Multiple sequence alignment - TraesCS7A01G461700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G461700 chr7A 100.000 7109 0 0 1 7109 657722535 657715427 0.000000e+00 13128.0
1 TraesCS7A01G461700 chr7A 90.000 210 16 2 2519 2724 632546463 632546671 4.230000e-67 267.0
2 TraesCS7A01G461700 chr7A 91.667 180 9 2 2314 2493 632546292 632546465 1.980000e-60 244.0
3 TraesCS7A01G461700 chr7B 90.631 4504 233 78 2314 6737 625300382 625295988 0.000000e+00 5805.0
4 TraesCS7A01G461700 chr7B 88.106 2270 117 57 40 2239 625302593 625300407 0.000000e+00 2555.0
5 TraesCS7A01G461700 chr7B 92.778 180 11 2 2314 2493 592343231 592343408 7.070000e-65 259.0
6 TraesCS7A01G461700 chr7B 80.836 287 27 13 6741 7011 625295949 625295675 4.350000e-47 200.0
7 TraesCS7A01G461700 chr7D 91.773 3063 124 57 3760 6744 568951788 568948776 0.000000e+00 4143.0
8 TraesCS7A01G461700 chr7D 89.215 2281 120 52 7 2232 568955482 568953273 0.000000e+00 2734.0
9 TraesCS7A01G461700 chr7D 96.342 1449 47 4 2314 3759 568953274 568951829 0.000000e+00 2377.0
10 TraesCS7A01G461700 chr7D 89.952 418 30 6 2314 2721 548771504 548771919 4.880000e-146 529.0
11 TraesCS7A01G461700 chr7D 80.593 371 42 19 6741 7109 568948743 568948401 7.070000e-65 259.0
12 TraesCS7A01G461700 chr7D 94.059 101 4 2 2224 2323 163058829 163058928 1.240000e-32 152.0
13 TraesCS7A01G461700 chr4A 89.207 1047 79 14 3535 4579 639045662 639046676 0.000000e+00 1277.0
14 TraesCS7A01G461700 chr6D 78.718 390 70 13 2366 2746 91518359 91518744 1.530000e-61 248.0
15 TraesCS7A01G461700 chr6D 78.534 382 70 10 3099 3478 91519119 91519490 2.560000e-59 241.0
16 TraesCS7A01G461700 chr6D 96.809 94 2 1 2224 2316 155146872 155146779 9.550000e-34 156.0
17 TraesCS7A01G461700 chr6A 78.851 383 67 11 3099 3478 109985281 109985652 5.510000e-61 246.0
18 TraesCS7A01G461700 chr6A 94.898 98 4 1 2229 2325 51946466 51946563 1.240000e-32 152.0
19 TraesCS7A01G461700 chr6A 97.143 35 1 0 242 276 109982741 109982775 7.700000e-05 60.2
20 TraesCS7A01G461700 chr6B 78.534 382 70 10 3099 3478 175340079 175340450 2.560000e-59 241.0
21 TraesCS7A01G461700 chr6B 77.949 390 73 13 2366 2746 175339319 175339704 1.540000e-56 231.0
22 TraesCS7A01G461700 chr6B 94.949 99 4 1 2222 2319 478590928 478591026 3.430000e-33 154.0
23 TraesCS7A01G461700 chr6B 97.143 35 1 0 242 276 175337544 175337578 7.700000e-05 60.2
24 TraesCS7A01G461700 chr5B 95.876 97 3 1 2220 2315 670831431 670831527 9.550000e-34 156.0
25 TraesCS7A01G461700 chr5B 80.402 199 39 0 5608 5806 44781737 44781935 1.240000e-32 152.0
26 TraesCS7A01G461700 chr1B 97.802 91 1 1 2227 2316 61251341 61251251 9.550000e-34 156.0
27 TraesCS7A01G461700 chr1B 97.802 91 1 1 2230 2319 297119702 297119612 9.550000e-34 156.0
28 TraesCS7A01G461700 chr5A 80.402 199 39 0 5608 5806 35632169 35632367 1.240000e-32 152.0
29 TraesCS7A01G461700 chr4B 94.845 97 4 1 2227 2322 575913642 575913546 4.440000e-32 150.0
30 TraesCS7A01G461700 chr5D 79.899 199 40 0 5608 5806 44912591 44912789 5.750000e-31 147.0
31 TraesCS7A01G461700 chr1A 91.509 106 6 3 2228 2331 504269174 504269070 7.430000e-30 143.0
32 TraesCS7A01G461700 chr2D 86.869 99 11 2 5708 5805 624367328 624367425 7.540000e-20 110.0
33 TraesCS7A01G461700 chr2B 86.869 99 11 2 5708 5805 766566852 766566949 7.540000e-20 110.0
34 TraesCS7A01G461700 chr2A 86.869 99 11 2 5708 5805 755774288 755774385 7.540000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G461700 chr7A 657715427 657722535 7108 True 13128.000000 13128 100.000000 1 7109 1 chr7A.!!$R1 7108
1 TraesCS7A01G461700 chr7B 625295675 625302593 6918 True 2853.333333 5805 86.524333 40 7011 3 chr7B.!!$R1 6971
2 TraesCS7A01G461700 chr7D 568948401 568955482 7081 True 2378.250000 4143 89.480750 7 7109 4 chr7D.!!$R1 7102
3 TraesCS7A01G461700 chr4A 639045662 639046676 1014 False 1277.000000 1277 89.207000 3535 4579 1 chr4A.!!$F1 1044
4 TraesCS7A01G461700 chr6D 91518359 91519490 1131 False 244.500000 248 78.626000 2366 3478 2 chr6D.!!$F1 1112

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
788 858 0.107361 ATCCCATTCCGTTCCGTTCC 60.107 55.000 0.00 0.00 0.00 3.62 F
1577 1677 0.109365 TTCATTTCGTTGCATGCCCG 60.109 50.000 16.68 17.36 0.00 6.13 F
2746 2867 0.439985 CACATCTTTCGCGGTGAGTG 59.560 55.000 6.13 4.60 33.16 3.51 F
3358 3517 2.033141 TGCAGAGCCAGTCCTTGC 59.967 61.111 0.00 0.00 0.00 4.01 F
3756 3921 0.878416 TCGCCTGTTGTTTACCATGC 59.122 50.000 0.00 0.00 0.00 4.06 F
4264 4471 1.017177 TGGATGCGTCGTTACTTGGC 61.017 55.000 0.00 0.00 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1877 1982 0.944311 TCTGTTCTGACGCCGAAAGC 60.944 55.000 0.00 0.00 38.52 3.51 R
3330 3489 1.134128 TGGCTCTGCACAAACAGAAGA 60.134 47.619 0.00 0.00 45.72 2.87 R
3644 3809 1.336755 GTGAGTTTGGCCAACGAACAT 59.663 47.619 20.35 4.15 44.49 2.71 R
4219 4426 1.684983 GGTTGCATCCAGGGATTCATG 59.315 52.381 9.02 0.00 31.62 3.07 R
4903 5110 2.523168 TGCGTGGTGGACTGAGGA 60.523 61.111 0.00 0.00 0.00 3.71 R
6115 6328 0.101219 GCATTAAGCGAGGGCCTTTG 59.899 55.000 7.89 4.69 41.24 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.796355 CGAGCGGGCATATCGTACG 60.796 63.158 9.53 9.53 0.00 3.67
41 42 0.917259 CGTACATGCAGAGAACGCTC 59.083 55.000 0.00 0.00 41.62 5.03
42 43 0.917259 GTACATGCAGAGAACGCTCG 59.083 55.000 0.00 0.00 45.98 5.03
77 78 0.180406 ACACATATTCCGGGGAGCAC 59.820 55.000 0.00 0.00 0.00 4.40
85 86 3.121030 CGGGGAGCACGAGCAAAG 61.121 66.667 7.77 0.00 45.49 2.77
86 87 3.435186 GGGGAGCACGAGCAAAGC 61.435 66.667 7.77 0.00 45.49 3.51
87 88 2.669569 GGGAGCACGAGCAAAGCA 60.670 61.111 7.77 0.00 45.49 3.91
88 89 2.684843 GGGAGCACGAGCAAAGCAG 61.685 63.158 7.77 0.00 45.49 4.24
89 90 2.684843 GGAGCACGAGCAAAGCAGG 61.685 63.158 7.77 0.00 45.49 4.85
90 91 1.669115 GAGCACGAGCAAAGCAGGA 60.669 57.895 7.77 0.00 45.49 3.86
91 92 1.633852 GAGCACGAGCAAAGCAGGAG 61.634 60.000 7.77 0.00 45.49 3.69
92 93 2.866028 CACGAGCAAAGCAGGAGC 59.134 61.111 0.00 0.00 42.56 4.70
109 110 2.584418 CGCACGCCTCCTCATCAG 60.584 66.667 0.00 0.00 0.00 2.90
131 137 4.580580 AGCACTGCTATAAAAATACCTGCC 59.419 41.667 0.21 0.00 36.99 4.85
177 204 3.319755 TCCAAGTCGCTTAGTAAAACGG 58.680 45.455 5.44 0.00 0.00 4.44
180 207 2.589014 AGTCGCTTAGTAAAACGGACG 58.411 47.619 5.44 0.00 0.00 4.79
181 208 1.650645 GTCGCTTAGTAAAACGGACGG 59.349 52.381 0.00 0.00 0.00 4.79
182 209 1.539388 TCGCTTAGTAAAACGGACGGA 59.461 47.619 0.00 0.00 0.00 4.69
