Multiple sequence alignment - TraesCS7A01G459400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G459400 chr7A 100.000 5295 0 0 1 5295 654561530 654566824 0.000000e+00 9779.0
1 TraesCS7A01G459400 chr7A 87.097 155 18 2 1977 2131 91597500 91597652 1.960000e-39 174.0
2 TraesCS7A01G459400 chr7B 90.332 2079 129 43 2364 4388 621918448 621920508 0.000000e+00 2660.0
3 TraesCS7A01G459400 chr7B 91.012 968 72 11 1254 2215 621917258 621918216 0.000000e+00 1291.0
4 TraesCS7A01G459400 chr7B 86.906 863 63 32 299 1146 621916357 621917184 0.000000e+00 922.0
5 TraesCS7A01G459400 chr7B 93.137 306 21 0 4990 5295 621921093 621921398 2.910000e-122 449.0
6 TraesCS7A01G459400 chr7B 88.235 391 18 12 4641 5031 621920735 621921097 4.870000e-120 442.0
7 TraesCS7A01G459400 chr7B 94.186 172 10 0 4388 4559 621920538 621920709 4.070000e-66 263.0
8 TraesCS7A01G459400 chr7B 87.692 130 11 4 1220 1346 72266086 72266213 4.270000e-31 147.0
9 TraesCS7A01G459400 chr7B 95.556 45 1 1 4455 4499 714311652 714311695 2.650000e-08 71.3
10 TraesCS7A01G459400 chr7D 89.606 2030 144 32 2394 4388 567670902 567672899 0.000000e+00 2518.0
11 TraesCS7A01G459400 chr7D 93.839 909 52 4 4388 5295 567672929 567673834 0.000000e+00 1365.0
12 TraesCS7A01G459400 chr7D 83.447 1317 107 57 308 1569 567668299 567669559 0.000000e+00 1122.0
13 TraesCS7A01G459400 chr7D 85.432 659 48 22 1579 2215 567669966 567670598 4.470000e-180 641.0
14 TraesCS7A01G459400 chr7D 86.310 168 19 4 1977 2144 509207101 509206938 4.210000e-41 180.0
15 TraesCS7A01G459400 chr7D 87.742 155 17 2 1977 2131 592036353 592036505 4.210000e-41 180.0
16 TraesCS7A01G459400 chr2B 78.215 381 70 11 3448 3822 378683251 378682878 1.150000e-56 231.0
17 TraesCS7A01G459400 chr2B 92.000 75 6 0 1072 1146 378688043 378687969 7.250000e-19 106.0
18 TraesCS7A01G459400 chr5D 87.742 155 17 2 1977 2131 92292596 92292748 4.210000e-41 180.0
19 TraesCS7A01G459400 chr5D 88.550 131 10 4 1220 1347 92292472 92292600 2.550000e-33 154.0
20 TraesCS7A01G459400 chr5A 87.097 155 18 2 1977 2131 460169156 460169308 1.960000e-39 174.0
21 TraesCS7A01G459400 chr5A 85.714 168 20 4 1977 2144 685423520 685423357 1.960000e-39 174.0
22 TraesCS7A01G459400 chr5A 89.313 131 9 4 1220 1347 460169032 460169160 5.490000e-35 159.0
23 TraesCS7A01G459400 chr5A 88.636 132 8 6 1220 1347 685423644 685423516 2.550000e-33 154.0
24 TraesCS7A01G459400 chr5A 81.679 131 23 1 5124 5254 640435430 640435301 2.020000e-19 108.0
25 TraesCS7A01G459400 chr5A 93.750 48 2 1 4455 4502 382114901 382114855 2.650000e-08 71.3
26 TraesCS7A01G459400 chr2D 85.714 168 20 4 1977 2144 104547964 104547801 1.960000e-39 174.0
27 TraesCS7A01G459400 chr2D 88.462 130 10 4 1222 1347 165662557 165662685 9.180000e-33 152.0
28 TraesCS7A01G459400 chr2D 93.333 75 5 0 1072 1146 201949232 201949158 1.560000e-20 111.0
29 TraesCS7A01G459400 chr5B 88.636 132 8 6 1220 1347 188590923 188590795 2.550000e-33 154.0
30 TraesCS7A01G459400 chr2A 87.786 131 11 4 1220 1347 22373419 22373291 1.190000e-31 148.0
31 TraesCS7A01G459400 chr2A 93.023 43 3 0 4460 4502 156370837 156370795 4.430000e-06 63.9
32 TraesCS7A01G459400 chr4A 82.143 140 20 3 5121 5256 10868050 10867912 1.210000e-21 115.0
33 TraesCS7A01G459400 chr3A 81.818 88 15 1 5118 5204 713913145 713913232 7.360000e-09 73.1
34 TraesCS7A01G459400 chr1A 89.583 48 5 0 5133 5180 357762118 357762071 1.590000e-05 62.1
35 TraesCS7A01G459400 chr6D 100.000 28 0 0 4475 4502 30282271 30282298 1.000000e-02 52.8
36 TraesCS7A01G459400 chr6A 100.000 28 0 0 4475 4502 32661289 32661262 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G459400 chr7A 654561530 654566824 5294 False 9779.0 9779 100.000000 1 5295 1 chr7A.!!$F2 5294
1 TraesCS7A01G459400 chr7B 621916357 621921398 5041 False 1004.5 2660 90.634667 299 5295 6 chr7B.!!$F3 4996
2 TraesCS7A01G459400 chr7D 567668299 567673834 5535 False 1411.5 2518 88.081000 308 5295 4 chr7D.!!$F2 4987

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
930 972 0.109689 GCACGCTCGTCACTCTTACT 60.110 55.0 0.00 0.0 0.00 2.24 F
1196 1261 0.174389 TGCTCTGCATCTTCGTCCTC 59.826 55.0 0.00 0.0 31.71 3.71 F
2362 3011 0.179142 TGTGTTTGGAACGACGACGA 60.179 50.0 15.32 0.0 42.66 4.20 F
3847 4535 0.320073 GCTTGCTGCCATTCTTGCAA 60.320 50.0 0.00 0.0 42.16 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2387 3036 0.036732 ATGCACCGTCAGACCATGTT 59.963 50.0 0.00 0.00 0.00 2.71 R
2392 3041 0.246635 AGTGTATGCACCGTCAGACC 59.753 55.0 10.59 0.00 46.35 3.85 R
4012 4710 0.034337 TTGGTTAGTCGGCTGTCACC 59.966 55.0 0.00 3.63 0.00 4.02 R
5070 5868 0.548682 AGGGCCACCTCACTCTCATT 60.549 55.0 6.18 0.00 46.95 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.124808 TGGGAAACTAATAATTGTTGTAACCC 57.875 34.615 15.53 15.53 32.46 4.11
27 28 7.178805 TGGGAAACTAATAATTGTTGTAACCCC 59.821 37.037 17.38 13.63 31.69 4.95
28 29 7.364056 GGGAAACTAATAATTGTTGTAACCCCC 60.364 40.741 0.00 0.00 0.00 5.40
29 30 6.762702 AACTAATAATTGTTGTAACCCCCG 57.237 37.500 0.00 0.00 0.00 5.73
30 31 4.641541 ACTAATAATTGTTGTAACCCCCGC 59.358 41.667 0.00 0.00 0.00 6.13
31 32 2.581216 TAATTGTTGTAACCCCCGCA 57.419 45.000 0.00 0.00 0.00 5.69
32 33 1.705873 AATTGTTGTAACCCCCGCAA 58.294 45.000 0.00 0.00 0.00 4.85
33 34 1.705873 ATTGTTGTAACCCCCGCAAA 58.294 45.000 0.00 0.00 0.00 3.68
34 35 1.481871 TTGTTGTAACCCCCGCAAAA 58.518 45.000 0.00 0.00 0.00 2.44
35 36 1.481871 TGTTGTAACCCCCGCAAAAA 58.518 45.000 0.00 0.00 0.00 1.94
60 61 7.684062 AATAAATTAATCGTCATGCAACTGC 57.316 32.000 0.00 0.00 42.50 4.40
71 72 3.806591 GCAACTGCATGCTTGACAT 57.193 47.368 20.33 0.00 43.06 3.06
101 102 5.975693 TTTTTGAAGGACCGCAATATCTT 57.024 34.783 4.05 0.00 0.00 2.40
102 103 4.963276 TTTGAAGGACCGCAATATCTTG 57.037 40.909 4.05 0.00 35.36 3.02
103 104 3.904800 TGAAGGACCGCAATATCTTGA 57.095 42.857 0.00 0.00 34.04 3.02
104 105 4.214986 TGAAGGACCGCAATATCTTGAA 57.785 40.909 0.00 0.00 34.04 2.69
105 106 4.584874 TGAAGGACCGCAATATCTTGAAA 58.415 39.130 0.00 0.00 34.04 2.69
106 107 4.394920 TGAAGGACCGCAATATCTTGAAAC 59.605 41.667 0.00 0.00 34.04 2.78
107 108 3.950397 AGGACCGCAATATCTTGAAACA 58.050 40.909 0.00 0.00 34.04 2.83
108 109 4.526970 AGGACCGCAATATCTTGAAACAT 58.473 39.130 0.00 0.00 34.04 2.71
109 110 4.949856 AGGACCGCAATATCTTGAAACATT 59.050 37.500 0.00 0.00 34.04 2.71
110 111 5.066505 AGGACCGCAATATCTTGAAACATTC 59.933 40.000 0.00 0.00 34.04 2.67
111 112 4.908736 ACCGCAATATCTTGAAACATTCG 58.091 39.130 0.00 0.00 34.04 3.34
112 113 3.725740 CCGCAATATCTTGAAACATTCGC 59.274 43.478 0.00 0.00 34.04 4.70
113 114 3.725740 CGCAATATCTTGAAACATTCGCC 59.274 43.478 0.00 0.00 34.04 5.54
114 115 4.671377 GCAATATCTTGAAACATTCGCCA 58.329 39.130 0.00 0.00 34.04 5.69
115 116 4.736793 GCAATATCTTGAAACATTCGCCAG 59.263 41.667 0.00 0.00 34.04 4.85
116 117 5.276270 CAATATCTTGAAACATTCGCCAGG 58.724 41.667 0.00 0.00 34.04 4.45
117 118 2.559698 TCTTGAAACATTCGCCAGGA 57.440 45.000 0.00 0.00 0.00 3.86
118 119 2.857483 TCTTGAAACATTCGCCAGGAA 58.143 42.857 0.00 0.00 39.42 3.36
119 120 3.420893 TCTTGAAACATTCGCCAGGAAT 58.579 40.909 0.00 0.00 46.29 3.01
126 127 1.972872 ATTCGCCAGGAATGGATGAC 58.027 50.000 0.00 0.00 43.70 3.06
127 128 0.617935 TTCGCCAGGAATGGATGACA 59.382 50.000 0.00 0.00 0.00 3.58
128 129 0.839277 TCGCCAGGAATGGATGACAT 59.161 50.000 0.00 0.00 43.07 3.06
138 139 3.940209 ATGGATGACATTTGCAAACGT 57.060 38.095 15.41 13.27 35.97 3.99
139 140 3.724508 TGGATGACATTTGCAAACGTT 57.275 38.095 15.41 0.00 0.00 3.99
140 141 4.052159 TGGATGACATTTGCAAACGTTT 57.948 36.364 15.41 7.96 0.00 3.60
141 142 4.437239 TGGATGACATTTGCAAACGTTTT 58.563 34.783 15.41 3.81 0.00 2.43
142 143 4.872691 TGGATGACATTTGCAAACGTTTTT 59.127 33.333 15.41 1.13 0.00 1.94
