Multiple sequence alignment - TraesCS7A01G457900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G457900 chr7A 100.000 2613 0 0 1 2613 652904450 652901838 0.000000e+00 4826.0
1 TraesCS7A01G457900 chr7A 88.485 330 26 6 1911 2234 663287966 663287643 3.150000e-104 388.0
2 TraesCS7A01G457900 chr7A 88.608 316 28 3 1911 2218 663275180 663274865 6.830000e-101 377.0
3 TraesCS7A01G457900 chr7A 98.230 113 2 0 2501 2613 694643760 694643648 5.700000e-47 198.0
4 TraesCS7A01G457900 chr7A 95.349 43 1 1 333 375 693126218 693126259 1.680000e-07 67.6
5 TraesCS7A01G457900 chr7D 88.504 1096 58 38 771 1829 566779692 566778628 0.000000e+00 1264.0
6 TraesCS7A01G457900 chr7D 94.667 300 7 4 1 291 566780872 566780573 8.520000e-125 457.0
7 TraesCS7A01G457900 chr7D 96.667 180 6 0 368 547 566780534 566780355 1.520000e-77 300.0
8 TraesCS7A01G457900 chr7D 96.154 52 1 1 2446 2496 566778556 566778505 1.670000e-12 84.2
9 TraesCS7A01G457900 chr7D 97.368 38 1 0 333 370 125897390 125897427 6.040000e-07 65.8
10 TraesCS7A01G457900 chr7B 87.818 1100 76 26 732 1800 620604116 620605188 0.000000e+00 1236.0
11 TraesCS7A01G457900 chr7B 93.311 299 12 2 1 291 620600801 620601099 3.990000e-118 435.0
12 TraesCS7A01G457900 chr7B 90.659 182 13 2 368 548 620601138 620601316 3.360000e-59 239.0
13 TraesCS7A01G457900 chr7B 88.166 169 7 6 561 723 620603899 620604060 3.430000e-44 189.0
14 TraesCS7A01G457900 chr5A 90.000 310 25 3 1910 2213 520224532 520224841 1.880000e-106 396.0
15 TraesCS7A01G457900 chr5A 88.959 317 22 3 1910 2218 185647324 185647013 1.900000e-101 379.0
16 TraesCS7A01G457900 chr5A 88.350 309 30 4 1911 2213 606559453 606559761 1.480000e-97 366.0
17 TraesCS7A01G457900 chr5A 93.651 126 8 0 2488 2613 42693612 42693737 3.430000e-44 189.0
18 TraesCS7A01G457900 chr3A 89.308 318 24 5 1910 2218 11288537 11288221 8.770000e-105 390.0
19 TraesCS7A01G457900 chr3A 89.028 319 26 5 1908 2218 216735028 216734711 1.130000e-103 387.0
20 TraesCS7A01G457900 chr3A 95.833 120 5 0 2494 2613 611699353 611699234 7.380000e-46 195.0
21 TraesCS7A01G457900 chr6A 89.103 312 27 3 1909 2213 578692393 578692704 5.280000e-102 381.0
22 TraesCS7A01G457900 chr6A 96.094 128 5 0 2486 2613 607145195 607145068 2.640000e-50 209.0
23 TraesCS7A01G457900 chr6A 96.094 128 5 0 2486 2613 607284263 607284136 2.640000e-50 209.0
24 TraesCS7A01G457900 chr1A 88.462 312 27 5 1915 2218 97164118 97163808 4.110000e-98 368.0
25 TraesCS7A01G457900 chr1A 96.667 120 4 0 2494 2613 338308219 338308100 1.590000e-47 200.0
26 TraesCS7A01G457900 chr1A 95.122 41 2 0 333 373 48977202 48977162 6.040000e-07 65.8
27 TraesCS7A01G457900 chr4A 96.610 118 4 0 2496 2613 568323081 568322964 2.050000e-46 196.0
28 TraesCS7A01G457900 chr4A 95.833 120 5 0 2494 2613 680018514 680018395 7.380000e-46 195.0
29 TraesCS7A01G457900 chr4A 87.931 116 10 2 2263 2375 89049319 89049433 1.630000e-27 134.0
30 TraesCS7A01G457900 chr1D 91.176 136 11 1 2478 2613 224311301 224311435 1.600000e-42 183.0
31 TraesCS7A01G457900 chrUn 100.000 38 0 0 333 370 269313845 269313808 1.300000e-08 71.3
32 TraesCS7A01G457900 chr6D 100.000 38 0 0 333 370 463484329 463484366 1.300000e-08 71.3
33 TraesCS7A01G457900 chr4B 100.000 38 0 0 333 370 523281952 523281915 1.300000e-08 71.3
34 TraesCS7A01G457900 chr4B 97.368 38 1 0 333 370 249778612 249778649 6.040000e-07 65.8
35 TraesCS7A01G457900 chr5D 93.478 46 1 2 332 377 409522005 409522048 1.680000e-07 67.6
36 TraesCS7A01G457900 chr6B 97.368 38 1 0 333 370 278127856 278127893 6.040000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G457900 chr7A 652901838 652904450 2612 True 4826.00 4826 100.0000 1 2613 1 chr7A.!!$R1 2612
1 TraesCS7A01G457900 chr7D 566778505 566780872 2367 True 526.30 1264 93.9980 1 2496 4 chr7D.!!$R1 2495
2 TraesCS7A01G457900 chr7B 620600801 620605188 4387 False 524.75 1236 89.9885 1 1800 4 chr7B.!!$F1 1799

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
848 3506 0.252057 TGCCACCAGAGCTACTACCA 60.252 55.0 0.0 0.0 0.0 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2346 5059 0.031616 TTTGAAGGTGTTGGGCCCTT 60.032 50.0 25.7 7.51 43.72 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.121315 CCCTCCGATTTTCTCTTCTTTACATTT 59.879 37.037 0.00 0.00 0.00 2.32
173 178 1.554617 TGCCAGTACAGCTGCTGATAA 59.445 47.619 34.28 16.80 43.71 1.75
181 191 0.321564 AGCTGCTGATAACGGTTGCA 60.322 50.000 0.00 3.59 0.00 4.08
197 207 4.438200 CGGTTGCAACTCCCATAATGTAAC 60.438 45.833 27.64 6.13 37.57 2.50
202 212 4.436852 GCAACTCCCATAATGTAACGTGTG 60.437 45.833 0.00 0.00 0.00 3.82
230 240 5.161358 GTTTGTTGCTGCTATTAAACTCCC 58.839 41.667 14.48 0.00 0.00 4.30
259 269 6.363357 GCGTTTCGAAGAACTAAAGTACCTTA 59.637 38.462 0.00 0.00 45.90 2.69
