAA 59.478 55.000 0.00 0.00 0.00 4.30
188 189 1.133407 GCGACTCTCTCTGTTCCGAAT 59.867 52.381 0.00 0.00 0.00 3.34
189 190 2.416162 GCGACTCTCTCTGTTCCGAATT 60.416 50.000 0.00 0.00 0.00 2.17
190 191 3.181499 GCGACTCTCTCTGTTCCGAATTA 60.181 47.826 0.00 0.00 0.00 1.40
191 192 4.498345 GCGACTCTCTCTGTTCCGAATTAT 60.498 45.833 0.00 0.00 0.00 1.28
192 193 5.583495 CGACTCTCTCTGTTCCGAATTATT 58.417 41.667 0.00 0.00 0.00 1.40
193 194 5.683743 CGACTCTCTCTGTTCCGAATTATTC 59.316 44.000 0.00 0.00 0.00 1.75
194 195 6.531503 ACTCTCTCTGTTCCGAATTATTCA 57.468 37.500 5.76 0.00 0.00 2.57
195 196 7.118496 ACTCTCTCTGTTCCGAATTATTCAT 57.882 36.000 5.76 0.00 0.00 2.57
196 197 7.206687 ACTCTCTCTGTTCCGAATTATTCATC 58.793 38.462 5.76 0.00 0.00 2.92
197 198 6.209361 TCTCTCTGTTCCGAATTATTCATCG 58.791 40.000 5.76 0.00 38.74 3.84
198 199 4.745125 TCTCTGTTCCGAATTATTCATCGC 59.255 41.667 5.76 0.00 37.73 4.58
199 200 4.438148 TCTGTTCCGAATTATTCATCGCA 58.562 39.130 5.76 0.00 37.73 5.10
200 201 4.507756 TCTGTTCCGAATTATTCATCGCAG 59.492 41.667 5.76 7.70 37.73 5.18
201 202 4.438148 TGTTCCGAATTATTCATCGCAGA 58.562 39.130 5.76 0.00 45.75 4.26
202 203 4.873259 TGTTCCGAATTATTCATCGCAGAA 59.127 37.500 5.76 0.00 43.58 3.02
203 204 5.352846 TGTTCCGAATTATTCATCGCAGAAA 59.647 36.000 5.76 0.00 43.58 2.52
204 205 6.038161 TGTTCCGAATTATTCATCGCAGAAAT 59.962 34.615 5.76 0.00 43.58 2.17
205 206 6.618287 TCCGAATTATTCATCGCAGAAATT 57.382 33.333 5.76 0.00 43.58 1.82
206 207 6.429624 TCCGAATTATTCATCGCAGAAATTG 58.570 36.000 5.76 0.00 43.58 2.32
207 208 6.259829 TCCGAATTATTCATCGCAGAAATTGA 59.740 34.615 5.76 0.00 43.58 2.57
208 209 7.041167 TCCGAATTATTCATCGCAGAAATTGAT 60.041 33.333 5.76 0.00 43.58 2.57
209 210 7.060289 CCGAATTATTCATCGCAGAAATTGATG 59.940 37.037 5.76 0.00 43.58 3.07
210 211 7.588854 CGAATTATTCATCGCAGAAATTGATGT 59.411 33.333 5.76 0.00 43.58 3.06
211 212 9.882996 GAATTATTCATCGCAGAAATTGATGTA 57.117 29.630 0.00 0.00 43.58 2.29
216 217 8.661352 TTCATCGCAGAAATTGATGTATTAGA 57.339 30.769 1.85 0.00 43.58 2.10
217 218 8.837788 TCATCGCAGAAATTGATGTATTAGAT 57.162 30.769 1.85 0.00 43.58 1.98
218 219 8.715088 TCATCGCAGAAATTGATGTATTAGATG 58.285 33.333 1.85 0.00 43.58 2.90
219 220 8.501580 CATCGCAGAAATTGATGTATTAGATGT 58.498 33.333 0.00 0.00 43.58 3.06
220 221 9.710900 ATCGCAGAAATTGATGTATTAGATGTA 57.289 29.630 0.00 0.00 43.58 2.29
221 222 9.710900 TCGCAGAAATTGATGTATTAGATGTAT 57.289 29.630 0.00 0.00 0.00 2.29
251 252 9.593134 AATTCTAGATATATCCATTTCTGCGAC 57.407 33.333 9.18 0.00 0.00 5.19
252 253 6.786207 TCTAGATATATCCATTTCTGCGACG 58.214 40.000 9.18 0.00 0.00 5.12
253 254 5.644977 AGATATATCCATTTCTGCGACGA 57.355 39.130 9.18 0.00 0.00 4.20
254 255 5.645624 AGATATATCCATTTCTGCGACGAG 58.354 41.667 9.18 0.00 0.00 4.18
255 256 3.735237 ATATCCATTTCTGCGACGAGT 57.265 42.857 0.00 0.00 0.00 4.18
256 257 4.848562 ATATCCATTTCTGCGACGAGTA 57.151 40.909 0.00 0.00 0.00 2.59
257 258 3.520290 ATCCATTTCTGCGACGAGTAA 57.480 42.857 0.00 0.00 0.00 2.24
258 259 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
259 260 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
260 261 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
261 262 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
262 263 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
263 264 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
264 265 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
265 266 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
266 267 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
267 268 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
268 269 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
269 270 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
270 271 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
271 272 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
272 273 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
273 274 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
291 292 6.351456 GGAGGGAGTATATCAGACAAATAGGC 60.351 46.154 0.00 0.00 0.00 3.93
369 371 4.035612 TCGGGGTCCAAATAATTTGACA 57.964 40.909 5.82 0.00 43.26 3.58
404 407 3.930229 GGTTTTAGCGCTAAAATTTGGGG 59.070 43.478 41.75 1.91 44.01 4.96
413 416 5.293560 CGCTAAAATTTGGGGACTTTGAAA 58.706 37.500 0.00 0.00 0.00 2.69
495 514 5.063817 CACAGACATGCACGAATAAATCAGA 59.936 40.000 0.00 0.00 0.00 3.27
503 522 7.565450 TGCACGAATAAATCAGATTGTTTTG 57.435 32.000 0.00 0.93 0.00 2.44
505 524 7.651304 TGCACGAATAAATCAGATTGTTTTGTT 59.349 29.630 0.00 0.00 0.00 2.83
542 562 1.414181 ACTGTTCGCCTGCATAGCTAT 59.586 47.619 0.00 0.00 0.00 2.97
752 794 1.811679 GCTCCCGCTTCTTCTTCCG 60.812 63.158 0.00 0.00 0.00 4.30
760 802 2.694213 GCTTCTTCTTCCGCTTCTTCT 58.306 47.619 0.00 0.00 0.00 2.85
761 803 3.070748 GCTTCTTCTTCCGCTTCTTCTT 58.929 45.455 0.00 0.00 0.00 2.52
762 804 3.124466 GCTTCTTCTTCCGCTTCTTCTTC 59.876 47.826 0.00 0.00 0.00 2.87
763 805 3.320673 TCTTCTTCCGCTTCTTCTTCC 57.679 47.619 0.00 0.00 0.00 3.46
764 806 1.996191 CTTCTTCCGCTTCTTCTTCCG 59.004 52.381 0.00 0.00 0.00 4.30
765 807 0.389948 TCTTCCGCTTCTTCTTCCGC 60.390 55.000 0.00 0.00 0.00 5.54
770 812 1.746991 GCTTCTTCTTCCGCCCCAG 60.747 63.158 0.00 0.00 0.00 4.45
781 823 2.125106 GCCCCAGTCGCGAGATTT 60.125 61.111 10.24 0.00 45.19 2.17
794 836 1.276421 CGAGATTTGGTGAGTGACCCT 59.724 52.381 0.00 0.00 45.45 4.34
849 891 1.067706 CAGGCTGACAGAGTGAGTGAG 60.068 57.143 9.42 0.00 0.00 3.51
930 980 3.449018 ACTGATGTTATCCGCTCTCTGTT 59.551 43.478 0.00 0.00 0.00 3.16
931 981 4.081420 ACTGATGTTATCCGCTCTCTGTTT 60.081 41.667 0.00 0.00 0.00 2.83
932 982 4.433615 TGATGTTATCCGCTCTCTGTTTC 58.566 43.478 0.00 0.00 0.00 2.78
933 983 3.247006 TGTTATCCGCTCTCTGTTTCC 57.753 47.619 0.00 0.00 0.00 3.13
952 1002 0.320247 CTTCCTGCAGCGAACAGTCT 60.320 55.000 8.66 0.00 33.09 3.24
976 1033 1.227380 CAGCGCTCCACTGATACCC 60.227 63.158 7.13 0.00 37.32 3.69
980 1037 1.244816 CGCTCCACTGATACCCGATA 58.755 55.000 0.00 0.00 0.00 2.92