143 144 5.006165 TGGATGACATTTGCAAACGTTTTTC 59.994 36.000 15.41 10.26 0.00 2.29
144 145 4.849111 TGACATTTGCAAACGTTTTTCC 57.151 36.364 15.41 0.27 0.00 3.13
145 146 4.499183 TGACATTTGCAAACGTTTTTCCT 58.501 34.783 15.41 0.00 0.00 3.36
146 147 4.564769 TGACATTTGCAAACGTTTTTCCTC 59.435 37.500 15.41 0.00 0.00 3.71
147 148 4.499183 ACATTTGCAAACGTTTTTCCTCA 58.501 34.783 15.41 2.00 0.00 3.86
148 149 4.328712 ACATTTGCAAACGTTTTTCCTCAC 59.671 37.500 15.41 0.00 0.00 3.51
149 150 3.577649 TTGCAAACGTTTTTCCTCACA 57.422 38.095 11.66 0.00 0.00 3.58
150 151 3.577649 TGCAAACGTTTTTCCTCACAA 57.422 38.095 11.66 0.00 0.00 3.33
151 152 3.246619 TGCAAACGTTTTTCCTCACAAC 58.753 40.909 11.66 0.00 0.00 3.32
152 153 3.057174 TGCAAACGTTTTTCCTCACAACT 60.057 39.130 11.66 0.00 0.00 3.16
153 154 3.924073 GCAAACGTTTTTCCTCACAACTT 59.076 39.130 11.66 0.00 0.00 2.66
154 155 4.387559 GCAAACGTTTTTCCTCACAACTTT 59.612 37.500 11.66 0.00 0.00 2.66
155 156 5.573669 GCAAACGTTTTTCCTCACAACTTTA 59.426 36.000 11.66 0.00 0.00 1.85
156 157 6.089685 GCAAACGTTTTTCCTCACAACTTTAA 59.910 34.615 11.66 0.00 0.00 1.52
157 158 7.201487 GCAAACGTTTTTCCTCACAACTTTAAT 60.201 33.333 11.66 0.00 0.00 1.40
158 159 8.652463 CAAACGTTTTTCCTCACAACTTTAATT 58.348 29.630 11.66 0.00 0.00 1.40
159 160 7.749539 ACGTTTTTCCTCACAACTTTAATTG 57.250 32.000 0.00 0.00 35.59 2.32
160 161 7.540299 ACGTTTTTCCTCACAACTTTAATTGA 58.460 30.769 0.00 0.00 33.57 2.57
161 162 8.030106 ACGTTTTTCCTCACAACTTTAATTGAA 58.970 29.630 0.00 0.00 33.57 2.69
162 163 8.865001 CGTTTTTCCTCACAACTTTAATTGAAA 58.135 29.630 0.00 0.00 33.57 2.69
165 166 9.801873 TTTTCCTCACAACTTTAATTGAAAGAG 57.198 29.630 0.24 0.00 46.57 2.85
166 167 8.746052 TTCCTCACAACTTTAATTGAAAGAGA 57.254 30.769 0.24 0.00 46.57 3.10
167 168 8.924511 TCCTCACAACTTTAATTGAAAGAGAT 57.075 30.769 0.24 0.00 46.57 2.75
168 169 8.786898 TCCTCACAACTTTAATTGAAAGAGATG 58.213 33.333 0.24 0.28 46.57 2.90
169 170 8.571336 CCTCACAACTTTAATTGAAAGAGATGT 58.429 33.333 0.24 0.82 46.57 3.06
170 171 9.604626 CTCACAACTTTAATTGAAAGAGATGTC 57.395 33.333 0.24 0.00 46.57 3.06
171 172 9.119418 TCACAACTTTAATTGAAAGAGATGTCA 57.881 29.630 0.24 0.00 46.57 3.58
172 173 9.903682 CACAACTTTAATTGAAAGAGATGTCAT 57.096 29.630 0.24 0.00 46.57 3.06
180 181 8.961294 AATTGAAAGAGATGTCATTTTCTTCG 57.039 30.769 11.68 0.00 32.28 3.79
181 182 6.486253 TGAAAGAGATGTCATTTTCTTCGG 57.514 37.500 11.68 0.00 32.28 4.30
182 183 6.230472 TGAAAGAGATGTCATTTTCTTCGGA 58.770 36.000 11.68 1.14 32.28 4.55
183 184 6.710295 TGAAAGAGATGTCATTTTCTTCGGAA 59.290 34.615 11.68 0.00 32.28 4.30
184 185 6.734104 AAGAGATGTCATTTTCTTCGGAAG 57.266 37.500 11.54 11.54 35.19 3.46
185 186 6.042638 AGAGATGTCATTTTCTTCGGAAGA 57.957 37.500 16.19 16.19 35.19 2.87
186 187 6.105333 AGAGATGTCATTTTCTTCGGAAGAG 58.895 40.000 18.93 9.06 43.69 2.85
187 188 4.633565 AGATGTCATTTTCTTCGGAAGAGC 59.366 41.667 18.93 8.42 43.69 4.09
188 189 3.738982 TGTCATTTTCTTCGGAAGAGCA 58.261 40.909 18.93 11.08 43.69 4.26
189 190 4.326826 TGTCATTTTCTTCGGAAGAGCAT 58.673 39.130 18.93 12.68 43.69 3.79
190 191 5.487433 TGTCATTTTCTTCGGAAGAGCATA 58.513 37.500 18.93 3.35 43.69 3.14
191 192 5.937540 TGTCATTTTCTTCGGAAGAGCATAA 59.062 36.000 18.93 9.12 43.69 1.90
192 193 6.599244 TGTCATTTTCTTCGGAAGAGCATAAT 59.401 34.615 18.93 14.08 43.69 1.28
193 194 7.768582 TGTCATTTTCTTCGGAAGAGCATAATA 59.231 33.333 18.93 1.59 43.69 0.98
194 195 8.279103 GTCATTTTCTTCGGAAGAGCATAATAG 58.721 37.037 18.93 7.75 43.69 1.73
195 196 7.987458 TCATTTTCTTCGGAAGAGCATAATAGT 59.013 33.333 18.93 0.57 43.69 2.12
196 197 8.616076 CATTTTCTTCGGAAGAGCATAATAGTT 58.384 33.333 18.93 0.00 43.69 2.24
197 198 8.561738 TTTTCTTCGGAAGAGCATAATAGTTT 57.438 30.769 18.93 0.00 43.69 2.66
198 199 8.561738 TTTCTTCGGAAGAGCATAATAGTTTT 57.438 30.769 18.93 0.00 43.69 2.43
199 200 8.561738 TTCTTCGGAAGAGCATAATAGTTTTT 57.438 30.769 18.93 0.00 43.69 1.94
220 221 7.582435 TTTTTGCACAGACGACATTTAAAAA 57.418 28.000 0.00 0.00 0.00 1.94
251 252 5.767816 TCAGCATGATTTTGATCAGATGG 57.232 39.130 0.00 0.00 42.56 3.51
252 253 4.037565 TCAGCATGATTTTGATCAGATGGC 59.962 41.667 0.00 0.00 42.56 4.40
253 254 3.321111 AGCATGATTTTGATCAGATGGCC 59.679 43.478 0.00 0.00 33.59 5.36
254 255 3.855895 GCATGATTTTGATCAGATGGCCG 60.856 47.826 0.00 0.00 33.59 6.13
255 256 3.003394 TGATTTTGATCAGATGGCCGT 57.997 42.857 0.00 0.00 0.00 5.68
256 257 2.684374 TGATTTTGATCAGATGGCCGTG 59.316 45.455 0.00 0.00 0.00 4.94
257 258 0.810648 TTTTGATCAGATGGCCGTGC 59.189 50.000 0.00 0.00 0.00 5.34
258 259 0.322366 TTTGATCAGATGGCCGTGCA 60.322 50.000 0.00 0.00 0.00 4.57
259 260 0.745486 TTGATCAGATGGCCGTGCAG 60.745 55.000 0.00 0.00 0.00 4.41
260 261 1.890979 GATCAGATGGCCGTGCAGG 60.891 63.158 0.00 0.00 44.97 4.85
269 270 3.803082 CCGTGCAGGCATTCACCG 61.803 66.667 0.00 0.00 33.69 4.94
270 271 3.803082 CGTGCAGGCATTCACCGG 61.803 66.667 0.00 0.00 33.69 5.28
271 272 3.443045 GTGCAGGCATTCACCGGG 61.443 66.667 6.32 0.00 33.69 5.73
272 273 3.645660 TGCAGGCATTCACCGGGA 61.646 61.111 6.32 0.00 33.69 5.14
273 274 3.134127 GCAGGCATTCACCGGGAC 61.134 66.667 6.32 0.00 33.69 4.46
274 275 2.438434 CAGGCATTCACCGGGACC 60.438 66.667 6.32 0.00 33.69 4.46
275 276 2.610859 AGGCATTCACCGGGACCT 60.611 61.111 6.32 0.00 33.69 3.85
276 277 2.124695 GGCATTCACCGGGACCTC 60.125 66.667 6.32 0.00 0.00 3.85
277 278 2.124695 GCATTCACCGGGACCTCC 60.125 66.667 6.32 0.00 0.00 4.30
291 292 3.124921 CTCCCGCGGCGAATGTTT 61.125 61.111 25.92 0.00 0.00 2.83
292 293 3.381169 CTCCCGCGGCGAATGTTTG 62.381 63.158 25.92 2.11 0.00 2.93
306 307 7.462109 GCGAATGTTTGCCAATTTATCATTA 57.538 32.000 0.00 0.00 0.00 1.90
318 320 9.308318 GCCAATTTATCATTACCGTTGTTAAAT 57.692 29.630 0.00 0.00 33.53 1.40
324 326 6.879276 TCATTACCGTTGTTAAATGGACAA 57.121 33.333 3.76 0.00 44.21 3.18
385 387 1.069204 TCTGATAACTGCCCGATCAGC 59.931 52.381 6.29 0.00 44.12 4.26
387 389 1.417517 TGATAACTGCCCGATCAGCAT 59.582 47.619 7.79 0.00 40.04 3.79
444 448 3.848726 CGATTTTTGGGATCCCACAAAG 58.151 45.455 36.19 25.49 45.32 2.77
447 451 3.244526 ATTTTTGGGATCCCACAAAGCAC 60.245 43.478 36.19 10.79 45.32 4.40
510 514 2.549754 GTGGTATCCAAATCATGCCTCG 59.450 50.000 0.00 0.00 34.18 4.63
602 624 2.591429 TGCCAACTCACGCCACTG 60.591 61.111 0.00 0.00 0.00 3.66
631 655 2.356667 CTGCCCCCTCCCTCAAAC 59.643 66.667 0.00 0.00 0.00 2.93
641 665 3.777925 CCTCAAACCACGAGCGCG 61.778 66.667 8.75 8.75 44.79 6.86
642 666 4.430423 CTCAAACCACGAGCGCGC 62.430 66.667 26.66 26.66 42.48 6.86
926 968 2.256764 CTGCACGCTCGTCACTCT 59.743 61.111 0.00 0.00 0.00 3.24
927 969 1.372251 CTGCACGCTCGTCACTCTT 60.372 57.895 0.00 0.00 0.00 2.85
928 970 0.109735 CTGCACGCTCGTCACTCTTA 60.110 55.000 0.00 0.00 0.00 2.10
929 971 0.386858 TGCACGCTCGTCACTCTTAC 60.387 55.000 0.00 0.00 0.00 2.34
930 972 0.109689 GCACGCTCGTCACTCTTACT 60.110 55.000 0.00 0.00 0.00 2.24
931 973 1.607713 CACGCTCGTCACTCTTACTG 58.392 55.000 0.00 0.00 0.00 2.74
932 974 1.197036 CACGCTCGTCACTCTTACTGA 59.803 52.381 0.00 0.00 0.00 3.41
1000 1065 0.756294 TTGACGACAGAGGCTGGAAA 59.244 50.000 0.00 0.00 35.51 3.13
1003 1068 0.976641 ACGACAGAGGCTGGAAATGA 59.023 50.000 0.00 0.00 35.51 2.57
1014 1079 3.265791 GCTGGAAATGAAGATGTCGTCT 58.734 45.455 0.00 0.00 39.43 4.18
1153 1218 0.388134 CAAGCAGCAGGTACGTACGT 60.388 55.000 25.98 25.98 0.00 3.57
1154 1219 1.135603 CAAGCAGCAGGTACGTACGTA 60.136 52.381 23.60 23.60 0.00 3.57
1164 1229 4.465512 CGTACGTACGCCGGCAGT 62.466 66.667 32.36 25.75 43.14 4.40
1165 1230 2.877582 GTACGTACGCCGGCAGTG 60.878 66.667 28.98 13.29 42.24 3.66
1166 1231 4.781959 TACGTACGCCGGCAGTGC 62.782 66.667 28.98 24.94 42.24 4.40
1186 1251 3.884350 CGGCGCATTGCTCTGCAT 61.884 61.111 10.83 0.00 45.43 3.96
1187 1252 2.025727 GGCGCATTGCTCTGCATC 59.974 61.111 10.83 2.91 45.43 3.91
