Multiple sequence alignment - TraesCS7A01G461500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G461500 chr7A 100.000 6921 0 0 1 6921 657512390 657519310 0.000000e+00 12781
1 TraesCS7A01G461500 chr7A 90.761 184 13 2 5227 5406 83785013 83784830 6.940000e-60 243
2 TraesCS7A01G461500 chr7D 93.118 2688 118 27 739 3383 568748910 568751573 0.000000e+00 3877
3 TraesCS7A01G461500 chr7D 95.116 1720 38 14 3380 5089 568751685 568753368 0.000000e+00 2669
4 TraesCS7A01G461500 chr7D 92.440 1455 60 19 5508 6921 568753926 568755371 0.000000e+00 2032
5 TraesCS7A01G461500 chr7D 97.862 421 6 3 5088 5506 568753472 568753891 0.000000e+00 725
6 TraesCS7A01G461500 chr7B 96.420 2067 57 10 3376 5429 624942670 624944732 0.000000e+00 3391
7 TraesCS7A01G461500 chr7B 92.126 2197 108 28 1234 3383 624940390 624942568 0.000000e+00 3038
8 TraesCS7A01G461500 chr7B 91.454 1451 55 26 5508 6921 624945046 624946464 0.000000e+00 1929
9 TraesCS7A01G461500 chr7B 98.545 481 5 2 1 481 248265314 248264836 0.000000e+00 848
10 TraesCS7A01G461500 chr7B 87.000 500 26 9 729 1204 624939837 624940321 1.710000e-145 527
11 TraesCS7A01G461500 chr7B 97.222 252 7 0 478 729 580859561 580859310 1.780000e-115 427
12 TraesCS7A01G461500 chr7B 88.070 285 22 2 5225 5506 624944736 624945011 1.860000e-85 327
13 TraesCS7A01G461500 chr3A 99.168 481 4 0 1 481 604319346 604319826 0.000000e+00 867
14 TraesCS7A01G461500 chr3A 97.610 251 6 0 478 728 604319778 604320028 1.380000e-116 431
15 TraesCS7A01G461500 chr3A 90.206 194 15 2 5216 5405 353624406 353624599 4.140000e-62 250
16 TraesCS7A01G461500 chr5A 99.160 476 4 0 1 476 22282855 22282380 0.000000e+00 857
17 TraesCS7A01G461500 chr5A 96.838 253 8 0 478 730 446613041 446613293 2.310000e-114 424
18 TraesCS7A01G461500 chr5A 96.825 252 8 0 478 729 598308139 598307888 8.300000e-114 422
19 TraesCS7A01G461500 chr3B 98.753 481 6 0 1 481 766974049 766974529 0.000000e+00 856
20 TraesCS7A01G461500 chr3B 90.374 187 15 1 5225 5408 352239662 352239848 6.940000e-60 243
21 TraesCS7A01G461500 chr2A 98.753 481 5 1 1 481 86280950 86280471 0.000000e+00 854
22 TraesCS7A01G461500 chr6B 98.545 481 7 0 1 481 135857518 135857998 0.000000e+00 850
23 TraesCS7A01G461500 chr6B 96.471 255 9 0 478 732 474827419 474827673 8.300000e-114 422
24 TraesCS7A01G461500 chr6B 90.323 186 14 2 5225 5406 225525369 225525554 2.490000e-59 241
25 TraesCS7A01G461500 chr1A 98.745 478 6 0 1 478 520948808 520949285 0.000000e+00 850
26 TraesCS7A01G461500 chr1B 98.545 481 6 1 1 481 500916315 500916794 0.000000e+00 848
27 TraesCS7A01G461500 chr1B 96.813 251 8 0 478 728 500916746 500916996 2.990000e-113 420
28 TraesCS7A01G461500 chr4B 98.337 481 8 0 1 481 468278479 468277999 0.000000e+00 845
29 TraesCS7A01G461500 chr5B 97.610 251 6 0 478 728 609134630 609134380 1.380000e-116 431
30 TraesCS7A01G461500 chr4A 97.211 251 7 0 478 728 92207798 92207548 6.420000e-115 425
31 TraesCS7A01G461500 chr2B 97.211 251 7 0 478 728 689369777 689369527 6.420000e-115 425
32 TraesCS7A01G461500 chr4D 92.391 184 11 1 5225 5405 482703445 482703628 6.890000e-65 259
33 TraesCS7A01G461500 chr3D 91.667 180 12 1 5225 5401 422517614 422517793 5.360000e-61 246
34 TraesCS7A01G461500 chrUn 89.474 190 17 1 5220 5406 277314234 277314045 3.230000e-58 237


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G461500 chr7A 657512390 657519310 6920 False 12781.00 12781 100.000 1 6921 1 chr7A.!!$F1 6920
1 TraesCS7A01G461500 chr7D 568748910 568755371 6461 False 2325.75 3877 94.634 739 6921 4 chr7D.!!$F1 6182
2 TraesCS7A01G461500 chr7B 624939837 624946464 6627 False 1842.40 3391 91.014 729 6921 5 chr7B.!!$F1 6192
3 TraesCS7A01G461500 chr3A 604319346 604320028 682 False 649.00 867 98.389 1 728 2 chr3A.!!$F2 727