324 345 9.614792 ATGTGAAATAGTAGAAAATGGTACTCC 57.385 33.333 0.00 0.00 31.79 3.85
325 346 8.044908 TGTGAAATAGTAGAAAATGGTACTCCC 58.955 37.037 0.00 0.00 31.79 4.30
326 347 8.265764 GTGAAATAGTAGAAAATGGTACTCCCT 58.734 37.037 0.00 0.00 31.79 4.20
327 348 8.483758 TGAAATAGTAGAAAATGGTACTCCCTC 58.516 37.037 0.00 0.00 31.79 4.30
328 349 8.625467 AAATAGTAGAAAATGGTACTCCCTCT 57.375 34.615 0.00 0.00 31.79 3.69
329 350 5.941555 AGTAGAAAATGGTACTCCCTCTG 57.058 43.478 0.00 0.00 0.00 3.35
330 351 5.342866 AGTAGAAAATGGTACTCCCTCTGT 58.657 41.667 0.00 0.00 0.00 3.41
331 352 4.828072 AGAAAATGGTACTCCCTCTGTC 57.172 45.455 0.00 0.00 0.00 3.51
332 353 4.430441 AGAAAATGGTACTCCCTCTGTCT 58.570 43.478 0.00 0.00 0.00 3.41
333 354 4.223923 AGAAAATGGTACTCCCTCTGTCTG 59.776 45.833 0.00 0.00 0.00 3.51
334 355 2.930109 ATGGTACTCCCTCTGTCTGT 57.070 50.000 0.00 0.00 0.00 3.41
335 356 2.696526 TGGTACTCCCTCTGTCTGTT 57.303 50.000 0.00 0.00 0.00 3.16
336 357 3.820195 TGGTACTCCCTCTGTCTGTTA 57.180 47.619 0.00 0.00 0.00 2.41
337 358 4.122337 TGGTACTCCCTCTGTCTGTTAA 57.878 45.455 0.00 0.00 0.00 2.01
338 359 4.485875 TGGTACTCCCTCTGTCTGTTAAA 58.514 43.478 0.00 0.00 0.00 1.52
339 360 4.903049 TGGTACTCCCTCTGTCTGTTAAAA 59.097 41.667 0.00 0.00 0.00 1.52
340 361 5.367352 TGGTACTCCCTCTGTCTGTTAAAAA 59.633 40.000 0.00 0.00 0.00 1.94
361 382 2.486951 CGTCTTACACTATGGGACGG 57.513 55.000 0.00 0.00 43.69 4.79
362 383 2.019249 CGTCTTACACTATGGGACGGA 58.981 52.381 0.00 0.00 43.69 4.69
363 384 2.033049 CGTCTTACACTATGGGACGGAG 59.967 54.545 0.00 0.00 43.69 4.63
364 385 2.361438 GTCTTACACTATGGGACGGAGG 59.639 54.545 0.00 0.00 0.00 4.30
365 386 1.687123 CTTACACTATGGGACGGAGGG 59.313 57.143 0.00 0.00 0.00 4.30
366 387 0.928505 TACACTATGGGACGGAGGGA 59.071 55.000 0.00 0.00 0.00 4.20
386 407 8.652290 GGAGGGAGTATGTTATTGTAGATCTTT 58.348 37.037 0.00 0.00 0.00 2.52
436 457 3.066203 GCTTAGCTAGCCGAGATATCTCC 59.934 52.174 23.97 12.85 44.48 3.71
449 470 5.203060 AGATATCTCCGAACCTTTGTAGC 57.797 43.478 0.00 0.00 0.00 3.58
463 485 5.821995 ACCTTTGTAGCGGTTAAACTTTGTA 59.178 36.000 0.00 0.00 0.00 2.41
548 570 1.033746 CGTAACGGAGCCAGGGAGTA 61.034 60.000 0.00 0.00 0.00 2.59
549 571 0.459078 GTAACGGAGCCAGGGAGTAC 59.541 60.000 0.00 0.00 0.00 2.73
551 573 2.363795 CGGAGCCAGGGAGTACCA 60.364 66.667 0.00 0.00 43.89 3.25
552 574 1.762460 CGGAGCCAGGGAGTACCAT 60.762 63.158 0.00 0.00 43.89 3.55
553 575 1.832912 GGAGCCAGGGAGTACCATG 59.167 63.158 0.00 0.00 46.10 3.66
555 577 2.193248 GCCAGGGAGTACCATGCC 59.807 66.667 0.00 0.00 45.30 4.40
556 578 2.505982 CCAGGGAGTACCATGCCG 59.494 66.667 0.00 0.00 45.30 5.69
557 579 2.367202 CCAGGGAGTACCATGCCGT 61.367 63.158 0.00 0.00 45.30 5.68
559 581 2.106332 GGGAGTACCATGCCGTCG 59.894 66.667 0.00 0.00 39.85 5.12
610 3205 5.105675 ACGTTCAACTACCAAAACAACCAAT 60.106 36.000 0.00 0.00 0.00 3.16
675 3276 0.890683 CCCTGGCCTTTTGCTTGTAG 59.109 55.000 3.32 0.00 40.92 2.74
676 3277 0.890683 CCTGGCCTTTTGCTTGTAGG 59.109 55.000 3.32 0.00 40.92 3.18
726 3329 7.064728 ACACTTCTTTTCAATAGCTCGTTATCC 59.935 37.037 0.00 0.00 0.00 2.59
728 3378 5.365619 TCTTTTCAATAGCTCGTTATCCCC 58.634 41.667 0.00 0.00 0.00 4.81
730 3380 4.336889 TTCAATAGCTCGTTATCCCCTG 57.663 45.455 0.00 0.00 0.00 4.45
734 3384 2.829592 CTCGTTATCCCCTGGCCC 59.170 66.667 0.00 0.00 0.00 5.80
743 3393 0.476808 TCCCCTGGCCCTTTGAAGTA 60.477 55.000 0.00 0.00 0.00 2.24
747 3397 2.162681 CCTGGCCCTTTGAAGTAACTG 58.837 52.381 0.00 0.00 0.00 3.16
748 3398 2.489073 CCTGGCCCTTTGAAGTAACTGT 60.489 50.000 0.00 0.00 0.00 3.55
771 3421 2.074729 TTTCTTTCCTTTTGCGGGGA 57.925 45.000 0.00 0.00 0.00 4.81
776 3426 1.324383 TTCCTTTTGCGGGGAAAGTC 58.676 50.000 0.00 0.00 38.49 3.01
779 3429 0.313987 CTTTTGCGGGGAAAGTCACC 59.686 55.000 0.00 0.00 36.31 4.02
844 3502 1.059913 AAACTGCCACCAGAGCTACT 58.940 50.000 0.00 0.00 41.77 2.57
845 3503 1.938585 AACTGCCACCAGAGCTACTA 58.061 50.000 0.00 0.00 41.77 1.82
846 3504 1.187087 ACTGCCACCAGAGCTACTAC 58.813 55.000 0.00 0.00 41.77 2.73
847 3505 0.461961 CTGCCACCAGAGCTACTACC 59.538 60.000 0.00 0.00 41.77 3.18
848 3506 0.252057 TGCCACCAGAGCTACTACCA 60.252 55.000 0.00 0.00 0.00 3.25
849 3507 1.123928 GCCACCAGAGCTACTACCAT 58.876 55.000 0.00 0.00 0.00 3.55
869 3527 0.454196 ACCAACAAACACCACTTCGC 59.546 50.000 0.00 0.00 0.00 4.70
907 3565 1.055849 ACCACACTGGCACACTCATA 58.944 50.000 0.00 0.00 42.67 2.15
970 3653 1.153005 CCATCCTCCTTCTGGCAGC 60.153 63.158 10.34 0.00 0.00 5.25
1006 3689 1.474478 ACACACGGTGAAAAATGCACA 59.526 42.857 16.29 0.00 37.99 4.57
1223 3922 0.970427 TGCACCGCCATCTCTCTGTA 60.970 55.000 0.00 0.00 0.00 2.74
1230 3929 2.159430 CGCCATCTCTCTGTATCTCTCG 59.841 54.545 0.00 0.00 0.00 4.04
1239 3938 3.067833 TCTGTATCTCTCGCTCATACCG 58.932 50.000 0.00 0.00 0.00 4.02