183 210 2.030363 TCGCTTAGTAAAACGGACGGAA 60.030 45.455 0.00 0.00 0.00 4.30
214 250 4.560035 CGTACTGTACACGATTTTACAGGG 59.440 45.833 17.35 0.02 46.45 4.45
220 256 2.236395 ACACGATTTTACAGGGGAGAGG 59.764 50.000 0.00 0.00 0.00 3.69
228 264 4.761304 AGGGGAGAGGGAGGGGGA 62.761 72.222 0.00 0.00 0.00 4.81
317 353 3.036783 GAGCCAGAGCAAGCAAGCG 62.037 63.158 0.00 0.00 43.56 4.68
330 366 3.080121 AAGCGGCCAGAGGAGGAG 61.080 66.667 2.24 0.00 0.00 3.69
336 372 2.837291 CCAGAGGAGGAGGGAGCG 60.837 72.222 0.00 0.00 0.00 5.03
357 393 1.878775 CAAGCCGAGCCCAAGAAAG 59.121 57.895 0.00 0.00 0.00 2.62
358 394 1.973812 AAGCCGAGCCCAAGAAAGC 60.974 57.895 0.00 0.00 0.00 3.51
359 395 3.804193 GCCGAGCCCAAGAAAGCG 61.804 66.667 0.00 0.00 0.00 4.68
384 421 4.112341 GCCGAGGCAAGCAAGCAG 62.112 66.667 9.58 0.00 41.49 4.24
430 475 4.994471 CAGCCAGCTGTGACCGCA 62.994 66.667 13.81 0.00 39.10 5.69
431 476 4.694233 AGCCAGCTGTGACCGCAG 62.694 66.667 13.81 6.23 39.37 5.18
437 482 4.056125 CTGTGACCGCAGCTCCGA 62.056 66.667 0.00 0.00 0.00 4.55
438 483 3.573772 CTGTGACCGCAGCTCCGAA 62.574 63.158 0.00 0.00 0.00 4.30
439 484 2.811317 GTGACCGCAGCTCCGAAG 60.811 66.667 0.00 0.00 0.00 3.79
462 507 4.760047 GAGCAAAGGAGGCGGCGA 62.760 66.667 12.98 0.00 36.08 5.54
587 643 1.357334 GCTCCTCGGATCGACTGTC 59.643 63.158 0.00 0.00 0.00 3.51
659 727 1.376812 GATCGGGGTTTTCTGCCGT 60.377 57.895 0.00 0.00 0.00 5.68
717 785 0.986550 TTTCCCGGGGAGGAAGGATC 60.987 60.000 23.50 0.00 46.44 3.36
771 841 0.536006 CGGCTCCCTTCCATTCCATC 60.536 60.000 0.00 0.00 0.00 3.51
784 854 0.107410 TTCCATCCCATTCCGTTCCG 60.107 55.000 0.00 0.00 0.00 4.30
785 855 1.223487 CCATCCCATTCCGTTCCGT 59.777 57.895 0.00 0.00 0.00 4.69
786 856 0.393808 CCATCCCATTCCGTTCCGTT 60.394 55.000 0.00 0.00 0.00 4.44
787 857 1.014352 CATCCCATTCCGTTCCGTTC 58.986 55.000 0.00 0.00 0.00 3.95
788 858 0.107361 ATCCCATTCCGTTCCGTTCC 60.107 55.000 0.00 0.00 0.00 3.62
1155 1247 4.215613 GTGATTTGGAGTTTGTGGGACTAC 59.784 45.833 0.00 0.00 0.00 2.73
1169 1261 5.108187 TGGGACTACCAGTACTACTACTG 57.892 47.826 0.00 3.30 46.80 2.74
1178 1270 1.603326 GTACTACTACTGGGCTCTCGC 59.397 57.143 0.00 0.00 0.00 5.03
1191 1283 1.436600 CTCTCGCTTGTGCTTGTGAT 58.563 50.000 0.00 0.00 36.97 3.06
1192 1284 1.802960 CTCTCGCTTGTGCTTGTGATT 59.197 47.619 0.00 0.00 36.97 2.57
1228 1321 4.220821 GGCTCTCTCCACGGATTGATTATA 59.779 45.833 0.00 0.00 0.00 0.98
1251 1344 1.571919 GTGTGATCAGGCCATCGTAC 58.428 55.000 5.01 0.00 0.00 3.67
1270 1363 1.351707 CCCAATGCGTCGAATTCGG 59.648 57.895 26.47 13.30 40.29 4.30
1274 1367 1.087771 AATGCGTCGAATTCGGGTCC 61.088 55.000 26.47 13.37 40.29 4.46
1277 1370 2.202837 GTCGAATTCGGGTCCGGG 60.203 66.667 26.47 0.00 40.29 5.73
1296 1389 5.361285 TCCGGGGTAATATTTGGATTTGTTG 59.639 40.000 0.00 0.00 0.00 3.33
1313 1406 3.451894 GGGGGTTGCTGCAATCGG 61.452 66.667 19.11 0.00 0.00 4.18
1315 1408 1.377987 GGGGTTGCTGCAATCGGTA 60.378 57.895 19.11 0.00 0.00 4.02
1316 1409 0.751643 GGGGTTGCTGCAATCGGTAT 60.752 55.000 19.11 0.00 0.00 2.73
1317 1410 0.381801 GGGTTGCTGCAATCGGTATG 59.618 55.000 19.11 0.00 0.00 2.39
1359 1454 1.997040 TGGGGGTACTTTTATGCCTGT 59.003 47.619 0.00 0.00 0.00 4.00
1391 1490 8.833231 TCAGTTCAGTACTAATTTCTTTGGAG 57.167 34.615 0.00 0.00 34.56 3.86
1401 1500 7.593825 ACTAATTTCTTTGGAGTGGAATTTCG 58.406 34.615 0.00 0.00 0.00 3.46
1441 1540 2.148446 TCCCATCCAATTTCCTGCTG 57.852 50.000 0.00 0.00 0.00 4.41
1454 1553 5.590530 TTTCCTGCTGTGTGTGTTAATTT 57.409 34.783 0.00 0.00 0.00 1.82
1463 1562 9.803315 TGCTGTGTGTGTTAATTTGTTATTTTA 57.197 25.926 0.00 0.00 0.00 1.52
1487 1587 9.891828 TTAGTTTTACTGAAATATGTGTGCTTG 57.108 29.630 0.00 0.00 0.00 4.01
1494 1594 0.729116 ATATGTGTGCTTGCGTCTGC 59.271 50.000 0.00 0.00 43.20 4.26
1511 1611 5.004726 GCGTCTGCATAATTGTTGATTTTCC 59.995 40.000 0.00 0.00 42.15 3.13
1512 1612 6.092092 CGTCTGCATAATTGTTGATTTTCCA 58.908 36.000 0.00 0.00 0.00 3.53
1513 1613 6.033831 CGTCTGCATAATTGTTGATTTTCCAC 59.966 38.462 0.00 0.00 0.00 4.02
1514 1614 6.033831 GTCTGCATAATTGTTGATTTTCCACG 59.966 38.462 0.00 0.00 0.00 4.94
1523 1623 6.384258 TGTTGATTTTCCACGAAGATGAAA 57.616 33.333 0.00 0.00 0.00 2.69
1526 1626 7.925483 TGTTGATTTTCCACGAAGATGAAAAAT 59.075 29.630 0.00 0.00 41.04 1.82
1577 1677 0.109365 TTCATTTCGTTGCATGCCCG 60.109 50.000 16.68 17.36 0.00 6.13
1595 1695 3.003793 GCCCGCCTTCTTGAATAATCTTC 59.996 47.826 0.00 0.00 0.00 2.87
1608 1708 8.985315 TTGAATAATCTTCAAGACCAGCATAT 57.015 30.769 0.00 0.00 33.90 1.78
1676 1781 3.996150 AAATCAACACTGACAAGCCTG 57.004 42.857 0.00 0.00 33.30 4.85
1703 1808 6.321945 TGCTCATATGATTTTGCCATTACAGT 59.678 34.615 5.72 0.00 0.00 3.55
1877 1982 5.374921 ACTTTGCATGATCCTGAATCCTAG 58.625 41.667 0.00 0.00 33.01 3.02
1879 1984 2.977580 TGCATGATCCTGAATCCTAGCT 59.022 45.455 0.00 0.00 33.01 3.32
1881 1986 4.141321 TGCATGATCCTGAATCCTAGCTTT 60.141 41.667 0.00 0.00 33.01 3.51
1884 1989 3.070159 TGATCCTGAATCCTAGCTTTCGG 59.930 47.826 0.00 0.00 33.01 4.30
1941 2047 7.219917 TGTTAGAAATCGTTTGCTTTCTTTGTG 59.780 33.333 2.19 0.00 40.18 3.33
1943 2049 5.743872 AGAAATCGTTTGCTTTCTTTGTGTC 59.256 36.000 0.00 0.00 37.28 3.67
1947 2053 3.786048 CGTTTGCTTTCTTTGTGTCTGTC 59.214 43.478 0.00 0.00 0.00 3.51
1983 2093 1.934220 TTCTGTCTCAGGTAGCCGCG 61.934 60.000 0.00 0.00 31.51 6.46
2082 2192 3.485394 TGTGACCATGCATGTAAGTGTT 58.515 40.909 24.58 0.48 0.00 3.32
2086 2196 3.753272 GACCATGCATGTAAGTGTTGAGT 59.247 43.478 24.58 11.29 0.00 3.41
2098 2208 2.423538 AGTGTTGAGTTTTGGAGCACAC 59.576 45.455 0.00 0.00 0.00 3.82
2111 2221 2.352715 GGAGCACACATTTTTACCAGCC 60.353 50.000 0.00 0.00 0.00 4.85
2113 2223 2.899256 AGCACACATTTTTACCAGCCAT 59.101 40.909 0.00 0.00 0.00 4.40
2134 2247 7.389884 AGCCATGTAATATCACTGCTATCTTTG 59.610 37.037 0.00 0.00 0.00 2.77
2167 2282 5.731957 TTGGTTTTTATTACCTTCAGGCC 57.268 39.130 0.00 0.00 39.32 5.19
2173 2288 0.546122 ATTACCTTCAGGCCGATGCA 59.454 50.000 0.00 0.00 40.13 3.96
2212 2327 1.503542 GCAGATGACCTTGCAACCG 59.496 57.895 0.00 0.00 0.00 4.44
2232 2347 3.495753 CCGCTTAACCCGGTAATTCATAC 59.504 47.826 0.00 0.00 40.84 2.39
2233 2348 4.374399 CGCTTAACCCGGTAATTCATACT 58.626 43.478 0.00 0.00 34.74 2.12
2234 2349 4.446719 CGCTTAACCCGGTAATTCATACTC 59.553 45.833 0.00 0.00 34.74 2.59
2236 2351 3.851458 AACCCGGTAATTCATACTCCC 57.149 47.619 0.00 0.00 34.74 4.30
2237 2352 3.056201 ACCCGGTAATTCATACTCCCT 57.944 47.619 0.00 0.00 34.74 4.20
