Multiple sequence alignment - TraesCS7A01G462400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G462400 chr7A 100.000 2750 0 0 1 2750 658928746 658931495 0.000000e+00 5079.0
1 TraesCS7A01G462400 chr7A 93.558 2018 65 31 1 1971 658983639 658985638 0.000000e+00 2946.0
2 TraesCS7A01G462400 chr7A 96.386 664 20 4 1 661 576065775 576065113 0.000000e+00 1090.0
3 TraesCS7A01G462400 chr7A 95.940 665 22 4 1 661 575927969 575928632 0.000000e+00 1074.0
4 TraesCS7A01G462400 chr7A 93.080 578 17 7 692 1254 575928613 575929182 0.000000e+00 824.0
5 TraesCS7A01G462400 chr7A 90.505 653 21 11 692 1329 576065132 576064506 0.000000e+00 824.0
6 TraesCS7A01G462400 chr7A 88.342 549 37 11 1384 1927 576232637 576233163 3.860000e-178 634.0
7 TraesCS7A01G462400 chr7A 88.160 549 38 12 1384 1927 658809034 658808508 1.800000e-176 628.0
8 TraesCS7A01G462400 chr7A 87.796 549 42 13 1384 1927 658784165 658783637 1.080000e-173 619.0
9 TraesCS7A01G462400 chr7A 96.409 362 10 1 1384 1745 658910664 658910306 6.560000e-166 593.0
10 TraesCS7A01G462400 chr7A 96.409 362 10 1 1384 1745 658959971 658959613 6.560000e-166 593.0
11 TraesCS7A01G462400 chr7A 90.389 437 20 7 595 1010 575460998 575460563 3.090000e-154 555.0
12 TraesCS7A01G462400 chr7A 93.369 377 22 1 1384 1760 576148285 576148658 3.090000e-154 555.0
13 TraesCS7A01G462400 chr7A 84.364 550 68 12 1388 1927 576064507 576063966 8.730000e-145 523.0
14 TraesCS7A01G462400 chr7A 84.691 405 34 11 1 404 575461701 575461324 2.000000e-101 379.0
15 TraesCS7A01G462400 chr7A 89.494 257 23 1 1 253 537847245 537846989 3.420000e-84 322.0
16 TraesCS7A01G462400 chr7A 85.047 214 16 11 2447 2651 658986207 658986413 1.290000e-48 204.0
17 TraesCS7A01G462400 chr7A 87.500 120 15 0 2595 2714 576233785 576233904 3.690000e-29 139.0
18 TraesCS7A01G462400 chr7A 93.333 45 3 0 2673 2717 658783116 658783072 1.770000e-07 67.6
19 TraesCS7A01G462400 chr7A 92.857 42 3 0 2673 2714 576169178 576169219 8.220000e-06 62.1
20 TraesCS7A01G462400 chr7A 88.889 45 5 0 2673 2717 658793908 658793864 3.830000e-04 56.5
21 TraesCS7A01G462400 chr7D 87.209 946 64 27 484 1399 570244510 570243592 0.000000e+00 1024.0
22 TraesCS7A01G462400 chr7D 87.862 552 37 10 1384 1927 569403775 569403246 3.010000e-174 621.0
23 TraesCS7A01G462400 chr7D 84.712 399 54 6 1 394 570244898 570244502 2.570000e-105 392.0
24 TraesCS7A01G462400 chr7D 80.788 203 30 8 402 597 264999300 264999500 1.710000e-32 150.0
25 TraesCS7A01G462400 chr7D 87.850 107 13 0 2611 2717 569402600 569402494 2.870000e-25 126.0
26 TraesCS7A01G462400 chr7D 77.439 164 32 5 241 402 69009766 69009606 2.920000e-15 93.5
27 TraesCS7A01G462400 chr7D 83.333 78 5 3 2357 2433 569453394 569453324 6.360000e-07 65.8
28 TraesCS7A01G462400 chrUn 89.494 257 23 1 1 253 388893957 388893701 3.420000e-84 322.0
29 TraesCS7A01G462400 chrUn 89.105 257 24 1 1 253 53260680 53260936 1.590000e-82 316.0
30 TraesCS7A01G462400 chrUn 94.643 56 2 1 2028 2082 52409784 52409839 4.880000e-13 86.1
31 TraesCS7A01G462400 chr5D 89.494 257 23 1 1 253 6256245 6256501 3.420000e-84 322.0
32 TraesCS7A01G462400 chr5A 80.597 201 30 8 402 597 326718311 326718115 2.210000e-31 147.0
33 TraesCS7A01G462400 chr5A 79.902 204 26 13 402 597 635379368 635379172 4.780000e-28 135.0
34 TraesCS7A01G462400 chr2D 80.851 188 27 8 404 587 601512265 601512083 3.690000e-29 139.0
35 TraesCS7A01G462400 chr2D 89.062 64 6 1 2028 2090 141479510 141479573 8.170000e-11 78.7
36 TraesCS7A01G462400 chr4D 80.541 185 31 4 402 584 490527671 490527852 1.330000e-28 137.0
37 TraesCS7A01G462400 chr2B 90.000 70 5 2 2028 2096 618306790 618306722 3.770000e-14 89.8
38 TraesCS7A01G462400 chr4B 94.643 56 2 1 2028 2082 18970263 18970208 4.880000e-13 86.1