1423 4123 2.281970 TGCAACCAGAGCCTGCTG 60.282 61.111 0.00 0.00 37.00 4.41
1615 4319 4.893601 GCCCCGGCGAAGTAGCTC 62.894 72.222 9.30 0.00 37.29 4.09
1616 4320 4.570663 CCCCGGCGAAGTAGCTCG 62.571 72.222 9.30 0.00 41.84 5.03
1622 4326 4.485554 CGAAGTAGCTCGCTTGCT 57.514 55.556 8.02 5.67 46.11 3.91
1623 4327 3.624305 CGAAGTAGCTCGCTTGCTA 57.376 52.632 8.02 3.83 43.74 3.49
1624 4328 1.471964 CGAAGTAGCTCGCTTGCTAG 58.528 55.000 8.02 0.00 44.93 3.42
1650 4354 1.266718 ACTGTTGATGCGCGTTTGATT 59.733 42.857 8.43 0.00 0.00 2.57
1689 4393 1.364901 GTGGTCCGGTTGAAGTCGA 59.635 57.895 0.00 0.00 0.00 4.20
1690 4394 0.037605 GTGGTCCGGTTGAAGTCGAT 60.038 55.000 0.00 0.00 0.00 3.59
1691 4395 0.245539 TGGTCCGGTTGAAGTCGATC 59.754 55.000 0.00 0.00 0.00 3.69
1692 4396 0.801067 GGTCCGGTTGAAGTCGATCG 60.801 60.000 9.36 9.36 33.76 3.69
1771 4479 6.968263 TGAATGGATTTTTGTGTGGTTCTA 57.032 33.333 0.00 0.00 0.00 2.10
1772 4480 6.744112 TGAATGGATTTTTGTGTGGTTCTAC 58.256 36.000 0.00 0.00 0.00 2.59
1773 4481 6.549364 TGAATGGATTTTTGTGTGGTTCTACT 59.451 34.615 0.00 0.00 0.00 2.57
1829 4542 1.895131 TGTTACTACCCCTGTTCCGTC 59.105 52.381 0.00 0.00 0.00 4.79
1831 4544 1.843368 TACTACCCCTGTTCCGTCTG 58.157 55.000 0.00 0.00 0.00 3.51
1834 4547 0.472352 TACCCCTGTTCCGTCTGGTT 60.472 55.000 0.00 0.00 36.30 3.67
1836 4549 1.966451 CCCTGTTCCGTCTGGTTGC 60.966 63.158 0.00 0.00 36.30 4.17
1837 4550 1.227823 CCTGTTCCGTCTGGTTGCA 60.228 57.895 0.00 0.00 36.30 4.08
1838 4551 1.507141 CCTGTTCCGTCTGGTTGCAC 61.507 60.000 0.00 0.00 36.30 4.57
1840 4553 0.107410 TGTTCCGTCTGGTTGCACTT 60.107 50.000 0.00 0.00 36.30 3.16
1842 4555 0.534203 TTCCGTCTGGTTGCACTTCC 60.534 55.000 0.00 0.00 36.30 3.46
1844 4557 2.946762 GTCTGGTTGCACTTCCGC 59.053 61.111 0.00 0.00 0.00 5.54
1845 4558 1.598130 GTCTGGTTGCACTTCCGCT 60.598 57.895 0.00 0.00 0.00 5.52
1846 4559 1.301716 TCTGGTTGCACTTCCGCTC 60.302 57.895 0.00 0.00 0.00 5.03
1847 4560 2.281484 TGGTTGCACTTCCGCTCC 60.281 61.111 0.00 0.00 0.00 4.70
1848 4561 2.281484 GGTTGCACTTCCGCTCCA 60.281 61.111 0.00 0.00 0.00 3.86
1849 4562 1.675641 GGTTGCACTTCCGCTCCAT 60.676 57.895 0.00 0.00 0.00 3.41
1850 4563 1.244019 GGTTGCACTTCCGCTCCATT 61.244 55.000 0.00 0.00 0.00 3.16
1851 4564 0.598065 GTTGCACTTCCGCTCCATTT 59.402 50.000 0.00 0.00 0.00 2.32
1852 4565 0.881118 TTGCACTTCCGCTCCATTTC 59.119 50.000 0.00 0.00 0.00 2.17
1853 4566 0.960364 TGCACTTCCGCTCCATTTCC 60.960 55.000 0.00 0.00 0.00 3.13
1854 4567 1.982073 GCACTTCCGCTCCATTTCCG 61.982 60.000 0.00 0.00 0.00 4.30
1855 4568 0.673644 CACTTCCGCTCCATTTCCGT 60.674 55.000 0.00 0.00 0.00 4.69
1856 4569 0.391263 ACTTCCGCTCCATTTCCGTC 60.391 55.000 0.00 0.00 0.00 4.79
1857 4570 0.108138 CTTCCGCTCCATTTCCGTCT 60.108 55.000 0.00 0.00 0.00 4.18
1858 4571 0.391130 TTCCGCTCCATTTCCGTCTG 60.391 55.000 0.00 0.00 0.00 3.51
1859 4572 1.815421 CCGCTCCATTTCCGTCTGG 60.815 63.158 0.00 0.00 0.00 3.86
1860 4573 2.464459 CGCTCCATTTCCGTCTGGC 61.464 63.158 0.00 0.00 34.14 4.85
1861 4574 2.464459 GCTCCATTTCCGTCTGGCG 61.464 63.158 0.00 0.00 40.95 5.69
1878 4591 2.265182 CGGCAATTTGTGGACGGGT 61.265 57.895 0.00 0.00 0.00 5.28
1887 4600 1.956297 TGTGGACGGGTTTGTGTAAG 58.044 50.000 0.00 0.00 0.00 2.34
1893 4606 1.134340 ACGGGTTTGTGTAAGAGCACA 60.134 47.619 0.00 0.00 46.30 4.57
1901 4614 3.284323 GTGTAAGAGCACACGAAGAGA 57.716 47.619 0.00 0.00 39.47 3.10
1902 4615 3.238441 GTGTAAGAGCACACGAAGAGAG 58.762 50.000 0.00 0.00 39.47 3.20
1903 4616 3.058155 GTGTAAGAGCACACGAAGAGAGA 60.058 47.826 0.00 0.00 39.47 3.10
1904 4617 3.759086 TGTAAGAGCACACGAAGAGAGAT 59.241 43.478 0.00 0.00 0.00 2.75
1905 4618 2.937469 AGAGCACACGAAGAGAGATG 57.063 50.000 0.00 0.00 0.00 2.90
1906 4619 1.476085 AGAGCACACGAAGAGAGATGG 59.524 52.381 0.00 0.00 0.00 3.51
1907 4620 0.534412 AGCACACGAAGAGAGATGGG 59.466 55.000 0.00 0.00 0.00 4.00
1908 4621 0.532573 GCACACGAAGAGAGATGGGA 59.467 55.000 0.00 0.00 0.00 4.37
1909 4622 1.470632 GCACACGAAGAGAGATGGGAG 60.471 57.143 0.00 0.00 0.00 4.30
1910 4623 1.821753 CACACGAAGAGAGATGGGAGT 59.178 52.381 0.00 0.00 0.00 3.85
1911 4624 3.017442 CACACGAAGAGAGATGGGAGTA 58.983 50.000 0.00 0.00 0.00 2.59
1912 4625 3.634448 CACACGAAGAGAGATGGGAGTAT 59.366 47.826 0.00 0.00 0.00 2.12
1913 4626 4.822350 CACACGAAGAGAGATGGGAGTATA 59.178 45.833 0.00 0.00 0.00 1.47
1914 4627 4.822896 ACACGAAGAGAGATGGGAGTATAC 59.177 45.833 0.00 0.00 0.00 1.47
1915 4628 4.216687 CACGAAGAGAGATGGGAGTATACC 59.783 50.000 0.00 0.00 0.00 2.73
1916 4629 4.105057 ACGAAGAGAGATGGGAGTATACCT 59.895 45.833 0.00 0.00 0.00 3.08
1917 4630 4.457603 CGAAGAGAGATGGGAGTATACCTG 59.542 50.000 0.00 0.00 0.00 4.00
1918 4631 4.396357 AGAGAGATGGGAGTATACCTGG 57.604 50.000 0.00 0.00 0.00 4.45
1919 4632 2.829120 GAGAGATGGGAGTATACCTGGC 59.171 54.545 0.00 0.00 0.00 4.85