1188 1253 2.478890 GGCGCATTGCTCTGCATCT 61.479 57.895 10.83 0.00 45.43 2.90
1189 1254 1.432251 GCGCATTGCTCTGCATCTT 59.568 52.632 0.30 0.00 42.40 2.40
1190 1255 0.591741 GCGCATTGCTCTGCATCTTC 60.592 55.000 0.30 0.00 42.40 2.87
1191 1256 0.315951 CGCATTGCTCTGCATCTTCG 60.316 55.000 7.12 0.00 42.40 3.79
1192 1257 0.731417 GCATTGCTCTGCATCTTCGT 59.269 50.000 0.16 0.00 41.87 3.85
1193 1258 1.267932 GCATTGCTCTGCATCTTCGTC 60.268 52.381 0.16 0.00 41.87 4.20
1194 1259 1.329906 CATTGCTCTGCATCTTCGTCC 59.670 52.381 0.00 0.00 38.76 4.79
1195 1260 0.610174 TTGCTCTGCATCTTCGTCCT 59.390 50.000 0.00 0.00 38.76 3.85
1196 1261 0.174389 TGCTCTGCATCTTCGTCCTC 59.826 55.000 0.00 0.00 31.71 3.71
1197 1262 0.459489 GCTCTGCATCTTCGTCCTCT 59.541 55.000 0.00 0.00 0.00 3.69
1198 1263 1.134848 GCTCTGCATCTTCGTCCTCTT 60.135 52.381 0.00 0.00 0.00 2.85
1199 1264 2.808244 CTCTGCATCTTCGTCCTCTTC 58.192 52.381 0.00 0.00 0.00 2.87
1200 1265 2.426738 CTCTGCATCTTCGTCCTCTTCT 59.573 50.000 0.00 0.00 0.00 2.85
1201 1266 2.425312 TCTGCATCTTCGTCCTCTTCTC 59.575 50.000 0.00 0.00 0.00 2.87
1204 1269 2.952978 GCATCTTCGTCCTCTTCTCCTA 59.047 50.000 0.00 0.00 0.00 2.94
1206 1271 3.715638 TCTTCGTCCTCTTCTCCTACA 57.284 47.619 0.00 0.00 0.00 2.74
1209 1274 2.933573 TCGTCCTCTTCTCCTACATCC 58.066 52.381 0.00 0.00 0.00 3.51
1220 1285 6.605594 TCTTCTCCTACATCCTCTTCTTTCTC 59.394 42.308 0.00 0.00 0.00 2.87
1235 1300 5.041191 TCTTTCTCCTTCTTGCTCTGTTT 57.959 39.130 0.00 0.00 0.00 2.83
1239 1309 2.483491 CTCCTTCTTGCTCTGTTTCTGC 59.517 50.000 0.00 0.00 0.00 4.26
1242 1312 2.916702 TCTTGCTCTGTTTCTGCTGA 57.083 45.000 0.00 0.00 0.00 4.26
1358 1441 2.203625 AACCTGCCCGCACCATTT 60.204 55.556 0.00 0.00 0.00 2.32
1367 1450 0.250234 CCGCACCATTTCTCCTCTCA 59.750 55.000 0.00 0.00 0.00 3.27
1380 1474 7.937700 TTTCTCCTCTCATGGTAATTATCCT 57.062 36.000 0.00 0.00 0.00 3.24
1390 1484 8.980481 TCATGGTAATTATCCTTTCTTCTTCC 57.020 34.615 0.00 0.00 0.00 3.46
1391 1485 8.781951 TCATGGTAATTATCCTTTCTTCTTCCT 58.218 33.333 0.00 0.00 0.00 3.36
1393 1487 8.393959 TGGTAATTATCCTTTCTTCTTCCTCT 57.606 34.615 0.00 0.00 0.00 3.69
1394 1488 8.487028 TGGTAATTATCCTTTCTTCTTCCTCTC 58.513 37.037 0.00 0.00 0.00 3.20
1395 1489 7.934665 GGTAATTATCCTTTCTTCTTCCTCTCC 59.065 40.741 0.00 0.00 0.00 3.71
1396 1490 7.763564 AATTATCCTTTCTTCTTCCTCTCCT 57.236 36.000 0.00 0.00 0.00 3.69
1397 1491 6.800072 TTATCCTTTCTTCTTCCTCTCCTC 57.200 41.667 0.00 0.00 0.00 3.71
1398 1492 3.445987 TCCTTTCTTCTTCCTCTCCTCC 58.554 50.000 0.00 0.00 0.00 4.30
1399 1493 3.078305 TCCTTTCTTCTTCCTCTCCTCCT 59.922 47.826 0.00 0.00 0.00 3.69
1400 1494 3.197549 CCTTTCTTCTTCCTCTCCTCCTG 59.802 52.174 0.00 0.00 0.00 3.86
1401 1495 1.859302 TCTTCTTCCTCTCCTCCTGC 58.141 55.000 0.00 0.00 0.00 4.85
1402 1496 0.829990 CTTCTTCCTCTCCTCCTGCC 59.170 60.000 0.00 0.00 0.00 4.85
1403 1497 0.618968 TTCTTCCTCTCCTCCTGCCC 60.619 60.000 0.00 0.00 0.00 5.36
1404 1498 2.364317 TTCCTCTCCTCCTGCCCG 60.364 66.667 0.00 0.00 0.00 6.13
1405 1499 3.239627 TTCCTCTCCTCCTGCCCGT 62.240 63.158 0.00 0.00 0.00 5.28
1444 1538 3.319198 GTCGGTGCCTCTCCCCAA 61.319 66.667 0.00 0.00 0.00 4.12
1445 1539 2.528127 TCGGTGCCTCTCCCCAAA 60.528 61.111 0.00 0.00 0.00 3.28
1448 1542 0.254747 CGGTGCCTCTCCCCAAATTA 59.745 55.000 0.00 0.00 0.00 1.40
1463 1557 3.613737 CCAAATTAGCCGCTGTTCATTTG 59.386 43.478 2.16 11.40 33.34 2.32
1549 1646 4.957759 TTTCCGAGCTTATTTAACTGCC 57.042 40.909 0.00 0.00 0.00 4.85
1553 1650 3.181510 CCGAGCTTATTTAACTGCCACAC 60.182 47.826 0.00 0.00 0.00 3.82
1565 1662 5.443185 AACTGCCACACATATATTCATGC 57.557 39.130 0.00 0.00 0.00 4.06
1616 2110 4.037690 GCTGTGAAATCGAAATGTATGGC 58.962 43.478 0.00 0.00 0.00 4.40
1641 2151 7.051000 CCATGTTTTTCCCCTTTCTGTTTTTA 58.949 34.615 0.00 0.00 0.00 1.52
1644 2155 7.100409 TGTTTTTCCCCTTTCTGTTTTTACAG 58.900 34.615 0.00 0.00 39.00 2.74
1648 2160 4.522789 TCCCCTTTCTGTTTTTACAGCATC 59.477 41.667 0.50 0.00 37.63 3.91
1650 2162 5.335976 CCCCTTTCTGTTTTTACAGCATCTC 60.336 44.000 0.50 0.00 37.63 2.75
1653 2165 7.080724 CCTTTCTGTTTTTACAGCATCTCTTC 58.919 38.462 0.50 0.00 37.63 2.87
1682 2194 2.124277 ACCGGGTAAATGCCTTTCTC 57.876 50.000 6.32 0.00 0.00 2.87
1693 2205 7.595130 GGTAAATGCCTTTCTCTTTTTACACTG 59.405 37.037 0.00 0.00 0.00 3.66
1696 2208 5.373222 TGCCTTTCTCTTTTTACACTGCTA 58.627 37.500 0.00 0.00 0.00 3.49
1717 2229 3.709987 ACCTATATACGTCGTTGTTGGC 58.290 45.455 1.78 0.00 0.00 4.52
1773 2287 1.591863 GAATACGCCGACTCCCAGC 60.592 63.158 0.00 0.00 0.00 4.85
1774 2288 2.973180 GAATACGCCGACTCCCAGCC 62.973 65.000 0.00 0.00 0.00 4.85
1793 2307 2.749682 AGGACATCACCTGCGCAA 59.250 55.556 13.05 0.00 39.01 4.85
1874 2391 7.534085 TGTGTAAATCTCCATTTAGTAAGCG 57.466 36.000 0.00 0.00 35.52 4.68
1917 2434 2.646175 CGTGACGGATGTCCCTGGT 61.646 63.158 0.00 0.00 44.86 4.00
1929 2446 1.134371 GTCCCTGGTAATGAGCTGTCC 60.134 57.143 0.00 0.00 0.00 4.02
1952 2469 1.530013 CCTCAGGGCAGGCAAACAAG 61.530 60.000 0.00 0.00 0.00 3.16
1959 2476 1.008538 CAGGCAAACAAGTGTCGGC 60.009 57.895 0.00 0.10 0.00 5.54
2020 2537 3.051940 TCCAGTGCCATCTCTATCCTT 57.948 47.619 0.00 0.00 0.00 3.36
2024 2541 4.202440 CCAGTGCCATCTCTATCCTTTCAT 60.202 45.833 0.00 0.00 0.00 2.57
2025 2542 4.755629 CAGTGCCATCTCTATCCTTTCATG 59.244 45.833 0.00 0.00 0.00 3.07
2074 2591 1.941812 CCGTGCTTTCGCTTTCACT 59.058 52.632 0.00 0.00 36.97 3.41
2205 2722 1.756538 CTTTTGCCTTCCAAGTGTGGT 59.243 47.619 0.00 0.00 46.11 4.16
2215 2732 4.708576 TCCAAGTGTGGTAACCATGTAA 57.291 40.909 0.00 0.00 46.11 2.41
2218 2735 4.825085 CCAAGTGTGGTAACCATGTAACTT 59.175 41.667 0.00 0.00 40.42 2.66
2219 2736 5.998981 CCAAGTGTGGTAACCATGTAACTTA 59.001 40.000 0.00 0.00 40.42 2.24
2221 2738 7.825270 CCAAGTGTGGTAACCATGTAACTTATA 59.175 37.037 0.00 0.00 40.42 0.98
2223 2740 9.609346 AAGTGTGGTAACCATGTAACTTATATC 57.391 33.333 0.00 0.00 35.28 1.63
2224 2741 8.208903 AGTGTGGTAACCATGTAACTTATATCC 58.791 37.037 0.00 0.00 35.28 2.59
2225 2742 7.443272 GTGTGGTAACCATGTAACTTATATCCC 59.557 40.741 0.00 0.00 35.28 3.85
2226 2743 6.938596 GTGGTAACCATGTAACTTATATCCCC 59.061 42.308 0.00 0.00 35.28 4.81
2227 2744 6.044637 TGGTAACCATGTAACTTATATCCCCC 59.955 42.308 0.00 0.00 0.00 5.40
2228 2745 6.044637 GGTAACCATGTAACTTATATCCCCCA 59.955 42.308 0.00 0.00 0.00 4.96
2232 2749 6.161526 ACCATGTAACTTATATCCCCCAACTT 59.838 38.462 0.00 0.00 0.00 2.66
2233 2750 6.490040 CCATGTAACTTATATCCCCCAACTTG 59.510 42.308 0.00 0.00 0.00 3.16
2234 2751 6.008696 TGTAACTTATATCCCCCAACTTGG 57.991 41.667 0.12 0.12 37.25 3.61
2244 2761 2.106844 CCAACTTGGGCCTTATCGC 58.893 57.895 4.53 0.00 32.67 4.58
2255 2772 1.202302 GCCTTATCGCCAAGAAAAGCC 60.202 52.381 0.00 0.00 0.00 4.35
2256 2773 2.091541 CCTTATCGCCAAGAAAAGCCA 58.908 47.619 0.00 0.00 0.00 4.75
2257 2774 2.159379 CCTTATCGCCAAGAAAAGCCAC 60.159 50.000 0.00 0.00 0.00 5.01
2259 2776 0.889186 ATCGCCAAGAAAAGCCACGT 60.889 50.000 0.00 0.00 0.00 4.49
2260 2777 1.370414 CGCCAAGAAAAGCCACGTG 60.370 57.895 9.08 9.08 0.00 4.49
2262 2779 0.383949 GCCAAGAAAAGCCACGTGAA 59.616 50.000 19.30 0.00 0.00 3.18
2263 2780 1.000274 GCCAAGAAAAGCCACGTGAAT 60.000 47.619 19.30 1.15 0.00 2.57
2264 2781 2.545742 GCCAAGAAAAGCCACGTGAATT 60.546 45.455 19.30 8.32 0.00 2.17
2266 2783 4.226761 CCAAGAAAAGCCACGTGAATTAC 58.773 43.478 19.30 8.94 0.00 1.89
2278 2821 6.128391 GCCACGTGAATTACTATTGTGAAAGA 60.128 38.462 19.30 0.00 0.00 2.52
2280 2823 7.957484 CCACGTGAATTACTATTGTGAAAGAAG 59.043 37.037 19.30 0.00 0.00 2.85
2282 2825 9.701098 ACGTGAATTACTATTGTGAAAGAAGTA 57.299 29.630 0.00 0.00 0.00 2.24
2283 2826 9.953825 CGTGAATTACTATTGTGAAAGAAGTAC 57.046 33.333 0.00 0.00 0.00 2.73
2290 2833 8.034058 ACTATTGTGAAAGAAGTACATGAAGC 57.966 34.615 0.00 0.00 0.00 3.86
2292 2835 5.929697 TGTGAAAGAAGTACATGAAGCTG 57.070 39.130 0.00 0.00 0.00 4.24