39 TraesCS7A01G462400 chr4B 94.643 56 2 1 2028 2082 19086497 19086552 4.880000e-13 86.1
40 TraesCS7A01G462400 chr4B 94.643 56 2 1 2028 2082 19202121 19202176 4.880000e-13 86.1
41 TraesCS7A01G462400 chr7B 90.769 65 3 3 2028 2090 559535457 559535394 1.750000e-12 84.2
42 TraesCS7A01G462400 chr7B 86.111 72 7 2 254 324 622518571 622518640 1.060000e-09 75.0
43 TraesCS7A01G462400 chr1B 88.571 70 7 1 2028 2096 656252777 656252846 1.750000e-12 84.2
44 TraesCS7A01G462400 chr4A 77.124 153 28 5 254 402 600950322 600950471 6.310000e-12 82.4
45 TraesCS7A01G462400 chr3A 84.615 78 11 1 253 330 35967139 35967063 2.940000e-10 76.8
46 TraesCS7A01G462400 chr2A 85.915 71 9 1 2028 2097 159874428 159874358 1.060000e-09 75.0
47 TraesCS7A01G462400 chr6A 84.286 70 11 0 254 323 602482711 602482642 4.910000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G462400 chr7A 658928746 658931495 2749 False 5079.000000 5079 100.000000 1 2750 1 chr7A.!!$F3 2749
1 TraesCS7A01G462400 chr7A 658983639 658986413 2774 False 1575.000000 2946 89.302500 1 2651 2 chr7A.!!$F6 2650
2 TraesCS7A01G462400 chr7A 575927969 575929182 1213 False 949.000000 1074 94.510000 1 1254 2 chr7A.!!$F4 1253
3 TraesCS7A01G462400 chr7A 576063966 576065775 1809 True 812.333333 1090 90.418333 1 1927 3 chr7A.!!$R7 1926
4 TraesCS7A01G462400 chr7A 658808508 658809034 526 True 628.000000 628 88.160000 1384 1927 1 chr7A.!!$R3 543
5 TraesCS7A01G462400 chr7A 575460563 575461701 1138 True 467.000000 555 87.540000 1 1010 2 chr7A.!!$R6 1009
6 TraesCS7A01G462400 chr7A 576232637 576233904 1267 False 386.500000 634 87.921000 1384 2714 2 chr7A.!!$F5 1330
7 TraesCS7A01G462400 chr7A 658783072 658784165 1093 True 343.300000 619 90.564500 1384 2717 2 chr7A.!!$R8 1333
8 TraesCS7A01G462400 chr7D 570243592 570244898 1306 True 708.000000 1024 85.960500 1 1399 2 chr7D.!!$R4 1398
9 TraesCS7A01G462400 chr7D 569402494 569403775 1281 True 373.500000 621 87.856000 1384 2717 2 chr7D.!!$R3 1333

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1342 1590 1.503818 GGCGAACGACAAGGCAAAGA 61.504 55.0 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2578 3235 1.616994 GGCAACAGGGATTGTAAGGCT 60.617 52.381 0.0 0.0 39.73 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1342 1590 1.503818 GGCGAACGACAAGGCAAAGA 61.504 55.000 0.00 0.00 0.00 2.52
1349 1597 1.149148 GACAAGGCAAAGACGGAGAC 58.851 55.000 0.00 0.00 0.00 3.36
1376 1624 4.078516 GGCGGCGGACTACAAGGT 62.079 66.667 9.78 0.00 0.00 3.50
1381 1629 1.019805 GGCGGACTACAAGGTCAAGC 61.020 60.000 0.00 0.00 39.13 4.01
1416 1664 4.655647 CCTGCTGGTGGTGCTGCT 62.656 66.667 0.00 0.00 0.00 4.24
1417 1665 3.362797 CTGCTGGTGGTGCTGCTG 61.363 66.667 0.00 0.00 0.00 4.41
1471 1725 1.048601 GGGGTATGCGATCAAGGAGA 58.951 55.000 0.00 0.00 0.00 3.71
1637 1894 2.262915 CCTCGCCGACTTCAAGCT 59.737 61.111 0.00 0.00 0.00 3.74
1644 1901 1.801913 CGACTTCAAGCTCGACGGG 60.802 63.158 4.03 0.00 31.24 5.28
1645 1902 2.048127 ACTTCAAGCTCGACGGGC 60.048 61.111 13.00 13.00 0.00 6.13
1672 1929 2.255430 GTCCAGGTCGACGTCTTCT 58.745 57.895 14.70 5.22 0.00 2.85
1716 1973 2.758089 CCCCGACGACCAGTACGAG 61.758 68.421 0.00 0.00 34.70 4.18
1756 2013 4.416620 CGACGAAGAAGCTTGATCTACTT 58.583 43.478 2.10 0.00 0.00 2.24
1760 2017 5.126384 ACGAAGAAGCTTGATCTACTTAGCT 59.874 40.000 2.10 0.00 45.35 3.32
1761 2018 5.458452 CGAAGAAGCTTGATCTACTTAGCTG 59.542 44.000 2.10 0.00 42.79 4.24
1762 2019 6.537453 AAGAAGCTTGATCTACTTAGCTGA 57.463 37.500 2.10 0.00 42.79 4.26
1763 2020 6.147864 AGAAGCTTGATCTACTTAGCTGAG 57.852 41.667 2.10 3.53 42.79 3.35
1764 2021 4.320608 AGCTTGATCTACTTAGCTGAGC 57.679 45.455 5.23 0.00 42.07 4.26
1765 2022 3.703556 AGCTTGATCTACTTAGCTGAGCA 59.296 43.478 7.39 0.00 42.07 4.26