2238 2353 2.970640 ACCCGGTAATTCATACTCCCTC 59.029 50.000 0.00 0.00 34.74 4.30
2239 2354 2.302157 CCCGGTAATTCATACTCCCTCC 59.698 54.545 0.00 0.00 34.74 4.30
2240 2355 2.029290 CCGGTAATTCATACTCCCTCCG 60.029 54.545 0.00 0.00 34.74 4.63
2243 2358 4.629092 GGTAATTCATACTCCCTCCGTTC 58.371 47.826 0.00 0.00 34.74 3.95
2244 2359 3.840124 AATTCATACTCCCTCCGTTCC 57.160 47.619 0.00 0.00 0.00 3.62
2245 2360 2.241281 TTCATACTCCCTCCGTTCCA 57.759 50.000 0.00 0.00 0.00 3.53
2246 2361 2.241281 TCATACTCCCTCCGTTCCAA 57.759 50.000 0.00 0.00 0.00 3.53
2247 2362 2.542550 TCATACTCCCTCCGTTCCAAA 58.457 47.619 0.00 0.00 0.00 3.28
2248 2363 2.907696 TCATACTCCCTCCGTTCCAAAA 59.092 45.455 0.00 0.00 0.00 2.44
2249 2364 3.521937 TCATACTCCCTCCGTTCCAAAAT 59.478 43.478 0.00 0.00 0.00 1.82
2251 2366 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2254 2369 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2255 2370 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2256 2371 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2257 2372 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2258 2373 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2259 2374 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2260 2375 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2261 2376 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2262 2377 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2263 2378 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2264 2379 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2265 2380 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
2266 2381 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
2267 2382 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
2268 2383 9.403583 TCCAAAATAGATGACCCAACTTTATAC 57.596 33.333 0.00 0.00 0.00 1.47
2269 2384 9.408648 CCAAAATAGATGACCCAACTTTATACT 57.591 33.333 0.00 0.00 0.00 2.12
2276 2391 9.449719 AGATGACCCAACTTTATACTAACTTTG 57.550 33.333 0.00 0.00 0.00 2.77
2277 2392 9.227777 GATGACCCAACTTTATACTAACTTTGT 57.772 33.333 0.00 0.00 0.00 2.83
2279 2394 9.492973 TGACCCAACTTTATACTAACTTTGTAC 57.507 33.333 0.00 0.00 0.00 2.90
2280 2395 9.492973 GACCCAACTTTATACTAACTTTGTACA 57.507 33.333 0.00 0.00 0.00 2.90
2281 2396 9.850198 ACCCAACTTTATACTAACTTTGTACAA 57.150 29.630 3.59 3.59 0.00 2.41
2296 2411 7.687941 CTTTGTACAAAGTTGGGTCATCTAT 57.312 36.000 31.55 0.00 42.02 1.98
2297 2412 8.110860 CTTTGTACAAAGTTGGGTCATCTATT 57.889 34.615 31.55 0.00 42.02 1.73
2298 2413 8.472007 TTTGTACAAAGTTGGGTCATCTATTT 57.528 30.769 17.01 0.00 0.00 1.40
2299 2414 8.472007 TTGTACAAAGTTGGGTCATCTATTTT 57.528 30.769 5.64 0.00 0.00 1.82
2300 2415 7.881142 TGTACAAAGTTGGGTCATCTATTTTG 58.119 34.615 0.00 0.00 0.00 2.44
2301 2416 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
2302 2417 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2303 2418 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
2304 2419 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2305 2420 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2306 2421 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2307 2422 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2308 2423 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2309 2424 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2310 2425 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2311 2426 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2312 2427 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2333 2448 4.854173 AGTATTTACCATGTGCCATGTGA 58.146 39.130 12.36 0.33 0.00 3.58
2553 2669 4.767255 CCTCCGCTGGTCTGTGCC 62.767 72.222 0.00 0.00 0.00 5.01
2609 2725 9.565213 GAATTTTACTTGATTTCATGGAGTGAG 57.435 33.333 0.00 0.00 38.29 3.51
2646 2762 6.169557 TCTTCTTCTAACTTGCCTGTAACA 57.830 37.500 0.00 0.00 0.00 2.41
2746 2867 0.439985 CACATCTTTCGCGGTGAGTG 59.560 55.000 6.13 4.60 33.16 3.51
2806 2928 4.159135 GGGAACAATGTCAAGCATGATTCT 59.841 41.667 0.00 0.00 38.01 2.40
2831 2953 4.076394 CTGTTTACTCAATTTTCCCCCGA 58.924 43.478 0.00 0.00 0.00 5.14
2846 2968 4.300345 TCCCCCGATGAAGGTTTATCTTA 58.700 43.478 0.00 0.00 0.00 2.10
2847 2969 4.722781 TCCCCCGATGAAGGTTTATCTTAA 59.277 41.667 0.00 0.00 0.00 1.85
2848 2970 5.063880 CCCCCGATGAAGGTTTATCTTAAG 58.936 45.833 0.00 0.00 0.00 1.85
2871 2993 8.546597 AAGAAGAGTTAAGAGAATGAAGAAGC 57.453 34.615 0.00 0.00 0.00 3.86
3069 3226 3.755378 ACTCCAGCACACAAATTCTCATC 59.245 43.478 0.00 0.00 0.00 2.92
3092 3249 4.944930 CGGTCAAATTTGTGTATCCCCTTA 59.055 41.667 17.47 0.00 0.00 2.69
3108 3265 9.147732 GTATCCCCTTAAATTTTCAGGAATGAT 57.852 33.333 14.88 14.26 0.00 2.45
3171 3328 3.504906 CACAAACTGTCATGCCATCTTCT 59.495 43.478 0.00 0.00 0.00 2.85
3330 3489 9.131791 TCCTTCTGAATGCTTTAAGTTTAAACT 57.868 29.630 15.22 15.22 42.04 2.66
3358 3517 2.033141 TGCAGAGCCAGTCCTTGC 59.967 61.111 0.00 0.00 0.00 4.01
3454 3613 5.002516 AGGATGCTTTTTGAGACAGAAGAG 58.997 41.667 0.00 0.00 0.00 2.85
3481 3640 5.580022 AGTGTTAGGAGGTATGCCAAATTT 58.420 37.500 1.54 0.00 37.19 1.82
3519 3679 9.283420 GCTTTTCATCTTTTATTCTAGACAAGC 57.717 33.333 0.00 0.00 0.00 4.01
3728 3893 1.131638 TGCCTCCAGTCAAGTCTGTT 58.868 50.000 0.00 0.00 34.02 3.16
3756 3921 0.878416 TCGCCTGTTGTTTACCATGC 59.122 50.000 0.00 0.00 0.00 4.06
4043 4250 3.072330 TGATGGACAGCTGGTCTTTAACA 59.928 43.478 19.93 6.65 46.16 2.41
4066 4273 6.073548 ACAAGCATTCGTAAATAGCTATGCTC 60.074 38.462 14.86 4.95 45.59 4.26
4081 4288 5.406780 AGCTATGCTCGAATAATTGTGTAGC 59.593 40.000 0.00 0.00 30.62 3.58
4084 4291 6.624352 ATGCTCGAATAATTGTGTAGCATT 57.376 33.333 11.13 0.00 44.45 3.56
4092 4299 7.164826 CGAATAATTGTGTAGCATTCTTTCAGC 59.835 37.037 0.00 0.00 0.00 4.26
4114 4321 9.851686 TCAGCATGGAGTGTTATAAATTATCTT 57.148 29.630 0.00 0.00 36.16 2.40
4219 4426 1.212751 GAATTTCGGTGGTGCTGGC 59.787 57.895 0.00 0.00 0.00 4.85
4237 4444 1.405872 GCATGAATCCCTGGATGCAA 58.594 50.000 10.90 0.00 42.83 4.08
4264 4471 1.017177 TGGATGCGTCGTTACTTGGC 61.017 55.000 0.00 0.00 0.00 4.52
4270 4477 1.936203 GCGTCGTTACTTGGCCTACAA 60.936 52.381 3.32 0.00 37.55 2.41
4357 4564 2.623915 GCAGTTCCAGCAGCCACAG 61.624 63.158 0.00 0.00 0.00 3.66
4372 4579 2.436417 CCACAGAACATGGTTGGTAGG 58.564 52.381 0.00 0.00 32.08 3.18
4759 4966 1.288188 TGAGCTCATTGTCCCCATCA 58.712 50.000 13.74 0.00 0.00 3.07
4762 4969 1.105759 GCTCATTGTCCCCATCAGGC 61.106 60.000 0.00 0.00 0.00 4.85