2295 2838 5.049129 GTGAAAGAAGTACATGAAGCTGCTT 60.049 40.000 15.92 15.92 29.82 3.91
2296 2839 5.180117 TGAAAGAAGTACATGAAGCTGCTTC 59.820 40.000 30.35 30.35 40.54 3.86
2297 2840 4.550076 AGAAGTACATGAAGCTGCTTCT 57.450 40.909 34.44 21.56 40.73 2.85
2301 2844 7.108847 AGAAGTACATGAAGCTGCTTCTAAAT 58.891 34.615 34.44 21.51 40.27 1.40
2303 2846 8.430801 AAGTACATGAAGCTGCTTCTAAATAG 57.569 34.615 34.44 21.84 40.73 1.73
2304 2847 7.560368 AGTACATGAAGCTGCTTCTAAATAGT 58.440 34.615 34.44 25.00 40.73 2.12
2306 2849 7.313951 ACATGAAGCTGCTTCTAAATAGTTC 57.686 36.000 34.44 12.70 40.73 3.01
2310 2853 6.936900 TGAAGCTGCTTCTAAATAGTTCTGTT 59.063 34.615 34.44 1.17 40.73 3.16
2317 2860 8.883731 TGCTTCTAAATAGTTCTGTTTATCAGC 58.116 33.333 16.45 16.45 43.32 4.26
2325 2910 6.155475 AGTTCTGTTTATCAGCTAGGCTAG 57.845 41.667 17.33 17.33 43.32 3.42
2345 2930 5.447818 GCTAGCGATGCTGAATTTTAACTGT 60.448 40.000 0.00 0.00 40.10 3.55
2346 2931 4.726416 AGCGATGCTGAATTTTAACTGTG 58.274 39.130 0.00 0.00 37.57 3.66
2350 2999 6.614162 GCGATGCTGAATTTTAACTGTGTTTG 60.614 38.462 0.00 0.00 0.00 2.93
2351 3000 6.129115 CGATGCTGAATTTTAACTGTGTTTGG 60.129 38.462 0.00 0.00 0.00 3.28
2354 3003 6.533367 TGCTGAATTTTAACTGTGTTTGGAAC 59.467 34.615 0.00 0.00 0.00 3.62
2356 3005 6.853720 TGAATTTTAACTGTGTTTGGAACGA 58.146 32.000 0.00 0.00 0.00 3.85
2358 3007 3.929417 TTAACTGTGTTTGGAACGACG 57.071 42.857 0.00 0.00 0.00 5.12
2360 3009 1.283736 ACTGTGTTTGGAACGACGAC 58.716 50.000 0.00 0.00 0.00 4.34
2361 3010 0.228742 CTGTGTTTGGAACGACGACG 59.771 55.000 5.58 5.58 45.75 5.12
2362 3011 0.179142 TGTGTTTGGAACGACGACGA 60.179 50.000 15.32 0.00 42.66 4.20
2373 3022 1.443872 GACGACGATTGGACTGCGT 60.444 57.895 0.00 0.00 41.45 5.24
2377 3026 1.924524 CGACGATTGGACTGCGTAAAT 59.075 47.619 0.00 0.00 38.51 1.40
2378 3027 2.285026 CGACGATTGGACTGCGTAAATG 60.285 50.000 0.00 0.00 38.51 2.32
2386 3035 2.864343 GGACTGCGTAAATGAATAGCGT 59.136 45.455 0.00 0.00 0.00 5.07
2387 3036 4.046462 GGACTGCGTAAATGAATAGCGTA 58.954 43.478 0.00 0.00 0.00 4.42
2388 3037 4.505191 GGACTGCGTAAATGAATAGCGTAA 59.495 41.667 0.00 0.00 0.00 3.18
2392 3041 5.733299 TGCGTAAATGAATAGCGTAACATG 58.267 37.500 0.00 0.00 0.00 3.21
2403 3052 1.346365 CGTAACATGGTCTGACGGTG 58.654 55.000 1.07 5.70 0.00 4.94
2572 3225 2.513897 GCGTTCCATAAGGCGGCT 60.514 61.111 5.25 5.25 36.82 5.52
2627 3280 1.610554 GAGGATCCCCGTTCCGTTCA 61.611 60.000 8.55 0.00 38.36 3.18
2659 3312 2.947448 GTGATTTCACCATCTTGGCC 57.053 50.000 0.00 0.00 42.67 5.36
2710 3374 3.396260 AGCTCATGTTTTTGCTGCATT 57.604 38.095 1.84 0.00 34.19 3.56
2772 3443 3.064820 TGAAACTCGAAACTTTGCAGGAC 59.935 43.478 0.00 0.00 0.00 3.85
2817 3488 1.080025 CGACCTTCCGTTCCCTGAC 60.080 63.158 0.00 0.00 0.00 3.51
2853 3524 2.422303 CCATGGCTCGAATGGCAAT 58.578 52.632 0.00 0.00 45.43 3.56
2880 3551 6.148976 GGTTCACAGTAGACCAAGGTAAAATC 59.851 42.308 0.00 0.00 0.00 2.17
2881 3552 6.428083 TCACAGTAGACCAAGGTAAAATCA 57.572 37.500 0.00 0.00 0.00 2.57
2890 3561 7.918076 AGACCAAGGTAAAATCATCAGAGTAA 58.082 34.615 0.00 0.00 0.00 2.24
2891 3562 8.383175 AGACCAAGGTAAAATCATCAGAGTAAA 58.617 33.333 0.00 0.00 0.00 2.01
2892 3563 8.567285 ACCAAGGTAAAATCATCAGAGTAAAG 57.433 34.615 0.00 0.00 0.00 1.85
2893 3564 7.121315 ACCAAGGTAAAATCATCAGAGTAAAGC 59.879 37.037 0.00 0.00 0.00 3.51
2897 3568 5.573337 AAAATCATCAGAGTAAAGCAGCC 57.427 39.130 0.00 0.00 0.00 4.85
2915 3591 4.926140 AGCCCAAAAATAGCTGATAAGC 57.074 40.909 0.00 0.00 34.99 3.09
2929 3605 6.125029 AGCTGATAAGCACTTCATATTTGGT 58.875 36.000 4.45 0.00 37.25 3.67
2930 3606 7.282585 AGCTGATAAGCACTTCATATTTGGTA 58.717 34.615 4.45 0.00 37.25 3.25
2942 3618 8.543774 ACTTCATATTTGGTAAGACAGAGACAT 58.456 33.333 0.00 0.00 0.00 3.06
2943 3619 8.722480 TTCATATTTGGTAAGACAGAGACATG 57.278 34.615 0.00 0.00 0.00 3.21
2973 3649 9.760660 GTACTGAACTAGCTTCATGTAATTTTG 57.239 33.333 0.00 0.00 38.26 2.44
3112 3789 1.375140 ACCTACTCGTCGCTCGACA 60.375 57.895 20.35 8.34 44.77 4.35
3146 3823 1.808945 GTCCTACTCGTTCCTCGTGAA 59.191 52.381 0.00 0.00 40.80 3.18
3150 3827 1.801913 CTCGTTCCTCGTGAAGGCG 60.802 63.158 5.62 0.00 45.78 5.52
3207 3884 2.593436 CGCTTCACCAACCCCGTT 60.593 61.111 0.00 0.00 0.00 4.44
3371 4050 3.129109 CTGAAGTCACATATGCTGCGAT 58.871 45.455 1.58 0.00 0.00 4.58
3414 4093 6.872628 AATGAAGTCACATACATATGCTGG 57.127 37.500 1.58 0.00 37.19 4.85
3415 4094 4.707105 TGAAGTCACATACATATGCTGGG 58.293 43.478 1.58 2.08 37.19 4.45
3441 4120 5.777802 TCTGAATGACTGAAACTCTCTGAC 58.222 41.667 0.00 0.00 0.00 3.51
3472 4151 2.915659 TGGAACCTGACGGCGAGT 60.916 61.111 16.62 1.87 0.00 4.18
3541 4220 0.863538 CGACGAGAACGATGAGGCTG 60.864 60.000 0.00 0.00 42.66 4.85
3608 4287 1.982395 AGCGTGTCCTTCATCCCGA 60.982 57.895 0.00 0.00 0.00 5.14
3745 4424 0.672401 CCAACATGCGGGACTACGTT 60.672 55.000 0.00 0.00 35.98 3.99
3757 4436 2.030451 GGACTACGTTGAGGTCGTCTTT 60.030 50.000 3.44 0.00 41.72 2.52
3802 4481 1.068083 CTGGCACATCGACGGCTAT 59.932 57.895 0.00 0.00 38.20 2.97
3832 4511 4.072088 GTCGGGTGCGTTCGCTTG 62.072 66.667 17.63 5.67 0.00 4.01
3835 4514 4.389576 GGGTGCGTTCGCTTGCTG 62.390 66.667 17.63 0.00 0.00 4.41
3847 4535 0.320073 GCTTGCTGCCATTCTTGCAA 60.320 50.000 0.00 0.00 42.16 4.08
3860 4548 2.527497 TCTTGCAAATCATGGGCTTGA 58.473 42.857 0.00 0.00 0.00 3.02
3870 4558 5.587388 ATCATGGGCTTGATTTAACACAG 57.413 39.130 0.00 0.00 32.38 3.66
3887 4585 4.592942 ACACAGTGATTTGTATGGCTGAT 58.407 39.130 7.81 0.00 0.00 2.90
3904 4602 4.022242 GGCTGATCATTGATTTCTGGATGG 60.022 45.833 0.00 0.00 0.00 3.51
3913 4611 8.036575 TCATTGATTTCTGGATGGAAAATGAAC 58.963 33.333 0.00 0.00 38.46 3.18
3914 4612 7.543359 TTGATTTCTGGATGGAAAATGAACT 57.457 32.000 0.00 0.00 38.46 3.01
3915 4613 6.927416 TGATTTCTGGATGGAAAATGAACTG 58.073 36.000 0.00 0.00 38.46 3.16
4006 4704 1.144969 ACACGTTGCAGGTATGTTCG 58.855 50.000 0.00 0.00 0.00 3.95
4012 4710 0.172578 TGCAGGTATGTTCGTCTCCG 59.827 55.000 0.00 0.00 0.00 4.63
4019 4717 0.243907 ATGTTCGTCTCCGGTGACAG 59.756 55.000 30.16 23.08 36.82 3.51
4020 4718 1.733399 GTTCGTCTCCGGTGACAGC 60.733 63.158 30.16 17.99 36.82 4.40
4021 4719 2.927580 TTCGTCTCCGGTGACAGCC 61.928 63.158 30.16 9.21 36.82 4.85
4029 4727 4.592426 GGTGACAGCCGACTAACC 57.408 61.111 0.00 0.00 0.00 2.85
4030 4728 1.669440 GGTGACAGCCGACTAACCA 59.331 57.895 0.00 0.00 0.00 3.67
4032 4730 1.429463 GTGACAGCCGACTAACCAAG 58.571 55.000 0.00 0.00 0.00 3.61
4033 4731 0.320421 TGACAGCCGACTAACCAAGC 60.320 55.000 0.00 0.00 0.00 4.01
4034 4732 0.320421 GACAGCCGACTAACCAAGCA 60.320 55.000 0.00 0.00 0.00 3.91
4038 4736 1.639298 GCCGACTAACCAAGCAGCAG 61.639 60.000 0.00 0.00 0.00 4.24
4054 4774 0.457851 GCAGCTCTACGGTGTCTGAT 59.542 55.000 0.00 0.00 42.99 2.90
4078 4798 6.751514 TTTAGTTCTGAACTTTGTGCTTCA 57.248 33.333 26.33 4.22 42.81 3.02
4102 4826 2.039787 TATCCTGGGGCGTGGACA 59.960 61.111 0.00 0.00 34.90 4.02
4108 4832 3.845259 GGGGCGTGGACAGCGATA 61.845 66.667 0.00 0.00 35.00 2.92
4117 4841 1.691434 TGGACAGCGATATACATGCCA 59.309 47.619 0.00 0.00 0.00 4.92
4144 4868 1.302192 CGTGGGGATGTGGAACGTT 60.302 57.895 0.00 0.00 42.39 3.99
4210 4934 4.695231 CGGGTATACTCGCCGGCG 62.695 72.222 42.13 42.13 41.35 6.46
4249 4973 2.354729 CCCATCCCCAAGAACGCA 59.645 61.111 0.00 0.00 0.00 5.24
4296 5020 2.586792 GACCAGGCCGCTCTGAAT 59.413 61.111 0.00 0.00 36.93 2.57
4299 5023 1.078214 CCAGGCCGCTCTGAATTCA 60.078 57.895 8.12 8.12 36.93 2.57
4304 5028 1.131315 GGCCGCTCTGAATTCAGTTTC 59.869 52.381 29.80 19.65 44.12 2.78
4312 5036 4.641396 TCTGAATTCAGTTTCCGTGTCAT 58.359 39.130 29.80 0.00 44.12 3.06
4366 5090 4.261741 GCTGAGCTCCAAATTCTTTTGACA 60.262 41.667 12.15 0.00 44.11 3.58
4368 5092 4.279169 TGAGCTCCAAATTCTTTTGACAGG 59.721 41.667 12.15 0.00 44.11 4.00