4 TraesCS7A01G461500 chr1B 500916315 500916996 681 False 634.00 848 97.679 1 728 2 chr1B.!!$F1 727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
528 529 0.033228 CTAGCTCTTAGGCGCTGCAT 59.967 55.000 7.64 0.00 37.05 3.96 F
999 1023 0.108585 CCCGGGAGAGAGAGAGAGAG 59.891 65.000 18.48 0.00 0.00 3.20 F
1217 1244 0.386476 TCTTCGTAGTGCGTTGTGGT 59.614 50.000 0.00 0.00 42.13 4.16 F
1218 1245 0.506932 CTTCGTAGTGCGTTGTGGTG 59.493 55.000 0.00 0.00 42.13 4.17 F
1445 1524 1.066454 AGTGGTTACGTTGCAAAAGGC 59.934 47.619 0.00 0.00 45.13 4.35 F
1467 1546 1.189752 AGAGAATCAAGGCGAGCAGA 58.810 50.000 0.00 0.00 37.82 4.26 F
2749 2854 1.302832 GGTGTTAGGCTGCTGCTGT 60.303 57.895 15.64 5.93 39.59 4.40 F
3746 3980 0.109873 GCATCAGCACACAAGTCTGC 60.110 55.000 0.00 0.00 41.58 4.26 F
3867 4102 1.213296 TTCCCCTCCTGATGTAAGCC 58.787 55.000 0.00 0.00 0.00 4.35 F
4986 5229 1.312815 AGCCACTGTCTTGAACTTGC 58.687 50.000 0.00 0.00 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1842 1926 0.741915 GTGTTTTTCCCAGCGGTGAA 59.258 50.000 17.83 0.00 0.00 3.18 R
2735 2840 0.393402 CCATGACAGCAGCAGCCTAA 60.393 55.000 0.00 0.00 43.56 2.69 R
3024 3131 3.004524 GGAATTTCAGAGCTGATGCCATC 59.995 47.826 0.37 0.00 39.64 3.51 R
3199 3306 5.675684 TGCAACCTGTAATAGATGTCAGA 57.324 39.130 0.00 0.00 0.00 3.27 R
3218 3325 3.062122 TCATCATGCAGAAGACTTGCA 57.938 42.857 4.35 4.35 43.04 4.08 R
3352 3467 6.681729 TTGTAGTTCTTAATGTGAGGACCT 57.318 37.500 0.00 0.00 0.00 3.85 R
3892 4127 0.037590 TAGCAAACAGGACCGCCATT 59.962 50.000 0.00 0.00 36.29 3.16 R
4986 5229 1.077930 CTGTCTGGCATGAGGGTGG 60.078 63.158 0.00 0.00 0.00 4.61 R
5831 6416 0.400594 TCGTCACTGTCTGGGAGAGA 59.599 55.000 0.00 0.00 0.00 3.10 R
5966 6551 0.034896 CCAAGCGGAACACTACACCT 59.965 55.000 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 4.044336 ACACCAACATCAAACACACATG 57.956 40.909 0.00 0.00 0.00 3.21
248 249 0.476808 TAAGGGAGGGGTTGGCTTCA 60.477 55.000 0.00 0.00 0.00 3.02
433 434 3.889134 CTGTGCAGCGCCCAAGAGA 62.889 63.158 2.29 0.00 0.00 3.10
437 438 1.329913 TGCAGCGCCCAAGAGATAGA 61.330 55.000 2.29 0.00 0.00 1.98
481 482 1.365633 CCTAGCTCTTAGGCGCTGG 59.634 63.158 7.64 0.00 42.50 4.85
482 483 1.365633 CTAGCTCTTAGGCGCTGGG 59.634 63.158 7.64 0.00 37.05 4.45
483 484 2.707529 CTAGCTCTTAGGCGCTGGGC 62.708 65.000 7.64 8.35 37.05 5.36
494 495 3.133464 GCTGGGCGCTGCACATTA 61.133 61.111 24.56 0.00 42.76 1.90
495 496 2.793946 CTGGGCGCTGCACATTAC 59.206 61.111 7.64 0.00 42.76 1.89
496 497 2.033294 TGGGCGCTGCACATTACA 59.967 55.556 7.64 0.00 36.87 2.41
497 498 1.985447 CTGGGCGCTGCACATTACAG 61.985 60.000 7.64 0.00 42.76 2.74
498 499 2.764314 GGGCGCTGCACATTACAGG 61.764 63.158 7.64 0.00 35.62 4.00
499 500 2.040544 GGCGCTGCACATTACAGGT 61.041 57.895 7.64 0.00 35.62 4.00
500 501 1.135315 GCGCTGCACATTACAGGTG 59.865 57.895 0.00 0.00 39.25 4.00
501 502 1.577328 GCGCTGCACATTACAGGTGT 61.577 55.000 0.00 0.00 38.51 4.16
503 504 1.238439 GCTGCACATTACAGGTGTGT 58.762 50.000 7.92 0.00 46.59 3.72
504 505 1.069022 GCTGCACATTACAGGTGTGTG 60.069 52.381 12.53 12.53 46.59 3.82
505 506 1.536766 CTGCACATTACAGGTGTGTGG 59.463 52.381 16.29 0.00 46.59 4.17
506 507 0.240945 GCACATTACAGGTGTGTGGC 59.759 55.000 16.29 8.79 46.59 5.01
507 508 0.516877 CACATTACAGGTGTGTGGCG 59.483 55.000 10.21 0.00 41.48 5.69
508 509 1.234615 ACATTACAGGTGTGTGGCGC 61.235 55.000 0.00 0.00 37.52 6.53
528 529 0.033228 CTAGCTCTTAGGCGCTGCAT 59.967 55.000 7.64 0.00 37.05 3.96
698 699 8.237811 ACTAGGTCAGTTTGTGATTTGATTTT 57.762 30.769 0.00 0.00 37.56 1.82
736 737 3.831323 TGTGATTTCTGCCCTTTGAAGA 58.169 40.909 0.00 0.00 0.00 2.87
742 743 4.853924 TTCTGCCCTTTGAAGATGAAAC 57.146 40.909 0.00 0.00 0.00 2.78
743 744 4.104383 TCTGCCCTTTGAAGATGAAACT 57.896 40.909 0.00 0.00 0.00 2.66