1920 4633 1.903183 GAGATGGGAGTATACCTGGCC 59.097 57.143 0.00 0.00 0.00 5.36
1921 4634 1.223077 AGATGGGAGTATACCTGGCCA 59.777 52.381 4.71 4.71 0.00 5.36
1922 4635 2.157942 AGATGGGAGTATACCTGGCCAT 60.158 50.000 5.51 0.00 0.00 4.40
1923 4636 1.434188 TGGGAGTATACCTGGCCATG 58.566 55.000 5.51 6.06 0.00 3.66
1924 4637 0.693049 GGGAGTATACCTGGCCATGG 59.307 60.000 5.51 13.05 0.00 3.66
1925 4638 0.693049 GGAGTATACCTGGCCATGGG 59.307 60.000 20.97 16.10 0.00 4.00
1964 4677 4.668118 GCCCGACACGGTCCGAAA 62.668 66.667 20.51 0.00 46.80 3.46
1965 4678 2.029369 CCCGACACGGTCCGAAAA 59.971 61.111 20.51 0.00 46.80 2.29
1966 4679 1.594836 CCCGACACGGTCCGAAAAA 60.595 57.895 20.51 0.00 46.80 1.94
1967 4680 1.562575 CCCGACACGGTCCGAAAAAG 61.563 60.000 20.51 4.98 46.80 2.27
1968 4681 1.203313 CGACACGGTCCGAAAAAGC 59.797 57.895 20.51 0.00 0.00 3.51
1969 4682 1.572941 GACACGGTCCGAAAAAGCC 59.427 57.895 20.51 0.00 0.00 4.35
1970 4683 1.848932 GACACGGTCCGAAAAAGCCC 61.849 60.000 20.51 0.00 0.00 5.19
1971 4684 2.667199 ACGGTCCGAAAAAGCCCG 60.667 61.111 20.51 0.00 44.06 6.13
1972 4685 2.357760 CGGTCCGAAAAAGCCCGA 60.358 61.111 4.91 0.00 41.08 5.14
1973 4686 2.674084 CGGTCCGAAAAAGCCCGAC 61.674 63.158 4.91 0.00 41.08 4.79
1974 4687 2.330372 GGTCCGAAAAAGCCCGACC 61.330 63.158 0.00 0.00 0.00 4.79
1975 4688 2.032987 TCCGAAAAAGCCCGACCC 59.967 61.111 0.00 0.00 0.00 4.46
1976 4689 3.428282 CCGAAAAAGCCCGACCCG 61.428 66.667 0.00 0.00 0.00 5.28
1991 4704 3.966543 CCGGCCTGGTCCAACCTT 61.967 66.667 0.00 0.00 39.58 3.50
1992 4705 2.672996 CGGCCTGGTCCAACCTTG 60.673 66.667 0.00 0.00 39.58 3.61
1993 4706 2.520968 GGCCTGGTCCAACCTTGT 59.479 61.111 0.00 0.00 39.58 3.16
1994 4707 1.603739 GGCCTGGTCCAACCTTGTC 60.604 63.158 0.00 0.00 39.58 3.18
1995 4708 1.603739 GCCTGGTCCAACCTTGTCC 60.604 63.158 0.00 0.00 39.58 4.02
1996 4709 1.843421 CCTGGTCCAACCTTGTCCA 59.157 57.895 0.00 0.00 39.58 4.02
1997 4710 0.405585 CCTGGTCCAACCTTGTCCAT 59.594 55.000 0.00 0.00 39.58 3.41
1998 4711 1.538047 CTGGTCCAACCTTGTCCATG 58.462 55.000 0.00 0.00 39.58 3.66
1999 4712 0.112218 TGGTCCAACCTTGTCCATGG 59.888 55.000 4.97 4.97 39.58 3.66
2000 4713 0.611896 GGTCCAACCTTGTCCATGGG 60.612 60.000 13.02 0.00 34.73 4.00
2001 4714 1.076549 TCCAACCTTGTCCATGGGC 59.923 57.895 10.20 10.20 33.66 5.36
2002 4715 1.077265 CCAACCTTGTCCATGGGCT 59.923 57.895 19.09 0.00 0.00 5.19
2003 4716 1.252904 CCAACCTTGTCCATGGGCTG 61.253 60.000 19.09 10.31 0.00 4.85
2005 4718 2.043652 CCTTGTCCATGGGCTGGG 60.044 66.667 19.09 15.21 45.98 4.45
2009 4722 4.864334 GTCCATGGGCTGGGCTCG 62.864 72.222 9.76 0.00 46.85 5.03
2022 4735 3.905249 GCTCGGGCCTAGGTTTTG 58.095 61.111 11.31 0.00 0.00 2.44
2023 4736 1.298667 GCTCGGGCCTAGGTTTTGA 59.701 57.895 11.31 2.96 0.00 2.69
2024 4737 0.744771 GCTCGGGCCTAGGTTTTGAG 60.745 60.000 11.31 13.25 0.00 3.02
2025 4738 0.744771 CTCGGGCCTAGGTTTTGAGC 60.745 60.000 11.31 0.00 0.00 4.26
2026 4739 1.749258 CGGGCCTAGGTTTTGAGCC 60.749 63.158 11.31 2.81 43.09 4.70
2027 4740 4.338815 GGCCTAGGTTTTGAGCCC 57.661 61.111 11.31 0.00 37.66 5.19
2028 4741 1.749258 GGCCTAGGTTTTGAGCCCG 60.749 63.158 11.31 0.00 37.66 6.13
2029 4742 1.298667 GCCTAGGTTTTGAGCCCGA 59.701 57.895 11.31 0.00 0.00 5.14
2030 4743 0.322187 GCCTAGGTTTTGAGCCCGAA 60.322 55.000 11.31 0.00 0.00 4.30
2031 4744 1.739067 CCTAGGTTTTGAGCCCGAAG 58.261 55.000 0.00 0.00 0.00 3.79
2032 4745 1.087501 CTAGGTTTTGAGCCCGAAGC 58.912 55.000 0.00 0.00 44.25 3.86
2033 4746 0.322187 TAGGTTTTGAGCCCGAAGCC 60.322 55.000 0.00 0.00 45.47 4.35
2034 4747 2.636412 GGTTTTGAGCCCGAAGCCC 61.636 63.158 0.00 0.00 45.47 5.19
2035 4748 2.671619 TTTTGAGCCCGAAGCCCG 60.672 61.111 0.00 0.00 45.47 6.13
2055 4768 3.691342 CCAGGTCGAGCCCGTTGA 61.691 66.667 11.73 0.00 38.26 3.18
2056 4769 2.579201 CAGGTCGAGCCCGTTGAT 59.421 61.111 11.73 0.00 38.26 2.57
2057 4770 1.079127 CAGGTCGAGCCCGTTGATT 60.079 57.895 11.73 0.00 38.26 2.57
2058 4771 0.673644 CAGGTCGAGCCCGTTGATTT 60.674 55.000 11.73 0.00 38.26 2.17
2059 4772 0.391263 AGGTCGAGCCCGTTGATTTC 60.391 55.000 11.73 0.00 38.26 2.17
2060 4773 0.672401 GGTCGAGCCCGTTGATTTCA 60.672 55.000 2.39 0.00 37.05 2.69
2061 4774 0.442699 GTCGAGCCCGTTGATTTCAC 59.557 55.000 0.00 0.00 37.05 3.18
2062 4775 0.672401 TCGAGCCCGTTGATTTCACC 60.672 55.000 0.00 0.00 37.05 4.02
2063 4776 0.953471 CGAGCCCGTTGATTTCACCA 60.953 55.000 0.00 0.00 0.00 4.17
2064 4777 1.463674 GAGCCCGTTGATTTCACCAT 58.536 50.000 0.00 0.00 0.00 3.55
2065 4778 1.818674 GAGCCCGTTGATTTCACCATT 59.181 47.619 0.00 0.00 0.00 3.16
2066 4779 2.231235 GAGCCCGTTGATTTCACCATTT 59.769 45.455 0.00 0.00 0.00 2.32
2067 4780 3.426615 AGCCCGTTGATTTCACCATTTA 58.573 40.909 0.00 0.00 0.00 1.40
2068 4781 3.829601 AGCCCGTTGATTTCACCATTTAA 59.170 39.130 0.00 0.00 0.00 1.52
2069 4782 4.082245 AGCCCGTTGATTTCACCATTTAAG 60.082 41.667 0.00 0.00 0.00 1.85