4837 5044 2.103263 CCTGAGTATGTCAAGGCCTACC 59.897 54.545 5.16 0.00 33.60 3.18
4903 5110 3.020984 GGAGTCTCTGATTCCTTCTCGT 58.979 50.000 0.00 0.00 35.86 4.18
5293 5500 4.979197 GTGAGTGGCTTTCTCTATATGACG 59.021 45.833 0.00 0.00 33.59 4.35
5339 5546 7.340487 CCTTGAAACTATCTTGCTTATTTCCCT 59.660 37.037 0.00 0.00 0.00 4.20
5340 5547 7.630242 TGAAACTATCTTGCTTATTTCCCTG 57.370 36.000 0.00 0.00 0.00 4.45
5341 5548 7.402054 TGAAACTATCTTGCTTATTTCCCTGA 58.598 34.615 0.00 0.00 0.00 3.86
5342 5549 7.888021 TGAAACTATCTTGCTTATTTCCCTGAA 59.112 33.333 0.00 0.00 0.00 3.02
5343 5550 8.650143 AAACTATCTTGCTTATTTCCCTGAAA 57.350 30.769 0.00 0.00 35.94 2.69
5344 5551 7.631717 ACTATCTTGCTTATTTCCCTGAAAC 57.368 36.000 0.00 0.00 34.23 2.78
5345 5552 7.406104 ACTATCTTGCTTATTTCCCTGAAACT 58.594 34.615 0.00 0.00 34.23 2.66
5346 5553 8.548877 ACTATCTTGCTTATTTCCCTGAAACTA 58.451 33.333 0.00 0.00 34.23 2.24
5347 5554 9.566432 CTATCTTGCTTATTTCCCTGAAACTAT 57.434 33.333 0.00 0.00 34.23 2.12
5348 5555 7.630242 TCTTGCTTATTTCCCTGAAACTATG 57.370 36.000 0.00 0.00 34.23 2.23
5349 5556 7.175104 TCTTGCTTATTTCCCTGAAACTATGT 58.825 34.615 0.00 0.00 34.23 2.29
5350 5557 7.669722 TCTTGCTTATTTCCCTGAAACTATGTT 59.330 33.333 0.00 0.00 34.23 2.71
5351 5558 7.156876 TGCTTATTTCCCTGAAACTATGTTG 57.843 36.000 0.00 0.00 34.23 3.33
5352 5559 6.036470 GCTTATTTCCCTGAAACTATGTTGC 58.964 40.000 0.00 0.00 34.23 4.17
5353 5560 6.127619 GCTTATTTCCCTGAAACTATGTTGCT 60.128 38.462 0.00 0.00 34.23 3.91
5354 5561 7.577616 GCTTATTTCCCTGAAACTATGTTGCTT 60.578 37.037 0.00 0.00 34.23 3.91
5355 5562 8.871629 TTATTTCCCTGAAACTATGTTGCTTA 57.128 30.769 0.00 0.00 34.23 3.09
5356 5563 7.961326 ATTTCCCTGAAACTATGTTGCTTAT 57.039 32.000 0.00 0.00 34.23 1.73
5357 5564 7.775053 TTTCCCTGAAACTATGTTGCTTATT 57.225 32.000 0.00 0.00 0.00 1.40
5358 5565 7.775053 TTCCCTGAAACTATGTTGCTTATTT 57.225 32.000 0.00 0.00 0.00 1.40
5359 5566 7.391148 TCCCTGAAACTATGTTGCTTATTTC 57.609 36.000 0.00 0.00 0.00 2.17
5360 5567 6.377146 TCCCTGAAACTATGTTGCTTATTTCC 59.623 38.462 0.00 0.00 0.00 3.13
5361 5568 6.405842 CCCTGAAACTATGTTGCTTATTTCCC 60.406 42.308 0.00 0.00 0.00 3.97
5429 5640 3.876914 TGCCCATTTCGTGACTATCAATC 59.123 43.478 0.00 0.00 0.00 2.67
5430 5641 4.130118 GCCCATTTCGTGACTATCAATCT 58.870 43.478 0.00 0.00 0.00 2.40
5431 5642 5.163353 TGCCCATTTCGTGACTATCAATCTA 60.163 40.000 0.00 0.00 0.00 1.98
5432 5643 5.934625 GCCCATTTCGTGACTATCAATCTAT 59.065 40.000 0.00 0.00 0.00 1.98
5496 5708 8.232913 TGCTATTTTTACTCAACTTTTGGAGT 57.767 30.769 0.00 0.00 45.72 3.85
5563 5775 8.087750 TCTGATGTTTTGGTAAATTGTTCCATC 58.912 33.333 0.00 0.00 0.00 3.51
5665 5878 9.113838 CTTGATATCACCAAGTTTAGCAACTAT 57.886 33.333 4.48 0.00 42.89 2.12
5819 6032 0.323957 GTAAGTTCCTTGACCGCCCT 59.676 55.000 0.00 0.00 0.00 5.19
5856 6069 6.701400 GTGTTACTTCATTTTCCATGCTGTTT 59.299 34.615 0.00 0.00 0.00 2.83
5875 6088 1.323412 TTTTAACAGTGGTGCCGCAT 58.677 45.000 0.00 0.00 0.00 4.73
5876 6089 0.595588 TTTAACAGTGGTGCCGCATG 59.404 50.000 0.00 0.00 0.00 4.06
5907 6120 1.202758 TGCAGGGAATTCGTGAACAGT 60.203 47.619 9.94 0.00 33.39 3.55
6006 6219 2.764547 GGGAAGAGGCTAGGCGGT 60.765 66.667 11.10 0.00 0.00 5.68
6009 6222 2.284699 AAGAGGCTAGGCGGTGGT 60.285 61.111 11.10 0.00 0.00 4.16
6036 6249 3.270262 GGTAGCAGCTGCGACGACTAT 62.270 57.143 35.37 19.36 45.66 2.12
6115 6328 1.816224 AGGTCGAGTTCTGAAGAGAGC 59.184 52.381 9.44 9.44 0.00 4.09
6116 6329 1.542030 GGTCGAGTTCTGAAGAGAGCA 59.458 52.381 11.46 0.00 31.98 4.26
6117 6330 2.029828 GGTCGAGTTCTGAAGAGAGCAA 60.030 50.000 11.46 0.00 31.98 3.91
6118 6331 3.553096 GGTCGAGTTCTGAAGAGAGCAAA 60.553 47.826 11.46 0.00 31.98 3.68
6119 6332 3.672867 GTCGAGTTCTGAAGAGAGCAAAG 59.327 47.826 0.00 0.00 31.98 2.77
6120 6333 2.992543 CGAGTTCTGAAGAGAGCAAAGG 59.007 50.000 0.00 0.00 31.98 3.11
6122 6335 1.809547 GTTCTGAAGAGAGCAAAGGCC 59.190 52.381 0.00 0.00 42.56 5.19
6123 6336 0.326264 TCTGAAGAGAGCAAAGGCCC 59.674 55.000 0.00 0.00 42.56 5.80
6124 6337 0.327591 CTGAAGAGAGCAAAGGCCCT 59.672 55.000 0.00 0.00 42.56 5.19
6125 6338 0.326264 TGAAGAGAGCAAAGGCCCTC 59.674 55.000 0.00 0.00 44.54 4.30
6128 6341 3.322318 GAGAGCAAAGGCCCTCGCT 62.322 63.158 9.98 9.98 42.56 4.93
6129 6342 2.360475 GAGCAAAGGCCCTCGCTT 60.360 61.111 11.34 0.00 42.56 4.68
6130 6343 1.078426 GAGCAAAGGCCCTCGCTTA 60.078 57.895 11.34 0.00 42.56 3.09
6131 6344 0.676782 GAGCAAAGGCCCTCGCTTAA 60.677 55.000 11.34 0.00 42.56 1.85
6132 6345 0.034089 AGCAAAGGCCCTCGCTTAAT 60.034 50.000 0.00 0.00 42.56 1.40
6134 6347 0.101219 CAAAGGCCCTCGCTTAATGC 59.899 55.000 0.00 0.00 38.57 3.56
6135 6348 0.034089 AAAGGCCCTCGCTTAATGCT 60.034 50.000 0.00 0.00 40.11 3.79
6227 6456 2.283298 AGCAAGCACATAGACCATTCG 58.717 47.619 0.00 0.00 0.00 3.34
6256 6486 4.503370 GCTCTTTAAGTCATGTACTACCGC 59.497 45.833 0.00 0.00 37.50 5.68
6278 6508 5.647589 GCCTAATAATCATGCCATGTGATG 58.352 41.667 4.31 0.00 36.49 3.07
6279 6509 5.416639 GCCTAATAATCATGCCATGTGATGA 59.583 40.000 4.31 6.40 36.49 2.92
6280 6510 6.096423 GCCTAATAATCATGCCATGTGATGAT 59.904 38.462 4.31 9.77 40.35 2.45
6281 6511 7.283807 GCCTAATAATCATGCCATGTGATGATA 59.716 37.037 14.11 6.51 38.17 2.15
6289 6519 5.699097 TGCCATGTGATGATATCATGTTG 57.301 39.130 22.86 13.09 42.04 3.33
6350 6583 1.044611 TTGGTAAGCCTGCCAAAACC 58.955 50.000 1.92 0.00 43.53 3.27
6353 6586 0.603065 GTAAGCCTGCCAAAACCCTG 59.397 55.000 0.00 0.00 0.00 4.45
6354 6587 1.184970 TAAGCCTGCCAAAACCCTGC 61.185 55.000 0.00 0.00 0.00 4.85
6363 6596 1.242076 CAAAACCCTGCTCTGTGGAG 58.758 55.000 0.00 0.00 42.18 3.86
6365 6598 0.109342 AAACCCTGCTCTGTGGAGTG 59.891 55.000 0.00 0.00 41.38 3.51
6368 6604 1.374190 CCTGCTCTGTGGAGTGCTT 59.626 57.895 0.00 0.00 41.38 3.91
6398 6636 2.695666 TCCTGTGAATGTAGGCTCTAGC 59.304 50.000 0.00 0.00 41.14 3.42
6423 6661 3.625313 TCAATTCTCTTGTCGTTGTTGCA 59.375 39.130 0.00 0.00 0.00 4.08
6424 6662 3.885484 ATTCTCTTGTCGTTGTTGCAG 57.115 42.857 0.00 0.00 0.00 4.41
6509 6768 4.378874 GCAAGACACCAGAATTCAGTTAGC 60.379 45.833 8.44 3.43 0.00 3.09
6512 6771 3.679389 ACACCAGAATTCAGTTAGCAGG 58.321 45.455 8.44 0.00 0.00 4.85
6513 6772 2.421424 CACCAGAATTCAGTTAGCAGGC 59.579 50.000 8.44 0.00 0.00 4.85
6514 6773 2.307098 ACCAGAATTCAGTTAGCAGGCT 59.693 45.455 8.44 0.00 0.00 4.58
6515 6774 2.941720 CCAGAATTCAGTTAGCAGGCTC 59.058 50.000 8.44 0.00 0.00 4.70
6516 6775 2.941720 CAGAATTCAGTTAGCAGGCTCC 59.058 50.000 8.44 0.00 0.00 4.70