744 745 3.822735 TCTGCCCTTTGAAGATGAAACTG 59.177 43.478 0.00 0.00 0.00 3.16
749 751 2.686558 TTGAAGATGAAACTGCGCAC 57.313 45.000 5.66 0.00 0.00 5.34
772 776 3.059287 ACGCAAGGGAGAAGAGTCT 57.941 52.632 0.00 0.00 46.39 3.24
999 1023 0.108585 CCCGGGAGAGAGAGAGAGAG 59.891 65.000 18.48 0.00 0.00 3.20
1101 1128 2.820845 GAGGCTCTTCTCCTCCTCC 58.179 63.158 7.40 0.00 43.32 4.30
1186 1213 0.810031 CGCATTAACCTCCCGTCCTG 60.810 60.000 0.00 0.00 0.00 3.86
1188 1215 0.463833 CATTAACCTCCCGTCCTGGC 60.464 60.000 0.00 0.00 35.87 4.85
1192 1219 4.475444 CCTCCCGTCCTGGCCCTA 62.475 72.222 0.00 0.00 35.87 3.53
1204 1231 3.459063 GCCCTAGGCGGTCTTCGT 61.459 66.667 2.05 0.00 39.62 3.85
1206 1233 2.031360 CCCTAGGCGGTCTTCGTAG 58.969 63.158 2.05 0.00 41.72 3.51
1207 1234 0.750911 CCCTAGGCGGTCTTCGTAGT 60.751 60.000 2.05 0.00 41.72 2.73
1210 1237 1.985447 TAGGCGGTCTTCGTAGTGCG 61.985 60.000 0.00 0.00 41.72 5.34
1212 1239 1.731969 GCGGTCTTCGTAGTGCGTT 60.732 57.895 0.00 0.00 42.13 4.84
1213 1240 1.941476 GCGGTCTTCGTAGTGCGTTG 61.941 60.000 0.00 0.00 42.13 4.10
1215 1242 0.782384 GGTCTTCGTAGTGCGTTGTG 59.218 55.000 0.00 0.00 42.13 3.33
1217 1244 0.386476 TCTTCGTAGTGCGTTGTGGT 59.614 50.000 0.00 0.00 42.13 4.16
1218 1245 0.506932 CTTCGTAGTGCGTTGTGGTG 59.493 55.000 0.00 0.00 42.13 4.17
1221 1248 1.597027 GTAGTGCGTTGTGGTGCCT 60.597 57.895 0.00 0.00 0.00 4.75
1222 1249 1.301401 TAGTGCGTTGTGGTGCCTC 60.301 57.895 0.00 0.00 0.00 4.70
1226 1253 3.716006 CGTTGTGGTGCCTCGCTG 61.716 66.667 0.00 0.00 0.00 5.18
1227 1254 2.591715 GTTGTGGTGCCTCGCTGT 60.592 61.111 0.00 0.00 0.00 4.40
1228 1255 2.280797 TTGTGGTGCCTCGCTGTC 60.281 61.111 0.00 0.00 0.00 3.51
1229 1256 4.662961 TGTGGTGCCTCGCTGTCG 62.663 66.667 0.00 0.00 0.00 4.35
1230 1257 4.664677 GTGGTGCCTCGCTGTCGT 62.665 66.667 0.00 0.00 36.96 4.34
1231 1258 4.357947 TGGTGCCTCGCTGTCGTC 62.358 66.667 0.00 0.00 36.96 4.20
1236 1302 2.691771 GCCTCGCTGTCGTCTCTGA 61.692 63.158 0.00 0.00 36.96 3.27
1245 1311 2.681778 CGTCTCTGACCCTGGCCT 60.682 66.667 3.32 0.00 0.00 5.19
1306 1376 2.035449 TGTATATGCCACCGACTAGTGC 59.965 50.000 0.00 0.00 36.38 4.40
1310 1380 2.973899 CCACCGACTAGTGCAGCT 59.026 61.111 0.00 0.00 36.38 4.24
1351 1421 2.092538 AGTCATGCTCCTAGCTGCAAAT 60.093 45.455 11.02 0.00 42.97 2.32
1378 1448 1.996898 CGCGCACACTAATTTGTCCTA 59.003 47.619 8.75 0.00 0.00 2.94
1379 1449 2.413796 CGCGCACACTAATTTGTCCTAA 59.586 45.455 8.75 0.00 0.00 2.69
1383 1453 4.142902 CGCACACTAATTTGTCCTAACTGG 60.143 45.833 0.00 0.00 37.10 4.00
1407 1483 8.296713 TGGTGATTTTGAGTTACTGATTTTAGC 58.703 33.333 0.00 0.00 0.00 3.09
1413 1489 6.706055 TGAGTTACTGATTTTAGCAAGTCG 57.294 37.500 0.00 0.00 29.65 4.18
1434 1513 2.540515 CTCAGGTGCATAGTGGTTACG 58.459 52.381 0.00 0.00 0.00 3.18
1445 1524 1.066454 AGTGGTTACGTTGCAAAAGGC 59.934 47.619 0.00 0.00 45.13 4.35
1467 1546 1.189752 AGAGAATCAAGGCGAGCAGA 58.810 50.000 0.00 0.00 37.82 4.26
1542 1626 4.034742 GTGTCCACGTGTTATTGAACTGTT 59.965 41.667 15.65 0.00 36.45 3.16
1578 1662 5.757320 CCTTCTGTTATGCTGATAGGTTCTG 59.243 44.000 0.00 0.00 0.00 3.02
1814 1898 7.084268 ACATCTAGAGCCCAGCTTAATAAAT 57.916 36.000 0.00 0.00 39.88 1.40
1822 1906 9.121658 AGAGCCCAGCTTAATAAATAAACTAAC 57.878 33.333 0.00 0.00 39.88 2.34
1841 1925 7.170393 ACTAACTGTGCATCACTATTCACTA 57.830 36.000 0.00 0.00 35.11 2.74
1842 1926 7.786030 ACTAACTGTGCATCACTATTCACTAT 58.214 34.615 0.00 0.00 35.11 2.12
1988 2079 1.777878 ACCAACCCATAGTTCCACACA 59.222 47.619 0.00 0.00 36.18 3.72
1998 2089 5.396324 CCATAGTTCCACACATTACCTGCTA 60.396 44.000 0.00 0.00 0.00 3.49
1999 2090 3.939066 AGTTCCACACATTACCTGCTAC 58.061 45.455 0.00 0.00 0.00 3.58
2108 2199 5.482908 TCTTCTTTGATAACTCTGCCTGTC 58.517 41.667 0.00 0.00 0.00 3.51
2395 2487 8.010733 ACAAATGTATGTTTGATATTCCTGGG 57.989 34.615 6.39 0.00 40.64 4.45