981 1038 1.200252 CGCTCCACTGATACCCGATAG 59.800 57.143 0.00 0.00 0.00 2.08
982 1039 1.067495 GCTCCACTGATACCCGATAGC 60.067 57.143 0.00 0.00 0.00 2.97
987 1044 2.820059 CTGATACCCGATAGCAGCAA 57.180 50.000 0.00 0.00 40.29 3.91
992 1049 1.450134 CCCGATAGCAGCAACAGCA 60.450 57.895 0.00 0.00 0.00 4.41
996 1053 0.806868 GATAGCAGCAACAGCAAGCA 59.193 50.000 0.00 0.00 35.06 3.91
1005 1062 2.125673 CAGCAAGCAAGCATGGGC 60.126 61.111 3.19 0.00 41.61 5.36
1023 1080 1.221840 CGGTGTTGGATGGAGGAGG 59.778 63.158 0.00 0.00 0.00 4.30
1146 1203 8.517062 AGGTTTCTTTCCTCTTATGATTCATG 57.483 34.615 9.46 0.00 0.00 3.07
1148 1205 8.401709 GGTTTCTTTCCTCTTATGATTCATGTC 58.598 37.037 9.46 0.00 0.00 3.06
1161 1256 0.817654 TCATGTCCATCTCGCGTTCT 59.182 50.000 5.77 0.00 0.00 3.01
1169 1264 0.179124 ATCTCGCGTTCTTCTCTGCC 60.179 55.000 5.77 0.00 0.00 4.85
1181 1276 0.826715 TCTCTGCCTGTATCACCTGC 59.173 55.000 0.00 0.00 0.00 4.85
1215 1310 6.649141 TCGAGCAGAGCTTAGTTGAAATAAAA 59.351 34.615 0.00 0.00 39.88 1.52
1216 1311 7.334421 TCGAGCAGAGCTTAGTTGAAATAAAAT 59.666 33.333 0.00 0.00 39.88 1.82
1233 1328 9.958234 GAAATAAAATAAGATTGGAAGGAGCTC 57.042 33.333 4.71 4.71 0.00 4.09
1244 1339 2.287769 GAAGGAGCTCTGATCTTTGGC 58.712 52.381 14.64 0.00 0.00 4.52
1273 1375 3.378512 TCCTTCTGATAGGCACAGACAT 58.621 45.455 8.17 0.00 42.84 3.06
1275 1377 4.225942 TCCTTCTGATAGGCACAGACATTT 59.774 41.667 8.17 0.00 42.84 2.32
1278 1380 6.037610 CCTTCTGATAGGCACAGACATTTTAC 59.962 42.308 8.17 0.00 42.84 2.01
1283 1385 6.658816 TGATAGGCACAGACATTTTACATTGT 59.341 34.615 0.00 0.00 0.00 2.71
1288 1390 5.405269 GCACAGACATTTTACATTGTTTCCC 59.595 40.000 0.00 0.00 0.00 3.97
1312 1414 7.416664 CCCTTGTTTATGATTATGAGGTGTTGG 60.417 40.741 0.00 0.00 0.00 3.77
1358 1460 3.451894 GGCTTGGGAACATGGGCG 61.452 66.667 0.00 0.00 42.32 6.13
1438 1544 0.324091 CCCTTCTTGCCAGCTTCCAT 60.324 55.000 0.00 0.00 0.00 3.41
1465 1572 3.235750 TGTGGTCCAATGTTCATCCAA 57.764 42.857 0.00 0.00 0.00 3.53
1473 1580 6.324770 GGTCCAATGTTCATCCAATTATTCCT 59.675 38.462 0.00 0.00 0.00 3.36
1483 1590 9.709495 TTCATCCAATTATTCCTTGTTCAAAAG 57.291 29.630 0.00 0.00 0.00 2.27
1492 1599 2.935849 CCTTGTTCAAAAGTGGTTTGCC 59.064 45.455 0.00 0.00 45.38 4.52
1494 1601 3.244033 TGTTCAAAAGTGGTTTGCCTG 57.756 42.857 0.00 0.00 45.38 4.85
1515 1622 8.134895 TGCCTGCTAATTATACATGTAAAAAGC 58.865 33.333 10.14 14.05 0.00 3.51
1517 1624 7.803189 CCTGCTAATTATACATGTAAAAAGCCG 59.197 37.037 10.14 10.46 30.46 5.52
1520 1627 7.807907 GCTAATTATACATGTAAAAAGCCGCAT 59.192 33.333 10.14 0.00 0.00 4.73
1523 1630 9.458374 AATTATACATGTAAAAAGCCGCATTAC 57.542 29.630 10.14 0.29 0.00 1.89
1525 1632 3.119280 ACATGTAAAAAGCCGCATTACCC 60.119 43.478 0.00 0.00 0.00 3.69
1528 1635 3.690628 TGTAAAAAGCCGCATTACCCTAC 59.309 43.478 9.75 0.00 0.00 3.18
1532 1639 0.753262 AGCCGCATTACCCTACTCTG 59.247 55.000 0.00 0.00 0.00 3.35
1538 1645 2.165845 GCATTACCCTACTCTGACACGT 59.834 50.000 0.00 0.00 0.00 4.49
1543 1650 3.494332 ACCCTACTCTGACACGTAGTTT 58.506 45.455 0.00 0.00 41.61 2.66
1550 1657 3.450578 TCTGACACGTAGTTTTGTGGTC 58.549 45.455 0.00 0.00 41.61 4.02
1553 1660 2.195922 ACACGTAGTTTTGTGGTCGTC 58.804 47.619 0.00 0.00 41.61 4.20
1559 1666 5.580297 ACGTAGTTTTGTGGTCGTCTTAAAA 59.420 36.000 0.00 0.00 37.78 1.52
1560 1667 5.898061 CGTAGTTTTGTGGTCGTCTTAAAAC 59.102 40.000 0.00 0.00 39.97 2.43
1596 1703 6.151648 ACCATCCAACAAACACTGAATCTATG 59.848 38.462 0.00 0.00 0.00 2.23
1613 1720 8.270030 TGAATCTATGATGTTCAGAAATGAGGT 58.730 33.333 0.00 0.00 0.00 3.85
1683 1790 2.952978 ACTTGAAGTGTCTGAGTCGAGT 59.047 45.455 0.00 0.00 31.20 4.18
1689 1796 2.887783 AGTGTCTGAGTCGAGTGATGTT 59.112 45.455 0.00 0.00 0.00 2.71
1716 1823 1.282157 ACCATGTTACCTTCCTCTGCC 59.718 52.381 0.00 0.00 0.00 4.85
1757 1864 5.978934 TTTCTTTACGAGAAGTTGGTGAC 57.021 39.130 0.00 0.00 44.80 3.67
1790 1897 7.544622 CACTAGCTGTAACTTGAGTTATACCA 58.455 38.462 6.85 0.96 41.85 3.25
1794 1901 7.221450 AGCTGTAACTTGAGTTATACCAAACA 58.779 34.615 6.85 1.17 41.85 2.83
1797 1904 7.511268 TGTAACTTGAGTTATACCAAACACCT 58.489 34.615 6.85 0.00 41.85 4.00
1824 1931 5.105756 ACCAAATCAAATGCTTAGTGCTACC 60.106 40.000 0.00 0.00 43.37 3.18
1859 1966 6.546403 TCAGGTCTTAGATGTATACAGTGGAC 59.454 42.308 11.91 13.09 0.00 4.02
1918 2025 6.698380 ACCGTGGTTATACATAGATTCATCC 58.302 40.000 0.00 0.00 0.00 3.51
1933 2040 4.849813 TTCATCCACAGTTGATCCTCAT 57.150 40.909 0.00 0.00 0.00 2.90
1939 2046 4.053983 CCACAGTTGATCCTCATACATCG 58.946 47.826 0.00 0.00 0.00 3.84
1981 2088 7.310664 ACATGTCAAGATGCAGTTTAAATGAG 58.689 34.615 0.00 0.00 0.00 2.90
2035 2143 5.783111 ACCACCATTTGAAATTAGCAGTTC 58.217 37.500 0.00 0.00 0.00 3.01
2084 2192 5.119931 TGGAAAAGATGAAACCATCAACG 57.880 39.130 7.97 0.00 42.54 4.10
2090 2198 5.160607 AGATGAAACCATCAACGGTCTTA 57.839 39.130 7.97 0.00 42.54 2.10
2096 2204 3.399330 ACCATCAACGGTCTTAACTGTG 58.601 45.455 0.00 0.00 44.41 3.66
2098 2206 3.432252 CCATCAACGGTCTTAACTGTGTC 59.568 47.826 0.00 0.00 44.41 3.67
2099 2207 3.102052 TCAACGGTCTTAACTGTGTCC 57.898 47.619 0.00 0.00 44.41 4.02
2120 2228 0.693622 TATCTGTCCCCGGCAACAAA 59.306 50.000 0.00 0.00 0.00 2.83
2124 2232 1.201414 CTGTCCCCGGCAACAAATAAC 59.799 52.381 0.00 0.00 0.00 1.89
2148 2264 6.183360 ACACTATCTGCACATTTGAGTTATGC 60.183 38.462 0.00 0.00 36.81 3.14
2153 2269 4.735985 TGCACATTTGAGTTATGCATGTC 58.264 39.130 10.16 4.02 41.18 3.06
2197 2313 0.724549 CGCCGAAAAACCGATGATGA 59.275 50.000 0.00 0.00 0.00 2.92
2273 2389 4.046286 TCATGGTACCATTCCTTGCTTT 57.954 40.909 25.25 0.00 33.90 3.51
2291 2407 6.633500 TGCTTTGCAGAACTTATTGTTACT 57.367 33.333 0.00 0.00 34.29 2.24
2330 2446 5.359860 AGACTTTGTTGGGGAAAAACTAGTG 59.640 40.000 0.00 0.00 0.00 2.74
2509 2625 2.008242 ACTCCAGCTCTTCACTGAGT 57.992 50.000 0.00 0.00 37.32 3.41
2510 2626 2.324541 ACTCCAGCTCTTCACTGAGTT 58.675 47.619 0.00 0.00 37.32 3.01
2511 2627 2.298729 ACTCCAGCTCTTCACTGAGTTC 59.701 50.000 0.00 0.00 37.32 3.01
2545 2661 6.335471 ACTTTTCATGCACAGATGATTCAA 57.665 33.333 0.00 0.00 32.35 2.69