6521 6780 0.610174 CAGTTAGCAGGCTCCAGTGA 59.390 55.000 0.00 0.00 0.00 3.41
6523 6782 1.277557 AGTTAGCAGGCTCCAGTGAAG 59.722 52.381 0.00 0.00 0.00 3.02
6550 6815 1.487976 TCATGGCCTCACTTCCAGATC 59.512 52.381 3.32 0.00 35.57 2.75
6557 6822 2.223688 CCTCACTTCCAGATCAGTAGCG 60.224 54.545 0.00 0.00 0.00 4.26
6568 6833 0.323999 TCAGTAGCGCCCTGGAGTTA 60.324 55.000 20.69 2.64 0.00 2.24
6586 6851 3.824443 AGTTACCACCATTTGCTGTTACC 59.176 43.478 0.00 0.00 0.00 2.85
6587 6852 2.373335 ACCACCATTTGCTGTTACCA 57.627 45.000 0.00 0.00 0.00 3.25
6588 6853 1.960689 ACCACCATTTGCTGTTACCAC 59.039 47.619 0.00 0.00 0.00 4.16
6594 6859 4.835615 ACCATTTGCTGTTACCACCATTTA 59.164 37.500 0.00 0.00 0.00 1.40
6597 6862 3.799432 TGCTGTTACCACCATTTACCT 57.201 42.857 0.00 0.00 0.00 3.08
6598 6863 3.417101 TGCTGTTACCACCATTTACCTG 58.583 45.455 0.00 0.00 0.00 4.00
6602 6891 5.553123 CTGTTACCACCATTTACCTGTACA 58.447 41.667 0.00 0.00 0.00 2.90
6620 6909 5.588240 TGTACATGTAGATGTAGAAAGGCG 58.412 41.667 12.70 0.00 44.16 5.52
6625 6914 2.015736 AGATGTAGAAAGGCGCTGTG 57.984 50.000 7.64 0.00 0.00 3.66
6708 7021 0.400594 GTATGTAGGCATCCACCCCC 59.599 60.000 0.00 0.00 36.58 5.40
6709 7022 0.029577 TATGTAGGCATCCACCCCCA 60.030 55.000 0.00 0.00 36.58 4.96
6710 7023 0.702356 ATGTAGGCATCCACCCCCAT 60.702 55.000 0.00 0.00 0.00 4.00
6711 7024 1.352622 TGTAGGCATCCACCCCCATC 61.353 60.000 0.00 0.00 0.00 3.51
6712 7025 1.005423 TAGGCATCCACCCCCATCA 59.995 57.895 0.00 0.00 0.00 3.07
6714 7027 0.403304 AGGCATCCACCCCCATCATA 60.403 55.000 0.00 0.00 0.00 2.15
6715 7028 0.482446 GGCATCCACCCCCATCATAA 59.518 55.000 0.00 0.00 0.00 1.90
6716 7029 1.077663 GGCATCCACCCCCATCATAAT 59.922 52.381 0.00 0.00 0.00 1.28
6717 7030 2.450476 GCATCCACCCCCATCATAATC 58.550 52.381 0.00 0.00 0.00 1.75
6718 7031 2.225091 GCATCCACCCCCATCATAATCA 60.225 50.000 0.00 0.00 0.00 2.57
6803 7164 1.440618 TCCCCTTGTGCCAAAGACTA 58.559 50.000 0.00 0.00 0.00 2.59
6804 7165 1.351017 TCCCCTTGTGCCAAAGACTAG 59.649 52.381 0.00 0.00 0.00 2.57
6805 7166 1.351017 CCCCTTGTGCCAAAGACTAGA 59.649 52.381 0.00 0.00 0.00 2.43
6880 7241 2.769621 TGATGCGATGCCCCTCCT 60.770 61.111 0.00 0.00 0.00 3.69
6884 7245 3.483869 GCGATGCCCCTCCTTCCT 61.484 66.667 0.00 0.00 0.00 3.36
6887 7248 1.534203 GATGCCCCTCCTTCCTTCC 59.466 63.158 0.00 0.00 0.00 3.46
6888 7249 1.230281 ATGCCCCTCCTTCCTTCCA 60.230 57.895 0.00 0.00 0.00 3.53
6899 7260 2.224967 CCTTCCTTCCATCCATCCATCC 60.225 54.545 0.00 0.00 0.00 3.51
6916 7277 2.528743 CCATCCATCACGCTCGCAC 61.529 63.158 0.00 0.00 0.00 5.34
6928 7289 0.881118 GCTCGCACCCATTTCTTCAA 59.119 50.000 0.00 0.00 0.00 2.69
6933 7294 1.067354 GCACCCATTTCTTCAAGCCTG 60.067 52.381 0.00 0.00 0.00 4.85
6937 7298 4.020839 CACCCATTTCTTCAAGCCTGAATT 60.021 41.667 0.00 0.00 40.78 2.17
6943 7312 4.989279 TCTTCAAGCCTGAATTAATGGC 57.011 40.909 7.11 7.11 46.42 4.40
6960 7329 2.190578 CGCTCCCAATCCAGTCCC 59.809 66.667 0.00 0.00 0.00 4.46
6972 7341 2.038490 AGTCCCGTCCCCAGGTAC 59.962 66.667 0.00 0.00 0.00 3.34
6990 7359 1.258445 ACCCGTCACTCCATCAGTCC 61.258 60.000 0.00 0.00 30.26 3.85
7006 7375 2.643304 CAGTCCATCCATCCATCCATCT 59.357 50.000 0.00 0.00 0.00 2.90
7017 7386 2.081161 ATCCATCTCCCACCTGGCC 61.081 63.158 0.00 0.00 0.00 5.36
7060 7429 3.896133 GCATCGTCGTCGCCCCTA 61.896 66.667 0.00 0.00 36.96 3.53
7061 7430 2.331805 CATCGTCGTCGCCCCTAG 59.668 66.667 0.00 0.00 36.96 3.02
7064 7433 4.849329 CGTCGTCGCCCCTAGCAC 62.849 72.222 0.00 0.00 44.04 4.40
7065 7434 4.849329 GTCGTCGCCCCTAGCACG 62.849 72.222 0.00 0.00 44.04 5.34
7068 7437 2.508663 GTCGCCCCTAGCACGAAC 60.509 66.667 0.00 0.00 44.04 3.95
7069 7438 3.766691 TCGCCCCTAGCACGAACC 61.767 66.667 0.00 0.00 44.04 3.62
7070 7439 3.771160 CGCCCCTAGCACGAACCT 61.771 66.667 0.00 0.00 44.04 3.50
7071 7440 2.187163 GCCCCTAGCACGAACCTC 59.813 66.667 0.00 0.00 42.97 3.85
7092 7461 2.365105 TCACCTCGGTGGGGATCC 60.365 66.667 15.58 1.92 44.85 3.36
7105 7474 2.340443 GATCCATCTCCGGTCGCC 59.660 66.667 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.277211 TACGATATGCCCGCTCGCC 62.277 63.158 0.00 0.00 35.89 5.54
2 3 2.087009 GTACGATATGCCCGCTCGC 61.087 63.158 0.00 0.00 35.89 5.03
3 4 1.796355 CGTACGATATGCCCGCTCG 60.796 63.158 10.44 0.00 38.34 5.03
4 5 2.087009 GCGTACGATATGCCCGCTC 61.087 63.158 21.65 0.00 41.06 5.03
42 43 2.263021 TGTGGCATGTGCAGTGAGC 61.263 57.895 7.36 0.00 44.36 4.26
77 78 4.157958 GCGCTCCTGCTTTGCTCG 62.158 66.667 0.00 0.00 36.97 5.03
89 90 4.521062 ATGAGGAGGCGTGCGCTC 62.521 66.667 16.21 3.51 41.60 5.03
90 91 4.521062 GATGAGGAGGCGTGCGCT 62.521 66.667 16.21 2.58 41.60 5.92
91 92 4.819761 TGATGAGGAGGCGTGCGC 62.820 66.667 8.17 8.17 41.06 6.09
92 93 2.584418 CTGATGAGGAGGCGTGCG 60.584 66.667 0.00 0.00 0.00 5.34
93 94 2.894387 GCTGATGAGGAGGCGTGC 60.894 66.667 0.00 0.00 0.00 5.34
94 95 1.812922 GTGCTGATGAGGAGGCGTG 60.813 63.158 0.00 0.00 0.00 5.34
95 96 1.986757 AGTGCTGATGAGGAGGCGT 60.987 57.895 0.00 0.00 0.00 5.68
96 97 1.521010 CAGTGCTGATGAGGAGGCG 60.521 63.158 0.00 0.00 0.00 5.52
97 98 1.818785 GCAGTGCTGATGAGGAGGC 60.819 63.158 8.18 0.00 0.00 4.70
98 99 1.117994 TAGCAGTGCTGATGAGGAGG 58.882 55.000 27.97 0.00 40.10 4.30
99 100 4.597404 TTATAGCAGTGCTGATGAGGAG 57.403 45.455 27.97 0.00 40.10 3.69
100 101 5.357742 TTTTATAGCAGTGCTGATGAGGA 57.642 39.130 27.97 5.87 40.10 3.71
109 110 4.261614 GGGCAGGTATTTTTATAGCAGTGC 60.262 45.833 7.13 7.13 0.00 4.40
131 137 1.967319 ACTTGTACAGTTGTGCAGGG 58.033 50.000 14.77 9.47 40.85 4.45
177 204 1.226407 GTACGTACGCCCTTCCGTC 60.226 63.158 16.72 0.00 42.20 4.79
180 207 1.094785 TACAGTACGTACGCCCTTCC 58.905 55.000 19.49 0.00 0.00 3.46
181 208 2.179949 GTACAGTACGTACGCCCTTC 57.820 55.000 19.49 6.51 41.13 3.46
214 250 2.041405 CAGTCCCCCTCCCTCTCC 60.041 72.222 0.00 0.00 0.00 3.71
220 256 1.916206 GCTTTCCTCAGTCCCCCTCC 61.916 65.000 0.00 0.00 0.00 4.30
228 264 1.219393 GCTAGCCGCTTTCCTCAGT 59.781 57.895 2.29 0.00 35.14 3.41
317 353 2.445654 CTCCCTCCTCCTCTGGCC 60.446 72.222 0.00 0.00 0.00 5.36
336 372 3.130160 CTTGGGCTCGGCTTGCTC 61.130 66.667 0.00 0.00 0.00 4.26
367 404 4.112341 CTGCTTGCTTGCCTCGGC 62.112 66.667 0.00 0.00 42.35 5.54
420 465 3.573772 TTCGGAGCTGCGGTCACAG 62.574 63.158 27.80 0.00 40.80 3.66
421 466 3.573772 CTTCGGAGCTGCGGTCACA 62.574 63.158 27.80 4.62 0.00 3.58
422 467 2.811317 CTTCGGAGCTGCGGTCAC 60.811 66.667 27.80 0.00 0.00 3.67
423 468 4.742201 GCTTCGGAGCTGCGGTCA 62.742 66.667 27.80 11.06 45.65 4.02