2579 2684 9.383519 CTAATCATGGAAAGTGTAGTGTATTGT 57.616 33.333 0.00 0.00 0.00 2.71
2623 2728 1.425066 TCTTGCTCCCAGGAACAACAT 59.575 47.619 0.00 0.00 0.00 2.71
2734 2839 3.244009 ACTCATGTCAACTCTCTGTGGTG 60.244 47.826 0.00 0.00 0.00 4.17
2735 2840 2.700371 TCATGTCAACTCTCTGTGGTGT 59.300 45.455 0.00 0.00 0.00 4.16
2749 2854 1.302832 GGTGTTAGGCTGCTGCTGT 60.303 57.895 15.64 5.93 39.59 4.40
2816 2921 5.867174 GTCAAACATACCCAATTTGCCTAAC 59.133 40.000 0.00 0.00 34.09 2.34
3024 3131 3.929094 ACATTGGCAGGTTTTATTGCTG 58.071 40.909 0.00 0.00 40.15 4.41
3531 3762 5.758296 GGCATCGGTATTCATGAAACTCTTA 59.242 40.000 13.09 0.00 0.00 2.10
3650 3881 8.520835 TTTATGCTAAGATAGATTGCTGTACG 57.479 34.615 0.00 0.00 0.00 3.67
3713 3944 6.150976 TGGTTTTGATTTATGCTGGTCACTAG 59.849 38.462 0.00 0.00 0.00 2.57
3746 3980 0.109873 GCATCAGCACACAAGTCTGC 60.110 55.000 0.00 0.00 41.58 4.26
3820 4054 9.804758 ATTTCTTTACTCCTATAAAGACGTCAG 57.195 33.333 19.50 5.56 46.12 3.51
3867 4102 1.213296 TTCCCCTCCTGATGTAAGCC 58.787 55.000 0.00 0.00 0.00 4.35
3892 4127 4.339872 AGATTTGTTGCAAATGCCTGAA 57.660 36.364 11.24 0.00 41.18 3.02
3939 4174 4.842380 AGTAGGGTAGCCTGACTTGTTTTA 59.158 41.667 23.91 0.00 0.00 1.52
3944 4179 5.066505 GGGTAGCCTGACTTGTTTTATCATG 59.933 44.000 2.95 0.00 0.00 3.07
3965 4200 2.166254 GGCAACATATTGGGTGGTCTTG 59.834 50.000 0.00 0.00 36.23 3.02
4113 4348 4.009675 TCAAGATTGTCCTGTATGGTTGC 58.990 43.478 0.00 0.00 37.07 4.17
4154 4389 9.383519 CTCTTTCTTGCAAGTCTTATATGGTAA 57.616 33.333 25.19 5.59 0.00 2.85
4199 4434 6.493802 CCTAACTTATGCAGGTGGTATCTCTA 59.506 42.308 0.00 0.00 0.00 2.43
4541 4778 2.745698 CAGGGCACACTGCTGAGA 59.254 61.111 0.00 0.00 44.28 3.27
4639 4876 7.337942 CCTTCTGATTTAATCCTGTAAAGCACT 59.662 37.037 2.22 0.00 35.15 4.40
4720 4957 2.373169 TGATTTCACAGGAACCTCTGCT 59.627 45.455 0.00 0.00 38.26 4.24
4941 5184 2.522060 GACTGCTTGTCTGACACGG 58.478 57.895 10.56 7.78 42.21 4.94
4986 5229 1.312815 AGCCACTGTCTTGAACTTGC 58.687 50.000 0.00 0.00 0.00 4.01
5040 5283 6.757237 TCACATGAAAAACTTGCATAATGGT 58.243 32.000 0.00 0.00 0.00 3.55
5069 5312 4.842531 TTCAGCCTTCATTGACCTATCA 57.157 40.909 0.00 0.00 0.00 2.15
5130 5478 9.186323 CTATTGACAACGTAGATAAGAAGGATG 57.814 37.037 0.00 0.00 0.00 3.51
5489 6041 7.933577 TGAAATTACCAGCATATCCAGTTAGAG 59.066 37.037 0.00 0.00 0.00 2.43
5506 6058 2.637165 AGAGGGTCCTCAAACAAGGAT 58.363 47.619 18.17 0.00 46.90 3.24
5507 6059 2.307098 AGAGGGTCCTCAAACAAGGATG 59.693 50.000 18.17 0.00 46.90 3.51
5508 6060 2.040412 GAGGGTCCTCAAACAAGGATGT 59.960 50.000 11.85 0.00 46.90 3.06
5509 6061 2.162681 GGGTCCTCAAACAAGGATGTG 58.837 52.381 0.00 0.00 46.90 3.21
5704 6289 4.469586 TGGATGCTGTCTTGACCTGTATTA 59.530 41.667 0.00 0.00 0.00 0.98
5717 6302 7.290110 TGACCTGTATTATGACCTGACATAG 57.710 40.000 0.00 0.00 34.80 2.23
5831 6416 0.676466 TGCGGTCAAAGCCATCGAAT 60.676 50.000 0.00 0.00 0.00 3.34
5839 6424 1.500474 AAGCCATCGAATCTCTCCCA 58.500 50.000 0.00 0.00 0.00 4.37
5845 6430 2.516227 TCGAATCTCTCCCAGACAGT 57.484 50.000 0.00 0.00 32.26 3.55
5908 6493 5.653769 TGATATCACACAGAGAGTCATCACA 59.346 40.000 0.00 0.00 0.00 3.58
5921 6506 5.645497 AGAGTCATCACAAGGACAAAATAGC 59.355 40.000 0.00 0.00 38.66 2.97
5923 6508 5.948162 AGTCATCACAAGGACAAAATAGCAT 59.052 36.000 0.00 0.00 38.66 3.79
5935 6520 9.060347 AGGACAAAATAGCATGATTATACACAG 57.940 33.333 0.00 0.00 0.00 3.66
5956 6541 1.069358 GGTGGAGAAGATAAGGCGGAG 59.931 57.143 0.00 0.00 0.00 4.63
5980 6565 0.949105 GCCACAGGTGTAGTGTTCCG 60.949 60.000 0.00 0.00 35.24 4.30
6029 6614 0.179103 GCATTCTTTCCATTGCCCGG 60.179 55.000 0.00 0.00 0.00 5.73
6137 6722 4.635765 GTGGCAGCAGAATCTGTGTATTAA 59.364 41.667 12.29 0.00 36.49 1.40
6158 6743 0.378257 ATCACGATTGGCGATTGCAC 59.622 50.000 7.38 0.00 45.35 4.57