2556 2672 7.013178 TGCACAGATGATTCAAACTCACTTTTA 59.987 33.333 0.00 0.00 0.00 1.52
2581 2697 4.237349 TGTACTTTTAAGGCTGCAAAGC 57.763 40.909 15.30 0.00 31.74 3.51
2619 2735 2.792947 GGCCATCAGCATGCTTGGG 61.793 63.158 30.61 25.31 46.50 4.12
2625 2741 1.751927 CAGCATGCTTGGGGTCTCC 60.752 63.158 19.98 0.00 0.00 3.71
2703 2819 2.897350 AATTGCTCTAGCGCCCGC 60.897 61.111 2.29 4.20 45.83 6.13
2735 2851 6.778559 AGTAGGTATTGTCTCCTCACTTATCC 59.221 42.308 0.00 0.00 35.51 2.59
2758 2874 5.065218 CCTATTGTGGTTTGAGATGCAGTAC 59.935 44.000 0.00 0.00 0.00 2.73
2835 2952 9.733556 TTATTCAGGTGTAAATGTGTAATGAGT 57.266 29.630 0.00 0.00 0.00 3.41
3059 3178 8.137437 CACCTCCAAATTAATGGTATGATTCAC 58.863 37.037 0.00 0.00 41.46 3.18
3065 3186 3.924114 AATGGTATGATTCACGGGACA 57.076 42.857 0.00 0.00 0.00 4.02
3068 3189 2.093711 TGGTATGATTCACGGGACACAG 60.094 50.000 0.00 0.00 0.00 3.66
3117 3245 6.926272 GTGGATTGCTTGGTAAAACAACATTA 59.074 34.615 0.00 0.00 0.00 1.90
3123 3251 6.149633 GCTTGGTAAAACAACATTAGTCTGG 58.850 40.000 0.00 0.00 0.00 3.86
3184 3312 4.071875 CTTAGCAAAGGAAGAGCGAAAC 57.928 45.455 0.00 0.00 0.00 2.78
3186 3314 1.876156 AGCAAAGGAAGAGCGAAACAG 59.124 47.619 0.00 0.00 0.00 3.16
3197 3325 6.346678 GGAAGAGCGAAACAGTGTAAACTAAG 60.347 42.308 0.00 0.00 0.00 2.18
3202 3330 5.560183 GCGAAACAGTGTAAACTAAGTGCAT 60.560 40.000 0.00 0.00 0.00 3.96
3244 3372 1.264020 GCTCACACTTCATCGTTTGCA 59.736 47.619 0.00 0.00 0.00 4.08
3389 3528 8.410912 GTTACAGAAAACCTTACATTTCACCTT 58.589 33.333 0.00 0.00 37.87 3.50
3398 3537 7.847096 ACCTTACATTTCACCTTTTCTTTTGT 58.153 30.769 0.00 0.00 0.00 2.83
3481 3620 0.179215 GGACTTCTCATGCGCGTTTG 60.179 55.000 8.43 5.99 0.00 2.93
3521 3660 5.454471 GCAAGGATGAGAAGTGATCCTGTAT 60.454 44.000 0.00 0.00 46.56 2.29
3542 3681 4.574674 TCTATCCCAGCAAACTTGTCAT 57.425 40.909 0.00 0.00 0.00 3.06
3543 3682 4.922206 TCTATCCCAGCAAACTTGTCATT 58.078 39.130 0.00 0.00 0.00 2.57
3618 3757 1.529244 AGTGCCCAGACAAGGTTGC 60.529 57.895 0.00 0.00 0.00 4.17
3619 3758 1.827789 GTGCCCAGACAAGGTTGCA 60.828 57.895 0.00 0.00 0.00 4.08
3620 3759 1.529010 TGCCCAGACAAGGTTGCAG 60.529 57.895 0.00 0.00 0.00 4.41
3621 3760 1.228245 GCCCAGACAAGGTTGCAGA 60.228 57.895 0.00 0.00 0.00 4.26
3622 3761 1.518903 GCCCAGACAAGGTTGCAGAC 61.519 60.000 0.00 0.00 0.00 3.51
3623 3762 0.109342 CCCAGACAAGGTTGCAGACT 59.891 55.000 0.00 0.00 0.00 3.24
3624 3763 1.477558 CCCAGACAAGGTTGCAGACTT 60.478 52.381 0.00 0.00 0.00 3.01
3666 3805 3.799366 TGTTAGTTCGGTTTGCTTCTCA 58.201 40.909 0.00 0.00 0.00 3.27
3691 3830 7.440255 CAGCAATCAAGTTTCCAGATTTTCTTT 59.560 33.333 0.00 0.00 30.04 2.52
3742 3881 8.209584 ACTGATCTGCATCTCTTTGTACATAAT 58.790 33.333 0.00 0.00 0.00 1.28
3743 3882 8.374327 TGATCTGCATCTCTTTGTACATAATG 57.626 34.615 0.00 0.00 0.00 1.90
3744 3883 8.206189 TGATCTGCATCTCTTTGTACATAATGA 58.794 33.333 0.00 0.00 0.00 2.57
3781 3921 6.530120 TGCTTGGACTCTGTTCATAAAGTTA 58.470 36.000 0.00 0.00 0.00 2.24
3794 3934 8.994500 TGTTCATAAAGTTAGTCCATATACCCA 58.006 33.333 0.00 0.00 0.00 4.51
3799 3939 5.228945 AGTTAGTCCATATACCCATGCAC 57.771 43.478 0.00 0.00 0.00 4.57
3809 3949 0.251922 ACCCATGCACAAGGCTGAAT 60.252 50.000 0.00 0.00 45.15 2.57
3815 3955 3.302365 TGCACAAGGCTGAATTAAAGC 57.698 42.857 4.37 4.37 45.15 3.51
3819 3959 2.749621 ACAAGGCTGAATTAAAGCGGAG 59.250 45.455 6.54 2.40 41.78 4.63
3840 5245 6.259387 CGGAGCTTTAATTTAGGTACCGATTT 59.741 38.462 6.18 5.16 36.67 2.17
3845 5250 8.856247 GCTTTAATTTAGGTACCGATTTTGTTG 58.144 33.333 6.18 0.00 0.00 3.33
3852 5257 3.437741 GGTACCGATTTTGTTGTACCCTG 59.562 47.826 0.00 0.00 44.78 4.45
3853 5258 3.495434 ACCGATTTTGTTGTACCCTGA 57.505 42.857 0.00 0.00 0.00 3.86
3864 5269 5.441500 TGTTGTACCCTGAATTTTCTCACA 58.558 37.500 0.00 0.00 0.00 3.58
3869 5274 5.774498 ACCCTGAATTTTCTCACAACTTC 57.226 39.130 0.00 0.00 0.00 3.01
3873 5278 6.476706 CCCTGAATTTTCTCACAACTTCAAAC 59.523 38.462 0.00 0.00 0.00 2.93
3934 5340 3.460857 AAACGGATCTCAGGCTCATAC 57.539 47.619 0.00 0.00 0.00 2.39
3948 5354 2.610433 CTCATACGCTCTGCAAGAACA 58.390 47.619 0.00 0.00 46.34 3.18
3955 5361 2.606308 CGCTCTGCAAGAACAGCAAAAT 60.606 45.455 0.00 0.00 46.34 1.82
3956 5362 3.365264 CGCTCTGCAAGAACAGCAAAATA 60.365 43.478 0.00 0.00 46.34 1.40
3957 5363 4.549458 GCTCTGCAAGAACAGCAAAATAA 58.451 39.130 0.00 0.00 46.34 1.40
4022 5432 4.695217 AGACAACAAACATGTTCGTGTT 57.305 36.364 18.62 18.62 43.78 3.32
4043 5455 4.461992 TTTCTACTACTTGCGTGCAAAC 57.538 40.909 8.80 0.00 35.33 2.93
4089 5573 7.170828 GTGTGGTGATCTTGGAAAAATTTAACC 59.829 37.037 0.00 0.00 0.00 2.85
4135 5619 5.624738 CGCTTTACATGTCTTTCTCCCTACT 60.625 44.000 0.00 0.00 0.00 2.57
4140 5624 2.621070 TGTCTTTCTCCCTACTGCCTT 58.379 47.619 0.00 0.00 0.00 4.35
4176 5670 3.452786 CTTCCTCTCGGCTCGCCA 61.453 66.667 8.87 0.00 35.37 5.69
4199 5759 2.173356 CCCTTGAGCATCCTGGATTGTA 59.827 50.000 6.42 0.00 0.00 2.41
4205 5765 1.871080 CATCCTGGATTGTAGGACGC 58.129 55.000 6.42 0.00 46.48 5.19
4212 5772 2.973180 GATTGTAGGACGCGGCTCCC 62.973 65.000 13.91 6.44 0.00 4.30
4222 5782 3.790437 CGGCTCCCCTGACATGCT 61.790 66.667 0.00 0.00 0.00 3.79
4223 5783 2.124403 GGCTCCCCTGACATGCTG 60.124 66.667 0.00 0.00 0.00 4.41
4234 5794 1.089920 GACATGCTGTTAGCCCACTG 58.910 55.000 0.00 0.00 41.51 3.66
4239 5799 1.089920 GCTGTTAGCCCACTGACATG 58.910 55.000 0.00 0.00 41.15 3.21
4259 5819 4.265056 GACCCAGCCCCACACGTT 62.265 66.667 0.00 0.00 0.00 3.99
4276 5850 2.744202 ACGTTAGGGTGTAGTACGTCAG 59.256 50.000 0.00 0.00 41.04 3.51
4310 5884 3.131709 AGATTGTGACCCAGACACTTG 57.868 47.619 0.00 0.00 38.81 3.16
4320 5894 1.534595 CCAGACACTTGCTTTGCACAC 60.535 52.381 0.00 0.00 38.71 3.82
4321 5895 1.402968 CAGACACTTGCTTTGCACACT 59.597 47.619 0.00 0.00 38.71 3.55
4322 5896 1.672881 AGACACTTGCTTTGCACACTC 59.327 47.619 0.00 0.00 38.71 3.51
4323 5897 0.378257 ACACTTGCTTTGCACACTCG 59.622 50.000 0.00 0.00 38.71 4.18
4330 5904 0.868406 CTTTGCACACTCGGAAGGAC 59.132 55.000 0.00 0.00 0.00 3.85
4335 5909 1.901948 ACACTCGGAAGGACTCGCA 60.902 57.895 0.00 0.00 0.00 5.10