432 477 1.568612 TTTGCTCGCTTGCTTCGGAG 61.569 55.000 0.00 0.00 0.00 4.63
433 478 1.568612 CTTTGCTCGCTTGCTTCGGA 61.569 55.000 0.00 0.00 0.00 4.55
434 479 1.154338 CTTTGCTCGCTTGCTTCGG 60.154 57.895 0.00 0.00 0.00 4.30
435 480 1.154338 CCTTTGCTCGCTTGCTTCG 60.154 57.895 0.00 0.00 0.00 3.79
436 481 0.167689 CTCCTTTGCTCGCTTGCTTC 59.832 55.000 0.00 0.00 0.00 3.86
437 482 1.239968 CCTCCTTTGCTCGCTTGCTT 61.240 55.000 0.00 0.00 0.00 3.91
438 483 1.673665 CCTCCTTTGCTCGCTTGCT 60.674 57.895 0.00 0.00 0.00 3.91
439 484 2.873288 CCTCCTTTGCTCGCTTGC 59.127 61.111 0.00 0.00 0.00 4.01
440 485 2.873288 GCCTCCTTTGCTCGCTTG 59.127 61.111 0.00 0.00 0.00 4.01
441 486 2.743928 CGCCTCCTTTGCTCGCTT 60.744 61.111 0.00 0.00 0.00 4.68
442 487 4.767255 CCGCCTCCTTTGCTCGCT 62.767 66.667 0.00 0.00 0.00 4.93
445 490 4.760047 TCGCCGCCTCCTTTGCTC 62.760 66.667 0.00 0.00 0.00 4.26
446 491 4.767255 CTCGCCGCCTCCTTTGCT 62.767 66.667 0.00 0.00 0.00 3.91
683 751 3.661025 GAAATCACCGCGGGCGTTG 62.661 63.158 31.76 18.91 37.81 4.10
788 858 0.036010 AACTCACTCGCCAGGGAATG 60.036 55.000 0.00 0.00 28.83 2.67
1072 1148 2.681778 ACGGGGCAGGAGACAGAG 60.682 66.667 0.00 0.00 0.00 3.35
1228 1321 2.599645 GATGGCCTGATCACACGGCT 62.600 60.000 20.35 5.39 38.96 5.52
1251 1344 1.351707 CGAATTCGACGCATTGGGG 59.648 57.895 23.29 0.00 43.02 4.96
1270 1363 3.801307 ATCCAAATATTACCCCGGACC 57.199 47.619 0.73 0.00 0.00 4.46
1274 1367 5.452636 CCCAACAAATCCAAATATTACCCCG 60.453 44.000 0.00 0.00 0.00 5.73
1277 1370 5.427157 ACCCCCAACAAATCCAAATATTACC 59.573 40.000 0.00 0.00 0.00 2.85
1296 1389 2.830186 TACCGATTGCAGCAACCCCC 62.830 60.000 10.85 0.00 0.00 5.40
1313 1406 7.698836 AACACACAAGAAGCATTTTTCATAC 57.301 32.000 0.00 0.00 0.00 2.39
1315 1408 7.414319 CCAAAACACACAAGAAGCATTTTTCAT 60.414 33.333 0.00 0.00 0.00 2.57
1316 1409 6.128336 CCAAAACACACAAGAAGCATTTTTCA 60.128 34.615 0.00 0.00 0.00 2.69
1317 1410 6.250089 CCAAAACACACAAGAAGCATTTTTC 58.750 36.000 0.00 0.00 0.00 2.29
1384 1483 3.821033 AGAACCGAAATTCCACTCCAAAG 59.179 43.478 0.00 0.00 0.00 2.77
1391 1490 3.191371 AGATTGCAGAACCGAAATTCCAC 59.809 43.478 0.00 0.00 0.00 4.02
1401 1500 2.246719 ATAGGCGAGATTGCAGAACC 57.753 50.000 0.00 0.00 36.28 3.62
1463 1562 6.863126 GCAAGCACACATATTTCAGTAAAACT 59.137 34.615 0.00 0.00 0.00 2.66
1464 1563 6.183359 CGCAAGCACACATATTTCAGTAAAAC 60.183 38.462 0.00 0.00 0.00 2.43
1466 1565 5.049060 ACGCAAGCACACATATTTCAGTAAA 60.049 36.000 0.00 0.00 45.62 2.01
1467 1566 4.454161 ACGCAAGCACACATATTTCAGTAA 59.546 37.500 0.00 0.00 45.62 2.24
1469 1568 2.813754 ACGCAAGCACACATATTTCAGT 59.186 40.909 0.00 0.00 45.62 3.41
1470 1569 3.125829 AGACGCAAGCACACATATTTCAG 59.874 43.478 0.00 0.00 45.62 3.02
1471 1570 3.073678 AGACGCAAGCACACATATTTCA 58.926 40.909 0.00 0.00 45.62 2.69
1472 1571 3.419915 CAGACGCAAGCACACATATTTC 58.580 45.455 0.00 0.00 45.62 2.17
1487 1587 5.004726 GGAAAATCAACAATTATGCAGACGC 59.995 40.000 0.00 0.00 39.24 5.19
1494 1594 8.800972 CATCTTCGTGGAAAATCAACAATTATG 58.199 33.333 0.00 0.00 0.00 1.90
1496 1596 8.105097 TCATCTTCGTGGAAAATCAACAATTA 57.895 30.769 0.00 0.00 0.00 1.40
1502 1602 9.973450 TTATTTTTCATCTTCGTGGAAAATCAA 57.027 25.926 8.67 2.19 41.29 2.57
1595 1695 7.361031 GCTCTGAATTCATATATGCTGGTCTTG 60.361 40.741 8.96 0.00 0.00 3.02
1635 1739 9.187996 TGATTTTTAACAGATAATGATGGCTCA 57.812 29.630 0.00 0.00 35.41 4.26
1676 1781 3.720949 TGGCAAAATCATATGAGCAGC 57.279 42.857 11.78 11.65 0.00 5.25
1877 1982 0.944311 TCTGTTCTGACGCCGAAAGC 60.944 55.000 0.00 0.00 38.52 3.51
1879 1984 1.942677 TTTCTGTTCTGACGCCGAAA 58.057 45.000 0.00 0.00 0.00 3.46
1881 1986 1.942677 TTTTTCTGTTCTGACGCCGA 58.057 45.000 0.00 0.00 0.00 5.54
1916 2022 7.220108 ACACAAAGAAAGCAAACGATTTCTAAC 59.780 33.333 6.17 0.00 45.81 2.34
1918 2024 6.791303 ACACAAAGAAAGCAAACGATTTCTA 58.209 32.000 6.17 0.00 45.81 2.10
1941 2047 3.587797 TCACCCAGTAAATCGACAGAC 57.412 47.619 0.00 0.00 0.00 3.51
1943 2049 5.643777 AGAAATTCACCCAGTAAATCGACAG 59.356 40.000 0.00 0.00 0.00 3.51
1947 2053 5.643777 AGACAGAAATTCACCCAGTAAATCG 59.356 40.000 0.00 0.00 0.00 3.34
1983 2093 4.835344 ACTCGATCTCTTTATTCGTCGAC 58.165 43.478 5.18 5.18 34.79 4.20
2082 2192 4.734398 AAAATGTGTGCTCCAAAACTCA 57.266 36.364 0.00 0.00 0.00 3.41
2086 2196 5.344743 TGGTAAAAATGTGTGCTCCAAAA 57.655 34.783 0.00 0.00 0.00 2.44
2098 2208 8.632679 AGTGATATTACATGGCTGGTAAAAATG 58.367 33.333 0.00 0.00 34.67 2.32
2111 2221 9.049523 ACACAAAGATAGCAGTGATATTACATG 57.950 33.333 1.78 3.24 35.97 3.21
2113 2223 9.448438 AAACACAAAGATAGCAGTGATATTACA 57.552 29.630 1.78 0.00 35.97 2.41
2134 2247 9.705290 AGGTAATAAAAACCAATGATCAAACAC 57.295 29.630 0.00 0.00 39.64 3.32
2167 2282 1.297967 CTCGTCCGTCTCTGCATCG 60.298 63.158 0.00 0.00 0.00 3.84
2173 2288 1.956297 CATAGACCTCGTCCGTCTCT 58.044 55.000 5.33 0.00 40.93 3.10
2212 2327 4.753610 GGAGTATGAATTACCGGGTTAAGC 59.246 45.833 4.31 0.00 0.00 3.09
2232 2347 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2233 2348 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2234 2349 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2236 2351 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2237 2352 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2238 2353 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2239 2354 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2240 2355 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2243 2358 9.408648 AGTATAAAGTTGGGTCATCTATTTTGG 57.591 33.333 0.00 0.00 0.00 3.28
2251 2366 9.227777 ACAAAGTTAGTATAAAGTTGGGTCATC 57.772 33.333 0.00 0.00 0.00 2.92
2254 2369 9.492973 TGTACAAAGTTAGTATAAAGTTGGGTC 57.507 33.333 0.00 0.00 0.00 4.46
2255 2370 9.850198 TTGTACAAAGTTAGTATAAAGTTGGGT 57.150 29.630 5.64 0.00 0.00 4.51
2273 2388 8.472007 AAATAGATGACCCAACTTTGTACAAA 57.528 30.769 19.53 19.53 0.00 2.83
2274 2389 8.356657 CAAAATAGATGACCCAACTTTGTACAA 58.643 33.333 3.59 3.59 0.00 2.41
2275 2390 7.040062 CCAAAATAGATGACCCAACTTTGTACA 60.040 37.037 0.00 0.00 0.00 2.90
2276 2391 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