1766 2023 4.161189 AGCTTGATCTACTTAGCTGAGCAA 59.839 41.667 7.39 3.52 42.07 3.91
1768 2025 5.921962 TTGATCTACTTAGCTGAGCAAGA 57.078 39.130 18.70 9.29 32.29 3.02
1777 2034 7.214467 ACTTAGCTGAGCAAGATCTATCTAC 57.786 40.000 18.70 0.00 35.76 2.59
1823 2096 5.688807 CCATGGATTAGAGTGTGATTCCTT 58.311 41.667 5.56 0.00 0.00 3.36
1826 2099 7.202038 CCATGGATTAGAGTGTGATTCCTTCTA 60.202 40.741 5.56 0.00 0.00 2.10
1828 2101 6.897966 TGGATTAGAGTGTGATTCCTTCTAGT 59.102 38.462 0.00 0.00 0.00 2.57
1847 2120 7.569639 TCTAGTGATCTACTGCGTCTTAAAT 57.430 36.000 7.74 0.00 40.65 1.40
1854 2131 9.378551 TGATCTACTGCGTCTTAAATTTATGTT 57.621 29.630 10.04 0.00 0.00 2.71
1884 2167 8.794335 AGTGATGATCTTGTATCGTAGCTATA 57.206 34.615 0.00 0.00 0.00 1.31
1886 2169 9.444534 GTGATGATCTTGTATCGTAGCTATATG 57.555 37.037 0.00 0.00 0.00 1.78
1887 2170 9.178758 TGATGATCTTGTATCGTAGCTATATGT 57.821 33.333 0.00 0.00 0.00 2.29
1974 2284 8.675705 TCTCTGTTATGTTGTTCTTCAAATCA 57.324 30.769 0.00 0.00 37.81 2.57
1975 2285 8.777413 TCTCTGTTATGTTGTTCTTCAAATCAG 58.223 33.333 0.00 0.00 37.81 2.90
1976 2286 7.362662 TCTGTTATGTTGTTCTTCAAATCAGC 58.637 34.615 0.00 0.00 37.81 4.26
1977 2287 6.142139 TGTTATGTTGTTCTTCAAATCAGCG 58.858 36.000 0.00 0.00 37.81 5.18
1978 2288 6.017523 TGTTATGTTGTTCTTCAAATCAGCGA 60.018 34.615 0.00 0.00 37.81 4.93
1979 2289 5.633830 ATGTTGTTCTTCAAATCAGCGAT 57.366 34.783 0.00 0.00 37.81 4.58
1980 2290 5.034554 TGTTGTTCTTCAAATCAGCGATC 57.965 39.130 0.00 0.00 37.81 3.69
1981 2291 4.514816 TGTTGTTCTTCAAATCAGCGATCA 59.485 37.500 0.00 0.00 37.81 2.92
1985 2295 5.163824 TGTTCTTCAAATCAGCGATCACATC 60.164 40.000 0.00 0.00 0.00 3.06
1999 2309 5.149054 GATCACATCGGTCACAAATCTTC 57.851 43.478 0.00 0.00 0.00 2.87
2001 2311 4.578871 TCACATCGGTCACAAATCTTCAT 58.421 39.130 0.00 0.00 0.00 2.57
2007 2317 3.620488 GGTCACAAATCTTCATAGGGCA 58.380 45.455 0.00 0.00 0.00 5.36
2008 2318 4.016444 GGTCACAAATCTTCATAGGGCAA 58.984 43.478 0.00 0.00 0.00 4.52
2009 2319 4.462483 GGTCACAAATCTTCATAGGGCAAA 59.538 41.667 0.00 0.00 0.00 3.68
2010 2320 5.047377 GGTCACAAATCTTCATAGGGCAAAA 60.047 40.000 0.00 0.00 0.00 2.44
2012 2322 7.099120 GTCACAAATCTTCATAGGGCAAAATT 58.901 34.615 0.00 0.00 0.00 1.82
2014 2324 7.039152 TCACAAATCTTCATAGGGCAAAATTGA 60.039 33.333 0.00 0.00 0.00 2.57
2016 2326 7.983484 ACAAATCTTCATAGGGCAAAATTGATC 59.017 33.333 0.00 0.00 0.00 2.92
2017 2327 6.661304 ATCTTCATAGGGCAAAATTGATCC 57.339 37.500 0.00 0.00 0.00 3.36
2018 2328 4.580167 TCTTCATAGGGCAAAATTGATCCG 59.420 41.667 0.00 0.00 0.00 4.18
2019 2329 2.622942 TCATAGGGCAAAATTGATCCGC 59.377 45.455 0.00 0.00 0.00 5.54
2020 2330 2.136298 TAGGGCAAAATTGATCCGCA 57.864 45.000 0.00 0.00 0.00 5.69
2034 2344 6.662414 TTGATCCGCAATTACTTGTTCTAG 57.338 37.500 0.00 0.00 34.69 2.43
2035 2345 5.972935 TGATCCGCAATTACTTGTTCTAGA 58.027 37.500 0.00 0.00 34.69 2.43
2036 2346 6.582636 TGATCCGCAATTACTTGTTCTAGAT 58.417 36.000 0.00 0.00 34.69 1.98
2037 2347 6.479990 TGATCCGCAATTACTTGTTCTAGATG 59.520 38.462 0.00 0.00 34.69 2.90
2038 2348 5.730550 TCCGCAATTACTTGTTCTAGATGT 58.269 37.500 0.00 0.00 34.69 3.06
2040 2350 7.497595 TCCGCAATTACTTGTTCTAGATGTAT 58.502 34.615 0.00 0.00 34.69 2.29
2041 2351 7.985184 TCCGCAATTACTTGTTCTAGATGTATT 59.015 33.333 0.00 0.00 34.69 1.89
2043 2353 9.638300 CGCAATTACTTGTTCTAGATGTATTTC 57.362 33.333 0.00 0.00 34.69 2.17
2049 2359 8.798859 ACTTGTTCTAGATGTATTTCAATGCT 57.201 30.769 0.00 0.00 0.00 3.79
2050 2360 9.890629 ACTTGTTCTAGATGTATTTCAATGCTA 57.109 29.630 0.00 0.00 0.00 3.49
2060 2370 9.440773 GATGTATTTCAATGCTAGATACATCCA 57.559 33.333 18.76 0.00 45.75 3.41
2061 2371 9.970553 ATGTATTTCAATGCTAGATACATCCAT 57.029 29.630 0.00 0.00 38.75 3.41
2065 2375 8.750515 TTTCAATGCTAGATACATCCATTTGA 57.249 30.769 0.00 0.00 0.00 2.69