4355 5929 1.148310 TAGCGTTCAAGTGAAGCTGC 58.852 50.000 19.47 13.10 38.25 5.25
4389 5963 4.215613 GTCTTCCAACCTTGTTGACCATAC 59.784 45.833 8.47 0.00 0.00 2.39
4399 5973 4.041740 TGTTGACCATACGAGCATCTAC 57.958 45.455 0.00 0.00 0.00 2.59
4404 5978 6.013842 TGACCATACGAGCATCTACTAATG 57.986 41.667 0.00 0.00 0.00 1.90
4474 6049 1.191489 TGGGCATCCTCGTCAGACAA 61.191 55.000 0.41 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.183492 AATGTATGTCCTGCCCGCAT 59.817 50.000 0.00 0.00 0.00 4.73
1 2 0.463654 GAATGTATGTCCTGCCCGCA 60.464 55.000 0.00 0.00 0.00 5.69
2 3 1.498865 CGAATGTATGTCCTGCCCGC 61.499 60.000 0.00 0.00 0.00 6.13
3 4 0.104120 TCGAATGTATGTCCTGCCCG 59.896 55.000 0.00 0.00 0.00 6.13
6 7 3.428870 CCGTATTCGAATGTATGTCCTGC 59.571 47.826 20.87 0.00 39.71 4.85
7 8 4.866921 TCCGTATTCGAATGTATGTCCTG 58.133 43.478 20.87 0.22 39.71 3.86
8 9 5.301045 TCTTCCGTATTCGAATGTATGTCCT 59.699 40.000 20.87 0.00 39.71 3.85
9 10 5.526115 TCTTCCGTATTCGAATGTATGTCC 58.474 41.667 20.87 0.00 39.71 4.02
11 12 5.529791 CCTCTTCCGTATTCGAATGTATGT 58.470 41.667 20.87 0.00 39.71 2.29
12 13 4.386049 GCCTCTTCCGTATTCGAATGTATG 59.614 45.833 20.87 7.01 39.71 2.39
13 14 4.038763 TGCCTCTTCCGTATTCGAATGTAT 59.961 41.667 20.87 0.00 39.71 2.29
14 15 3.382227 TGCCTCTTCCGTATTCGAATGTA 59.618 43.478 20.87 0.00 39.71 2.29
15 16 2.167693 TGCCTCTTCCGTATTCGAATGT 59.832 45.455 20.87 0.00 39.71 2.71
16 17 2.540101 GTGCCTCTTCCGTATTCGAATG 59.460 50.000 20.87 4.70 39.71 2.67
17 18 2.483188 GGTGCCTCTTCCGTATTCGAAT 60.483 50.000 16.15 16.15 39.71 3.34
18 19 1.134907 GGTGCCTCTTCCGTATTCGAA 60.135 52.381 0.00 0.00 39.71 3.71
19 20 0.458669 GGTGCCTCTTCCGTATTCGA 59.541 55.000 0.00 0.00 39.71 3.71
20 21 0.870307 CGGTGCCTCTTCCGTATTCG 60.870 60.000 0.00 0.00 41.58 3.34
21 22 2.973420 CGGTGCCTCTTCCGTATTC 58.027 57.895 0.00 0.00 41.58 1.75
27 28 0.733150 GCAAATACGGTGCCTCTTCC 59.267 55.000 0.00 0.00 35.91 3.46
28 29 1.130561 GTGCAAATACGGTGCCTCTTC 59.869 52.381 0.00 0.00 41.49 2.87
29 30 1.165270 GTGCAAATACGGTGCCTCTT 58.835 50.000 0.00 0.00 41.49 2.85
30 31 1.019278 CGTGCAAATACGGTGCCTCT 61.019 55.000 0.00 0.00 41.49 3.69
31 32 1.423845 CGTGCAAATACGGTGCCTC 59.576 57.895 0.00 0.00 41.49 4.70
32 33 3.573558 CGTGCAAATACGGTGCCT 58.426 55.556 0.00 0.00 41.49 4.75
38 39 1.295357 TGTCTGGCCGTGCAAATACG 61.295 55.000 0.00 0.00 43.35 3.06
39 40 0.878416 TTGTCTGGCCGTGCAAATAC 59.122 50.000 0.00 0.00 0.00 1.89
40 41 1.164411 CTTGTCTGGCCGTGCAAATA 58.836 50.000 0.00 0.00 0.00 1.40
41 42 0.823356 ACTTGTCTGGCCGTGCAAAT 60.823 50.000 0.00 0.00 0.00 2.32
42 43 1.034838 AACTTGTCTGGCCGTGCAAA 61.035 50.000 0.00 0.00 0.00 3.68
43 44 1.444119 GAACTTGTCTGGCCGTGCAA 61.444 55.000 0.00 1.64 0.00 4.08
44 45 1.891919 GAACTTGTCTGGCCGTGCA 60.892 57.895 0.00 0.00 0.00 4.57
45 46 2.946762 GAACTTGTCTGGCCGTGC 59.053 61.111 0.00 0.00 0.00 5.34
46 47 1.284982 CTCGAACTTGTCTGGCCGTG 61.285 60.000 0.00 0.00 0.00 4.94
47 48 1.006102 CTCGAACTTGTCTGGCCGT 60.006 57.895 0.00 0.00 0.00 5.68
48 49 2.383527 GCTCGAACTTGTCTGGCCG 61.384 63.158 0.00 0.00 0.00 6.13
49 50 1.301716 TGCTCGAACTTGTCTGGCC 60.302 57.895 0.00 0.00 0.00 5.36
50 51 1.569479 GGTGCTCGAACTTGTCTGGC 61.569 60.000 0.00 0.00 0.00 4.85
51 52 0.249868 TGGTGCTCGAACTTGTCTGG 60.250 55.000 0.00 0.00 0.00 3.86
52 53 1.581934 TTGGTGCTCGAACTTGTCTG 58.418 50.000 0.00 0.00 0.00 3.51
53 54 2.550830 ATTGGTGCTCGAACTTGTCT 57.449 45.000 0.00 0.00 0.00 3.41
54 55 3.003275 TGAAATTGGTGCTCGAACTTGTC 59.997 43.478 0.00 0.00 0.00 3.18
55 56 2.948979 TGAAATTGGTGCTCGAACTTGT 59.051 40.909 0.00 0.00 0.00 3.16
56 57 3.624326 TGAAATTGGTGCTCGAACTTG 57.376 42.857 0.00 0.00 0.00 3.16
57 58 7.807977 ATATATGAAATTGGTGCTCGAACTT 57.192 32.000 0.00 0.00 0.00 2.66
58 59 7.807977 AATATATGAAATTGGTGCTCGAACT 57.192 32.000 0.00 0.00 0.00 3.01
59 60 7.321271 CGAAATATATGAAATTGGTGCTCGAAC 59.679 37.037 0.00 0.00 0.00 3.95
60 61 7.351981 CGAAATATATGAAATTGGTGCTCGAA 58.648 34.615 0.00 0.00 0.00 3.71
61 62 6.565811 GCGAAATATATGAAATTGGTGCTCGA 60.566 38.462 0.00 0.00 0.00 4.04
62 63 5.565259 GCGAAATATATGAAATTGGTGCTCG 59.435 40.000 0.00 0.00 0.00 5.03
63 64 6.437928 TGCGAAATATATGAAATTGGTGCTC 58.562 36.000 0.00 0.00 0.00 4.26
64 65 6.389830 TGCGAAATATATGAAATTGGTGCT 57.610 33.333 0.00 0.00 0.00 4.40
65 66 7.642071 ATTGCGAAATATATGAAATTGGTGC 57.358 32.000 0.00 0.00 0.00 5.01
71 72 9.979578 TGCCTAAAATTGCGAAATATATGAAAT 57.020 25.926 0.00 0.00 0.00 2.17
72 73 9.243637 GTGCCTAAAATTGCGAAATATATGAAA 57.756 29.630 0.00 0.00 0.00 2.69
73 74 7.865385 GGTGCCTAAAATTGCGAAATATATGAA 59.135 33.333 0.00 0.00 0.00 2.57
74 75 7.013750 TGGTGCCTAAAATTGCGAAATATATGA 59.986 33.333 0.00 0.00 0.00 2.15
75 76 7.144661 TGGTGCCTAAAATTGCGAAATATATG 58.855 34.615 0.00 0.00 0.00 1.78
76 77 7.283625 TGGTGCCTAAAATTGCGAAATATAT 57.716 32.000 0.00 0.00 0.00 0.86
77 78 6.701145 TGGTGCCTAAAATTGCGAAATATA 57.299 33.333 0.00 0.00 0.00 0.86
78 79 5.590530 TGGTGCCTAAAATTGCGAAATAT 57.409 34.783 0.00 0.00 0.00 1.28
79 80 5.392767 TTGGTGCCTAAAATTGCGAAATA 57.607 34.783 0.00 0.00 0.00 1.40
80 81 3.951775 TGGTGCCTAAAATTGCGAAAT 57.048 38.095 0.00 0.00 0.00 2.17
81 82 3.735237 TTGGTGCCTAAAATTGCGAAA 57.265 38.095 0.00 0.00 0.00 3.46
82 83 3.068873 AGTTTGGTGCCTAAAATTGCGAA 59.931 39.130 0.00 0.00 0.00 4.70
83 84 2.625790 AGTTTGGTGCCTAAAATTGCGA 59.374 40.909 0.00 0.00 0.00 5.10
84 85 2.730928 CAGTTTGGTGCCTAAAATTGCG 59.269 45.455 0.00 0.00 0.00 4.85
85 86 3.988819 TCAGTTTGGTGCCTAAAATTGC 58.011 40.909 0.00 0.00 0.00 3.56
86 87 4.858692 CGATCAGTTTGGTGCCTAAAATTG 59.141 41.667 0.00 0.00 0.00 2.32
87 88 4.522789 ACGATCAGTTTGGTGCCTAAAATT 59.477 37.500 0.00 0.00 0.00 1.82
88 89 4.079253 ACGATCAGTTTGGTGCCTAAAAT 58.921 39.130 0.00 0.00 0.00 1.82
89 90 3.252215 CACGATCAGTTTGGTGCCTAAAA 59.748 43.478 0.00 0.00 0.00 1.52
90 91 2.811431 CACGATCAGTTTGGTGCCTAAA 59.189 45.455 0.00 0.00 0.00 1.85
91 92 2.422597 CACGATCAGTTTGGTGCCTAA 58.577 47.619 0.00 0.00 0.00 2.69
92 93 2.093306 CACGATCAGTTTGGTGCCTA 57.907 50.000 0.00 0.00 0.00 3.93