2070 4783 4.743493 CCCGTTGATTTCACCATTTAAGG 58.257 43.478 0.00 0.00 0.00 2.69
2071 4784 4.461081 CCCGTTGATTTCACCATTTAAGGA 59.539 41.667 0.00 0.00 0.00 3.36
2072 4785 5.047660 CCCGTTGATTTCACCATTTAAGGAA 60.048 40.000 0.00 0.00 0.00 3.36
2073 4786 6.092748 CCGTTGATTTCACCATTTAAGGAAG 58.907 40.000 0.00 0.00 0.00 3.46
2074 4787 6.072175 CCGTTGATTTCACCATTTAAGGAAGA 60.072 38.462 0.00 0.00 0.00 2.87
2075 4788 7.023575 CGTTGATTTCACCATTTAAGGAAGAG 58.976 38.462 0.00 0.00 0.00 2.85
2076 4789 7.315890 GTTGATTTCACCATTTAAGGAAGAGG 58.684 38.462 0.00 0.00 0.00 3.69
2077 4790 5.418840 TGATTTCACCATTTAAGGAAGAGGC 59.581 40.000 0.00 0.00 0.00 4.70
2078 4791 3.366052 TCACCATTTAAGGAAGAGGCC 57.634 47.619 0.00 0.00 0.00 5.19
2079 4792 2.025321 TCACCATTTAAGGAAGAGGCCC 60.025 50.000 0.00 0.00 0.00 5.80
2080 4793 1.064685 ACCATTTAAGGAAGAGGCCCG 60.065 52.381 0.00 0.00 0.00 6.13
2081 4794 1.680338 CATTTAAGGAAGAGGCCCGG 58.320 55.000 0.00 0.00 0.00 5.73
2082 4795 0.106669 ATTTAAGGAAGAGGCCCGGC 60.107 55.000 0.00 0.00 0.00 6.13
2113 4826 3.884900 CCCGACGGGCTTTTAGTG 58.115 61.111 22.37 0.00 35.35 2.74
2114 4827 1.004200 CCCGACGGGCTTTTAGTGT 60.004 57.895 22.37 0.00 35.35 3.55
2115 4828 1.296056 CCCGACGGGCTTTTAGTGTG 61.296 60.000 22.37 0.00 35.35 3.82
2116 4829 0.320073 CCGACGGGCTTTTAGTGTGA 60.320 55.000 5.81 0.00 0.00 3.58
2117 4830 1.674817 CCGACGGGCTTTTAGTGTGAT 60.675 52.381 5.81 0.00 0.00 3.06
2118 4831 1.393539 CGACGGGCTTTTAGTGTGATG 59.606 52.381 0.00 0.00 0.00 3.07
2119 4832 1.737793 GACGGGCTTTTAGTGTGATGG 59.262 52.381 0.00 0.00 0.00 3.51
2120 4833 1.094785 CGGGCTTTTAGTGTGATGGG 58.905 55.000 0.00 0.00 0.00 4.00
2121 4834 0.817654 GGGCTTTTAGTGTGATGGGC 59.182 55.000 0.00 0.00 0.00 5.36
2122 4835 0.817654 GGCTTTTAGTGTGATGGGCC 59.182 55.000 0.00 0.00 0.00 5.80
2123 4836 0.451783 GCTTTTAGTGTGATGGGCCG 59.548 55.000 0.00 0.00 0.00 6.13
2124 4837 1.094785 CTTTTAGTGTGATGGGCCGG 58.905 55.000 0.00 0.00 0.00 6.13
2125 4838 0.322997 TTTTAGTGTGATGGGCCGGG 60.323 55.000 2.18 0.00 0.00 5.73
2126 4839 2.830186 TTTAGTGTGATGGGCCGGGC 62.830 60.000 22.00 22.00 0.00 6.13
2144 4857 4.968370 TCGGGCCCGATTTTTAGG 57.032 55.556 42.66 12.44 44.01 2.69
2145 4858 1.452470 TCGGGCCCGATTTTTAGGC 60.452 57.895 42.66 0.00 44.01 3.93
2148 4861 3.116463 GCCCGATTTTTAGGCCCG 58.884 61.111 0.00 0.00 41.00 6.13
2149 4862 1.452470 GCCCGATTTTTAGGCCCGA 60.452 57.895 0.00 0.00 41.00 5.14
2150 4863 1.721664 GCCCGATTTTTAGGCCCGAC 61.722 60.000 0.00 0.00 41.00 4.79
2151 4864 1.433837 CCCGATTTTTAGGCCCGACG 61.434 60.000 0.00 0.00 0.00 5.12
2152 4865 1.433837 CCGATTTTTAGGCCCGACGG 61.434 60.000 6.99 6.99 0.00 4.79
2184 4897 2.600470 GCTCGGGCCTGGGTTTTT 60.600 61.111 14.54 0.00 0.00 1.94
2201 4914 3.425162 TTTTTGTGTTGGGCTTTGGTT 57.575 38.095 0.00 0.00 0.00 3.67
2202 4915 2.393271 TTTGTGTTGGGCTTTGGTTG 57.607 45.000 0.00 0.00 0.00 3.77
2203 4916 0.539051 TTGTGTTGGGCTTTGGTTGG 59.461 50.000 0.00 0.00 0.00 3.77
2204 4917 1.227527 GTGTTGGGCTTTGGTTGGC 60.228 57.895 0.00 0.00 0.00 4.52
2230 4943 2.830370 GCCCGAAGAATGGCCAGG 60.830 66.667 13.05 6.01 41.97 4.45
2231 4944 2.677228 CCCGAAGAATGGCCAGGT 59.323 61.111 13.05 0.12 0.00 4.00
2232 4945 1.912220 CCCGAAGAATGGCCAGGTA 59.088 57.895 13.05 0.00 0.00 3.08
2233 4946 0.474184 CCCGAAGAATGGCCAGGTAT 59.526 55.000 13.05 0.00 0.00 2.73
2262 4975 1.466167 GTCACACATAAGCTGCACTGG 59.534 52.381 1.02 0.00 0.00 4.00
2263 4976 1.347378 TCACACATAAGCTGCACTGGA 59.653 47.619 1.02 0.00 0.00 3.86
2264 4977 1.736126 CACACATAAGCTGCACTGGAG 59.264 52.381 1.02 0.00 0.00 3.86
2265 4978 1.349026 ACACATAAGCTGCACTGGAGT 59.651 47.619 1.02 0.00 0.00 3.85
2266 4979 2.567169 ACACATAAGCTGCACTGGAGTA 59.433 45.455 1.02 0.00 0.00 2.59
2267 4980 3.007940 ACACATAAGCTGCACTGGAGTAA 59.992 43.478 1.02 0.00 0.00 2.24
2268 4981 4.194640 CACATAAGCTGCACTGGAGTAAT 58.805 43.478 1.02 0.00 0.00 1.89
2269 4982 4.034858 CACATAAGCTGCACTGGAGTAATG 59.965 45.833 1.02 4.02 0.00 1.90
2270 4983 1.457346 AAGCTGCACTGGAGTAATGC 58.543 50.000 1.02 0.00 39.88 3.56
2271 4984 0.617413 AGCTGCACTGGAGTAATGCT 59.383 50.000 1.02 0.00 40.13 3.79
2272 4985 1.833630 AGCTGCACTGGAGTAATGCTA 59.166 47.619 1.02 0.00 40.13 3.49
2273 4986 1.936547 GCTGCACTGGAGTAATGCTAC 59.063 52.381 0.00 0.00 40.13 3.58
2274 4987 2.677902 GCTGCACTGGAGTAATGCTACA 60.678 50.000 0.00 0.00 40.13 2.74
2275 4988 2.932614 CTGCACTGGAGTAATGCTACAC 59.067 50.000 0.00 0.00 40.13 2.90
2276 4989 2.280628 GCACTGGAGTAATGCTACACC 58.719 52.381 0.00 0.00 38.78 4.16
2277 4990 2.093447 GCACTGGAGTAATGCTACACCT 60.093 50.000 2.18 0.00 39.01 4.00
2278 4991 3.132289 GCACTGGAGTAATGCTACACCTA 59.868 47.826 2.18 0.00 39.01 3.08
2279 4992 4.683832 CACTGGAGTAATGCTACACCTAC 58.316 47.826 2.18 0.00 39.01 3.18