6159 6744 1.580893 CACGATTGGCGATTGCACG 60.581 57.895 7.38 9.05 45.35 5.34
6160 6745 1.739929 ACGATTGGCGATTGCACGA 60.740 52.632 7.38 0.00 45.35 4.35
6161 6746 1.089481 ACGATTGGCGATTGCACGAT 61.089 50.000 7.38 1.70 45.35 3.73
6162 6747 0.655337 CGATTGGCGATTGCACGATG 60.655 55.000 7.38 0.00 45.35 3.84
6219 6806 8.929746 CGAAGTATGTAACACTATATACGAGGA 58.070 37.037 0.00 0.00 37.25 3.71
6230 6817 8.975295 ACACTATATACGAGGAAAAAGTAACCT 58.025 33.333 0.00 0.00 36.68 3.50
6231 6818 9.245962 CACTATATACGAGGAAAAAGTAACCTG 57.754 37.037 0.00 0.00 33.89 4.00
6247 6838 3.782889 ACCTGCTTGTGTTGAGAAAAC 57.217 42.857 0.00 0.00 0.00 2.43
6259 6850 4.952957 TGTTGAGAAAACCATGTTCTTCCA 59.047 37.500 0.00 0.00 35.46 3.53
6270 6861 5.195940 CCATGTTCTTCCATATGTTGACCT 58.804 41.667 1.24 0.00 0.00 3.85
6311 6905 7.450323 TCTTTACCCTTAATTTTCCTGAACTGG 59.550 37.037 0.00 0.00 0.00 4.00
6331 6926 3.381590 TGGACTACATCGTCTCATCTTGG 59.618 47.826 0.00 0.00 34.38 3.61
6391 6986 5.404946 CAAATGTGTTCAATCCTCCATGAC 58.595 41.667 0.00 0.00 0.00 3.06
6410 7005 7.015098 TCCATGACAAAACATTACAGTGGAAAT 59.985 33.333 0.00 0.00 0.00 2.17
6453 7076 4.773674 TCATCAATGGGCAACTTCAAATCT 59.226 37.500 0.00 0.00 0.00 2.40
6455 7078 6.436847 TCATCAATGGGCAACTTCAAATCTAA 59.563 34.615 0.00 0.00 0.00 2.10
6480 7103 7.286313 ACTTCTTTCTCTTCTTTTGAGTGGAT 58.714 34.615 0.00 0.00 33.59 3.41
6484 7107 4.899502 TCTCTTCTTTTGAGTGGATGACC 58.100 43.478 0.00 0.00 33.59 4.02
6517 7140 3.099141 ACCTAATGTGGGCCTTCAAATG 58.901 45.455 4.53 0.00 0.00 2.32
6518 7141 3.245586 ACCTAATGTGGGCCTTCAAATGA 60.246 43.478 4.53 0.00 0.00 2.57
6519 7142 3.962718 CCTAATGTGGGCCTTCAAATGAT 59.037 43.478 4.53 0.00 0.00 2.45
6520 7143 4.038402 CCTAATGTGGGCCTTCAAATGATC 59.962 45.833 4.53 0.00 0.00 2.92
6521 7144 2.601240 TGTGGGCCTTCAAATGATCA 57.399 45.000 4.53 0.00 0.00 2.92
6522 7145 2.886913 TGTGGGCCTTCAAATGATCAA 58.113 42.857 4.53 0.00 0.00 2.57
6523 7146 3.237746 TGTGGGCCTTCAAATGATCAAA 58.762 40.909 4.53 0.00 0.00 2.69
6524 7147 3.839490 TGTGGGCCTTCAAATGATCAAAT 59.161 39.130 4.53 0.00 0.00 2.32
6697 7323 2.107750 ATCGCCTCCTGCATCACG 59.892 61.111 0.00 0.00 41.33 4.35
6781 7407 2.555199 GAGGACGGCGAGTAGTAGTAA 58.445 52.381 16.62 0.00 0.00 2.24
6784 7410 2.009774 GACGGCGAGTAGTAGTAACCA 58.990 52.381 16.62 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 4.466726 CCATAGTATGCTAGGGTTAGGGTC 59.533 50.000 12.80 0.00 42.47 4.46
248 249 3.687698 CGGAGTATTTGACCGTGGATTTT 59.312 43.478 0.00 0.00 41.47 1.82
433 434 2.168521 ACCTGTAATGTGCAGCGTCTAT 59.831 45.455 0.00 0.00 32.93 1.98
437 438 0.250295 ACACCTGTAATGTGCAGCGT 60.250 50.000 0.00 0.00 35.75 5.07
480 481 2.764314 CCTGTAATGTGCAGCGCCC 61.764 63.158 2.29 0.00 32.93 6.13
481 482 2.040544 ACCTGTAATGTGCAGCGCC 61.041 57.895 2.29 0.00 32.93 6.53
482 483 1.135315 CACCTGTAATGTGCAGCGC 59.865 57.895 0.00 0.00 32.93 5.92
483 484 0.166597 CACACCTGTAATGTGCAGCG 59.833 55.000 0.00 0.00 40.94 5.18
489 490 1.234615 GCGCCACACACCTGTAATGT 61.235 55.000 0.00 0.00 0.00 2.71
490 491 1.501741 GCGCCACACACCTGTAATG 59.498 57.895 0.00 0.00 0.00 1.90
491 492 1.674322 GGCGCCACACACCTGTAAT 60.674 57.895 24.80 0.00 0.00 1.89
492 493 1.473497 TAGGCGCCACACACCTGTAA 61.473 55.000 31.54 0.00 34.92 2.41
493 494 1.884075 CTAGGCGCCACACACCTGTA 61.884 60.000 31.54 7.71 34.92 2.74
494 495 3.238497 TAGGCGCCACACACCTGT 61.238 61.111 31.54 6.76 34.92 4.00
495 496 2.434884 CTAGGCGCCACACACCTG 60.435 66.667 31.54 4.92 34.92 4.00
496 497 4.394712 GCTAGGCGCCACACACCT 62.395 66.667 31.54 8.51 37.61 4.00
497 498 4.394712 AGCTAGGCGCCACACACC 62.395 66.667 31.54 10.29 40.39 4.16
498 499 2.788191 AAGAGCTAGGCGCCACACAC 62.788 60.000 31.54 16.56 40.39 3.82
499 500 1.254975 TAAGAGCTAGGCGCCACACA 61.255 55.000 31.54 9.67 40.39 3.72
500 501 0.528684 CTAAGAGCTAGGCGCCACAC 60.529 60.000 31.54 17.11 40.39 3.82