2066 2376 7.974482 TCAATGCTAGATACATCCATTTGAG 57.026 36.000 0.00 0.00 0.00 3.02
2067 2377 6.429078 TCAATGCTAGATACATCCATTTGAGC 59.571 38.462 0.00 0.00 0.00 4.26
2068 2378 4.309933 TGCTAGATACATCCATTTGAGCG 58.690 43.478 0.00 0.00 0.00 5.03
2069 2379 4.039124 TGCTAGATACATCCATTTGAGCGA 59.961 41.667 0.00 0.00 0.00 4.93
2070 2380 5.174395 GCTAGATACATCCATTTGAGCGAT 58.826 41.667 0.00 0.00 0.00 4.58
2071 2381 6.071391 TGCTAGATACATCCATTTGAGCGATA 60.071 38.462 0.00 0.00 0.00 2.92
2072 2382 6.813649 GCTAGATACATCCATTTGAGCGATAA 59.186 38.462 0.00 0.00 0.00 1.75
2073 2383 7.009999 GCTAGATACATCCATTTGAGCGATAAG 59.990 40.741 0.00 0.00 0.00 1.73
2074 2384 6.763355 AGATACATCCATTTGAGCGATAAGT 58.237 36.000 0.00 0.00 0.00 2.24
2075 2385 7.896811 AGATACATCCATTTGAGCGATAAGTA 58.103 34.615 0.00 0.00 0.00 2.24
2076 2386 8.367911 AGATACATCCATTTGAGCGATAAGTAA 58.632 33.333 0.00 0.00 0.00 2.24
2077 2387 9.155975 GATACATCCATTTGAGCGATAAGTAAT 57.844 33.333 0.00 0.00 0.00 1.89
2078 2388 7.807977 ACATCCATTTGAGCGATAAGTAATT 57.192 32.000 0.00 0.00 0.00 1.40
2079 2389 7.865707 ACATCCATTTGAGCGATAAGTAATTC 58.134 34.615 0.00 0.00 0.00 2.17
2080 2390 6.861065 TCCATTTGAGCGATAAGTAATTCC 57.139 37.500 0.00 0.00 0.00 3.01
2081 2391 5.465390 TCCATTTGAGCGATAAGTAATTCCG 59.535 40.000 0.00 0.00 0.00 4.30
2082 2392 5.465390 CCATTTGAGCGATAAGTAATTCCGA 59.535 40.000 2.50 0.00 0.00 4.55
2083 2393 6.346919 CCATTTGAGCGATAAGTAATTCCGAG 60.347 42.308 2.50 0.00 0.00 4.63
2084 2394 4.913335 TGAGCGATAAGTAATTCCGAGT 57.087 40.909 2.50 0.00 0.00 4.18
2085 2395 4.607955 TGAGCGATAAGTAATTCCGAGTG 58.392 43.478 2.50 0.00 0.00 3.51
2086 2396 3.978687 AGCGATAAGTAATTCCGAGTGG 58.021 45.455 2.50 0.00 0.00 4.00
2087 2397 3.635373 AGCGATAAGTAATTCCGAGTGGA 59.365 43.478 2.50 0.00 44.61 4.02
2103 2413 4.273318 GAGTGGAGGAAATACTTGGCAAT 58.727 43.478 0.00 0.00 0.00 3.56
2106 2416 5.044846 AGTGGAGGAAATACTTGGCAATAGT 60.045 40.000 0.00 0.00 0.00 2.12
2107 2417 6.157994 AGTGGAGGAAATACTTGGCAATAGTA 59.842 38.462 0.00 0.14 33.00 1.82
2112 2422 9.209175 GAGGAAATACTTGGCAATAGTAGTATG 57.791 37.037 9.01 0.00 34.84 2.39
2136 2460 6.423905 TGTGTTGACTTTCTACTAGTTCATGC 59.576 38.462 0.00 0.00 0.00 4.06
2140 2464 6.530120 TGACTTTCTACTAGTTCATGCCAAA 58.470 36.000 0.00 0.00 0.00 3.28
2143 2467 6.313905 ACTTTCTACTAGTTCATGCCAAATCG 59.686 38.462 0.00 0.00 0.00 3.34
2156 2480 4.508662 TGCCAAATCGGAAACTTTTTGTT 58.491 34.783 1.68 0.00 36.27 2.83
2172 2555 9.965824 AACTTTTTGTTGGTCTAAGATATGTTG 57.034 29.630 0.00 0.00 37.52 3.33
2273 2709 5.585445 AGAAGCAGATGAAGCTCAATGTTAG 59.415 40.000 0.00 0.00 42.53 2.34
2300 2740 2.755650 GGTGCGATTACCTCCACTATG 58.244 52.381 0.00 0.00 37.74 2.23
2317 2924 6.878923 TCCACTATGACAAATTAGTCCACTTG 59.121 38.462 0.00 0.00 37.73 3.16
2341 2948 6.149973 TGTGTTTTCTCATTCATGGCTCTAAG 59.850 38.462 0.00 0.00 0.00 2.18
2348 2955 2.871182 TCATGGCTCTAAGTACGCAG 57.129 50.000 0.00 0.00 0.00 5.18
2387 2997 2.733552 CGTTGTCTTGTCATGTGGAGAG 59.266 50.000 0.00 0.00 0.00 3.20
2431 3045 1.986698 ACAAAAGCGAATGCATGCTC 58.013 45.000 20.33 8.12 46.23 4.26
2433 3047 1.917955 CAAAAGCGAATGCATGCTCTG 59.082 47.619 20.33 8.74 46.23 3.35
2530 3187 3.290948 TTGTTGCTACAGGGTTTGTCT 57.709 42.857 0.37 0.00 41.29 3.41
2535 3192 4.267349 TGCTACAGGGTTTGTCTTACTC 57.733 45.455 0.00 0.00 41.29 2.59
2538 3195 4.691216 GCTACAGGGTTTGTCTTACTCTTG 59.309 45.833 0.00 0.00 41.29 3.02
2544 3201 6.202954 CAGGGTTTGTCTTACTCTTGTACTTG 59.797 42.308 0.00 0.00 0.00 3.16
2557 3214 6.101650 TCTTGTACTTGATCGCCATGATAT 57.898 37.500 0.00 0.00 37.47 1.63
2558 3215 7.039714 ACTCTTGTACTTGATCGCCATGATATA 60.040 37.037 0.00 0.00 37.47 0.86
2559 3216 7.840931 TCTTGTACTTGATCGCCATGATATAT 58.159 34.615 0.00 0.00 37.47 0.86
2560 3217 8.966868 TCTTGTACTTGATCGCCATGATATATA 58.033 33.333 0.00 0.00 37.47 0.86