2280 4993 4.402793 CACTGGAGTAATGCTACACCTACT 59.597 45.833 2.18 0.00 39.01 2.57
2281 4994 5.024118 ACTGGAGTAATGCTACACCTACTT 58.976 41.667 2.18 0.00 39.01 2.24
2282 4995 6.096423 CACTGGAGTAATGCTACACCTACTTA 59.904 42.308 2.18 0.00 39.01 2.24
2283 4996 6.666546 ACTGGAGTAATGCTACACCTACTTAA 59.333 38.462 2.18 0.00 39.01 1.85
2284 4997 7.179694 ACTGGAGTAATGCTACACCTACTTAAA 59.820 37.037 2.18 0.00 39.01 1.52
2285 4998 7.325694 TGGAGTAATGCTACACCTACTTAAAC 58.674 38.462 2.18 0.00 39.01 2.01
2286 4999 7.179694 TGGAGTAATGCTACACCTACTTAAACT 59.820 37.037 2.18 0.00 39.01 2.66
2287 5000 8.039538 GGAGTAATGCTACACCTACTTAAACTT 58.960 37.037 0.00 0.00 36.23 2.66
2289 5002 9.866798 AGTAATGCTACACCTACTTAAACTTAC 57.133 33.333 0.00 0.00 0.00 2.34
2290 5003 9.643693 GTAATGCTACACCTACTTAAACTTACA 57.356 33.333 0.00 0.00 0.00 2.41
2294 5007 9.246670 TGCTACACCTACTTAAACTTACATAGA 57.753 33.333 0.00 0.00 0.00 1.98
2295 5008 9.733219 GCTACACCTACTTAAACTTACATAGAG 57.267 37.037 0.00 0.00 0.00 2.43
2316 5029 9.797473 ATAGAGTTTTTACGTAAAAGTTAACGC 57.203 29.630 27.12 23.30 42.74 4.84
2317 5030 6.840789 AGAGTTTTTACGTAAAAGTTAACGCG 59.159 34.615 27.12 3.53 42.74 6.01
2318 5031 6.474364 AGTTTTTACGTAAAAGTTAACGCGT 58.526 32.000 27.12 5.58 42.74 6.01
2319 5032 7.614026 AGTTTTTACGTAAAAGTTAACGCGTA 58.386 30.769 27.12 10.87 42.74 4.42
2320 5033 7.787480 AGTTTTTACGTAAAAGTTAACGCGTAG 59.213 33.333 27.12 0.00 42.74 3.51
2321 5034 6.978024 TTTACGTAAAAGTTAACGCGTAGA 57.022 33.333 18.10 0.00 42.74 2.59
2322 5035 4.868581 ACGTAAAAGTTAACGCGTAGAC 57.131 40.909 14.46 14.71 42.74 2.59
2323 5036 4.286910 ACGTAAAAGTTAACGCGTAGACA 58.713 39.130 14.46 0.00 42.74 3.41
2324 5037 4.917415 ACGTAAAAGTTAACGCGTAGACAT 59.083 37.500 14.46 4.31 42.74 3.06
2325 5038 5.164158 ACGTAAAAGTTAACGCGTAGACATG 60.164 40.000 14.46 6.43 42.74 3.21
2326 5039 4.657075 AAAAGTTAACGCGTAGACATGG 57.343 40.909 14.46 0.00 0.00 3.66
2327 5040 2.288961 AGTTAACGCGTAGACATGGG 57.711 50.000 14.46 0.00 0.00 4.00
2328 5041 1.820519 AGTTAACGCGTAGACATGGGA 59.179 47.619 14.46 0.00 0.00 4.37
2329 5042 2.429610 AGTTAACGCGTAGACATGGGAT 59.570 45.455 14.46 0.00 0.00 3.85
2330 5043 3.118884 AGTTAACGCGTAGACATGGGATT 60.119 43.478 14.46 0.00 0.00 3.01
2331 5044 1.651987 AACGCGTAGACATGGGATTG 58.348 50.000 14.46 0.00 0.00 2.67
2332 5045 0.821517 ACGCGTAGACATGGGATTGA 59.178 50.000 11.67 0.00 0.00 2.57
2333 5046 1.206132 ACGCGTAGACATGGGATTGAA 59.794 47.619 11.67 0.00 0.00 2.69
2334 5047 2.158957 ACGCGTAGACATGGGATTGAAT 60.159 45.455 11.67 0.00 0.00 2.57
2335 5048 2.476619 CGCGTAGACATGGGATTGAATC 59.523 50.000 0.00 0.00 0.00 2.52
2336 5049 2.476619 GCGTAGACATGGGATTGAATCG 59.523 50.000 0.00 0.00 0.00 3.34
2337 5050 3.798889 GCGTAGACATGGGATTGAATCGA 60.799 47.826 0.00 0.00 0.00 3.59
2338 5051 4.560128 CGTAGACATGGGATTGAATCGAT 58.440 43.478 0.00 0.00 0.00 3.59
2339 5052 4.386954 CGTAGACATGGGATTGAATCGATG 59.613 45.833 0.00 11.92 0.00 3.84
2340 5053 3.748083 AGACATGGGATTGAATCGATGG 58.252 45.455 15.82 3.47 0.00 3.51
2341 5054 2.816087 GACATGGGATTGAATCGATGGG 59.184 50.000 15.82 2.35 0.00 4.00
2342 5055 2.165167 CATGGGATTGAATCGATGGGG 58.835 52.381 0.00 0.00 0.00 4.96
2343 5056 1.517238 TGGGATTGAATCGATGGGGA 58.483 50.000 0.00 0.00 0.00 4.81
2344 5057 1.421268 TGGGATTGAATCGATGGGGAG 59.579 52.381 0.00 0.00 0.00 4.30
2345 5058 1.271597 GGGATTGAATCGATGGGGAGG 60.272 57.143 0.00 0.00 0.00 4.30
2346 5059 1.699634 GGATTGAATCGATGGGGAGGA 59.300 52.381 0.00 0.00 0.00 3.71
2347 5060 2.106511 GGATTGAATCGATGGGGAGGAA 59.893 50.000 0.00 0.00 0.00 3.36
2348 5061 3.406764 GATTGAATCGATGGGGAGGAAG 58.593 50.000 0.00 0.00 0.00 3.46
2349 5062 1.131638 TGAATCGATGGGGAGGAAGG 58.868 55.000 0.00 0.00 0.00 3.46
2350 5063 0.398318 GAATCGATGGGGAGGAAGGG 59.602 60.000 0.00 0.00 0.00 3.95
2351 5064 1.709994 AATCGATGGGGAGGAAGGGC 61.710 60.000 0.00 0.00 0.00 5.19
2352 5065 3.878667 CGATGGGGAGGAAGGGCC 61.879 72.222 0.00 0.00 0.00 5.80
2353 5066 3.502875 GATGGGGAGGAAGGGCCC 61.503 72.222 16.46 16.46 43.91 5.80
2354 5067 4.386100 ATGGGGAGGAAGGGCCCA 62.386 66.667 27.56 0.00 46.57 5.36
2355 5068 3.928172 ATGGGGAGGAAGGGCCCAA 62.928 63.158 27.56 0.00 46.57 4.12
2356 5069 4.062032 GGGGAGGAAGGGCCCAAC 62.062 72.222 27.56 17.30 46.57 3.77
2357 5070 3.264845 GGGAGGAAGGGCCCAACA 61.265 66.667 27.56 0.00 44.07 3.33
2358 5071 2.035783 GGAGGAAGGGCCCAACAC 59.964 66.667 27.56 11.35 37.37 3.32
2359 5072 2.035783 GAGGAAGGGCCCAACACC 59.964 66.667 27.56 20.33 37.37 4.16
2360 5073 2.452491 AGGAAGGGCCCAACACCT 60.452 61.111 27.56 22.25 39.21 4.00
2363 5076 3.352512 AAGGGCCCAACACCTTCA 58.647 55.556 27.56 0.00 43.38 3.02
2364 5077 1.623625 AAGGGCCCAACACCTTCAA 59.376 52.632 27.56 0.00 43.38 2.69
2365 5078 0.031616 AAGGGCCCAACACCTTCAAA 60.032 50.000 27.56 0.00 43.38 2.69