93 94 2.932663 CACGATCAGTTTGGTGCCT 58.067 52.632 0.00 0.00 0.00 4.75
96 97 0.518636 CCTGCACGATCAGTTTGGTG 59.481 55.000 0.00 0.00 32.32 4.17
97 98 0.396435 TCCTGCACGATCAGTTTGGT 59.604 50.000 0.00 0.00 32.32 3.67
98 99 0.798776 GTCCTGCACGATCAGTTTGG 59.201 55.000 0.00 0.00 32.32 3.28
99 100 1.511850 TGTCCTGCACGATCAGTTTG 58.488 50.000 0.00 0.00 32.32 2.93
100 101 2.146342 CTTGTCCTGCACGATCAGTTT 58.854 47.619 0.00 0.00 32.32 2.66
101 102 1.070758 ACTTGTCCTGCACGATCAGTT 59.929 47.619 0.00 0.00 32.32 3.16
102 103 0.681733 ACTTGTCCTGCACGATCAGT 59.318 50.000 0.00 0.00 32.32 3.41
103 104 1.800805 AACTTGTCCTGCACGATCAG 58.199 50.000 0.00 0.00 0.00 2.90
104 105 2.254546 AAACTTGTCCTGCACGATCA 57.745 45.000 0.00 0.00 0.00 2.92
105 106 2.673368 CCTAAACTTGTCCTGCACGATC 59.327 50.000 0.00 0.00 0.00 3.69
106 107 2.699954 CCTAAACTTGTCCTGCACGAT 58.300 47.619 0.00 0.00 0.00 3.73
107 108 1.876416 GCCTAAACTTGTCCTGCACGA 60.876 52.381 0.00 0.00 0.00 4.35
108 109 0.517316 GCCTAAACTTGTCCTGCACG 59.483 55.000 0.00 0.00 0.00 5.34
109 110 1.537202 CTGCCTAAACTTGTCCTGCAC 59.463 52.381 0.00 0.00 0.00 4.57
110 111 1.896220 CTGCCTAAACTTGTCCTGCA 58.104 50.000 0.00 0.00 0.00 4.41
111 112 0.523519 GCTGCCTAAACTTGTCCTGC 59.476 55.000 0.00 0.00 0.00 4.85
112 113 1.537202 GTGCTGCCTAAACTTGTCCTG 59.463 52.381 0.00 0.00 0.00 3.86
113 114 1.545651 GGTGCTGCCTAAACTTGTCCT 60.546 52.381 0.00 0.00 0.00 3.85
114 115 0.881796 GGTGCTGCCTAAACTTGTCC 59.118 55.000 0.00 0.00 0.00 4.02
115 116 1.537202 CTGGTGCTGCCTAAACTTGTC 59.463 52.381 0.00 0.00 38.35 3.18
116 117 1.133792 ACTGGTGCTGCCTAAACTTGT 60.134 47.619 0.00 0.00 38.35 3.16
117 118 1.267806 CACTGGTGCTGCCTAAACTTG 59.732 52.381 0.00 0.00 38.35 3.16
118 119 1.133792 ACACTGGTGCTGCCTAAACTT 60.134 47.619 0.00 0.00 38.35 2.66
119 120 0.474184 ACACTGGTGCTGCCTAAACT 59.526 50.000 0.00 0.00 38.35 2.66
120 121 2.178912 TACACTGGTGCTGCCTAAAC 57.821 50.000 0.00 0.00 38.35 2.01
121 122 3.433306 AATACACTGGTGCTGCCTAAA 57.567 42.857 0.00 0.00 38.35 1.85
122 123 3.433306 AAATACACTGGTGCTGCCTAA 57.567 42.857 0.00 0.00 38.35 2.69
123 124 4.019681 AGTTAAATACACTGGTGCTGCCTA 60.020 41.667 0.00 0.00 38.35 3.93
124 125 3.081804 GTTAAATACACTGGTGCTGCCT 58.918 45.455 0.00 0.00 38.35 4.75
125 126 3.081804 AGTTAAATACACTGGTGCTGCC 58.918 45.455 0.00 0.00 37.90 4.85
126 127 4.003648 AGAGTTAAATACACTGGTGCTGC 58.996 43.478 0.17 0.00 0.00 5.25
127 128 6.560253 AAAGAGTTAAATACACTGGTGCTG 57.440 37.500 0.17 0.00 0.00 4.41
128 129 8.154856 TCTAAAAGAGTTAAATACACTGGTGCT 58.845 33.333 0.17 0.00 0.00 4.40
129 130 8.319143 TCTAAAAGAGTTAAATACACTGGTGC 57.681 34.615 0.17 0.00 0.00 5.01
144 145 8.607459 CGCAGAAATTGATGTATCTAAAAGAGT 58.393 33.333 0.00 0.00 0.00 3.24
145 146 8.820933 TCGCAGAAATTGATGTATCTAAAAGAG 58.179 33.333 0.00 0.00 0.00 2.85
146 147 8.604035 GTCGCAGAAATTGATGTATCTAAAAGA 58.396 33.333 0.00 0.00 39.69 2.52
147 148 8.607459 AGTCGCAGAAATTGATGTATCTAAAAG 58.393 33.333 0.00 0.00 39.69 2.27
148 149 8.492673 AGTCGCAGAAATTGATGTATCTAAAA 57.507 30.769 0.00 0.00 39.69 1.52
149 150 7.981789 AGAGTCGCAGAAATTGATGTATCTAAA 59.018 33.333 0.00 0.00 39.69 1.85
150 151 7.492524 AGAGTCGCAGAAATTGATGTATCTAA 58.507 34.615 0.00 0.00 39.69 2.10
151 152 7.013750 AGAGAGTCGCAGAAATTGATGTATCTA 59.986 37.037 0.00 0.00 39.69 1.98
152 153 5.911752 AGAGTCGCAGAAATTGATGTATCT 58.088 37.500 0.00 0.00 39.69 1.98
153 154 5.982516 AGAGAGTCGCAGAAATTGATGTATC 59.017 40.000 0.00 0.00 39.69 2.24
154 155 5.911752 AGAGAGTCGCAGAAATTGATGTAT 58.088 37.500 0.00 0.00 39.69 2.29
155 156 5.126222 AGAGAGAGTCGCAGAAATTGATGTA 59.874 40.000 0.00 0.00 39.69 2.29
156 157 4.081752 AGAGAGAGTCGCAGAAATTGATGT 60.082 41.667 0.00 0.00 39.69 3.06
157 158 4.268167 CAGAGAGAGTCGCAGAAATTGATG 59.732 45.833 0.00 0.00 39.69 3.07
158 159 4.081752 ACAGAGAGAGTCGCAGAAATTGAT 60.082 41.667 0.00 0.00 39.69 2.57
159 160 3.256879 ACAGAGAGAGTCGCAGAAATTGA 59.743 43.478 0.00 0.00 39.69 2.57
160 161 3.583806 ACAGAGAGAGTCGCAGAAATTG 58.416 45.455 0.00 0.00 39.69 2.32
161 162 3.951775 ACAGAGAGAGTCGCAGAAATT 57.048 42.857 0.00 0.00 39.69 1.82
162 163 3.367910 GGAACAGAGAGAGTCGCAGAAAT 60.368 47.826 0.00 0.00 39.69 2.17
163 164 2.029828 GGAACAGAGAGAGTCGCAGAAA 60.030 50.000 0.00 0.00 39.69 2.52
164 165 1.542030 GGAACAGAGAGAGTCGCAGAA 59.458 52.381 0.00 0.00 39.69 3.02
165 166 1.169577 GGAACAGAGAGAGTCGCAGA 58.830 55.000 0.00 0.00 0.00 4.26
166 167 0.179176 CGGAACAGAGAGAGTCGCAG 60.179 60.000 0.00 0.00 0.00 5.18
167 168 0.605589 TCGGAACAGAGAGAGTCGCA 60.606 55.000 0.00 0.00 0.00 5.10
168 169 0.522180 TTCGGAACAGAGAGAGTCGC 59.478 55.000 0.00 0.00 0.00 5.19
169 170 3.495670 AATTCGGAACAGAGAGAGTCG 57.504 47.619 0.00 0.00 0.00 4.18
170 171 6.565234 TGAATAATTCGGAACAGAGAGAGTC 58.435 40.000 0.00 0.00 0.00 3.36
171 172 6.531503 TGAATAATTCGGAACAGAGAGAGT 57.468 37.500 0.00 0.00 0.00 3.24
172 173 6.362016 CGATGAATAATTCGGAACAGAGAGAG 59.638 42.308 0.00 0.00 0.00 3.20
173 174 6.209361 CGATGAATAATTCGGAACAGAGAGA 58.791 40.000 0.00 0.00 0.00 3.10
174 175 5.107683 GCGATGAATAATTCGGAACAGAGAG 60.108 44.000 0.00 0.00 35.93 3.20
175 176 4.745125 GCGATGAATAATTCGGAACAGAGA 59.255 41.667 0.00 0.00 35.93 3.10
176 177 4.507756 TGCGATGAATAATTCGGAACAGAG 59.492 41.667 0.00 0.00 35.93 3.35
177 178 4.438148 TGCGATGAATAATTCGGAACAGA 58.562 39.130 0.00 0.00 35.93 3.41
178 179 4.507756 TCTGCGATGAATAATTCGGAACAG 59.492 41.667 0.00 0.00 35.28 3.16
179 180 4.438148 TCTGCGATGAATAATTCGGAACA 58.562 39.130 0.00 0.00 35.28 3.18
180 181 5.403897 TTCTGCGATGAATAATTCGGAAC 57.596 39.130 0.00 0.00 35.28 3.62
181 182 6.618287 ATTTCTGCGATGAATAATTCGGAA 57.382 33.333 0.00 0.00 35.28 4.30
182 183 6.259829 TCAATTTCTGCGATGAATAATTCGGA 59.740 34.615 0.00 0.00 35.93 4.55
183 184 6.429624 TCAATTTCTGCGATGAATAATTCGG 58.570 36.000 0.00 0.00 35.93 4.30
184 185 7.588854 ACATCAATTTCTGCGATGAATAATTCG 59.411 33.333 9.10 0.00 39.09 3.34
185 186 8.792831 ACATCAATTTCTGCGATGAATAATTC 57.207 30.769 9.10 0.00 39.09 2.17
190 191 9.276590 TCTAATACATCAATTTCTGCGATGAAT 57.723 29.630 9.10 0.00 39.09 2.57