2591 3256 2.109425 AACACGAGCCTTACAATCCC 57.891 50.000 0.00 0.00 0.00 3.85
2608 3273 3.350219 TCCCTGTTGCCTTTCTATGAC 57.650 47.619 0.00 0.00 0.00 3.06
2625 3290 4.598036 ATGACCCCAGAAGTGAAATCAT 57.402 40.909 0.00 0.00 0.00 2.45
2636 3301 9.565213 CCAGAAGTGAAATCATTCATTCTTTAC 57.435 33.333 10.65 0.00 46.67 2.01
2648 3313 9.983024 TCATTCATTCTTTACCCTTTTACCATA 57.017 29.630 0.00 0.00 0.00 2.74
2654 3319 7.989416 TCTTTACCCTTTTACCATACTTGTG 57.011 36.000 0.00 0.00 0.00 3.33
2670 3335 3.119173 ACTTGTGTGGTGTCCATTGTTTG 60.119 43.478 0.00 0.00 35.28 2.93
2671 3336 2.451490 TGTGTGGTGTCCATTGTTTGT 58.549 42.857 0.00 0.00 35.28 2.83
2714 3379 4.214119 TGTCAATCTTTGTAGTTGCTGCTC 59.786 41.667 0.00 0.00 0.00 4.26
2717 3382 6.314896 GTCAATCTTTGTAGTTGCTGCTCTAT 59.685 38.462 0.00 0.00 0.00 1.98
2718 3383 6.881065 TCAATCTTTGTAGTTGCTGCTCTATT 59.119 34.615 0.00 0.00 0.00 1.73
2719 3384 7.391554 TCAATCTTTGTAGTTGCTGCTCTATTT 59.608 33.333 0.00 0.00 0.00 1.40
2720 3385 6.727824 TCTTTGTAGTTGCTGCTCTATTTC 57.272 37.500 0.00 0.00 0.00 2.17
2721 3386 6.467677 TCTTTGTAGTTGCTGCTCTATTTCT 58.532 36.000 0.00 0.00 0.00 2.52
2722 3387 6.369890 TCTTTGTAGTTGCTGCTCTATTTCTG 59.630 38.462 0.00 0.00 0.00 3.02
2723 3388 5.152623 TGTAGTTGCTGCTCTATTTCTGT 57.847 39.130 0.00 0.00 0.00 3.41
2724 3389 5.551233 TGTAGTTGCTGCTCTATTTCTGTT 58.449 37.500 0.00 0.00 0.00 3.16
2725 3390 5.409520 TGTAGTTGCTGCTCTATTTCTGTTG 59.590 40.000 0.00 0.00 0.00 3.33
2726 3391 4.392940 AGTTGCTGCTCTATTTCTGTTGT 58.607 39.130 0.00 0.00 0.00 3.32
2727 3392 4.823989 AGTTGCTGCTCTATTTCTGTTGTT 59.176 37.500 0.00 0.00 0.00 2.83
2728 3393 4.754372 TGCTGCTCTATTTCTGTTGTTG 57.246 40.909 0.00 0.00 0.00 3.33
2729 3394 3.058016 TGCTGCTCTATTTCTGTTGTTGC 60.058 43.478 0.00 0.00 0.00 4.17
2730 3395 3.058016 GCTGCTCTATTTCTGTTGTTGCA 60.058 43.478 0.00 0.00 0.00 4.08
2731 3396 4.470462 CTGCTCTATTTCTGTTGTTGCAC 58.530 43.478 0.00 0.00 0.00 4.57
2732 3397 4.136796 TGCTCTATTTCTGTTGTTGCACT 58.863 39.130 0.00 0.00 0.00 4.40
2733 3398 4.580167 TGCTCTATTTCTGTTGTTGCACTT 59.420 37.500 0.00 0.00 0.00 3.16
2734 3399 5.762711 TGCTCTATTTCTGTTGTTGCACTTA 59.237 36.000 0.00 0.00 0.00 2.24
2735 3400 6.430925 TGCTCTATTTCTGTTGTTGCACTTAT 59.569 34.615 0.00 0.00 0.00 1.73
2736 3401 6.744537 GCTCTATTTCTGTTGTTGCACTTATG 59.255 38.462 0.00 0.00 0.00 1.90
2737 3402 7.361201 GCTCTATTTCTGTTGTTGCACTTATGA 60.361 37.037 0.00 0.00 0.00 2.15
2738 3403 8.389779 TCTATTTCTGTTGTTGCACTTATGAA 57.610 30.769 0.00 0.00 0.00 2.57
2739 3404 8.289618 TCTATTTCTGTTGTTGCACTTATGAAC 58.710 33.333 0.00 0.00 0.00 3.18
2740 3405 6.449635 TTTCTGTTGTTGCACTTATGAACT 57.550 33.333 0.00 0.00 0.00 3.01
2741 3406 5.673337 TCTGTTGTTGCACTTATGAACTC 57.327 39.130 0.00 0.00 0.00 3.01
2742 3407 4.515191 TCTGTTGTTGCACTTATGAACTCC 59.485 41.667 0.00 0.00 0.00 3.85
2743 3408 3.249799 TGTTGTTGCACTTATGAACTCCG 59.750 43.478 0.00 0.00 0.00 4.63
2744 3409 2.422597 TGTTGCACTTATGAACTCCGG 58.577 47.619 0.00 0.00 0.00 5.14
2745 3410 2.224426 TGTTGCACTTATGAACTCCGGT 60.224 45.455 0.00 0.00 0.00 5.28
2746 3411 3.007074 TGTTGCACTTATGAACTCCGGTA 59.993 43.478 0.00 0.00 0.00 4.02
2747 3412 3.965379 TGCACTTATGAACTCCGGTAA 57.035 42.857 0.00 0.00 0.00 2.85
2748 3413 4.481368 TGCACTTATGAACTCCGGTAAT 57.519 40.909 0.00 0.00 0.00 1.89
2749 3414 4.839121 TGCACTTATGAACTCCGGTAATT 58.161 39.130 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1326 1574 0.234884 CCGTCTTTGCCTTGTCGTTC 59.765 55.000 0.00 0.00 0.00 3.95
1327 1575 0.179067 TCCGTCTTTGCCTTGTCGTT 60.179 50.000 0.00 0.00 0.00 3.85
1328 1576 0.600255 CTCCGTCTTTGCCTTGTCGT 60.600 55.000 0.00 0.00 0.00 4.34
1338 1586 1.080705 CGCCTTCGTCTCCGTCTTT 60.081 57.895 0.00 0.00 35.01 2.52