2366 5079 0.031616 AGGGCCCAACACCTTCAAAA 60.032 50.000 27.56 0.00 31.68 2.44
2367 5080 1.055849 GGGCCCAACACCTTCAAAAT 58.944 50.000 19.95 0.00 0.00 1.82
2368 5081 1.001974 GGGCCCAACACCTTCAAAATC 59.998 52.381 19.95 0.00 0.00 2.17
2369 5082 1.691434 GGCCCAACACCTTCAAAATCA 59.309 47.619 0.00 0.00 0.00 2.57
2370 5083 2.103941 GGCCCAACACCTTCAAAATCAA 59.896 45.455 0.00 0.00 0.00 2.57
2371 5084 3.392882 GCCCAACACCTTCAAAATCAAG 58.607 45.455 0.00 0.00 0.00 3.02
2372 5085 3.803368 GCCCAACACCTTCAAAATCAAGG 60.803 47.826 0.00 0.00 45.41 3.61
2373 5086 3.244181 CCCAACACCTTCAAAATCAAGGG 60.244 47.826 3.59 0.00 44.36 3.95
2400 5113 5.446260 GGGGGAGAGTATTGGTTAGAAAA 57.554 43.478 0.00 0.00 0.00 2.29
2401 5114 5.437946 GGGGGAGAGTATTGGTTAGAAAAG 58.562 45.833 0.00 0.00 0.00 2.27
2402 5115 5.045066 GGGGGAGAGTATTGGTTAGAAAAGT 60.045 44.000 0.00 0.00 0.00 2.66
2403 5116 6.482524 GGGGAGAGTATTGGTTAGAAAAGTT 58.517 40.000 0.00 0.00 0.00 2.66
2404 5117 7.311486 GGGGGAGAGTATTGGTTAGAAAAGTTA 60.311 40.741 0.00 0.00 0.00 2.24
2405 5118 7.551974 GGGGAGAGTATTGGTTAGAAAAGTTAC 59.448 40.741 0.00 0.00 0.00 2.50
2406 5119 7.277319 GGGAGAGTATTGGTTAGAAAAGTTACG 59.723 40.741 0.00 0.00 0.00 3.18
2407 5120 7.816513 GGAGAGTATTGGTTAGAAAAGTTACGT 59.183 37.037 0.00 0.00 0.00 3.57
2408 5121 9.846248 GAGAGTATTGGTTAGAAAAGTTACGTA 57.154 33.333 0.00 0.00 0.00 3.57
2447 5160 9.929180 TTGTATGTAGATGTAGGATTATTGAGC 57.071 33.333 0.00 0.00 0.00 4.26
2448 5161 9.314133 TGTATGTAGATGTAGGATTATTGAGCT 57.686 33.333 0.00 0.00 0.00 4.09
2449 5162 9.579768 GTATGTAGATGTAGGATTATTGAGCTG 57.420 37.037 0.00 0.00 0.00 4.24
2450 5163 6.459066 TGTAGATGTAGGATTATTGAGCTGC 58.541 40.000 0.00 0.00 0.00 5.25
2451 5164 5.557576 AGATGTAGGATTATTGAGCTGCA 57.442 39.130 1.02 0.00 0.00 4.41
2452 5165 5.303971 AGATGTAGGATTATTGAGCTGCAC 58.696 41.667 1.02 0.00 0.00 4.57
2453 5166 4.760530 TGTAGGATTATTGAGCTGCACT 57.239 40.909 1.02 0.00 0.00 4.40
2454 5167 4.445453 TGTAGGATTATTGAGCTGCACTG 58.555 43.478 1.02 0.00 0.00 3.66
2474 5187 1.002274 ATCGTGCCTCCTCTCCCTT 59.998 57.895 0.00 0.00 0.00 3.95
2490 5203 4.041198 TCTCCCTTCGGTTGTGTTTCTAAT 59.959 41.667 0.00 0.00 0.00 1.73
2492 5205 4.758165 TCCCTTCGGTTGTGTTTCTAATTC 59.242 41.667 0.00 0.00 0.00 2.17
2493 5206 4.760204 CCCTTCGGTTGTGTTTCTAATTCT 59.240 41.667 0.00 0.00 0.00 2.40
2494 5207 5.935789 CCCTTCGGTTGTGTTTCTAATTCTA 59.064 40.000 0.00 0.00 0.00 2.10
2496 5209 7.295930 CCTTCGGTTGTGTTTCTAATTCTAAC 58.704 38.462 0.00 0.00 0.00 2.34
2497 5210 7.172703 CCTTCGGTTGTGTTTCTAATTCTAACT 59.827 37.037 0.00 0.00 0.00 2.24
2498 5211 9.199982 CTTCGGTTGTGTTTCTAATTCTAACTA 57.800 33.333 0.00 0.00 0.00 2.24
2499 5212 9.545105 TTCGGTTGTGTTTCTAATTCTAACTAA 57.455 29.630 0.00 0.00 0.00 2.24
2500 5213 9.545105 TCGGTTGTGTTTCTAATTCTAACTAAA 57.455 29.630 0.00 0.00 0.00 1.85
2514 5227 6.223138 TCTAACTAAAAGAACACATGTGCG 57.777 37.500 25.68 3.43 0.00 5.34
2515 5228 4.893424 AACTAAAAGAACACATGTGCGT 57.107 36.364 25.68 13.99 0.00 5.24
2516 5229 4.893424 ACTAAAAGAACACATGTGCGTT 57.107 36.364 25.68 13.45 0.00 4.84
2517 5230 4.597079 ACTAAAAGAACACATGTGCGTTG 58.403 39.130 25.68 10.07 0.00 4.10
2518 5231 1.838913 AAAGAACACATGTGCGTTGC 58.161 45.000 25.68 5.23 0.00 4.17
2519 5232 0.737804 AAGAACACATGTGCGTTGCA 59.262 45.000 25.68 0.00 35.60 4.08
2520 5233 0.737804 AGAACACATGTGCGTTGCAA 59.262 45.000 25.68 0.00 41.47 4.08
2521 5234 0.845768 GAACACATGTGCGTTGCAAC 59.154 50.000 25.68 19.89 41.47 4.17
2531 5244 3.302344 GTTGCAACGGGGCCACAT 61.302 61.111 14.90 0.00 30.39 3.21
2532 5245 2.522923 TTGCAACGGGGCCACATT 60.523 55.556 5.46 0.00 0.00 2.71
2533 5246 1.228583 TTGCAACGGGGCCACATTA 60.229 52.632 5.46 0.00 0.00 1.90
2534 5247 0.827925 TTGCAACGGGGCCACATTAA 60.828 50.000 5.46 0.00 0.00 1.40
2535 5248 1.214325 GCAACGGGGCCACATTAAC 59.786 57.895 5.46 0.00 0.00 2.01
2536 5249 1.248101 GCAACGGGGCCACATTAACT 61.248 55.000 5.46 0.00 0.00 2.24
2537 5250 1.253100 CAACGGGGCCACATTAACTT 58.747 50.000 5.46 0.00 0.00 2.66
2538 5251 2.438411 CAACGGGGCCACATTAACTTA 58.562 47.619 5.46 0.00 0.00 2.24
2539 5252 2.820787 CAACGGGGCCACATTAACTTAA 59.179 45.455 5.46 0.00 0.00 1.85
2540 5253 3.157750 ACGGGGCCACATTAACTTAAA 57.842 42.857 5.46 0.00 0.00 1.52
2541 5254 3.086282 ACGGGGCCACATTAACTTAAAG 58.914 45.455 5.46 0.00 0.00 1.85
2542 5255 3.244981 ACGGGGCCACATTAACTTAAAGA 60.245 43.478 5.46 0.00 0.00 2.52
2543 5256 3.377172 CGGGGCCACATTAACTTAAAGAG 59.623 47.826 5.46 0.00 0.00 2.85
2544 5257 4.341487 GGGGCCACATTAACTTAAAGAGT 58.659 43.478 4.39 0.00 41.47 3.24
2546 5259 5.105877 GGGGCCACATTAACTTAAAGAGTTC 60.106 44.000 4.39 0.00 45.40 3.01
2547 5260 5.475564 GGGCCACATTAACTTAAAGAGTTCA 59.524 40.000 4.39 0.00 45.40 3.18
2548 5261 6.015772 GGGCCACATTAACTTAAAGAGTTCAA 60.016 38.462 4.39 0.00 45.40 2.69