501 502 1.676678 CCTAAGAGCTAGGCGCCACA 61.677 60.000 31.54 15.42 41.02 4.17
502 503 1.068250 CCTAAGAGCTAGGCGCCAC 59.932 63.158 31.54 17.93 41.02 5.01
503 504 3.538614 CCTAAGAGCTAGGCGCCA 58.461 61.111 31.54 14.00 41.02 5.69
512 513 0.948141 CCTATGCAGCGCCTAAGAGC 60.948 60.000 2.29 0.00 39.42 4.09
513 514 0.390860 ACCTATGCAGCGCCTAAGAG 59.609 55.000 2.29 0.00 0.00 2.85
514 515 0.104855 CACCTATGCAGCGCCTAAGA 59.895 55.000 2.29 0.00 0.00 2.10
515 516 2.609825 CACCTATGCAGCGCCTAAG 58.390 57.895 2.29 0.00 0.00 2.18
516 517 4.855105 CACCTATGCAGCGCCTAA 57.145 55.556 2.29 0.00 0.00 2.69
571 572 1.884075 TTAGGCGTCGCACATCCTGT 61.884 55.000 20.50 0.00 0.00 4.00
675 676 7.437862 GCAAAAATCAAATCACAAACTGACCTA 59.562 33.333 0.00 0.00 0.00 3.08
698 699 3.106827 TCACATATCTGACCTCAGGCAA 58.893 45.455 0.00 0.00 43.91 4.52
736 737 1.958323 TGCATGTGCGCAGTTTCAT 59.042 47.368 12.22 8.07 45.83 2.57
749 751 0.674581 TCTTCTCCCTTGCGTGCATG 60.675 55.000 0.09 0.09 0.00 4.06
772 776 2.267642 CAGGAAATCGCCACGGGA 59.732 61.111 0.00 0.00 0.00 5.14
981 1005 1.128200 TCTCTCTCTCTCTCTCCCGG 58.872 60.000 0.00 0.00 0.00 5.73
988 1012 2.423373 GCCAGGACATCTCTCTCTCTCT 60.423 54.545 0.00 0.00 0.00 3.10
1137 1164 1.278127 GGGACCTTGTTCCGAATCTGA 59.722 52.381 0.00 0.00 36.38 3.27
1188 1215 0.750911 ACTACGAAGACCGCCTAGGG 60.751 60.000 11.72 0.14 46.96 3.53
1192 1219 2.572284 GCACTACGAAGACCGCCT 59.428 61.111 0.00 0.00 43.32 5.52
1204 1231 1.301401 GAGGCACCACAACGCACTA 60.301 57.895 0.00 0.00 0.00 2.74
1206 1233 4.012895 CGAGGCACCACAACGCAC 62.013 66.667 0.00 0.00 0.00 5.34
1210 1237 2.591715 ACAGCGAGGCACCACAAC 60.592 61.111 0.00 0.00 0.00 3.32
1212 1239 4.662961 CGACAGCGAGGCACCACA 62.663 66.667 0.00 0.00 40.82 4.17
1213 1240 4.664677 ACGACAGCGAGGCACCAC 62.665 66.667 0.00 0.00 41.64 4.16
1215 1242 3.973267 GAGACGACAGCGAGGCACC 62.973 68.421 0.00 0.00 41.64 5.01
1217 1244 2.673341 AGAGACGACAGCGAGGCA 60.673 61.111 0.00 0.00 41.64 4.75
1218 1245 2.202544 CAGAGACGACAGCGAGGC 60.203 66.667 0.00 0.00 41.64 4.70
1221 1248 2.333417 GGGTCAGAGACGACAGCGA 61.333 63.158 0.00 0.00 41.64 4.93
1222 1249 2.179517 GGGTCAGAGACGACAGCG 59.820 66.667 0.00 0.00 44.79 5.18
1226 1253 2.574399 GCCAGGGTCAGAGACGAC 59.426 66.667 0.00 0.00 32.65 4.34
1227 1254 2.680352 GGCCAGGGTCAGAGACGA 60.680 66.667 0.00 0.00 32.65 4.20
1228 1255 2.681778 AGGCCAGGGTCAGAGACG 60.682 66.667 5.01 0.00 32.65 4.18
1229 1256 1.893919 GACAGGCCAGGGTCAGAGAC 61.894 65.000 5.01 0.00 34.22 3.36
1230 1257 1.610673 GACAGGCCAGGGTCAGAGA 60.611 63.158 5.01 0.00 34.22 3.10
1231 1258 2.664081 GGACAGGCCAGGGTCAGAG 61.664 68.421 19.69 0.00 35.74 3.35
1310 1380 3.390521 ACGGGATTCAGCCGCAGA 61.391 61.111 0.00 0.00 0.00 4.26
1334 1404 1.407979 GCAATTTGCAGCTAGGAGCAT 59.592 47.619 16.35 0.00 44.26 3.79
1360 1430 4.142902 CCAGTTAGGACAAATTAGTGTGCG 60.143 45.833 0.00 0.00 43.94 5.34
1378 1448 7.823745 AATCAGTAACTCAAAATCACCAGTT 57.176 32.000 0.00 0.00 33.63 3.16
1379 1449 7.823745 AAATCAGTAACTCAAAATCACCAGT 57.176 32.000 0.00 0.00 0.00 4.00
1383 1453 9.677567 TTGCTAAAATCAGTAACTCAAAATCAC 57.322 29.630 0.00 0.00 0.00 3.06
1407 1483 1.284657 CTATGCACCTGAGCGACTTG 58.715 55.000 0.00 0.00 37.31 3.16
1413 1489 2.280628 GTAACCACTATGCACCTGAGC 58.719 52.381 0.00 0.00 0.00 4.26
1419 1495 1.801771 TGCAACGTAACCACTATGCAC 59.198 47.619 3.31 0.00 38.32 4.57
1445 1524 2.079158 TGCTCGCCTTGATTCTCTTTG 58.921 47.619 0.00 0.00 0.00 2.77
1455 1534 3.309954 GGTTACTATTTCTGCTCGCCTTG 59.690 47.826 0.00 0.00 0.00 3.61
1467 1546 5.529800 ACAACAACTTGAGCGGTTACTATTT 59.470 36.000 0.00 0.00 0.00 1.40
1542 1626 6.377996 AGCATAACAGAAGGCAAATACAATGA 59.622 34.615 0.00 0.00 0.00 2.57
1578 1662 6.370718 CACCTACTAATCCACACCAAAAGTAC 59.629 42.308 0.00 0.00 0.00 2.73