4425 5179 6.589907 CCTGGAAATTGTAGGCAAAATGTTAC 59.410 38.462 0.00 0.00 38.21 2.50
4458 5212 4.497674 GCATCTTGCTTGCTCTCCTATTTG 60.498 45.833 0.00 0.00 40.96 2.32
4506 5260 8.783833 TTAGTTACAGAGGTAGTACTACACTG 57.216 38.462 33.19 33.19 42.16 3.66
4509 5263 7.390162 AGTTACAGAGGTAGTACTACACTGTTC 59.610 40.741 38.46 32.95 44.34 3.18
4510 5264 4.694509 ACAGAGGTAGTACTACACTGTTCG 59.305 45.833 34.01 22.62 44.34 3.95
4594 5349 6.054295 TGAATTAAACAAGCAAATTGCCAGT 58.946 32.000 15.04 10.57 46.52 4.00
4680 5441 5.605564 TGGTATCAACGTGACTGAATTTG 57.394 39.130 0.00 0.00 0.00 2.32
4964 5725 2.030457 CCGCTCAAACATCGTTCATACC 59.970 50.000 0.00 0.00 0.00 2.73
5008 5806 5.128827 GGGATTGTTGTCCTACATGAGACTA 59.871 44.000 0.00 0.00 38.38 2.59
5016 5814 7.751768 TGTCCTACATGAGACTATATGTGAG 57.248 40.000 0.00 6.25 37.98 3.51
5045 5843 2.929531 TGTCGAGCAGAGTCATCTTC 57.070 50.000 0.00 0.00 31.64 2.87
5081 5879 5.021033 AGAATGCCTACAATGAGAGTGAG 57.979 43.478 0.00 0.00 0.00 3.51
5183 5981 2.413310 TTCTCGCCTTTTCCCCATAC 57.587 50.000 0.00 0.00 0.00 2.39
5204 6002 3.005050 ACGTGACCTTGAGTTATCGAACA 59.995 43.478 0.00 0.00 38.10 3.18
5207 6005 4.929808 GTGACCTTGAGTTATCGAACACAT 59.070 41.667 0.00 0.00 36.27 3.21
5224 6022 2.229784 CACATGAGAAAAAGGCACCCTC 59.770 50.000 0.00 0.00 30.89 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.248253 GGGTTACAACAATTATTAGTTTCCCAG 58.752 37.037 0.00 0.00 0.00 4.45
1 2 7.178805 GGGGTTACAACAATTATTAGTTTCCCA 59.821 37.037 0.00 0.00 0.00 4.37
2 3 7.364056 GGGGGTTACAACAATTATTAGTTTCCC 60.364 40.741 0.00 0.00 0.00 3.97
3 4 7.549839 GGGGGTTACAACAATTATTAGTTTCC 58.450 38.462 0.00 0.00 0.00 3.13
4 5 7.252708 CGGGGGTTACAACAATTATTAGTTTC 58.747 38.462 0.00 0.00 0.00 2.78
5 6 6.350361 GCGGGGGTTACAACAATTATTAGTTT 60.350 38.462 0.00 0.00 0.00 2.66
6 7 5.125900 GCGGGGGTTACAACAATTATTAGTT 59.874 40.000 0.00 0.00 0.00 2.24
7 8 4.641541 GCGGGGGTTACAACAATTATTAGT 59.358 41.667 0.00 0.00 0.00 2.24
8 9 4.641094 TGCGGGGGTTACAACAATTATTAG 59.359 41.667 0.00 0.00 0.00 1.73
9 10 4.597004 TGCGGGGGTTACAACAATTATTA 58.403 39.130 0.00 0.00 0.00 0.98
10 11 3.432378 TGCGGGGGTTACAACAATTATT 58.568 40.909 0.00 0.00 0.00 1.40
11 12 3.088789 TGCGGGGGTTACAACAATTAT 57.911 42.857 0.00 0.00 0.00 1.28
12 13 2.581216 TGCGGGGGTTACAACAATTA 57.419 45.000 0.00 0.00 0.00 1.40
13 14 1.705873 TTGCGGGGGTTACAACAATT 58.294 45.000 0.00 0.00 0.00 2.32
14 15 1.705873 TTTGCGGGGGTTACAACAAT 58.294 45.000 0.00 0.00 0.00 2.71
15 16 1.481871 TTTTGCGGGGGTTACAACAA 58.518 45.000 0.00 0.00 0.00 2.83
16 17 1.481871 TTTTTGCGGGGGTTACAACA 58.518 45.000 0.00 0.00 0.00 3.33
34 35 8.594687 GCAGTTGCATGACGATTAATTTATTTT 58.405 29.630 0.00 0.00 41.59 1.82
35 36 8.118893 GCAGTTGCATGACGATTAATTTATTT 57.881 30.769 0.00 0.00 41.59 1.40
36 37 7.684062 GCAGTTGCATGACGATTAATTTATT 57.316 32.000 0.00 0.00 41.59 1.40
53 54 3.806591 ATGTCAAGCATGCAGTTGC 57.193 47.368 21.98 12.52 43.09 4.17
79 80 5.475220 TCAAGATATTGCGGTCCTTCAAAAA 59.525 36.000 0.00 0.00 0.00 1.94
80 81 5.007034 TCAAGATATTGCGGTCCTTCAAAA 58.993 37.500 0.00 0.00 0.00 2.44
81 82 4.584874 TCAAGATATTGCGGTCCTTCAAA 58.415 39.130 0.00 0.00 0.00 2.69
82 83 4.214986 TCAAGATATTGCGGTCCTTCAA 57.785 40.909 0.00 0.00 0.00 2.69
83 84 3.904800 TCAAGATATTGCGGTCCTTCA 57.095 42.857 0.00 0.00 0.00 3.02
84 85 4.394920 TGTTTCAAGATATTGCGGTCCTTC 59.605 41.667 0.00 0.00 0.00 3.46
85 86 4.331968 TGTTTCAAGATATTGCGGTCCTT 58.668 39.130 0.00 0.00 0.00 3.36
86 87 3.950397 TGTTTCAAGATATTGCGGTCCT 58.050 40.909 0.00 0.00 0.00 3.85
87 88 4.900635 ATGTTTCAAGATATTGCGGTCC 57.099 40.909 0.00 0.00 0.00 4.46
88 89 4.963953 CGAATGTTTCAAGATATTGCGGTC 59.036 41.667 0.00 0.00 0.00 4.79
89 90 4.730613 GCGAATGTTTCAAGATATTGCGGT 60.731 41.667 0.00 0.00 0.00 5.68
90 91 3.725740 GCGAATGTTTCAAGATATTGCGG 59.274 43.478 0.00 0.00 0.00 5.69
91 92 3.725740 GGCGAATGTTTCAAGATATTGCG 59.274 43.478 0.00 0.00 0.00 4.85
92 93 4.671377 TGGCGAATGTTTCAAGATATTGC 58.329 39.130 0.00 0.00 0.00 3.56
93 94 5.066375 TCCTGGCGAATGTTTCAAGATATTG 59.934 40.000 0.00 0.00 0.00 1.90
94 95 5.192927 TCCTGGCGAATGTTTCAAGATATT 58.807 37.500 0.00 0.00 0.00 1.28
95 96 4.780815 TCCTGGCGAATGTTTCAAGATAT 58.219 39.130 0.00 0.00 0.00 1.63
96 97 4.214986 TCCTGGCGAATGTTTCAAGATA 57.785 40.909 0.00 0.00 0.00 1.98
97 98 3.071874 TCCTGGCGAATGTTTCAAGAT 57.928 42.857 0.00 0.00 0.00 2.40
98 99 2.559698 TCCTGGCGAATGTTTCAAGA 57.440 45.000 0.00 0.00 0.00 3.02
99 100 3.855689 ATTCCTGGCGAATGTTTCAAG 57.144 42.857 0.00 0.00 39.84 3.02
107 108 1.212688 TGTCATCCATTCCTGGCGAAT 59.787 47.619 0.00 0.00 42.80 3.34
108 109 0.617935 TGTCATCCATTCCTGGCGAA 59.382 50.000 0.00 0.00 42.80 4.70
109 110 0.839277 ATGTCATCCATTCCTGGCGA 59.161 50.000 0.00 0.00 42.80 5.54
110 111 1.683943 AATGTCATCCATTCCTGGCG 58.316 50.000 0.00 0.00 39.66 5.69
111 112 2.482490 GCAAATGTCATCCATTCCTGGC 60.482 50.000 0.00 0.00 43.04 4.85
112 113 2.761767 TGCAAATGTCATCCATTCCTGG 59.238 45.455 0.00 0.00 43.04 4.45
113 114 4.459390 TTGCAAATGTCATCCATTCCTG 57.541 40.909 0.00 0.00 43.04 3.86
114 115 4.618927 CGTTTGCAAATGTCATCCATTCCT 60.619 41.667 21.00 0.00 43.04 3.36
115 116 3.613737 CGTTTGCAAATGTCATCCATTCC 59.386 43.478 21.00 0.93 43.04 3.01
116 117 4.236935 ACGTTTGCAAATGTCATCCATTC 58.763 39.130 27.44 4.78 43.04 2.67
117 118 4.255833 ACGTTTGCAAATGTCATCCATT 57.744 36.364 27.44 6.18 45.81 3.16
118 119 3.940209 ACGTTTGCAAATGTCATCCAT 57.060 38.095 27.44 6.88 32.99 3.41
119 120 3.724508 AACGTTTGCAAATGTCATCCA 57.275 38.095 31.51 0.00 37.16 3.41
120 121 5.402464 AAAAACGTTTGCAAATGTCATCC 57.598 34.783 31.51 10.11 37.16 3.51
121 122 5.234116 AGGAAAAACGTTTGCAAATGTCATC 59.766 36.000 31.51 26.48 37.52 2.92
122 123 5.115480 AGGAAAAACGTTTGCAAATGTCAT 58.885 33.333 31.51 22.18 37.52 3.06
123 124 4.499183 AGGAAAAACGTTTGCAAATGTCA 58.501 34.783 31.51 0.05 37.52 3.58
124 125 4.564769 TGAGGAAAAACGTTTGCAAATGTC 59.435 37.500 31.51 20.68 37.52 3.06
125 126 4.328712 GTGAGGAAAAACGTTTGCAAATGT 59.671 37.500 27.44 27.44 37.52 2.71
126 127 4.328440 TGTGAGGAAAAACGTTTGCAAATG 59.672 37.500 26.15 26.15 37.52 2.32
127 128 4.499183 TGTGAGGAAAAACGTTTGCAAAT 58.501 34.783 16.21 0.00 37.52 2.32
128 129 3.914312 TGTGAGGAAAAACGTTTGCAAA 58.086 36.364 15.46 8.05 37.52 3.68
129 130 3.577649 TGTGAGGAAAAACGTTTGCAA 57.422 38.095 15.46 0.00 37.52 4.08
130 131 3.057174 AGTTGTGAGGAAAAACGTTTGCA 60.057 39.130 15.46 5.59 37.52 4.08
131 132 3.507786 AGTTGTGAGGAAAAACGTTTGC 58.492 40.909 15.46 9.82 35.42 3.68
132 133 7.569677 TTAAAGTTGTGAGGAAAAACGTTTG 57.430 32.000 15.46 0.00 30.16 2.93
133 134 8.652463 CAATTAAAGTTGTGAGGAAAAACGTTT 58.348 29.630 7.96 7.96 30.16 3.60
134 135 8.030106 TCAATTAAAGTTGTGAGGAAAAACGTT 58.970 29.630 0.00 0.00 31.87 3.99
135 136 7.540299 TCAATTAAAGTTGTGAGGAAAAACGT 58.460 30.769 0.00 0.00 0.00 3.99
136 137 7.979115 TCAATTAAAGTTGTGAGGAAAAACG 57.021 32.000 0.00 0.00 0.00 3.60
139 140 9.801873 CTCTTTCAATTAAAGTTGTGAGGAAAA 57.198 29.630 0.00 0.00 44.27 2.29
140 141 9.184523 TCTCTTTCAATTAAAGTTGTGAGGAAA 57.815 29.630 0.00 0.00 44.27 3.13
141 142 8.746052 TCTCTTTCAATTAAAGTTGTGAGGAA 57.254 30.769 0.00 0.00 44.27 3.36
142 143 8.786898 CATCTCTTTCAATTAAAGTTGTGAGGA 58.213 33.333 0.00 0.00 44.27 3.71
143 144 8.571336 ACATCTCTTTCAATTAAAGTTGTGAGG 58.429 33.333 0.00 0.00 44.27 3.86
144 145 9.604626 GACATCTCTTTCAATTAAAGTTGTGAG 57.395 33.333 0.00 0.00 44.27 3.51
145 146 9.119418 TGACATCTCTTTCAATTAAAGTTGTGA 57.881 29.630 0.00 0.00 44.27 3.58
146 147 9.903682 ATGACATCTCTTTCAATTAAAGTTGTG 57.096 29.630 0.00 0.00 44.27 3.33
155 156 8.025445 CCGAAGAAAATGACATCTCTTTCAATT 58.975 33.333 11.91 1.70 31.56 2.32
156 157 7.391554 TCCGAAGAAAATGACATCTCTTTCAAT 59.608 33.333 11.91 3.11 31.56 2.57
157 158 6.710295 TCCGAAGAAAATGACATCTCTTTCAA 59.290 34.615 11.91 2.10 31.56 2.69