191 192 8.661352 TCTAATACATCAATTTCTGCGATGAA 57.339 30.769 9.10 0.00 39.09 2.57
192 193 8.715088 CATCTAATACATCAATTTCTGCGATGA 58.285 33.333 9.10 0.00 39.09 2.92
193 194 8.501580 ACATCTAATACATCAATTTCTGCGATG 58.498 33.333 0.00 0.00 41.84 3.84
194 195 8.613060 ACATCTAATACATCAATTTCTGCGAT 57.387 30.769 0.00 0.00 0.00 4.58
195 196 9.710900 ATACATCTAATACATCAATTTCTGCGA 57.289 29.630 0.00 0.00 0.00 5.10
225 226 9.593134 GTCGCAGAAATGGATATATCTAGAATT 57.407 33.333 12.42 3.93 39.69 2.17
226 227 7.918033 CGTCGCAGAAATGGATATATCTAGAAT 59.082 37.037 12.42 0.00 39.69 2.40
227 228 7.120726 TCGTCGCAGAAATGGATATATCTAGAA 59.879 37.037 12.42 0.00 39.69 2.10
228 229 6.598064 TCGTCGCAGAAATGGATATATCTAGA 59.402 38.462 12.42 0.00 39.69 2.43
229 230 6.786207 TCGTCGCAGAAATGGATATATCTAG 58.214 40.000 12.42 0.00 39.69 2.43
230 231 6.374613 ACTCGTCGCAGAAATGGATATATCTA 59.625 38.462 12.42 6.97 39.69 1.98
231 232 5.184096 ACTCGTCGCAGAAATGGATATATCT 59.816 40.000 12.42 0.00 39.69 1.98
232 233 5.403246 ACTCGTCGCAGAAATGGATATATC 58.597 41.667 3.96 3.96 39.69 1.63
233 234 5.392767 ACTCGTCGCAGAAATGGATATAT 57.607 39.130 0.00 0.00 39.69 0.86
234 235 4.848562 ACTCGTCGCAGAAATGGATATA 57.151 40.909 0.00 0.00 39.69 0.86
235 236 3.735237 ACTCGTCGCAGAAATGGATAT 57.265 42.857 0.00 0.00 39.69 1.63
236 237 4.642445 TTACTCGTCGCAGAAATGGATA 57.358 40.909 0.00 0.00 39.69 2.59
237 238 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
238 239 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
239 240 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
240 241 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
241 242 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
242 243 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
243 244 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
244 245 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
245 246 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
246 247 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
247 248 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
248 249 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
249 250 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
250 251 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
251 252 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
252 253 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
253 254 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
254 255 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
255 256 6.555738 TGATATACTCCCTCCGTTCCAAATTA 59.444 38.462 0.00 0.00 0.00 1.40
256 257 5.368523 TGATATACTCCCTCCGTTCCAAATT 59.631 40.000 0.00 0.00 0.00 1.82
257 258 4.905456 TGATATACTCCCTCCGTTCCAAAT 59.095 41.667 0.00 0.00 0.00 2.32
258 259 4.291792 TGATATACTCCCTCCGTTCCAAA 58.708 43.478 0.00 0.00 0.00 3.28
259 260 3.895656 CTGATATACTCCCTCCGTTCCAA 59.104 47.826 0.00 0.00 0.00 3.53
260 261 3.139584 TCTGATATACTCCCTCCGTTCCA 59.860 47.826 0.00 0.00 0.00 3.53
261 262 3.506844 GTCTGATATACTCCCTCCGTTCC 59.493 52.174 0.00 0.00 0.00 3.62
262 263 4.142790 TGTCTGATATACTCCCTCCGTTC 58.857 47.826 0.00 0.00 0.00 3.95
263 264 4.180377 TGTCTGATATACTCCCTCCGTT 57.820 45.455 0.00 0.00 0.00 4.44
264 265 3.878237 TGTCTGATATACTCCCTCCGT 57.122 47.619 0.00 0.00 0.00 4.69
265 266 5.730296 ATTTGTCTGATATACTCCCTCCG 57.270 43.478 0.00 0.00 0.00 4.63
266 267 6.351456 GCCTATTTGTCTGATATACTCCCTCC 60.351 46.154 0.00 0.00 0.00 4.30
267 268 6.439058 AGCCTATTTGTCTGATATACTCCCTC 59.561 42.308 0.00 0.00 0.00 4.30
268 269 6.212388 CAGCCTATTTGTCTGATATACTCCCT 59.788 42.308 0.00 0.00 0.00 4.20
269 270 6.014156 ACAGCCTATTTGTCTGATATACTCCC 60.014 42.308 0.00 0.00 0.00 4.30
270 271 6.998802 ACAGCCTATTTGTCTGATATACTCC 58.001 40.000 0.00 0.00 0.00 3.85
271 272 7.093992 GGACAGCCTATTTGTCTGATATACTC 58.906 42.308 5.49 0.00 43.44 2.59
272 273 6.014156 GGGACAGCCTATTTGTCTGATATACT 60.014 42.308 5.49 0.00 43.44 2.12
273 274 6.166982 GGGACAGCCTATTTGTCTGATATAC 58.833 44.000 5.49 0.00 43.44 1.47
291 292 4.520492 ACATGTCTAAGCTTTTTGGGACAG 59.480 41.667 3.20 8.48 42.39 3.51
369 371 5.067283 AGCGCTAAAACCAATTTTATCGGAT 59.933 36.000 8.99 0.00 44.36 4.18
380 382 4.991687 CCCAAATTTTAGCGCTAAAACCAA 59.008 37.500 42.13 28.53 44.68 3.67
381 383 4.561105 CCCAAATTTTAGCGCTAAAACCA 58.439 39.130 42.13 28.84 44.68 3.67
382 384 3.930229 CCCCAAATTTTAGCGCTAAAACC 59.070 43.478 42.13 1.45 44.68 3.27
383 385 4.624024 GTCCCCAAATTTTAGCGCTAAAAC 59.376 41.667 42.13 29.33 44.68 2.43
384 386 4.525100 AGTCCCCAAATTTTAGCGCTAAAA 59.475 37.500 41.56 41.56 45.56 1.52
401 404 1.534729 ATCAGCGTTTCAAAGTCCCC 58.465 50.000 0.00 0.00 0.00 4.81
404 407 5.281727 AGGAAAAATCAGCGTTTCAAAGTC 58.718 37.500 0.00 0.00 35.80 3.01
413 416 4.558697 GCTGGTAAAAGGAAAAATCAGCGT 60.559 41.667 0.00 0.00 37.28 5.07
542 562 4.442893 CCAAGAGGGATCACGTTTAGCATA 60.443 45.833 0.00 0.00 40.01 3.14
752 794 1.746991 CTGGGGCGGAAGAAGAAGC 60.747 63.158 0.00 0.00 0.00 3.86
764 806 2.125106 AAATCTCGCGACTGGGGC 60.125 61.111 3.71 0.00 0.00 5.80
765 807 1.815421 CCAAATCTCGCGACTGGGG 60.815 63.158 3.71 0.00 0.00 4.96
770 812 0.716108 CACTCACCAAATCTCGCGAC 59.284 55.000 3.71 0.00 0.00 5.19
811 853 1.664965 GGGATTCGGATTCGGCGAG 60.665 63.158 10.46 0.00 36.95 5.03
815 857 1.598130 GCCTGGGATTCGGATTCGG 60.598 63.158 0.00 0.00 36.95 4.30
816 858 0.882042 CAGCCTGGGATTCGGATTCG 60.882 60.000 0.00 0.00 37.82 3.34
817 859 0.469917 TCAGCCTGGGATTCGGATTC 59.530 55.000 0.00 0.00 0.00 2.52
818 860 0.181350 GTCAGCCTGGGATTCGGATT 59.819 55.000 0.00 0.00 0.00 3.01
819 861 0.982852 TGTCAGCCTGGGATTCGGAT 60.983 55.000 0.00 0.00 0.00 4.18
820 862 1.612146 TGTCAGCCTGGGATTCGGA 60.612 57.895 0.00 0.00 0.00 4.55
930 980 0.603707 CTGTTCGCTGCAGGAAGGAA 60.604 55.000 17.12 5.53 0.00 3.36
931 981 1.004560 CTGTTCGCTGCAGGAAGGA 60.005 57.895 17.12 6.21 0.00 3.36
932 982 1.294659 GACTGTTCGCTGCAGGAAGG 61.295 60.000 17.12 13.78 38.22 3.46
933 983 0.320247 AGACTGTTCGCTGCAGGAAG 60.320 55.000 17.12 8.76 38.22 3.46