1814 1898 8.094548 AGTGAATAGTGATGCACAGTTAGTTTA 58.905 33.333 0.00 0.00 43.44 2.01
1822 1906 6.018425 GGTGAATAGTGAATAGTGATGCACAG 60.018 42.308 0.00 0.00 43.44 3.66
1841 1925 1.339929 GTGTTTTTCCCAGCGGTGAAT 59.660 47.619 17.83 0.00 0.00 2.57
1842 1926 0.741915 GTGTTTTTCCCAGCGGTGAA 59.258 50.000 17.83 0.00 0.00 3.18
1988 2079 4.913968 ACAATCCTATGGGTAGCAGGTAAT 59.086 41.667 0.00 0.00 0.00 1.89
1998 2089 1.559682 ACGCTTCACAATCCTATGGGT 59.440 47.619 0.00 0.00 0.00 4.51
1999 2090 2.332063 ACGCTTCACAATCCTATGGG 57.668 50.000 0.00 0.00 0.00 4.00
2108 2199 9.027129 CATGAAAACCAATGCATAGAATAACTG 57.973 33.333 0.00 0.00 0.00 3.16
2353 2445 6.744112 ACATTTGTCTGATAAAGCGGAAAAA 58.256 32.000 5.81 0.00 35.46 1.94
2356 2448 6.597672 ACATACATTTGTCTGATAAAGCGGAA 59.402 34.615 5.81 0.00 0.00 4.30
2371 2463 6.925165 GCCCAGGAATATCAAACATACATTTG 59.075 38.462 0.00 0.00 40.32 2.32
2395 2487 1.527433 GAAGAACAACTGGCCAGGGC 61.527 60.000 35.42 18.93 41.06 5.19
2501 2606 8.680903 AGGATTTCAGCTGTTATTCATTGTTAG 58.319 33.333 14.67 0.00 0.00 2.34
2579 2684 7.506938 AGAAGAATTTTTCTCATCAGGGAACAA 59.493 33.333 5.43 0.00 39.61 2.83
2623 2728 4.527427 TCAGCAACCAATTCAAATGGATCA 59.473 37.500 0.00 0.00 40.56 2.92
2734 2839 0.731417 CATGACAGCAGCAGCCTAAC 59.269 55.000 0.00 0.00 43.56 2.34
2735 2840 0.393402 CCATGACAGCAGCAGCCTAA 60.393 55.000 0.00 0.00 43.56 2.69
2749 2854 5.867903 AAAGAAACATCCAAACACCATGA 57.132 34.783 0.00 0.00 0.00 3.07
2816 2921 5.246429 AGTTTAGGGACCTGAAAGTACTCAG 59.754 44.000 0.00 0.00 42.19 3.35
3024 3131 3.004524 GGAATTTCAGAGCTGATGCCATC 59.995 47.826 0.37 0.00 39.64 3.51
3194 3301 9.109393 GCAACCTGTAATAGATGTCAGATTAAA 57.891 33.333 0.00 0.00 0.00 1.52
3196 3303 7.791029 TGCAACCTGTAATAGATGTCAGATTA 58.209 34.615 0.00 0.00 0.00 1.75
3199 3306 5.675684 TGCAACCTGTAATAGATGTCAGA 57.324 39.130 0.00 0.00 0.00 3.27
3218 3325 3.062122 TCATCATGCAGAAGACTTGCA 57.938 42.857 4.35 4.35 43.04 4.08
3352 3467 6.681729 TTGTAGTTCTTAATGTGAGGACCT 57.318 37.500 0.00 0.00 0.00 3.85
3399 3629 7.765695 TTTACTGGAAGATCAAGCTTTTCAT 57.234 32.000 10.06 0.00 37.43 2.57
3479 3710 1.257743 TCTGACTGCAGTACCTCCAC 58.742 55.000 21.73 5.88 42.84 4.02
3531 3762 3.450578 CAAAACAGAAAGCTGCACACAT 58.549 40.909 1.02 0.00 46.26 3.21
3630 3861 6.748198 GGATACGTACAGCAATCTATCTTAGC 59.252 42.308 0.00 0.00 0.00 3.09
3650 3881 9.884465 GCATCATTAAAACAATCTACAGGATAC 57.116 33.333 0.00 0.00 33.71 2.24
3713 3944 5.008316 TGTGCTGATGCTCATCAAACATATC 59.992 40.000 17.24 8.26 46.10 1.63
3820 4054 1.400494 GAACACACAACCACCACAGAC 59.600 52.381 0.00 0.00 0.00 3.51
3867 4102 4.090354 CAGGCATTTGCAACAAATCTAACG 59.910 41.667 0.00 0.00 44.36 3.18
3892 4127 0.037590 TAGCAAACAGGACCGCCATT 59.962 50.000 0.00 0.00 36.29 3.16
3897 4132 1.535462 CTTTGGTAGCAAACAGGACCG 59.465 52.381 15.83 1.44 34.49 4.79
3939 4174 2.967201 CCACCCAATATGTTGCCATGAT 59.033 45.455 0.00 0.00 33.90 2.45
3944 4179 2.143876 AGACCACCCAATATGTTGCC 57.856 50.000 0.00 0.00 33.90 4.52
3950 4185 8.502738 AGATATAACAACAAGACCACCCAATAT 58.497 33.333 0.00 0.00 0.00 1.28
3965 4200 7.761409 TCCAGCATTGAAACAGATATAACAAC 58.239 34.615 0.00 0.00 0.00 3.32
4087 4322 6.065976 ACCATACAGGACAATCTTGAATGA 57.934 37.500 0.00 0.00 41.22 2.57
4113 4348 3.006752 AGAAAGAGAGCAGGTCAGAACTG 59.993 47.826 11.56 11.56 38.95 3.16
4154 4389 8.695456 AGTTAGGTTGATCAATTGAAAGTTTGT 58.305 29.630 13.09 0.00 0.00 2.83
4541 4778 4.970662 ATTCGTATGCAAGCACTGAAAT 57.029 36.364 0.00 0.00 0.00 2.17
4639 4876 9.054922 TGCAATGATATCGAATTAATCAAGTCA 57.945 29.630 0.00 0.00 33.60 3.41
4720 4957 3.611025 AATGAACCCTTCCCAAGTGAA 57.389 42.857 0.00 0.00 0.00 3.18
4941 5184 3.813529 AATTACAGCAACACGAGCTTC 57.186 42.857 0.00 0.00 41.14 3.86
4986 5229 1.077930 CTGTCTGGCATGAGGGTGG 60.078 63.158 0.00 0.00 0.00 4.61