158 159 6.230472 TCCGAAGAAAATGACATCTCTTTCA 58.770 36.000 11.91 0.00 31.56 2.69
159 160 6.727824 TCCGAAGAAAATGACATCTCTTTC 57.272 37.500 11.91 8.07 0.00 2.62
160 161 6.936900 TCTTCCGAAGAAAATGACATCTCTTT 59.063 34.615 8.45 0.01 33.83 2.52
161 162 6.467677 TCTTCCGAAGAAAATGACATCTCTT 58.532 36.000 8.45 10.90 33.83 2.85
162 163 6.042638 TCTTCCGAAGAAAATGACATCTCT 57.957 37.500 8.45 0.00 33.83 3.10
163 164 5.220567 GCTCTTCCGAAGAAAATGACATCTC 60.221 44.000 11.94 0.00 37.02 2.75
164 165 4.633565 GCTCTTCCGAAGAAAATGACATCT 59.366 41.667 11.94 0.00 37.02 2.90
165 166 4.393062 TGCTCTTCCGAAGAAAATGACATC 59.607 41.667 11.94 0.00 37.02 3.06
166 167 4.326826 TGCTCTTCCGAAGAAAATGACAT 58.673 39.130 11.94 0.00 37.02 3.06
167 168 3.738982 TGCTCTTCCGAAGAAAATGACA 58.261 40.909 11.94 2.02 37.02 3.58
168 169 4.954092 ATGCTCTTCCGAAGAAAATGAC 57.046 40.909 11.94 0.00 37.02 3.06
169 170 7.987458 ACTATTATGCTCTTCCGAAGAAAATGA 59.013 33.333 11.94 6.10 37.02 2.57
170 171 8.147642 ACTATTATGCTCTTCCGAAGAAAATG 57.852 34.615 11.94 2.04 37.02 2.32
171 172 8.738645 AACTATTATGCTCTTCCGAAGAAAAT 57.261 30.769 11.94 10.35 37.02 1.82
172 173 8.561738 AAACTATTATGCTCTTCCGAAGAAAA 57.438 30.769 11.94 3.94 37.02 2.29
173 174 8.561738 AAAACTATTATGCTCTTCCGAAGAAA 57.438 30.769 11.94 4.17 37.02 2.52
174 175 8.561738 AAAAACTATTATGCTCTTCCGAAGAA 57.438 30.769 11.94 0.00 37.02 2.52
196 197 7.582435 TTTTTAAATGTCGTCTGTGCAAAAA 57.418 28.000 0.00 0.00 0.00 1.94
219 220 9.321562 GATCAAAATCATGCTGATGGTATTTTT 57.678 29.630 4.73 0.00 37.15 1.94
220 221 8.479689 TGATCAAAATCATGCTGATGGTATTTT 58.520 29.630 0.00 0.00 37.15 1.82
221 222 8.014070 TGATCAAAATCATGCTGATGGTATTT 57.986 30.769 0.00 0.00 37.15 1.40
222 223 7.504574 TCTGATCAAAATCATGCTGATGGTATT 59.495 33.333 0.00 0.00 41.05 1.89
223 224 7.002276 TCTGATCAAAATCATGCTGATGGTAT 58.998 34.615 0.00 0.00 41.05 2.73
224 225 6.358991 TCTGATCAAAATCATGCTGATGGTA 58.641 36.000 0.00 0.00 41.05 3.25
225 226 5.198207 TCTGATCAAAATCATGCTGATGGT 58.802 37.500 0.00 0.00 41.05 3.55
226 227 5.767816 TCTGATCAAAATCATGCTGATGG 57.232 39.130 0.00 0.31 41.05 3.51
227 228 6.152379 CCATCTGATCAAAATCATGCTGATG 58.848 40.000 0.00 2.33 41.05 3.07
228 229 5.279006 GCCATCTGATCAAAATCATGCTGAT 60.279 40.000 0.00 0.00 41.05 2.90
229 230 4.037565 GCCATCTGATCAAAATCATGCTGA 59.962 41.667 0.00 0.00 41.05 4.26
230 231 4.299155 GCCATCTGATCAAAATCATGCTG 58.701 43.478 0.00 0.00 41.05 4.41
231 232 3.321111 GGCCATCTGATCAAAATCATGCT 59.679 43.478 0.00 0.00 41.05 3.79
232 233 3.650139 GGCCATCTGATCAAAATCATGC 58.350 45.455 0.00 0.00 41.05 4.06
233 234 3.317149 ACGGCCATCTGATCAAAATCATG 59.683 43.478 2.24 0.00 41.05 3.07
234 235 3.317149 CACGGCCATCTGATCAAAATCAT 59.683 43.478 2.24 0.00 41.05 2.45
235 236 2.684374 CACGGCCATCTGATCAAAATCA 59.316 45.455 2.24 0.00 39.63 2.57
236 237 2.542411 GCACGGCCATCTGATCAAAATC 60.542 50.000 2.24 0.00 0.00 2.17
237 238 1.406539 GCACGGCCATCTGATCAAAAT 59.593 47.619 2.24 0.00 0.00 1.82
238 239 0.810648 GCACGGCCATCTGATCAAAA 59.189 50.000 2.24 0.00 0.00 2.44
239 240 0.322366 TGCACGGCCATCTGATCAAA 60.322 50.000 2.24 0.00 0.00 2.69
240 241 0.745486 CTGCACGGCCATCTGATCAA 60.745 55.000 2.24 0.00 0.00 2.57
241 242 1.153309 CTGCACGGCCATCTGATCA 60.153 57.895 2.24 0.00 0.00 2.92
242 243 1.890979 CCTGCACGGCCATCTGATC 60.891 63.158 2.24 0.00 0.00 2.92
243 244 2.191375 CCTGCACGGCCATCTGAT 59.809 61.111 2.24 0.00 0.00 2.90
252 253 3.803082 CGGTGAATGCCTGCACGG 61.803 66.667 0.00 0.00 35.91 4.94
253 254 3.803082 CCGGTGAATGCCTGCACG 61.803 66.667 0.00 0.00 35.91 5.34
254 255 3.443045 CCCGGTGAATGCCTGCAC 61.443 66.667 0.00 0.00 0.00 4.57
255 256 3.645660 TCCCGGTGAATGCCTGCA 61.646 61.111 0.00 0.00 0.00 4.41
256 257 3.134127 GTCCCGGTGAATGCCTGC 61.134 66.667 0.00 0.00 0.00 4.85
257 258 2.438434 GGTCCCGGTGAATGCCTG 60.438 66.667 0.00 0.00 0.00 4.85
258 259 2.610859 AGGTCCCGGTGAATGCCT 60.611 61.111 0.00 0.00 0.00 4.75
259 260 2.124695 GAGGTCCCGGTGAATGCC 60.125 66.667 0.00 0.00 0.00 4.40
260 261 2.124695 GGAGGTCCCGGTGAATGC 60.125 66.667 0.00 0.00 0.00 3.56
274 275 3.124921 AAACATTCGCCGCGGGAG 61.125 61.111 29.38 13.45 0.00 4.30
275 276 3.427425 CAAACATTCGCCGCGGGA 61.427 61.111 29.38 19.62 0.00 5.14
282 283 5.971895 ATGATAAATTGGCAAACATTCGC 57.028 34.783 3.01 0.00 0.00 4.70
283 284 7.305935 CGGTAATGATAAATTGGCAAACATTCG 60.306 37.037 3.01 8.46 0.00 3.34
284 285 7.491048 ACGGTAATGATAAATTGGCAAACATTC 59.509 33.333 3.01 0.32 0.00 2.67
285 286 7.327214 ACGGTAATGATAAATTGGCAAACATT 58.673 30.769 3.01 12.95 0.00 2.71
286 287 6.872920 ACGGTAATGATAAATTGGCAAACAT 58.127 32.000 3.01 3.00 0.00 2.71
287 288 6.274157 ACGGTAATGATAAATTGGCAAACA 57.726 33.333 3.01 0.59 0.00 2.83
288 289 6.588373 ACAACGGTAATGATAAATTGGCAAAC 59.412 34.615 3.01 0.00 0.00 2.93
289 290 6.692486 ACAACGGTAATGATAAATTGGCAAA 58.308 32.000 3.01 0.00 0.00 3.68
290 291 6.274157 ACAACGGTAATGATAAATTGGCAA 57.726 33.333 0.68 0.68 0.00 4.52
291 292 5.906113 ACAACGGTAATGATAAATTGGCA 57.094 34.783 0.00 0.00 0.00 4.92
292 293 8.690680 TTTAACAACGGTAATGATAAATTGGC 57.309 30.769 0.00 0.00 0.00 4.52
297 298 9.011095 TGTCCATTTAACAACGGTAATGATAAA 57.989 29.630 2.87 1.31 32.12 1.40
318 320 0.457851 CCAACTTTTGGCGTTGTCCA 59.542 50.000 0.00 0.00 45.17 4.02
319 321 3.266282 CCAACTTTTGGCGTTGTCC 57.734 52.632 0.00 0.00 45.17 4.02
340 342 1.437735 CGCTAATCTCGCGCAATGC 60.438 57.895 8.75 0.00 44.33 3.56
470 474 4.956075 ACCACCATGAATCAAGGGATAAAC 59.044 41.667 9.47 0.00 32.09 2.01
613 635 2.941025 TTTGAGGGAGGGGGCAGG 60.941 66.667 0.00 0.00 0.00 4.85
614 636 2.356667 GTTTGAGGGAGGGGGCAG 59.643 66.667 0.00 0.00 0.00 4.85
615 637 3.264845 GGTTTGAGGGAGGGGGCA 61.265 66.667 0.00 0.00 0.00 5.36
616 638 3.264845 TGGTTTGAGGGAGGGGGC 61.265 66.667 0.00 0.00 0.00 5.80
641 665 0.963355 AGAGAGAGAGACACGGTGGC 60.963 60.000 13.48 9.95 0.00 5.01
642 666 1.091537 GAGAGAGAGAGACACGGTGG 58.908 60.000 13.48 0.00 0.00 4.61
644 668 1.906574 AGAGAGAGAGAGAGACACGGT 59.093 52.381 0.00 0.00 0.00 4.83
646 670 3.448686 GAGAGAGAGAGAGAGAGACACG 58.551 54.545 0.00 0.00 0.00 4.49
647 671 3.452627 AGGAGAGAGAGAGAGAGAGACAC 59.547 52.174 0.00 0.00 0.00 3.67
648 672 3.706594 GAGGAGAGAGAGAGAGAGAGACA 59.293 52.174 0.00 0.00 0.00 3.41
694 724 1.237285 ACGCGCTTTGCCAGATTTCT 61.237 50.000 5.73 0.00 42.08 2.52
887 929 4.660938 GTGAGGTGGGTGGGTGGC 62.661 72.222 0.00 0.00 0.00 5.01
888 930 2.854032 AGTGAGGTGGGTGGGTGG 60.854 66.667 0.00 0.00 0.00 4.61
889 931 2.750350 GAGTGAGGTGGGTGGGTG 59.250 66.667 0.00 0.00 0.00 4.61
890 932 2.529389 GGAGTGAGGTGGGTGGGT 60.529 66.667 0.00 0.00 0.00 4.51
891 933 2.529136 TGGAGTGAGGTGGGTGGG 60.529 66.667 0.00 0.00 0.00 4.61
903 945 3.559657 GACGAGCGTGCAGTGGAGT 62.560 63.158 0.00 0.00 0.00 3.85
926 968 1.203187 ACTGTGCCCTCCTCTCAGTAA 60.203 52.381 0.00 0.00 37.55 2.24
927 969 0.409876 ACTGTGCCCTCCTCTCAGTA 59.590 55.000 0.00 0.00 37.55 2.74
928 970 1.157276 ACTGTGCCCTCCTCTCAGT 59.843 57.895 0.00 0.00 35.03 3.41
929 971 1.595882 CACTGTGCCCTCCTCTCAG 59.404 63.158 0.00 0.00 0.00 3.35
930 972 1.915266 CCACTGTGCCCTCCTCTCA 60.915 63.158 1.29 0.00 0.00 3.27
931 973 2.664081 CCCACTGTGCCCTCCTCTC 61.664 68.421 1.29 0.00 0.00 3.20
932 974 2.608988 CCCACTGTGCCCTCCTCT 60.609 66.667 1.29 0.00 0.00 3.69
933 975 4.416738 GCCCACTGTGCCCTCCTC 62.417 72.222 1.29 0.00 0.00 3.71
954 1019 1.538687 AAACTCCTACCACCGACGGG 61.539 60.000 20.00 7.12 40.11 5.28
955 1020 0.389426 CAAACTCCTACCACCGACGG 60.389 60.000 13.61 13.61 0.00 4.79
989 1054 3.681034 CGACATCTTCATTTCCAGCCTCT 60.681 47.826 0.00 0.00 0.00 3.69
1086 1151 2.401351 GTGACGTTCCAGGTGTAGAAC 58.599 52.381 0.00 0.00 39.19 3.01
1173 1238 0.731417 ACGAAGATGCAGAGCAATGC 59.269 50.000 0.00 0.00 43.62 3.56