1369 1617 1.275291 CTTCTCCGGCTTGACCTTGTA 59.725 52.381 0.00 0.00 35.61 2.41
1376 1624 2.660064 GCCTCCTTCTCCGGCTTGA 61.660 63.158 0.00 0.00 40.62 3.02
1416 1664 2.285368 AACCTCTCGGGGGATGCA 60.285 61.111 0.00 0.00 40.03 3.96
1417 1665 1.910580 TTCAACCTCTCGGGGGATGC 61.911 60.000 0.00 0.00 40.03 3.91
1418 1666 0.179000 CTTCAACCTCTCGGGGGATG 59.821 60.000 0.00 0.00 40.03 3.51
1449 1703 0.319900 CCTTGATCGCATACCCCTCG 60.320 60.000 0.00 0.00 0.00 4.63
1471 1725 2.507471 GGTCCATCTTCACCATCCTCTT 59.493 50.000 0.00 0.00 32.33 2.85
1672 1929 2.334946 CCCTTGGGTCGTCGTCGTA 61.335 63.158 1.33 0.00 38.33 3.43
1716 1973 1.741770 GCTGTCGTGGTGGATGACC 60.742 63.158 0.00 0.00 46.37 4.02
1756 2013 5.886609 AGGTAGATAGATCTTGCTCAGCTA 58.113 41.667 0.00 0.00 38.32 3.32
1760 2017 9.845740 GATAGATAGGTAGATAGATCTTGCTCA 57.154 37.037 0.00 0.00 38.32 4.26
1777 2034 6.039829 TGGCGCACATTAGATAGATAGATAGG 59.960 42.308 10.83 0.00 0.00 2.57
1798 2071 2.602257 TCACACTCTAATCCATGGCG 57.398 50.000 6.96 0.00 0.00 5.69
1847 2120 7.660112 ACAAGATCATCACTTGCAAACATAAA 58.340 30.769 0.00 0.00 45.66 1.40
1854 2131 5.178061 ACGATACAAGATCATCACTTGCAA 58.822 37.500 0.00 0.00 45.66 4.08
1868 2151 8.504815 ACACACTACATATAGCTACGATACAAG 58.495 37.037 0.00 0.00 30.75 3.16
1884 2167 1.944177 AGCCAGAGGACACACTACAT 58.056 50.000 0.00 0.00 0.00 2.29
1886 2169 2.808543 CAAAAGCCAGAGGACACACTAC 59.191 50.000 0.00 0.00 0.00 2.73
1887 2170 2.810400 GCAAAAGCCAGAGGACACACTA 60.810 50.000 0.00 0.00 0.00 2.74
1977 2287 4.631377 TGAAGATTTGTGACCGATGTGATC 59.369 41.667 0.00 0.00 0.00 2.92
1978 2288 4.578871 TGAAGATTTGTGACCGATGTGAT 58.421 39.130 0.00 0.00 0.00 3.06
1979 2289 4.001618 TGAAGATTTGTGACCGATGTGA 57.998 40.909 0.00 0.00 0.00 3.58
1980 2290 4.952262 ATGAAGATTTGTGACCGATGTG 57.048 40.909 0.00 0.00 0.00 3.21
1981 2291 5.118990 CCTATGAAGATTTGTGACCGATGT 58.881 41.667 0.00 0.00 0.00 3.06
1985 2295 2.614057 GCCCTATGAAGATTTGTGACCG 59.386 50.000 0.00 0.00 0.00 4.79
1999 2309 2.361757 TGCGGATCAATTTTGCCCTATG 59.638 45.455 0.00 0.00 0.00 2.23
2001 2311 2.136298 TGCGGATCAATTTTGCCCTA 57.864 45.000 0.00 0.00 0.00 3.53
2010 2320 7.047891 TCTAGAACAAGTAATTGCGGATCAAT 58.952 34.615 2.17 0.00 46.82 2.57
2012 2322 5.972935 TCTAGAACAAGTAATTGCGGATCA 58.027 37.500 2.17 0.00 0.00 2.92
2014 2324 6.349300 ACATCTAGAACAAGTAATTGCGGAT 58.651 36.000 2.17 0.00 0.00 4.18
2016 2326 7.715265 ATACATCTAGAACAAGTAATTGCGG 57.285 36.000 2.17 0.00 0.00 5.69
2017 2327 9.638300 GAAATACATCTAGAACAAGTAATTGCG 57.362 33.333 2.17 0.00 0.00 4.85
2023 2333 9.890629 AGCATTGAAATACATCTAGAACAAGTA 57.109 29.630 0.00 0.00 0.00 2.24
2035 2345 9.970553 ATGGATGTATCTAGCATTGAAATACAT 57.029 29.630 9.54 9.54 42.96 2.29
2036 2346 9.797642 AATGGATGTATCTAGCATTGAAATACA 57.202 29.630 1.90 1.90 37.26 2.29
2040 2350 8.750515 TCAAATGGATGTATCTAGCATTGAAA 57.249 30.769 0.00 0.00 0.00 2.69
2041 2351 7.040892 GCTCAAATGGATGTATCTAGCATTGAA 60.041 37.037 0.00 0.00 0.00 2.69
2043 2353 6.609533 GCTCAAATGGATGTATCTAGCATTG 58.390 40.000 0.00 0.00 0.00 2.82
2045 2355 4.934001 CGCTCAAATGGATGTATCTAGCAT 59.066 41.667 0.00 0.00 0.00 3.79
2046 2356 4.039124 TCGCTCAAATGGATGTATCTAGCA 59.961 41.667 0.00 0.00 0.00 3.49
2047 2357 4.560128 TCGCTCAAATGGATGTATCTAGC 58.440 43.478 0.00 0.00 0.00 3.42
2048 2358 8.031864 ACTTATCGCTCAAATGGATGTATCTAG 58.968 37.037 0.00 0.00 0.00 2.43
2049 2359 7.896811 ACTTATCGCTCAAATGGATGTATCTA 58.103 34.615 0.00 0.00 0.00 1.98
2050 2360 6.763355 ACTTATCGCTCAAATGGATGTATCT 58.237 36.000 0.00 0.00 0.00 1.98
2051 2361 8.534333 TTACTTATCGCTCAAATGGATGTATC 57.466 34.615 0.00 0.00 0.00 2.24
2053 2363 8.902540 AATTACTTATCGCTCAAATGGATGTA 57.097 30.769 0.00 0.00 0.00 2.29
2054 2364 7.041098 GGAATTACTTATCGCTCAAATGGATGT 60.041 37.037 0.00 0.00 0.00 3.06