5040 5283 4.516698 GTCAATGAAGGCTGAAAGAGAACA 59.483 41.667 0.00 0.00 34.07 3.18
5130 5478 1.807142 GCAAGCAGTAGGGTTCAGAAC 59.193 52.381 4.52 4.52 34.30 3.01
5668 6253 9.294030 CAAGACAGCATCCATTCTTTTATTTAC 57.706 33.333 0.00 0.00 0.00 2.01
5704 6289 4.719026 ATGGATTGCTATGTCAGGTCAT 57.281 40.909 0.00 0.00 0.00 3.06
5831 6416 0.400594 TCGTCACTGTCTGGGAGAGA 59.599 55.000 0.00 0.00 0.00 3.10
5839 6424 4.219507 AGAACATCTTCATCGTCACTGTCT 59.780 41.667 0.00 0.00 0.00 3.41
5845 6430 6.165577 TGAAATCAGAACATCTTCATCGTCA 58.834 36.000 0.00 0.00 0.00 4.35
5908 6493 9.407380 TGTGTATAATCATGCTATTTTGTCCTT 57.593 29.630 0.00 0.00 0.00 3.36
5921 6506 5.551305 TCTCCACCCTGTGTATAATCATG 57.449 43.478 0.00 0.00 0.00 3.07
5923 6508 5.277250 TCTTCTCCACCCTGTGTATAATCA 58.723 41.667 0.00 0.00 0.00 2.57
5935 6520 0.106894 CCGCCTTATCTTCTCCACCC 59.893 60.000 0.00 0.00 0.00 4.61
5956 6541 0.865769 CACTACACCTGTGGCGAAAC 59.134 55.000 1.91 0.00 34.19 2.78
5966 6551 0.034896 CCAAGCGGAACACTACACCT 59.965 55.000 0.00 0.00 0.00 4.00
5980 6565 1.798223 GGCGACCAAAAATTTCCAAGC 59.202 47.619 0.00 0.00 0.00 4.01
5989 6574 1.698506 ATGACCAAGGCGACCAAAAA 58.301 45.000 0.00 0.00 0.00 1.94
5996 6581 0.810648 GAATGCAATGACCAAGGCGA 59.189 50.000 0.00 0.00 0.00 5.54
6029 6614 7.425606 AGTCTCATCAAATGTTACACAAAACC 58.574 34.615 0.00 0.00 0.00 3.27
6137 6722 2.224079 GTGCAATCGCCAATCGTGATAT 59.776 45.455 0.00 0.00 40.94 1.63
6158 6743 5.193663 ACAGTCTTATGATCAGGTCATCG 57.806 43.478 0.00 0.00 44.23 3.84
6159 6744 6.926272 GGTTACAGTCTTATGATCAGGTCATC 59.074 42.308 0.00 0.00 44.23 2.92
6161 6746 5.958380 AGGTTACAGTCTTATGATCAGGTCA 59.042 40.000 0.09 0.00 42.06 4.02
6162 6747 6.472686 AGGTTACAGTCTTATGATCAGGTC 57.527 41.667 0.09 0.00 0.00 3.85
6207 6794 8.142551 AGCAGGTTACTTTTTCCTCGTATATAG 58.857 37.037 0.00 0.00 0.00 1.31
6219 6806 5.417580 TCTCAACACAAGCAGGTTACTTTTT 59.582 36.000 0.00 0.00 0.00 1.94
6224 6811 4.893424 TTTCTCAACACAAGCAGGTTAC 57.107 40.909 0.00 0.00 0.00 2.50
6225 6812 4.097286 GGTTTTCTCAACACAAGCAGGTTA 59.903 41.667 0.00 0.00 0.00 2.85
6226 6813 3.119137 GGTTTTCTCAACACAAGCAGGTT 60.119 43.478 0.00 0.00 0.00 3.50
6228 6815 2.426738 TGGTTTTCTCAACACAAGCAGG 59.573 45.455 0.00 0.00 0.00 4.85
6230 6817 3.446873 ACATGGTTTTCTCAACACAAGCA 59.553 39.130 0.00 0.00 0.00 3.91
6231 6818 4.045636 ACATGGTTTTCTCAACACAAGC 57.954 40.909 0.00 0.00 0.00 4.01
6247 6838 5.195940 AGGTCAACATATGGAAGAACATGG 58.804 41.667 7.80 0.00 32.39 3.66
6311 6905 3.243569 CCCCAAGATGAGACGATGTAGTC 60.244 52.174 0.00 0.00 41.23 2.59
6331 6926 2.426842 ACAAAGCTCCTAGAATGCCC 57.573 50.000 0.00 0.00 0.00 5.36
6410 7005 9.850198 TTGATGATATGTCCAGATCAACATTTA 57.150 29.630 13.33 0.28 41.64 1.40
6453 7076 8.265055 TCCACTCAAAAGAAGAGAAAGAAGTTA 58.735 33.333 0.00 0.00 36.91 2.24
6455 7078 6.653989 TCCACTCAAAAGAAGAGAAAGAAGT 58.346 36.000 0.00 0.00 36.91 3.01
6480 7103 2.685106 AGGTCTCAACTCTCAGGTCA 57.315 50.000 0.00 0.00 0.00 4.02
6484 7107 4.382470 CCCACATTAGGTCTCAACTCTCAG 60.382 50.000 0.00 0.00 0.00 3.35
6517 7140 4.558898 GCAGAAGCATGATGGGATTTGATC 60.559 45.833 0.00 0.00 41.58 2.92
6518 7141 3.321111 GCAGAAGCATGATGGGATTTGAT 59.679 43.478 0.00 0.00 41.58 2.57
6519 7142 2.691526 GCAGAAGCATGATGGGATTTGA 59.308 45.455 0.00 0.00 41.58 2.69
6520 7143 2.223971 GGCAGAAGCATGATGGGATTTG 60.224 50.000 0.00 0.00 44.61 2.32
6521 7144 2.037144 GGCAGAAGCATGATGGGATTT 58.963 47.619 0.00 0.00 44.61 2.17
6522 7145 1.063492 TGGCAGAAGCATGATGGGATT 60.063 47.619 0.00 0.00 44.61 3.01
6523 7146 0.554305 TGGCAGAAGCATGATGGGAT 59.446 50.000 0.00 0.00 44.61 3.85
6524 7147 0.394762 GTGGCAGAAGCATGATGGGA 60.395 55.000 0.00 0.00 44.61 4.37
6781 7407 4.203076 GCCGCCGACGACTATGGT 62.203 66.667 0.00 0.00 43.93 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.