1174 1239 1.329906 GGACGAAGATGCAGAGCAATG 59.670 52.381 0.00 0.00 43.62 2.82
1175 1240 1.209019 AGGACGAAGATGCAGAGCAAT 59.791 47.619 0.00 0.00 43.62 3.56
1176 1241 0.610174 AGGACGAAGATGCAGAGCAA 59.390 50.000 0.00 0.00 43.62 3.91
1177 1242 0.174389 GAGGACGAAGATGCAGAGCA 59.826 55.000 0.00 0.00 44.86 4.26
1178 1243 0.459489 AGAGGACGAAGATGCAGAGC 59.541 55.000 0.00 0.00 0.00 4.09
1179 1244 2.426738 AGAAGAGGACGAAGATGCAGAG 59.573 50.000 0.00 0.00 0.00 3.35
1180 1245 2.425312 GAGAAGAGGACGAAGATGCAGA 59.575 50.000 0.00 0.00 0.00 4.26
1181 1246 2.481104 GGAGAAGAGGACGAAGATGCAG 60.481 54.545 0.00 0.00 0.00 4.41
1182 1247 1.478510 GGAGAAGAGGACGAAGATGCA 59.521 52.381 0.00 0.00 0.00 3.96
1183 1248 1.754226 AGGAGAAGAGGACGAAGATGC 59.246 52.381 0.00 0.00 0.00 3.91
1184 1249 3.948473 TGTAGGAGAAGAGGACGAAGATG 59.052 47.826 0.00 0.00 0.00 2.90
1185 1250 4.237976 TGTAGGAGAAGAGGACGAAGAT 57.762 45.455 0.00 0.00 0.00 2.40
1186 1251 3.715638 TGTAGGAGAAGAGGACGAAGA 57.284 47.619 0.00 0.00 0.00 2.87
1187 1252 3.316868 GGATGTAGGAGAAGAGGACGAAG 59.683 52.174 0.00 0.00 0.00 3.79
1188 1253 3.053544 AGGATGTAGGAGAAGAGGACGAA 60.054 47.826 0.00 0.00 0.00 3.85
1189 1254 2.510382 AGGATGTAGGAGAAGAGGACGA 59.490 50.000 0.00 0.00 0.00 4.20
1190 1255 2.882137 GAGGATGTAGGAGAAGAGGACG 59.118 54.545 0.00 0.00 0.00 4.79
1191 1256 4.178956 AGAGGATGTAGGAGAAGAGGAC 57.821 50.000 0.00 0.00 0.00 3.85
1192 1257 4.480537 AGAAGAGGATGTAGGAGAAGAGGA 59.519 45.833 0.00 0.00 0.00 3.71
1193 1258 4.803452 AGAAGAGGATGTAGGAGAAGAGG 58.197 47.826 0.00 0.00 0.00 3.69
1194 1259 6.607198 AGAAAGAAGAGGATGTAGGAGAAGAG 59.393 42.308 0.00 0.00 0.00 2.85
1195 1260 6.498538 AGAAAGAAGAGGATGTAGGAGAAGA 58.501 40.000 0.00 0.00 0.00 2.87
1196 1261 6.183360 GGAGAAAGAAGAGGATGTAGGAGAAG 60.183 46.154 0.00 0.00 0.00 2.85
1197 1262 5.659079 GGAGAAAGAAGAGGATGTAGGAGAA 59.341 44.000 0.00 0.00 0.00 2.87
1198 1263 5.043732 AGGAGAAAGAAGAGGATGTAGGAGA 60.044 44.000 0.00 0.00 0.00 3.71
1199 1264 5.208121 AGGAGAAAGAAGAGGATGTAGGAG 58.792 45.833 0.00 0.00 0.00 3.69
1200 1265 5.213868 AGGAGAAAGAAGAGGATGTAGGA 57.786 43.478 0.00 0.00 0.00 2.94
1201 1266 5.660864 AGAAGGAGAAAGAAGAGGATGTAGG 59.339 44.000 0.00 0.00 0.00 3.18
1204 1269 5.802821 GCAAGAAGGAGAAAGAAGAGGATGT 60.803 44.000 0.00 0.00 0.00 3.06
1206 1271 4.535692 AGCAAGAAGGAGAAAGAAGAGGAT 59.464 41.667 0.00 0.00 0.00 3.24
1209 1274 4.931002 CAGAGCAAGAAGGAGAAAGAAGAG 59.069 45.833 0.00 0.00 0.00 2.85
1220 1285 2.225963 CAGCAGAAACAGAGCAAGAAGG 59.774 50.000 0.00 0.00 0.00 3.46
1323 1406 4.214119 CAGGTTGTTGAAGACGTTGATGAT 59.786 41.667 0.00 0.00 0.00 2.45
1358 1441 7.791766 AGAAAGGATAATTACCATGAGAGGAGA 59.208 37.037 0.00 0.00 0.00 3.71
1367 1450 9.008584 AGAGGAAGAAGAAAGGATAATTACCAT 57.991 33.333 6.80 0.00 0.00 3.55
1380 1474 2.569404 GCAGGAGGAGAGGAAGAAGAAA 59.431 50.000 0.00 0.00 0.00 2.52
1390 1484 3.151022 GGACGGGCAGGAGGAGAG 61.151 72.222 0.00 0.00 0.00 3.20
1393 1487 4.051167 TACGGACGGGCAGGAGGA 62.051 66.667 0.00 0.00 0.00 3.71
1394 1488 3.834799 GTACGGACGGGCAGGAGG 61.835 72.222 0.00 0.00 0.00 4.30
1395 1489 4.189188 CGTACGGACGGGCAGGAG 62.189 72.222 13.75 0.00 45.63 3.69
1404 1498 1.134226 CACAGTGGAAACGTACGGAC 58.866 55.000 21.06 9.90 0.00 4.79
1405 1499 0.598158 GCACAGTGGAAACGTACGGA 60.598 55.000 21.06 0.00 0.00 4.69
1444 1538 4.737054 CTTCAAATGAACAGCGGCTAATT 58.263 39.130 0.26 0.00 0.00 1.40
1445 1539 3.428045 GCTTCAAATGAACAGCGGCTAAT 60.428 43.478 0.26 0.00 0.00 1.73
1448 1542 0.242017 GCTTCAAATGAACAGCGGCT 59.758 50.000 0.00 0.00 0.00 5.52
1463 1557 3.096791 GCATCTGTGCCGAGCTTC 58.903 61.111 0.00 0.00 45.76 3.86
1541 1638 6.016360 GGCATGAATATATGTGTGGCAGTTAA 60.016 38.462 0.00 0.00 33.04 2.01
1549 1646 4.213906 TGCGAAGGCATGAATATATGTGTG 59.786 41.667 0.00 0.00 46.21 3.82
1565 1662 7.334844 TCTAGACCATATATACATGCGAAGG 57.665 40.000 0.00 0.00 0.00 3.46
1616 2110 4.687901 AACAGAAAGGGGAAAAACATGG 57.312 40.909 0.00 0.00 0.00 3.66
1641 2151 4.348863 AGTTTCAGTGAAGAGATGCTGT 57.651 40.909 5.56 0.00 0.00 4.40
1644 2155 3.614616 CGGTAGTTTCAGTGAAGAGATGC 59.385 47.826 5.56 0.00 0.00 3.91
1648 2160 2.299297 ACCCGGTAGTTTCAGTGAAGAG 59.701 50.000 5.56 0.00 0.00 2.85
1650 2162 2.833631 ACCCGGTAGTTTCAGTGAAG 57.166 50.000 5.56 0.00 0.00 3.02
1653 2165 3.126343 GCATTTACCCGGTAGTTTCAGTG 59.874 47.826 0.00 0.00 0.00 3.66
1682 2194 9.178427 GACGTATATAGGTAGCAGTGTAAAAAG 57.822 37.037 8.03 0.00 0.00 2.27
1693 2205 4.913924 CCAACAACGACGTATATAGGTAGC 59.086 45.833 13.51 1.19 0.00 3.58
1696 2208 3.130869 TGCCAACAACGACGTATATAGGT 59.869 43.478 7.79 7.79 0.00 3.08
1717 2229 7.829725 TCACATTTGGAAAATAACTCTCCATG 58.170 34.615 0.00 0.00 38.99 3.66
1776 2290 1.672356 GTTGCGCAGGTGATGTCCT 60.672 57.895 11.31 0.00 38.51 3.85
1777 2291 1.915614 CTGTTGCGCAGGTGATGTCC 61.916 60.000 11.31 0.00 41.42 4.02
1814 2331 7.876068 TCGATCTACTGAACCAAATTTAACTGT 59.124 33.333 0.00 0.00 0.00 3.55
1952 2469 2.484264 AGAGCTAAACAAATGCCGACAC 59.516 45.455 0.00 0.00 0.00 3.67
1959 2476 4.755411 TCCGGTCTAGAGCTAAACAAATG 58.245 43.478 19.17 1.06 0.00 2.32
2040 2557 1.332375 CACGGCCGAAAGAAGTTGAAA 59.668 47.619 35.90 0.00 0.00 2.69
2043 2560 1.082104 GCACGGCCGAAAGAAGTTG 60.082 57.895 35.90 18.33 0.00 3.16
2074 2591 4.142381 CGTTCACCACTGATCTGATCTGTA 60.142 45.833 23.96 10.60 39.09 2.74
2167 2684 2.436646 AAGCCAGGAACCGCATCG 60.437 61.111 0.00 0.00 0.00 3.84
2205 2722 7.351454 AGTTGGGGGATATAAGTTACATGGTTA 59.649 37.037 0.00 0.00 0.00 2.85
2226 2743 2.106844 GCGATAAGGCCCAAGTTGG 58.893 57.895 15.52 15.52 37.25 3.77
2235 2752 1.202302 GGCTTTTCTTGGCGATAAGGC 60.202 52.381 0.00 0.00 44.41 4.35
2236 2753 2.091541 TGGCTTTTCTTGGCGATAAGG 58.908 47.619 0.00 0.00 33.07 2.69
2238 2755 1.466950 CGTGGCTTTTCTTGGCGATAA 59.533 47.619 0.00 0.00 0.00 1.75
2240 2757 0.889186 ACGTGGCTTTTCTTGGCGAT 60.889 50.000 0.00 0.00 0.00 4.58
2241 2758 1.525077 ACGTGGCTTTTCTTGGCGA 60.525 52.632 0.00 0.00 0.00 5.54
2242 2759 1.370414 CACGTGGCTTTTCTTGGCG 60.370 57.895 7.95 0.00 0.00 5.69
2244 2761 3.369546 AATTCACGTGGCTTTTCTTGG 57.630 42.857 17.00 0.00 0.00 3.61
2245 2762 5.108385 AGTAATTCACGTGGCTTTTCTTG 57.892 39.130 17.00 0.00 0.00 3.02
2248 2765 6.523201 CACAATAGTAATTCACGTGGCTTTTC 59.477 38.462 17.00 5.29 0.00 2.29
2249 2766 6.205853 TCACAATAGTAATTCACGTGGCTTTT 59.794 34.615 17.00 7.03 0.00 2.27
2251 2768 5.242434 TCACAATAGTAATTCACGTGGCTT 58.758 37.500 17.00 11.81 0.00 4.35
2253 2770 5.539582 TTCACAATAGTAATTCACGTGGC 57.460 39.130 17.00 1.50 0.00 5.01
2255 2772 8.495949 ACTTCTTTCACAATAGTAATTCACGTG 58.504 33.333 9.94 9.94 0.00 4.49
2256 2773 8.603242 ACTTCTTTCACAATAGTAATTCACGT 57.397 30.769 0.00 0.00 0.00 4.49
2257 2774 9.953825 GTACTTCTTTCACAATAGTAATTCACG 57.046 33.333 0.00 0.00 0.00 4.35
2264 2781 9.151471 GCTTCATGTACTTCTTTCACAATAGTA 57.849 33.333 0.00 0.00 0.00 1.82
2266 2783 8.173775 CAGCTTCATGTACTTCTTTCACAATAG 58.826 37.037 0.00 0.00 0.00 1.73
2278 2821 8.043710 ACTATTTAGAAGCAGCTTCATGTACTT 58.956 33.333 32.20 15.32 42.37 2.24
2280 2823 7.778470 ACTATTTAGAAGCAGCTTCATGTAC 57.222 36.000 32.20 9.33 42.37 2.90
2282 2825 7.065563 CAGAACTATTTAGAAGCAGCTTCATGT 59.934 37.037 32.20 17.31 42.37 3.21
2283 2826 7.065563 ACAGAACTATTTAGAAGCAGCTTCATG 59.934 37.037 32.20 18.24 42.37 3.07
2287 2830 7.751768 AAACAGAACTATTTAGAAGCAGCTT 57.248 32.000 7.60 7.60 0.00 3.74
2288 2831 9.103861 GATAAACAGAACTATTTAGAAGCAGCT 57.896 33.333 0.00 0.00 0.00 4.24
2289 2832 8.883731 TGATAAACAGAACTATTTAGAAGCAGC 58.116 33.333 0.00 0.00 0.00 5.25
2317 2860 2.739885 ATTCAGCATCGCTAGCCTAG 57.260 50.000 9.66 0.00 36.40 3.02
2319 2863 2.338577 AAATTCAGCATCGCTAGCCT 57.661 45.000 9.66 0.00 36.40 4.58
2320 2905 4.035675 AGTTAAAATTCAGCATCGCTAGCC 59.964 41.667 9.66 0.00 36.40 3.93
2325 2910 4.475944 ACACAGTTAAAATTCAGCATCGC 58.524 39.130 0.00 0.00 0.00 4.58