2277 2392 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2278 2393 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2279 2394 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2280 2395 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2281 2396 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2282 2397 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2283 2398 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2284 2399 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2285 2400 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2286 2401 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2287 2402 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2288 2403 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2289 2404 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2290 2405 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2291 2406 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2292 2407 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2293 2408 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2294 2409 5.703730 AATACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
2295 2410 4.586306 AATACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
2296 2411 4.376225 AAATACTCCCTCCGTTCCAAAA 57.624 40.909 0.00 0.00 0.00 2.44
2297 2412 4.323715 GGTAAATACTCCCTCCGTTCCAAA 60.324 45.833 0.00 0.00 0.00 3.28
2298 2413 3.198417 GGTAAATACTCCCTCCGTTCCAA 59.802 47.826 0.00 0.00 0.00 3.53
2299 2414 2.767960 GGTAAATACTCCCTCCGTTCCA 59.232 50.000 0.00 0.00 0.00 3.53
2300 2415 2.767960 TGGTAAATACTCCCTCCGTTCC 59.232 50.000 0.00 0.00 0.00 3.62
2301 2416 4.141779 ACATGGTAAATACTCCCTCCGTTC 60.142 45.833 0.00 0.00 0.00 3.95
2302 2417 3.778629 ACATGGTAAATACTCCCTCCGTT 59.221 43.478 0.00 0.00 0.00 4.44
2303 2418 3.134081 CACATGGTAAATACTCCCTCCGT 59.866 47.826 0.00 0.00 0.00 4.69
2304 2419 3.728845 CACATGGTAAATACTCCCTCCG 58.271 50.000 0.00 0.00 0.00 4.63
2305 2420 3.477530 GCACATGGTAAATACTCCCTCC 58.522 50.000 0.00 0.00 0.00 4.30
2306 2421 3.118038 TGGCACATGGTAAATACTCCCTC 60.118 47.826 0.00 0.00 0.00 4.30
2307 2422 2.849943 TGGCACATGGTAAATACTCCCT 59.150 45.455 0.00 0.00 0.00 4.20
2308 2423 3.290948 TGGCACATGGTAAATACTCCC 57.709 47.619 0.00 0.00 0.00 4.30
2344 2460 7.399245 AAGTTACTCTCTTGGATACTGAGTC 57.601 40.000 0.00 0.00 38.67 3.36
2397 2513 3.057174 CAGCAGGTAGATACGGATCCTTC 60.057 52.174 10.75 4.19 31.81 3.46
2553 2669 1.726853 CTGGAAAGTGTAGGGAAGCG 58.273 55.000 0.00 0.00 0.00 4.68
2609 2725 4.187694 AGAAGAAGAGTTGATGATTCGGC 58.812 43.478 0.00 0.00 0.00 5.54
2646 2762 6.183360 GGCTGCATAGTGAAATCCTACAAAAT 60.183 38.462 0.50 0.00 0.00 1.82
2746 2867 5.278266 CCGAAGATATCAGAGACTGAGAACC 60.278 48.000 5.32 0.82 44.08 3.62
2806 2928 5.010213 CGGGGGAAAATTGAGTAAACAGAAA 59.990 40.000 0.00 0.00 0.00 2.52
2846 2968 8.374743 AGCTTCTTCATTCTCTTAACTCTTCTT 58.625 33.333 0.00 0.00 0.00 2.52
2847 2969 7.906327 AGCTTCTTCATTCTCTTAACTCTTCT 58.094 34.615 0.00 0.00 0.00 2.85
2848 2970 8.546597 AAGCTTCTTCATTCTCTTAACTCTTC 57.453 34.615 0.00 0.00 0.00 2.87
2871 2993 7.540055 CCTGCAAAATAAGAGCTTTTCAGTAAG 59.460 37.037 0.00 0.00 0.00 2.34
3069 3226 3.775661 GGGGATACACAAATTTGACCG 57.224 47.619 24.64 13.91 42.67 4.79
3092 3249 9.374838 GCTGATTGTTATCATTCCTGAAAATTT 57.625 29.630 0.00 0.00 39.94 1.82
3108 3265 4.908601 TCCCAGAAGAAGCTGATTGTTA 57.091 40.909 0.00 0.00 38.14 2.41
3198 3355 1.670406 AGCTGCAGCAAGAAGACCG 60.670 57.895 38.24 0.00 45.16 4.79
3330 3489 1.134128 TGGCTCTGCACAAACAGAAGA 60.134 47.619 0.00 0.00 45.72 2.87
3358 3517 3.749088 TGGCAAGTGGTATAACAAACTCG 59.251 43.478 0.00 0.00 0.00 4.18
3454 3613 3.055385 TGGCATACCTCCTAACACTTGAC 60.055 47.826 0.00 0.00 36.63 3.18
3519 3679 4.154195 AGTTAATACCGTTTCTTGCTGCAG 59.846 41.667 10.11 10.11 0.00 4.41
3644 3809 1.336755 GTGAGTTTGGCCAACGAACAT 59.663 47.619 20.35 4.15 44.49 2.71
3756 3921 5.809562 TGTCTAACAAAAACTTTGCATGGTG 59.190 36.000 0.00 0.00 0.00 4.17
3816 4023 3.072211 GCTAAACTGTGAGGTTGGTACC 58.928 50.000 4.43 4.43 45.39 3.34
4066 4273 7.164826 GCTGAAAGAATGCTACACAATTATTCG 59.835 37.037 0.00 0.00 34.07 3.34
4084 4291 8.579850 AATTTATAACACTCCATGCTGAAAGA 57.420 30.769 0.00 0.00 34.07 2.52
4114 4321 5.399991 TCCTTACCACCTACAGAAAGAGAA 58.600 41.667 0.00 0.00 0.00 2.87
4219 4426 1.684983 GGTTGCATCCAGGGATTCATG 59.315 52.381 9.02 0.00 31.62 3.07
4237 4444 2.045926 GACGCATCCAGCCTTGGT 60.046 61.111 0.00 0.00 45.26 3.67
4264 4471 5.334569 CGTTTGGTAAATGTCAGGTTGTAGG 60.335 44.000 0.00 0.00 0.00 3.18
4270 4477 3.756434 CCATCGTTTGGTAAATGTCAGGT 59.244 43.478 0.00 0.00 40.99 4.00
4303 4510 3.181418 ACATCTTTGTTGGGTCCTGGAAT 60.181 43.478 0.00 0.00 29.55 3.01
4357 4564 2.640184 GTAGCCCTACCAACCATGTTC 58.360 52.381 0.00 0.00 0.00 3.18
4837 5044 3.066190 TCAGGGACAGGTACCGCG 61.066 66.667 6.18 0.00 39.08 6.46
4903 5110 2.523168 TGCGTGGTGGACTGAGGA 60.523 61.111 0.00 0.00 0.00 3.71
5039 5246 5.398711 GTGAGTCTATATTAACGCCGAACAG 59.601 44.000 0.00 0.00 0.00 3.16
5293 5500 6.372659 TCAAGGAAGAAGTAACATGATTGCTC 59.627 38.462 0.00 0.00 0.00 4.26
5339 5546 6.945435 TCAGGGAAATAAGCAACATAGTTTCA 59.055 34.615 0.00 0.00 0.00 2.69
5340 5547 7.391148 TCAGGGAAATAAGCAACATAGTTTC 57.609 36.000 0.00 0.00 0.00 2.78
5341 5548 7.775053 TTCAGGGAAATAAGCAACATAGTTT 57.225 32.000 0.00 0.00 0.00 2.66
5342 5549 7.451566 AGTTTCAGGGAAATAAGCAACATAGTT 59.548 33.333 0.00 0.00 33.97 2.24
5343 5550 6.948309 AGTTTCAGGGAAATAAGCAACATAGT 59.052 34.615 0.00 0.00 33.97 2.12
5344 5551 7.396540 AGTTTCAGGGAAATAAGCAACATAG 57.603 36.000 0.00 0.00 33.97 2.23
5345 5552 8.902806 CATAGTTTCAGGGAAATAAGCAACATA 58.097 33.333 0.00 0.00 33.97 2.29
5346 5553 7.397192 ACATAGTTTCAGGGAAATAAGCAACAT 59.603 33.333 0.00 0.00 33.97 2.71
5347 5554 6.719370 ACATAGTTTCAGGGAAATAAGCAACA 59.281 34.615 0.00 0.00 33.97 3.33
5348 5555 7.158099 ACATAGTTTCAGGGAAATAAGCAAC 57.842 36.000 0.00 0.00 33.97 4.17
5349 5556 7.601856 CAACATAGTTTCAGGGAAATAAGCAA 58.398 34.615 0.00 0.00 33.97 3.91
5350 5557 6.350110 GCAACATAGTTTCAGGGAAATAAGCA 60.350 38.462 0.00 0.00 33.97 3.91
5351 5558 6.036470 GCAACATAGTTTCAGGGAAATAAGC 58.964 40.000 0.00 0.00 33.97 3.09
5352 5559 7.396540 AGCAACATAGTTTCAGGGAAATAAG 57.603 36.000 0.00 0.00 33.97 1.73
5353 5560 7.669722 AGAAGCAACATAGTTTCAGGGAAATAA 59.330 33.333 0.00 0.00 33.97 1.40
5354 5561 7.175104 AGAAGCAACATAGTTTCAGGGAAATA 58.825 34.615 0.00 0.00 33.97 1.40
5355 5562 6.012745 AGAAGCAACATAGTTTCAGGGAAAT 58.987 36.000 0.00 0.00 33.97 2.17
5356 5563 5.385198 AGAAGCAACATAGTTTCAGGGAAA 58.615 37.500 0.00 0.00 32.00 3.13
5357 5564 4.985538 AGAAGCAACATAGTTTCAGGGAA 58.014 39.130 0.00 0.00 32.00 3.97
5358 5565 4.640771 AGAAGCAACATAGTTTCAGGGA 57.359 40.909 0.00 0.00 32.00 4.20