952 1002 1.078918 CAGTGGAGCGCTGAATCCA 60.079 57.895 18.48 14.39 43.78 3.41
976 1033 0.247974 GCTTGCTGTTGCTGCTATCG 60.248 55.000 0.00 0.00 40.48 2.92
980 1037 1.362717 CTTGCTTGCTGTTGCTGCT 59.637 52.632 0.00 0.00 39.01 4.24
981 1038 2.308039 GCTTGCTTGCTGTTGCTGC 61.308 57.895 0.00 0.00 40.48 5.25
982 1039 0.319555 ATGCTTGCTTGCTGTTGCTG 60.320 50.000 3.47 0.00 40.48 4.41
985 1042 0.669318 CCCATGCTTGCTTGCTGTTG 60.669 55.000 3.37 0.00 0.00 3.33
987 1044 2.939261 GCCCATGCTTGCTTGCTGT 61.939 57.895 3.37 0.00 33.53 4.40
992 1049 3.376078 CACCGCCCATGCTTGCTT 61.376 61.111 0.00 0.00 34.43 3.91
996 1053 2.786512 ATCCAACACCGCCCATGCTT 62.787 55.000 0.00 0.00 34.43 3.91
1005 1062 1.221840 CCTCCTCCATCCAACACCG 59.778 63.158 0.00 0.00 0.00 4.94
1045 1102 4.247380 GCTCTCCCAGCCCCATCG 62.247 72.222 0.00 0.00 43.17 3.84
1098 1155 3.256960 TGGGGTGGAGGTGGAAGC 61.257 66.667 0.00 0.00 0.00 3.86
1099 1156 1.500783 ATGTGGGGTGGAGGTGGAAG 61.501 60.000 0.00 0.00 0.00 3.46
1140 1197 2.159043 AGAACGCGAGATGGACATGAAT 60.159 45.455 15.93 0.00 0.00 2.57
1142 1199 0.817654 AGAACGCGAGATGGACATGA 59.182 50.000 15.93 0.00 0.00 3.07
1143 1200 1.590238 GAAGAACGCGAGATGGACATG 59.410 52.381 15.93 0.00 0.00 3.21
1146 1203 1.133407 AGAGAAGAACGCGAGATGGAC 59.867 52.381 15.93 0.00 0.00 4.02
1148 1205 1.554392 CAGAGAAGAACGCGAGATGG 58.446 55.000 15.93 0.00 0.00 3.51
1161 1256 1.208052 GCAGGTGATACAGGCAGAGAA 59.792 52.381 0.00 0.00 0.00 2.87
1169 1264 3.668447 ACTCAAGTTGCAGGTGATACAG 58.332 45.455 0.00 0.00 0.00 2.74
1181 1276 1.066914 GCTCTGCTCGACTCAAGTTG 58.933 55.000 0.00 0.00 0.00 3.16
1215 1310 5.845614 AGATCAGAGCTCCTTCCAATCTTAT 59.154 40.000 10.93 0.00 0.00 1.73
1216 1311 5.215069 AGATCAGAGCTCCTTCCAATCTTA 58.785 41.667 10.93 0.00 0.00 2.10
1219 1314 4.420522 AAGATCAGAGCTCCTTCCAATC 57.579 45.455 10.93 4.96 0.00 2.67
1220 1315 4.525024 CAAAGATCAGAGCTCCTTCCAAT 58.475 43.478 10.93 0.00 0.00 3.16
1233 1328 2.223971 GGATGCATTGGCCAAAGATCAG 60.224 50.000 24.71 9.42 40.13 2.90
1244 1339 2.818432 GCCTATCAGAAGGATGCATTGG 59.182 50.000 0.00 0.00 39.15 3.16
1283 1385 7.893302 ACACCTCATAATCATAAACAAGGGAAA 59.107 33.333 0.00 0.00 0.00 3.13
1288 1390 6.974622 GCCAACACCTCATAATCATAAACAAG 59.025 38.462 0.00 0.00 0.00 3.16
1465 1572 7.226523 GCAAACCACTTTTGAACAAGGAATAAT 59.773 33.333 0.91 0.00 46.76 1.28
1473 1580 3.594134 CAGGCAAACCACTTTTGAACAA 58.406 40.909 0.91 0.00 46.76 2.83
1483 1590 5.828299 TGTATAATTAGCAGGCAAACCAC 57.172 39.130 0.00 0.00 39.06 4.16
1492 1599 7.323656 GCGGCTTTTTACATGTATAATTAGCAG 59.676 37.037 22.91 20.94 0.00 4.24
1494 1601 7.136119 TGCGGCTTTTTACATGTATAATTAGC 58.864 34.615 17.56 17.56 0.00 3.09
1515 1622 1.754803 TGTCAGAGTAGGGTAATGCGG 59.245 52.381 0.00 0.00 0.00 5.69
1517 1624 2.165845 ACGTGTCAGAGTAGGGTAATGC 59.834 50.000 0.00 0.00 0.00 3.56
1520 1627 4.292186 ACTACGTGTCAGAGTAGGGTAA 57.708 45.455 15.75 0.00 43.26 2.85
1523 1630 4.235360 CAAAACTACGTGTCAGAGTAGGG 58.765 47.826 15.75 3.82 43.26 3.53
1525 1632 4.680110 CCACAAAACTACGTGTCAGAGTAG 59.320 45.833 0.00 11.76 44.21 2.57
1528 1635 3.454375 ACCACAAAACTACGTGTCAGAG 58.546 45.455 0.00 0.00 0.00 3.35
1532 1639 2.195922 ACGACCACAAAACTACGTGTC 58.804 47.619 0.00 0.00 32.93 3.67
1538 1645 6.037391 CAGGTTTTAAGACGACCACAAAACTA 59.963 38.462 14.12 0.00 38.51 2.24
1543 1650 3.876341 ACAGGTTTTAAGACGACCACAA 58.124 40.909 0.00 0.00 35.89 3.33
1550 1657 5.524646 TGGTCTAACAACAGGTTTTAAGACG 59.475 40.000 9.56 0.00 40.86 4.18
1553 1660 6.488683 TGGATGGTCTAACAACAGGTTTTAAG 59.511 38.462 0.00 0.00 40.96 1.85
1559 1666 3.137544 TGTTGGATGGTCTAACAACAGGT 59.862 43.478 6.44 0.00 43.34 4.00
1560 1667 3.750371 TGTTGGATGGTCTAACAACAGG 58.250 45.455 6.44 0.00 43.34 4.00
1596 1703 3.507233 TGGCAACCTCATTTCTGAACATC 59.493 43.478 0.00 0.00 0.00 3.06
1613 1720 2.038426 TCGGAGAACTTCTTCATGGCAA 59.962 45.455 0.00 0.00 0.00 4.52
1662 1769 2.952978 ACTCGACTCAGACACTTCAAGT 59.047 45.455 0.00 0.00 0.00 3.16
1689 1796 5.487488 AGAGGAAGGTAACATGGTGATTACA 59.513 40.000 0.00 0.00 41.41 2.41
1702 1809 1.668826 ACATGGGCAGAGGAAGGTAA 58.331 50.000 0.00 0.00 0.00 2.85
1743 1850 2.509052 TGTGAGTCACCAACTTCTCG 57.491 50.000 20.43 0.00 38.74 4.04
1790 1897 6.591001 AGCATTTGATTTGGTAAAGGTGTTT 58.409 32.000 0.00 0.00 0.00 2.83
1794 1901 7.378181 CACTAAGCATTTGATTTGGTAAAGGT 58.622 34.615 0.00 0.00 0.00 3.50
1824 1931 4.543590 TCTAAGACCTGAAAAGAGCCTG 57.456 45.455 0.00 0.00 0.00 4.85
1859 1966 1.231958 TTACCAAGCAAGCCGTTCCG 61.232 55.000 0.00 0.00 0.00 4.30
1933 2040 8.863872 TGTCCATAGATATCTTTCTCGATGTA 57.136 34.615 11.25 0.00 0.00 2.29
1939 2046 9.421806 CTTGACATGTCCATAGATATCTTTCTC 57.578 37.037 22.85 0.00 0.00 2.87
1981 2088 3.149196 TGGCAGATCACAACCTTTCTTC 58.851 45.455 0.00 0.00 0.00 2.87
2084 2192 6.038997 ACAGATAAGGACACAGTTAAGACC 57.961 41.667 0.00 0.00 0.00 3.85
2090 2198 2.572104 GGGGACAGATAAGGACACAGTT 59.428 50.000 0.00 0.00 0.00 3.16
2096 2204 1.335132 TGCCGGGGACAGATAAGGAC 61.335 60.000 2.18 0.00 0.00 3.85
2098 2206 0.463833 GTTGCCGGGGACAGATAAGG 60.464 60.000 2.18 0.00 0.00 2.69
2099 2207 0.251916 TGTTGCCGGGGACAGATAAG 59.748 55.000 2.18 0.00 0.00 1.73
2120 2228 7.928307 AACTCAAATGTGCAGATAGTGTTAT 57.072 32.000 12.08 0.00 0.00 1.89
2124 2232 6.183360 TGCATAACTCAAATGTGCAGATAGTG 60.183 38.462 0.00 0.00 39.54 2.74
2148 2264 5.645067 TGAAGATACAGAAAAGGCAGACATG 59.355 40.000 0.00 0.00 0.00 3.21
2153 2269 3.376546 GCCTGAAGATACAGAAAAGGCAG 59.623 47.826 5.93 0.00 46.37 4.85
2291 2407 5.376625 ACAAAGTCTCTGTATTTTCTGGCA 58.623 37.500 0.00 0.00 0.00 4.92
2523 2639 6.866770 AGTTTGAATCATCTGTGCATGAAAAG 59.133 34.615 0.00 0.00 36.36 2.27
2556 2672 7.035612 GCTTTGCAGCCTTAAAAGTACATATT 58.964 34.615 0.00 0.00 40.61 1.28
2581 2697 3.254166 GCCATGGCCATATTGTTACAGAG 59.746 47.826 27.24 0.62 34.56 3.35
2604 2720 0.395311 AGACCCCAAGCATGCTGATG 60.395 55.000 23.48 16.77 0.00 3.07
2619 2735 2.436824 GCAAAGGCCTCGGAGACC 60.437 66.667 5.23 4.01 0.00 3.85