2327 2912 6.922957 TCCAAACACAGTTAAAATTCAGCATC 59.077 34.615 0.00 0.00 0.00 3.91
2330 2915 6.291585 CGTTCCAAACACAGTTAAAATTCAGC 60.292 38.462 0.00 0.00 0.00 4.26
2345 2930 1.523515 CAATCGTCGTCGTTCCAAACA 59.476 47.619 1.33 0.00 38.33 2.83
2346 2931 1.136446 CCAATCGTCGTCGTTCCAAAC 60.136 52.381 1.33 0.00 38.33 2.93
2350 2999 0.109412 AGTCCAATCGTCGTCGTTCC 60.109 55.000 1.33 0.00 38.33 3.62
2351 3000 0.982673 CAGTCCAATCGTCGTCGTTC 59.017 55.000 1.33 0.00 38.33 3.95
2354 3003 2.497092 CGCAGTCCAATCGTCGTCG 61.497 63.158 0.00 0.00 38.55 5.12
2356 3005 0.241749 TTACGCAGTCCAATCGTCGT 59.758 50.000 0.00 0.00 43.93 4.34
2358 3007 2.927477 TCATTTACGCAGTCCAATCGTC 59.073 45.455 0.00 0.00 43.93 4.20
2360 3009 4.536364 ATTCATTTACGCAGTCCAATCG 57.464 40.909 0.00 0.00 43.93 3.34
2361 3010 5.444122 GCTATTCATTTACGCAGTCCAATC 58.556 41.667 0.00 0.00 43.93 2.67
2362 3011 4.024893 CGCTATTCATTTACGCAGTCCAAT 60.025 41.667 0.00 0.00 43.93 3.16
2373 3022 7.223971 GTCAGACCATGTTACGCTATTCATTTA 59.776 37.037 0.00 0.00 0.00 1.40
2377 3026 4.430007 GTCAGACCATGTTACGCTATTCA 58.570 43.478 0.00 0.00 0.00 2.57
2378 3027 3.486108 CGTCAGACCATGTTACGCTATTC 59.514 47.826 0.00 0.00 0.00 1.75
2386 3035 0.682292 TGCACCGTCAGACCATGTTA 59.318 50.000 0.00 0.00 0.00 2.41
2387 3036 0.036732 ATGCACCGTCAGACCATGTT 59.963 50.000 0.00 0.00 0.00 2.71
2388 3037 0.901827 TATGCACCGTCAGACCATGT 59.098 50.000 0.00 0.00 0.00 3.21
2392 3041 0.246635 AGTGTATGCACCGTCAGACC 59.753 55.000 10.59 0.00 46.35 3.85
2494 3147 3.814842 TGAACTGCATGTTGTAGGTGAAG 59.185 43.478 6.31 0.00 39.30 3.02
2659 3312 0.249868 TGAGCTTGAACCAGTCACCG 60.250 55.000 0.00 0.00 35.39 4.94
2772 3443 3.057736 CACTGTCCAGAATGCCTTTCAAG 60.058 47.826 0.40 0.00 36.75 3.02
2817 3488 0.890996 GGCCATTGATAAGGAGCCCG 60.891 60.000 0.00 0.00 34.23 6.13
2853 3524 3.853207 ACCTTGGTCTACTGTGAACCTA 58.147 45.455 12.69 6.30 0.00 3.08
2880 3551 2.408271 TGGGCTGCTTTACTCTGATG 57.592 50.000 0.00 0.00 0.00 3.07
2881 3552 3.439857 TTTGGGCTGCTTTACTCTGAT 57.560 42.857 0.00 0.00 0.00 2.90
2911 3587 8.318412 TCTGTCTTACCAAATATGAAGTGCTTA 58.682 33.333 0.00 0.00 0.00 3.09
2915 3591 7.819415 TGTCTCTGTCTTACCAAATATGAAGTG 59.181 37.037 0.00 0.00 0.00 3.16
2927 3603 4.273148 ACAACCATGTCTCTGTCTTACC 57.727 45.455 0.00 0.00 33.41 2.85
2929 3605 5.773176 TCAGTACAACCATGTCTCTGTCTTA 59.227 40.000 0.00 0.00 41.05 2.10
2930 3606 4.588951 TCAGTACAACCATGTCTCTGTCTT 59.411 41.667 0.00 0.00 41.05 3.01
2942 3618 4.948341 TGAAGCTAGTTCAGTACAACCA 57.052 40.909 0.00 0.00 40.45 3.67
3112 3789 4.401657 GGACTGGCCTAGGTGGAT 57.598 61.111 11.31 0.00 38.35 3.41
3207 3884 1.302431 CATGGCGGTGTTGGTGAGA 60.302 57.895 0.00 0.00 0.00 3.27
3391 4070 5.766670 CCCAGCATATGTATGTGACTTCATT 59.233 40.000 4.29 0.00 36.11 2.57
3392 4071 5.072193 TCCCAGCATATGTATGTGACTTCAT 59.928 40.000 4.29 0.00 36.11 2.57
3414 4093 5.047377 AGAGAGTTTCAGTCATTCAGAGTCC 60.047 44.000 0.00 0.00 0.00 3.85
3415 4094 5.863397 CAGAGAGTTTCAGTCATTCAGAGTC 59.137 44.000 0.00 0.00 0.00 3.36
3441 4120 0.798776 GTTCCACCTGCGTTCATCAG 59.201 55.000 0.00 0.00 0.00 2.90
3496 4175 1.206371 ACTTGGCCATAGTGGTACGAC 59.794 52.381 6.09 0.00 40.46 4.34
3508 4187 1.885388 CGTCGTGTTCACTTGGCCA 60.885 57.895 0.00 0.00 0.00 5.36
3608 4287 4.003788 CTTGAGCGGGGTGTCGGT 62.004 66.667 0.00 0.00 43.85 4.69
3700 4379 2.754658 ACGGCCGTCTGGAGGTAG 60.755 66.667 28.70 0.00 37.49 3.18
3745 4424 1.602165 GCGTTCTCAAAGACGACCTCA 60.602 52.381 0.00 0.00 0.00 3.86
3802 4481 3.691342 CCGACGACCCAGAAGGCA 61.691 66.667 0.00 0.00 40.58 4.75
3835 4514 2.557317 CCCATGATTTGCAAGAATGGC 58.443 47.619 22.43 4.28 37.13 4.40
3836 4515 2.169769 AGCCCATGATTTGCAAGAATGG 59.830 45.455 21.51 21.51 38.01 3.16
3860 4548 7.176515 TCAGCCATACAAATCACTGTGTTAAAT 59.823 33.333 7.79 0.00 0.00 1.40
3865 4553 4.019792 TCAGCCATACAAATCACTGTGT 57.980 40.909 7.79 0.00 0.00 3.72
3866 4554 4.637091 TGATCAGCCATACAAATCACTGTG 59.363 41.667 0.17 0.17 0.00 3.66
3870 4558 6.381481 TCAATGATCAGCCATACAAATCAC 57.619 37.500 0.09 0.00 0.00 3.06
3887 4585 7.721409 TCATTTTCCATCCAGAAATCAATGA 57.279 32.000 0.00 0.00 35.74 2.57
3904 4602 3.426695 CGTCCATCCTGCAGTTCATTTTC 60.427 47.826 13.81 0.00 0.00 2.29
3913 4611 2.503061 CCTCCGTCCATCCTGCAG 59.497 66.667 6.78 6.78 0.00 4.41
3914 4612 3.083349 CCCTCCGTCCATCCTGCA 61.083 66.667 0.00 0.00 0.00 4.41
3915 4613 4.554036 GCCCTCCGTCCATCCTGC 62.554 72.222 0.00 0.00 0.00 4.85
4012 4710 0.034337 TTGGTTAGTCGGCTGTCACC 59.966 55.000 0.00 3.63 0.00 4.02
4019 4717 1.639298 CTGCTGCTTGGTTAGTCGGC 61.639 60.000 0.00 0.00 34.71 5.54
4020 4718 1.639298 GCTGCTGCTTGGTTAGTCGG 61.639 60.000 8.53 0.00 36.03 4.79
4021 4719 1.790387 GCTGCTGCTTGGTTAGTCG 59.210 57.895 8.53 0.00 36.03 4.18
4032 4730 1.807573 GACACCGTAGAGCTGCTGC 60.808 63.158 7.01 7.62 40.05 5.25
4033 4731 0.457509 CAGACACCGTAGAGCTGCTG 60.458 60.000 7.01 0.00 0.00 4.41
4034 4732 0.609406 TCAGACACCGTAGAGCTGCT 60.609 55.000 0.00 0.00 0.00 4.24
4038 4736 4.745649 ACTAAAATCAGACACCGTAGAGC 58.254 43.478 0.00 0.00 0.00 4.09
4040 4738 6.208007 TCAGAACTAAAATCAGACACCGTAGA 59.792 38.462 0.00 0.00 0.00 2.59
4043 4741 5.209818 TCAGAACTAAAATCAGACACCGT 57.790 39.130 0.00 0.00 0.00 4.83
4054 4774 7.151999 TGAAGCACAAAGTTCAGAACTAAAA 57.848 32.000 16.46 0.00 41.91 1.52
4102 4826 1.970640 TCCAGTGGCATGTATATCGCT 59.029 47.619 3.51 0.00 0.00 4.93
4108 4832 1.003118 ACGTTGTCCAGTGGCATGTAT 59.997 47.619 3.51 0.00 0.00 2.29
4117 4841 1.374947 CATCCCCACGTTGTCCAGT 59.625 57.895 0.00 0.00 0.00 4.00
4222 4946 2.499685 GGGATGGGGTTCTCGTCG 59.500 66.667 0.00 0.00 0.00 5.12
4296 5020 3.138304 CCTTCATGACACGGAAACTGAA 58.862 45.455 0.00 0.00 0.00 3.02
4299 5023 1.271379 CCCCTTCATGACACGGAAACT 60.271 52.381 0.00 0.00 0.00 2.66
4304 5028 0.673644 GTCACCCCTTCATGACACGG 60.674 60.000 0.00 0.00 43.89 4.94
4312 5036 2.568956 CTCAGATTCAGTCACCCCTTCA 59.431 50.000 0.00 0.00 0.00 3.02
4366 5090 3.823304 GACCATCTCAAAGCTTGTTTCCT 59.177 43.478 0.00 0.00 0.00 3.36
4368 5092 3.251004 ACGACCATCTCAAAGCTTGTTTC 59.749 43.478 0.00 0.00 0.00 2.78
4425 5179 3.539253 GCAAGATGCTTGCCATACG 57.461 52.632 18.66 0.00 40.96 3.06
4452 5206 5.240121 AGGCATTTTTGCAGTTCCAAATAG 58.760 37.500 0.00 0.00 34.92 1.73
4458 5212 7.848223 AAATATAAGGCATTTTTGCAGTTCC 57.152 32.000 0.00 0.00 36.33 3.62
4504 5258 7.819415 ACATATATCCATACCATCAACGAACAG 59.181 37.037 0.00 0.00 0.00 3.16
4506 5260 9.302345 CTACATATATCCATACCATCAACGAAC 57.698 37.037 0.00 0.00 0.00 3.95
4509 5263 9.468532 CATCTACATATATCCATACCATCAACG 57.531 37.037 0.00 0.00 0.00 4.10
4594 5349 9.781834 CAGTTTAATTCTTACTCACACAAAACA 57.218 29.630 0.00 0.00 0.00 2.83
4680 5441 1.546029 GCCATCCCAGAAAGGTTGTTC 59.454 52.381 0.00 0.00 34.66 3.18
4893 5654 3.133362 TCGACTGGTTAGTTGTCACCTTT 59.867 43.478 0.00 0.00 39.06 3.11
4945 5706 3.063997 CCTGGTATGAACGATGTTTGAGC 59.936 47.826 0.00 0.00 0.00 4.26
4964 5725 4.217767 TCCCATCGAGTATATTTCGTCCTG 59.782 45.833 8.76 6.25 39.05 3.86
5008 5806 6.676456 GCTCGACATTTTTGAAGCTCACATAT 60.676 38.462 0.00 0.00 0.00 1.78
5016 5814 3.058639 ACTCTGCTCGACATTTTTGAAGC 60.059 43.478 0.00 0.00 0.00 3.86
5063 5861 2.234661 CACCTCACTCTCATTGTAGGCA 59.765 50.000 0.00 0.00 0.00 4.75
5070 5868 0.548682 AGGGCCACCTCACTCTCATT 60.549 55.000 6.18 0.00 46.95 2.57
5081 5879 4.097361 GAGAACCCGAGGGCCACC 62.097 72.222 6.18 0.00 39.32 4.61
5183 5981 3.364023 GTGTTCGATAACTCAAGGTCACG 59.636 47.826 0.00 0.00 36.51 4.35
5204 6002 2.519013 GAGGGTGCCTTTTTCTCATGT 58.481 47.619 0.00 0.00 31.76 3.21
5207 6005 0.762418 TCGAGGGTGCCTTTTTCTCA 59.238 50.000 0.00 0.00 31.76 3.27
5224 6022 3.936372 TGGTAGAAACCTCTGACTTCG 57.064 47.619 0.00 0.00 46.91 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.