2055 2365 7.301054 GGAATTACTTATCGCTCAAATGGATG 58.699 38.462 0.00 0.00 0.00 3.51
2056 2366 6.147821 CGGAATTACTTATCGCTCAAATGGAT 59.852 38.462 0.00 0.00 0.00 3.41
2057 2367 5.465390 CGGAATTACTTATCGCTCAAATGGA 59.535 40.000 0.00 0.00 0.00 3.41
2059 2369 6.201044 ACTCGGAATTACTTATCGCTCAAATG 59.799 38.462 0.00 0.00 0.00 2.32
2060 2370 6.201044 CACTCGGAATTACTTATCGCTCAAAT 59.799 38.462 0.00 0.00 0.00 2.32
2061 2371 5.518847 CACTCGGAATTACTTATCGCTCAAA 59.481 40.000 0.00 0.00 0.00 2.69
2063 2373 4.499188 CCACTCGGAATTACTTATCGCTCA 60.499 45.833 0.00 0.00 0.00 4.26
2064 2374 3.982058 CCACTCGGAATTACTTATCGCTC 59.018 47.826 0.00 0.00 0.00 5.03
2065 2375 3.635373 TCCACTCGGAATTACTTATCGCT 59.365 43.478 0.00 0.00 38.83 4.93
2066 2376 3.973657 TCCACTCGGAATTACTTATCGC 58.026 45.455 0.00 0.00 38.83 4.58
2067 2377 4.277672 TCCTCCACTCGGAATTACTTATCG 59.722 45.833 0.00 0.00 42.21 2.92
2068 2378 5.786264 TCCTCCACTCGGAATTACTTATC 57.214 43.478 0.00 0.00 42.21 1.75
2069 2379 6.555463 TTTCCTCCACTCGGAATTACTTAT 57.445 37.500 0.00 0.00 42.21 1.73
2070 2380 6.555463 ATTTCCTCCACTCGGAATTACTTA 57.445 37.500 0.00 0.00 42.21 2.24
2071 2381 4.903045 TTTCCTCCACTCGGAATTACTT 57.097 40.909 0.00 0.00 42.21 2.24
2072 2382 5.661759 AGTATTTCCTCCACTCGGAATTACT 59.338 40.000 15.32 15.32 44.60 2.24
2073 2383 5.915175 AGTATTTCCTCCACTCGGAATTAC 58.085 41.667 12.47 12.47 42.21 1.89
2074 2384 6.346096 CAAGTATTTCCTCCACTCGGAATTA 58.654 40.000 0.00 0.00 42.21 1.40
2075 2385 5.186198 CAAGTATTTCCTCCACTCGGAATT 58.814 41.667 0.00 0.00 42.21 2.17
2076 2386 4.384208 CCAAGTATTTCCTCCACTCGGAAT 60.384 45.833 0.00 0.00 42.21 3.01
2077 2387 3.055385 CCAAGTATTTCCTCCACTCGGAA 60.055 47.826 0.00 0.00 42.21 4.30
2078 2388 2.500098 CCAAGTATTTCCTCCACTCGGA 59.500 50.000 0.00 0.00 39.79 4.55
2079 2389 2.906354 CCAAGTATTTCCTCCACTCGG 58.094 52.381 0.00 0.00 0.00 4.63
2080 2390 2.280628 GCCAAGTATTTCCTCCACTCG 58.719 52.381 0.00 0.00 0.00 4.18
2081 2391 3.350219 TGCCAAGTATTTCCTCCACTC 57.650 47.619 0.00 0.00 0.00 3.51
2082 2392 3.806949 TTGCCAAGTATTTCCTCCACT 57.193 42.857 0.00 0.00 0.00 4.00
2083 2393 5.193679 ACTATTGCCAAGTATTTCCTCCAC 58.806 41.667 0.00 0.00 0.00 4.02
2084 2394 5.450818 ACTATTGCCAAGTATTTCCTCCA 57.549 39.130 0.00 0.00 0.00 3.86
2085 2395 6.592870 ACTACTATTGCCAAGTATTTCCTCC 58.407 40.000 0.00 0.00 0.00 4.30
2086 2396 9.209175 CATACTACTATTGCCAAGTATTTCCTC 57.791 37.037 0.00 0.00 33.86 3.71
2087 2397 8.714906 ACATACTACTATTGCCAAGTATTTCCT 58.285 33.333 0.00 0.00 33.86 3.36
2088 2398 8.774586 CACATACTACTATTGCCAAGTATTTCC 58.225 37.037 0.00 0.00 33.86 3.13
2089 2399 9.326413 ACACATACTACTATTGCCAAGTATTTC 57.674 33.333 0.00 0.00 33.86 2.17
2090 2400 9.681062 AACACATACTACTATTGCCAAGTATTT 57.319 29.630 0.00 0.00 33.86 1.40
2091 2401 9.109393 CAACACATACTACTATTGCCAAGTATT 57.891 33.333 0.00 0.00 33.86 1.89
2092 2402 8.482943 TCAACACATACTACTATTGCCAAGTAT 58.517 33.333 0.00 0.00 35.95 2.12
2093 2403 7.762615 GTCAACACATACTACTATTGCCAAGTA 59.237 37.037 0.00 0.00 0.00 2.24
2094 2404 6.594159 GTCAACACATACTACTATTGCCAAGT 59.406 38.462 0.00 0.00 0.00 3.16
2095 2405 6.818644 AGTCAACACATACTACTATTGCCAAG 59.181 38.462 0.00 0.00 0.00 3.61
2107 2417 8.857098 TGAACTAGTAGAAAGTCAACACATACT 58.143 33.333 3.59 0.00 0.00 2.12
2112 2422 6.128526 GGCATGAACTAGTAGAAAGTCAACAC 60.129 42.308 3.59 0.00 0.00 3.32
2127 2451 4.331968 AGTTTCCGATTTGGCATGAACTA 58.668 39.130 0.00 0.00 37.80 2.24
2136 2460 4.873259 ACCAACAAAAAGTTTCCGATTTGG 59.127 37.500 10.56 10.56 38.74 3.28
2140 2464 6.544564 TCTTAGACCAACAAAAAGTTTCCGAT 59.455 34.615 0.00 0.00 38.74 4.18
2143 2467 9.626045 CATATCTTAGACCAACAAAAAGTTTCC 57.374 33.333 0.00 0.00 38.74 3.13
2156 2480 8.918202 ACAAAAAGTCAACATATCTTAGACCA 57.082 30.769 0.00 0.00 0.00 4.02