2625 2741 1.301677 GACCAAGAGCAAAGGCCTCG 61.302 60.000 5.23 0.58 42.56 4.63
2703 2819 3.068873 GGAGACAATACCTACTCCAGCAG 59.931 52.174 0.00 0.00 45.53 4.24
2735 2851 5.877012 AGTACTGCATCTCAAACCACAATAG 59.123 40.000 0.00 0.00 0.00 1.73
2758 2874 1.808411 TGAAGAAGCAAAGCCCGTAG 58.192 50.000 0.00 0.00 0.00 3.51
2926 3044 4.261614 CCCAGAAGGAGCAAACAAAGTTAC 60.262 45.833 0.00 0.00 38.24 2.50
3068 3189 9.855361 CACTTATATTCGACAATCAGAACATTC 57.145 33.333 0.00 0.00 0.00 2.67
3117 3245 6.950842 TGATGTGATTACAAGATTCCAGACT 58.049 36.000 0.00 0.00 40.84 3.24
3150 3278 1.544724 TGCTAAGGGAAACATGCACC 58.455 50.000 0.00 0.00 0.00 5.01
3153 3281 3.236632 CCTTTGCTAAGGGAAACATGC 57.763 47.619 18.10 0.00 46.10 4.06
3178 3306 4.209112 GCACTTAGTTTACACTGTTTCGC 58.791 43.478 0.00 0.00 34.06 4.70
3184 3312 8.424274 TGATCATATGCACTTAGTTTACACTG 57.576 34.615 0.00 0.00 34.06 3.66
3186 3314 9.045223 TGATGATCATATGCACTTAGTTTACAC 57.955 33.333 8.54 0.00 0.00 2.90
3222 3350 2.031682 GCAAACGATGAAGTGTGAGCTT 60.032 45.455 0.00 0.00 31.08 3.74
3244 3372 4.516652 AATCTTTAGCCTGCAGAGGAAT 57.483 40.909 17.39 0.00 42.93 3.01
3389 3528 7.715657 AGTGATTAGTCATGCAACAAAAGAAA 58.284 30.769 0.00 0.00 36.60 2.52
3398 3537 6.092670 GCAGAAACTAGTGATTAGTCATGCAA 59.907 38.462 0.00 0.00 41.80 4.08
3481 3620 1.457009 TTGCCGGTGTAAAAGTGGCC 61.457 55.000 1.90 0.00 45.12 5.36
3521 3660 4.574674 ATGACAAGTTTGCTGGGATAGA 57.425 40.909 0.00 0.00 0.00 1.98
3579 3718 8.139350 GGCACTGTTTAACTAACACCTAAATTT 58.861 33.333 0.00 0.00 41.73 1.82
3620 3759 4.602340 TGTACAAAGGAGACTCCAAGTC 57.398 45.455 23.60 11.85 45.38 3.01
3621 3760 6.875972 ATATGTACAAAGGAGACTCCAAGT 57.124 37.500 23.60 18.69 42.68 3.16
3622 3761 7.106239 ACAATATGTACAAAGGAGACTCCAAG 58.894 38.462 23.60 14.15 42.68 3.61
3623 3762 7.016153 ACAATATGTACAAAGGAGACTCCAA 57.984 36.000 23.60 0.64 42.68 3.53
3624 3763 6.620877 ACAATATGTACAAAGGAGACTCCA 57.379 37.500 23.60 0.82 42.68 3.86
3625 3764 8.258708 ACTAACAATATGTACAAAGGAGACTCC 58.741 37.037 14.15 14.15 42.68 3.85
3666 3805 6.661304 AGAAAATCTGGAAACTTGATTGCT 57.339 33.333 0.00 0.00 35.53 3.91
3714 3853 6.935167 TGTACAAAGAGATGCAGATCAGTAA 58.065 36.000 0.00 0.00 0.00 2.24
3718 3857 8.206189 TCATTATGTACAAAGAGATGCAGATCA 58.794 33.333 0.00 0.00 0.00 2.92
3742 3881 3.009363 TCCAAGCAGACAGAAATGGATCA 59.991 43.478 0.00 0.00 32.28 2.92
3743 3882 3.376546 GTCCAAGCAGACAGAAATGGATC 59.623 47.826 0.00 0.00 39.02 3.36
3744 3883 3.009916 AGTCCAAGCAGACAGAAATGGAT 59.990 43.478 4.64 0.00 39.02 3.41
3781 3921 3.181440 CCTTGTGCATGGGTATATGGACT 60.181 47.826 10.83 0.00 45.95 3.85
3786 3926 2.442878 TCAGCCTTGTGCATGGGTATAT 59.557 45.455 8.20 0.00 44.83 0.86
3787 3927 1.843206 TCAGCCTTGTGCATGGGTATA 59.157 47.619 8.20 0.00 44.83 1.47
3794 3934 3.674138 CGCTTTAATTCAGCCTTGTGCAT 60.674 43.478 0.00 0.00 44.83 3.96
3799 3939 2.478539 GCTCCGCTTTAATTCAGCCTTG 60.479 50.000 4.38 0.00 33.29 3.61
3815 3955 4.685924 TCGGTACCTAAATTAAAGCTCCG 58.314 43.478 10.90 0.00 36.30 4.63
3819 3959 8.856247 CAACAAAATCGGTACCTAAATTAAAGC 58.144 33.333 10.90 0.00 0.00 3.51
3836 5241 8.141268 TGAGAAAATTCAGGGTACAACAAAATC 58.859 33.333 0.00 0.00 0.00 2.17
3840 5245 5.888724 TGTGAGAAAATTCAGGGTACAACAA 59.111 36.000 0.00 0.00 0.00 2.83
3845 5250 6.262273 TGAAGTTGTGAGAAAATTCAGGGTAC 59.738 38.462 0.00 0.00 38.72 3.34
3847 5252 5.200483 TGAAGTTGTGAGAAAATTCAGGGT 58.800 37.500 0.00 0.00 38.72 4.34
3850 5255 8.375465 GTTGTTTGAAGTTGTGAGAAAATTCAG 58.625 33.333 0.94 0.00 42.86 3.02
3852 5257 8.238481 TGTTGTTTGAAGTTGTGAGAAAATTC 57.762 30.769 0.00 0.00 35.31 2.17
3853 5258 8.600449 TTGTTGTTTGAAGTTGTGAGAAAATT 57.400 26.923 0.00 0.00 0.00 1.82
3883 5288 3.486383 GGTGTTGAGTCCTTTCCATTGA 58.514 45.455 0.00 0.00 0.00 2.57
3900 5306 3.337694 TCCGTTTTGAATATCCGGTGT 57.662 42.857 0.00 0.00 39.62 4.16
3921 5327 1.028130 CAGAGCGTATGAGCCTGAGA 58.972 55.000 0.00 0.00 37.50 3.27
3934 5340 0.308684 TTTGCTGTTCTTGCAGAGCG 59.691 50.000 0.00 0.00 41.71 5.03
3964 5370 6.642683 TTCTATCTTTTACTTTCCTTCGCG 57.357 37.500 0.00 0.00 0.00 5.87
4043 5455 8.461222 ACCACACATGTCATTTCATTACATAAG 58.539 33.333 0.00 0.00 32.70 1.73
4089 5573 3.799963 GGTTTTTAGAGCACCGGTTTTTG 59.200 43.478 2.97 0.00 0.00 2.44
4135 5619 1.532794 ATTTGCGTTGGGGAAGGCA 60.533 52.632 0.00 0.00 41.16 4.75
4140 5624 1.532794 AAGGCATTTGCGTTGGGGA 60.533 52.632 9.47 0.00 45.90 4.81
4176 5670 0.625683 ATCCAGGATGCTCAAGGGGT 60.626 55.000 0.00 0.00 31.97 4.95
4205 5765 3.790437 AGCATGTCAGGGGAGCCG 61.790 66.667 0.00 0.00 0.00 5.52
4217 5777 1.089920 GTCAGTGGGCTAACAGCATG 58.910 55.000 0.00 0.00 44.75 4.06
4218 5778 0.692476 TGTCAGTGGGCTAACAGCAT 59.308 50.000 0.00 0.00 44.75 3.79
4222 5782 2.183478 CACATGTCAGTGGGCTAACA 57.817 50.000 0.00 0.00 35.88 2.41
4234 5794 2.044946 GGGCTGGGTCCACATGTC 60.045 66.667 0.00 0.00 0.00 3.06
4242 5802 2.798148 CTAACGTGTGGGGCTGGGTC 62.798 65.000 0.00 0.00 0.00 4.46
4259 5819 2.840038 TCCTCTGACGTACTACACCCTA 59.160 50.000 0.00 0.00 0.00 3.53
4266 5840 4.589798 AGAGCTAGATCCTCTGACGTACTA 59.410 45.833 3.92 0.00 38.21 1.82
4284 5858 2.763448 GTCTGGGTCACAATCTAGAGCT 59.237 50.000 0.00 0.00 33.07 4.09
4289 5863 3.557054 GCAAGTGTCTGGGTCACAATCTA 60.557 47.826 0.00 0.00 38.16 1.98
4310 5884 0.884704 TCCTTCCGAGTGTGCAAAGC 60.885 55.000 0.00 0.00 0.00 3.51
4320 5894 0.318275 GCTATGCGAGTCCTTCCGAG 60.318 60.000 0.00 0.00 0.00 4.63
4321 5895 1.734137 GCTATGCGAGTCCTTCCGA 59.266 57.895 0.00 0.00 0.00 4.55
4322 5896 4.327885 GCTATGCGAGTCCTTCCG 57.672 61.111 0.00 0.00 0.00 4.30
4335 5909 1.734465 GCAGCTTCACTTGAACGCTAT 59.266 47.619 12.57 0.00 36.84 2.97
4342 5916 2.224597 TGATTGAGGCAGCTTCACTTGA 60.225 45.455 6.73 0.00 0.00 3.02
4355 5929 4.338879 AGGTTGGAAGACATTGATTGAGG 58.661 43.478 0.00 0.00 0.00 3.86
4422 5996 4.331168 TGTTTTGTTGTGGCATGTAAAAGC 59.669 37.500 0.00 0.00 0.00 3.51
4427 6001 3.430929 GGGTTGTTTTGTTGTGGCATGTA 60.431 43.478 0.00 0.00 0.00 2.29
4487 6062 9.780186 GATGGTGTCTAGCTTTAGGTTAATATT 57.220 33.333 0.00 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.