5359 5566 5.712152 AAAGAAGCAACATAGTTTCAGGG 57.288 39.130 0.00 0.00 32.00 4.45
5360 5567 7.648142 TGTTAAAGAAGCAACATAGTTTCAGG 58.352 34.615 0.00 0.00 32.00 3.86
5361 5568 9.683069 ATTGTTAAAGAAGCAACATAGTTTCAG 57.317 29.630 0.00 0.00 34.78 3.02
5444 5655 8.154203 TCAGATGTGTGTCTACCAATTTTAAGA 58.846 33.333 0.00 0.00 0.00 2.10
5460 5671 7.977904 TGAGTAAAAATAGCATCAGATGTGTG 58.022 34.615 12.18 0.00 0.00 3.82
5496 5708 3.671008 AGTTGTAGTGTGCGGTCAATA 57.329 42.857 0.00 0.00 0.00 1.90
5563 5775 6.464895 AAAAATAACACATCAAATGCGGTG 57.535 33.333 0.00 0.00 37.29 4.94
5665 5878 3.446161 CCAGTTCCCTACGTAGTTCATGA 59.554 47.826 20.73 6.83 37.78 3.07
5770 5983 1.070786 GTCGCCAACCAGAAGGACA 59.929 57.895 0.00 0.00 38.69 4.02
5819 6032 5.385509 TGAAGTAACACAGATCATCGTCA 57.614 39.130 0.00 0.00 0.00 4.35
5856 6069 1.000827 CATGCGGCACCACTGTTAAAA 60.001 47.619 4.03 0.00 0.00 1.52
5875 6088 0.106268 TCCCTGCAAAGTTGGAAGCA 60.106 50.000 0.00 0.00 35.43 3.91
5876 6089 1.039856 TTCCCTGCAAAGTTGGAAGC 58.960 50.000 0.00 0.00 33.16 3.86
5907 6120 3.264193 ACAGGATCTTTATGCAGGACACA 59.736 43.478 0.00 0.00 0.00 3.72
6006 6219 4.015406 CTGCTACCGCCACCACCA 62.015 66.667 0.00 0.00 34.43 4.17
6009 6222 4.393155 CAGCTGCTACCGCCACCA 62.393 66.667 0.00 0.00 34.43 4.17
6036 6249 4.074526 GACTCCTGCCTGCTCGCA 62.075 66.667 0.00 0.00 37.19 5.10
6096 6309 1.542030 TGCTCTCTTCAGAACTCGACC 59.458 52.381 0.00 0.00 0.00 4.79
6115 6328 0.101219 GCATTAAGCGAGGGCCTTTG 59.899 55.000 7.89 4.69 41.24 2.77
6116 6329 2.493547 GCATTAAGCGAGGGCCTTT 58.506 52.632 7.89 0.00 41.24 3.11
6117 6330 4.242602 GCATTAAGCGAGGGCCTT 57.757 55.556 7.89 0.00 41.24 4.35
6227 6456 9.934190 GTAGTACATGACTTAAAGAGCTAGTAC 57.066 37.037 0.00 0.00 39.81 2.73
6256 6486 7.640597 ATCATCACATGGCATGATTATTAGG 57.359 36.000 32.74 13.27 36.51 2.69
6278 6508 9.255304 GTTCCTACTTCTTCTCAACATGATATC 57.745 37.037 0.00 0.00 0.00 1.63
6279 6509 8.986991 AGTTCCTACTTCTTCTCAACATGATAT 58.013 33.333 0.00 0.00 0.00 1.63
6280 6510 8.253810 CAGTTCCTACTTCTTCTCAACATGATA 58.746 37.037 0.00 0.00 30.26 2.15
6281 6511 7.102346 CAGTTCCTACTTCTTCTCAACATGAT 58.898 38.462 0.00 0.00 30.26 2.45
6289 6519 4.458642 ACGGTACAGTTCCTACTTCTTCTC 59.541 45.833 0.00 0.00 30.26 2.87
6350 6583 0.673022 GAAGCACTCCACAGAGCAGG 60.673 60.000 0.00 0.00 44.65 4.85
6353 6586 2.028567 AGTAAGAAGCACTCCACAGAGC 60.029 50.000 0.00 0.00 44.65 4.09
6354 6587 3.951775 AGTAAGAAGCACTCCACAGAG 57.048 47.619 0.00 0.00 46.36 3.35
6363 6596 6.595716 ACATTCACAGGATTAGTAAGAAGCAC 59.404 38.462 0.00 0.00 0.00 4.40
6365 6598 7.439655 CCTACATTCACAGGATTAGTAAGAAGC 59.560 40.741 0.00 0.00 33.42 3.86
6368 6604 6.611642 AGCCTACATTCACAGGATTAGTAAGA 59.388 38.462 0.00 0.00 33.42 2.10
6398 6636 5.149273 CAACAACGACAAGAGAATTGATGG 58.851 41.667 0.00 0.00 0.00 3.51
6424 6662 6.038603 TGCAGAATATGAACAAGATAGGCAAC 59.961 38.462 0.00 0.00 0.00 4.17
6509 6768 1.554160 AGATCACTTCACTGGAGCCTG 59.446 52.381 0.00 0.00 0.00 4.85
6521 6780 2.575279 AGTGAGGCCATGAAGATCACTT 59.425 45.455 14.10 1.77 46.29 3.16
6523 6782 2.706339 AGTGAGGCCATGAAGATCAC 57.294 50.000 5.01 8.35 40.41 3.06
6550 6815 0.179108 GTAACTCCAGGGCGCTACTG 60.179 60.000 20.70 20.70 35.74 2.74
6568 6833 2.373335 TGGTAACAGCAAATGGTGGT 57.627 45.000 16.12 12.47 46.90 4.16
6586 6851 7.047891 ACATCTACATGTACAGGTAAATGGTG 58.952 38.462 28.14 21.11 41.81 4.17
6587 6852 7.195374 ACATCTACATGTACAGGTAAATGGT 57.805 36.000 28.14 17.95 41.81 3.55
6588 6853 8.638873 TCTACATCTACATGTACAGGTAAATGG 58.361 37.037 28.14 16.69 41.81 3.16
6594 6859 6.407074 GCCTTTCTACATCTACATGTACAGGT 60.407 42.308 18.23 18.23 41.81 4.00
6597 6862 5.588240 CGCCTTTCTACATCTACATGTACA 58.412 41.667 0.08 0.00 41.81 2.90
6598 6863 4.444720 GCGCCTTTCTACATCTACATGTAC 59.555 45.833 0.08 0.00 41.81 2.90
6602 6891 3.133003 ACAGCGCCTTTCTACATCTACAT 59.867 43.478 2.29 0.00 0.00 2.29
6636 6925 1.607225 TCTTTGGGCCTATCCACCAT 58.393 50.000 4.53 0.00 36.38 3.55
6708 7021 5.192327 GCCTCAAAAGGGTGATTATGATG 57.808 43.478 0.00 0.00 43.58 3.07
6803 7164 3.303351 AATCCCCAATTCGATTGCTCT 57.697 42.857 0.00 0.00 38.92 4.09
6804 7165 3.633986 AGAAATCCCCAATTCGATTGCTC 59.366 43.478 0.00 0.00 38.92 4.26
6805 7166 3.633986 GAGAAATCCCCAATTCGATTGCT 59.366 43.478 0.00 1.20 37.12 3.91
6855 7216 1.232119 GGCATCGCATCACATCATCA 58.768 50.000 0.00 0.00 0.00 3.07
6880 7241 2.501667 TGGATGGATGGATGGAAGGAA 58.498 47.619 0.00 0.00 0.00 3.36
6884 7245 2.430963 TGGATGGATGGATGGATGGAA 58.569 47.619 0.00 0.00 0.00 3.53
6887 7248 3.353557 GTGATGGATGGATGGATGGATG 58.646 50.000 0.00 0.00 0.00 3.51
6888 7249 2.026542 CGTGATGGATGGATGGATGGAT 60.027 50.000 0.00 0.00 0.00 3.41
6899 7260 2.528743 GGTGCGAGCGTGATGGATG 61.529 63.158 0.00 0.00 0.00 3.51
6916 7277 4.813750 AATTCAGGCTTGAAGAAATGGG 57.186 40.909 16.88 0.00 45.89 4.00
6928 7289 1.312815 GAGCGCCATTAATTCAGGCT 58.687 50.000 2.29 6.71 46.14 4.58
6933 7294 2.029918 GGATTGGGAGCGCCATTAATTC 60.030 50.000 9.31 0.92 35.15 2.17
6937 7298 0.179020 CTGGATTGGGAGCGCCATTA 60.179 55.000 9.31 0.00 35.15 1.90
6943 7312 2.190578 GGGACTGGATTGGGAGCG 59.809 66.667 0.00 0.00 0.00 5.03
6972 7341 1.257750 TGGACTGATGGAGTGACGGG 61.258 60.000 0.00 0.00 33.83 5.28
6990 7359 1.990327 TGGGAGATGGATGGATGGATG 59.010 52.381 0.00 0.00 0.00 3.51
7017 7386 4.195334 CCTTGGGAGGGGCATCGG 62.195 72.222 0.00 0.00 39.55 4.18
7052 7421 3.766691 GGTTCGTGCTAGGGGCGA 61.767 66.667 0.00 0.00 45.43 5.54
7054 7423 2.187163 GAGGTTCGTGCTAGGGGC 59.813 66.667 0.00 0.00 42.22 5.80
7056 7425 1.218316 GGTGAGGTTCGTGCTAGGG 59.782 63.158 0.00 0.00 0.00 3.53
7057 7426 0.173708 GAGGTGAGGTTCGTGCTAGG 59.826 60.000 0.00 0.00 0.00 3.02
7058 7427 0.888619 TGAGGTGAGGTTCGTGCTAG 59.111 55.000 0.00 0.00 0.00 3.42
7059 7428 0.601558 GTGAGGTGAGGTTCGTGCTA 59.398 55.000 0.00 0.00 0.00 3.49
7060 7429 1.367840 GTGAGGTGAGGTTCGTGCT 59.632 57.895 0.00 0.00 0.00 4.40
7061 7430 1.668151 GGTGAGGTGAGGTTCGTGC 60.668 63.158 0.00 0.00 0.00 5.34
7063 7432 1.524863 CGAGGTGAGGTGAGGTTCGT 61.525 60.000 0.00 0.00 0.00 3.85
7064 7433 1.213013 CGAGGTGAGGTGAGGTTCG 59.787 63.158 0.00 0.00 0.00 3.95
7065 7434 1.186267 ACCGAGGTGAGGTGAGGTTC 61.186 60.000 0.00 0.00 41.10 3.62
7066 7435 1.152312 ACCGAGGTGAGGTGAGGTT 60.152 57.895 0.00 0.00 41.10 3.50
7089 7458 3.606662 CGGCGACCGGAGATGGAT 61.607 66.667 9.46 0.00 44.15 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.