2192 2614 9.719355 TGTTGTTGCAGTAGAGAAATTATCTTA 57.281 29.630 0.00 0.00 38.96 2.10
2193 2615 8.621532 TGTTGTTGCAGTAGAGAAATTATCTT 57.378 30.769 0.00 0.00 38.96 2.40
2194 2616 7.335422 CCTGTTGTTGCAGTAGAGAAATTATCT 59.665 37.037 0.00 0.00 36.54 1.98
2199 2621 4.973168 TCCTGTTGTTGCAGTAGAGAAAT 58.027 39.130 0.00 0.00 34.84 2.17
2200 2622 4.380531 CTCCTGTTGTTGCAGTAGAGAAA 58.619 43.478 0.00 0.00 34.84 2.52
2227 2656 7.277174 TCTGAGCTATAATTCAGATTGTCGA 57.723 36.000 10.35 0.00 43.51 4.20
2229 2658 7.795859 GCTTCTGAGCTATAATTCAGATTGTC 58.204 38.462 13.65 4.14 46.54 3.18
2284 2720 7.926555 ACTAATTTGTCATAGTGGAGGTAATCG 59.073 37.037 0.00 0.00 31.35 3.34
2300 2740 7.480810 AGAAAACACAAGTGGACTAATTTGTC 58.519 34.615 11.07 11.07 31.84 3.18
2317 2924 6.150140 ACTTAGAGCCATGAATGAGAAAACAC 59.850 38.462 0.00 0.00 0.00 3.32
2341 2948 8.255143 CGTGTGTATTTACTATTTACTGCGTAC 58.745 37.037 0.00 0.00 0.00 3.67
2361 2968 2.351418 CACATGACAAGACAACGTGTGT 59.649 45.455 0.00 0.00 45.74 3.72
2411 3025 2.029649 AGAGCATGCATTCGCTTTTGTT 60.030 40.909 21.98 0.00 38.99 2.83
2431 3045 4.564041 ACTATGACTTGAACTCTGTGCAG 58.436 43.478 0.00 0.00 0.00 4.41
2433 3047 5.931441 AAACTATGACTTGAACTCTGTGC 57.069 39.130 0.00 0.00 0.00 4.57
2434 3048 7.919690 TGAAAAACTATGACTTGAACTCTGTG 58.080 34.615 0.00 0.00 0.00 3.66
2436 3050 8.562892 ACATGAAAAACTATGACTTGAACTCTG 58.437 33.333 0.00 0.00 0.00 3.35
2437 3051 8.682936 ACATGAAAAACTATGACTTGAACTCT 57.317 30.769 0.00 0.00 0.00 3.24
2438 3052 9.736023 AAACATGAAAAACTATGACTTGAACTC 57.264 29.630 0.00 0.00 0.00 3.01
2445 3059 9.912634 CCAACATAAACATGAAAAACTATGACT 57.087 29.630 0.00 0.00 0.00 3.41
2530 3187 4.794278 TGGCGATCAAGTACAAGAGTAA 57.206 40.909 0.00 0.00 30.67 2.24
2535 3192 9.025020 GTATATATCATGGCGATCAAGTACAAG 57.975 37.037 0.00 0.00 35.39 3.16
2544 3201 8.138074 TGAGCTTAAGTATATATCATGGCGATC 58.862 37.037 4.02 0.00 35.39 3.69
2576 3233 2.009774 CAACAGGGATTGTAAGGCTCG 58.990 52.381 0.00 0.00 39.73 5.03
2578 3235 1.616994 GGCAACAGGGATTGTAAGGCT 60.617 52.381 0.00 0.00 39.73 4.58
2591 3256 2.290896 TGGGGTCATAGAAAGGCAACAG 60.291 50.000 0.00 0.00 41.41 3.16
2608 3273 5.655532 AGAATGAATGATTTCACTTCTGGGG 59.344 40.000 10.10 0.00 44.36 4.96
2625 3290 9.816787 AAGTATGGTAAAAGGGTAAAGAATGAA 57.183 29.630 0.00 0.00 0.00 2.57
2644 3309 2.559698 TGGACACCACACAAGTATGG 57.440 50.000 0.00 0.00 42.13 2.74
2648 3313 2.435372 ACAATGGACACCACACAAGT 57.565 45.000 0.00 0.00 35.80 3.16
2654 3319 3.443976 GACAACAAACAATGGACACCAC 58.556 45.455 0.00 0.00 35.80 4.16
2670 3335 8.556213 TGACACCTATAAACTTTATGGACAAC 57.444 34.615 6.48 0.00 0.00 3.32
2671 3336 9.747898 ATTGACACCTATAAACTTTATGGACAA 57.252 29.630 6.48 11.61 0.00 3.18
2701 3366 5.152623 ACAGAAATAGAGCAGCAACTACA 57.847 39.130 0.00 0.00 0.00 2.74
2714 3379 8.292448 AGTTCATAAGTGCAACAACAGAAATAG 58.708 33.333 0.00 0.00 41.43 1.73
2717 3382 6.449635 AGTTCATAAGTGCAACAACAGAAA 57.550 33.333 0.00 0.00 41.43 2.52
2718 3383 5.008613 GGAGTTCATAAGTGCAACAACAGAA 59.991 40.000 0.00 0.00 41.43 3.02
2719 3384 4.515191 GGAGTTCATAAGTGCAACAACAGA 59.485 41.667 0.00 0.00 41.43 3.41
2720 3385 4.611355 CGGAGTTCATAAGTGCAACAACAG 60.611 45.833 0.00 0.00 41.43 3.16
2721 3386 3.249799 CGGAGTTCATAAGTGCAACAACA 59.750 43.478 0.00 0.00 41.43 3.33
2722 3387 3.364964 CCGGAGTTCATAAGTGCAACAAC 60.365 47.826 0.00 0.00 41.43 3.32
2723 3388 2.811431 CCGGAGTTCATAAGTGCAACAA 59.189 45.455 0.00 0.00 41.43 2.83
2724 3389 2.224426 ACCGGAGTTCATAAGTGCAACA 60.224 45.455 9.46 0.00 41.43 3.33
2725 3390 2.423577 ACCGGAGTTCATAAGTGCAAC 58.576 47.619 9.46 0.00 0.00 4.17
2726 3391 2.851263 ACCGGAGTTCATAAGTGCAA 57.149 45.000 9.46 0.00 0.00 4.08
2727 3392 3.965379 TTACCGGAGTTCATAAGTGCA 57.035 42.857 9.46 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.