2549 5262 7.309805 GGGCCACATTAACTTAAAGAGTTCAAT 60.310 37.037 4.39 0.00 45.40 2.57
2550 5263 8.736244 GGCCACATTAACTTAAAGAGTTCAATA 58.264 33.333 0.00 0.00 45.40 1.90
2583 5296 8.607441 TCTCATACATATCAAGTTACATTGGC 57.393 34.615 0.00 0.00 0.00 4.52
2584 5297 7.384932 TCTCATACATATCAAGTTACATTGGCG 59.615 37.037 0.00 0.00 0.00 5.69
2585 5298 7.213678 TCATACATATCAAGTTACATTGGCGA 58.786 34.615 0.00 0.00 0.00 5.54
2586 5299 5.734855 ACATATCAAGTTACATTGGCGAC 57.265 39.130 0.00 0.00 0.00 5.19
2587 5300 4.574828 ACATATCAAGTTACATTGGCGACC 59.425 41.667 0.00 0.00 0.00 4.79
2588 5301 2.851263 TCAAGTTACATTGGCGACCT 57.149 45.000 0.00 0.00 0.00 3.85
2589 5302 3.134574 TCAAGTTACATTGGCGACCTT 57.865 42.857 0.00 0.00 0.00 3.50
2590 5303 3.482436 TCAAGTTACATTGGCGACCTTT 58.518 40.909 0.00 0.00 0.00 3.11
2591 5304 3.886505 TCAAGTTACATTGGCGACCTTTT 59.113 39.130 0.00 0.00 0.00 2.27
2592 5305 4.339814 TCAAGTTACATTGGCGACCTTTTT 59.660 37.500 0.00 0.00 0.00 1.94
2612 5325 6.968263 TTTTTACCATCAAATCCTCACACA 57.032 33.333 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
173 178 2.091541 CATTATGGGAGTTGCAACCGT 58.908 47.619 25.62 14.51 0.00 4.83
181 191 3.687698 GCACACGTTACATTATGGGAGTT 59.312 43.478 0.00 0.00 0.00 3.01
197 207 1.255859 CAGCAACAAACAATGCACACG 59.744 47.619 0.00 0.00 44.95 4.49
202 212 6.146021 AGTTTAATAGCAGCAACAAACAATGC 59.854 34.615 11.94 0.00 42.87 3.56
230 240 5.440685 ACTTTAGTTCTTCGAAACGCATTG 58.559 37.500 0.00 0.00 34.27 2.82
259 269 9.732130 AGCTTCTATCTTTCTTCAAATAAGTGT 57.268 29.630 0.00 0.00 0.00 3.55
316 337 2.696526 AACAGACAGAGGGAGTACCA 57.303 50.000 0.00 0.00 43.89 3.25
337 358 4.687483 CGTCCCATAGTGTAAGACGTTTTT 59.313 41.667 0.00 0.00 43.89 1.94
338 359 4.240096 CGTCCCATAGTGTAAGACGTTTT 58.760 43.478 0.00 0.00 43.89 2.43
339 360 3.367703 CCGTCCCATAGTGTAAGACGTTT 60.368 47.826 9.63 0.00 46.62 3.60
340 361 2.165030 CCGTCCCATAGTGTAAGACGTT 59.835 50.000 9.63 0.00 46.62 3.99
341 362 1.747355 CCGTCCCATAGTGTAAGACGT 59.253 52.381 9.63 0.00 46.62 4.34
343 364 2.361438 CCTCCGTCCCATAGTGTAAGAC 59.639 54.545 0.00 0.00 0.00 3.01
344 365 2.662866 CCTCCGTCCCATAGTGTAAGA 58.337 52.381 0.00 0.00 0.00 2.10
345 366 1.687123 CCCTCCGTCCCATAGTGTAAG 59.313 57.143 0.00 0.00 0.00 2.34
346 367 1.288633 TCCCTCCGTCCCATAGTGTAA 59.711 52.381 0.00 0.00 0.00 2.41
347 368 0.928505 TCCCTCCGTCCCATAGTGTA 59.071 55.000 0.00 0.00 0.00 2.90
348 369 0.397254 CTCCCTCCGTCCCATAGTGT 60.397 60.000 0.00 0.00 0.00 3.55
349 370 0.397254 ACTCCCTCCGTCCCATAGTG 60.397 60.000 0.00 0.00 0.00 2.74
350 371 1.229131 TACTCCCTCCGTCCCATAGT 58.771 55.000 0.00 0.00 0.00 2.12
351 372 2.171840 CATACTCCCTCCGTCCCATAG 58.828 57.143 0.00 0.00 0.00 2.23
352 373 1.502039 ACATACTCCCTCCGTCCCATA 59.498 52.381 0.00 0.00 0.00 2.74
353 374 0.264955 ACATACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
354 375 0.042131 AACATACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
355 376 2.077687 TAACATACTCCCTCCGTCCC 57.922 55.000 0.00 0.00 0.00 4.46
356 377 3.387050 ACAATAACATACTCCCTCCGTCC 59.613 47.826 0.00 0.00 0.00 4.79
357 378 4.667519 ACAATAACATACTCCCTCCGTC 57.332 45.455 0.00 0.00 0.00 4.79
358 379 5.452255 TCTACAATAACATACTCCCTCCGT 58.548 41.667 0.00 0.00 0.00 4.69
359 380 6.434652 AGATCTACAATAACATACTCCCTCCG 59.565 42.308 0.00 0.00 0.00 4.63
360 381 7.784470 AGATCTACAATAACATACTCCCTCC 57.216 40.000 0.00 0.00 0.00 4.30
386 407 4.382291 ACCGTCCTTGCGCATATTTAATA 58.618 39.130 12.75 0.00 0.00 0.98
436 457 3.495753 AGTTTAACCGCTACAAAGGTTCG 59.504 43.478 2.90 0.00 46.87 3.95
449 470 4.818005 AGGTCCAAGTACAAAGTTTAACCG 59.182 41.667 0.00 0.00 30.34 4.44
463 485 1.423921 CCTTTGTGGGTAGGTCCAAGT 59.576 52.381 0.00 0.00 38.72 3.16
529 551 1.033746 TACTCCCTGGCTCCGTTACG 61.034 60.000 0.00 0.00 0.00 3.18
556 578 1.990563 CATGGTTGGTTCGTACTCGAC 59.009 52.381 0.00 0.00 46.03 4.20
557 579 1.670674 GCATGGTTGGTTCGTACTCGA 60.671 52.381 0.00 0.00 44.66 4.04
559 581 1.084289 GGCATGGTTGGTTCGTACTC 58.916 55.000 0.00 0.00 0.00 2.59
591 3186 4.036971 TCGGATTGGTTGTTTTGGTAGTTG 59.963 41.667 0.00 0.00 0.00 3.16
675 3276 0.107508 TCTGATTGCCTGCTACAGCC 60.108 55.000 0.00 0.00 41.18 4.85
676 3277 1.669779 CTTCTGATTGCCTGCTACAGC 59.330 52.381 0.00 0.00 42.50 4.40
677 3278 3.257469 TCTTCTGATTGCCTGCTACAG 57.743 47.619 0.00 0.00 0.00 2.74
678 3279 3.261643 TCTTCTTCTGATTGCCTGCTACA 59.738 43.478 0.00 0.00 0.00 2.74
679 3280 3.620821 GTCTTCTTCTGATTGCCTGCTAC 59.379 47.826 0.00 0.00 0.00 3.58
707 3310 5.123227 CAGGGGATAACGAGCTATTGAAAA 58.877 41.667 0.00 0.00 0.00 2.29
716 3319 2.111251 GGCCAGGGGATAACGAGC 59.889 66.667 0.00 0.00 0.00 5.03
717 3320 1.345715 AAGGGCCAGGGGATAACGAG 61.346 60.000 6.18 0.00 0.00 4.18
726 3329 1.075536 AGTTACTTCAAAGGGCCAGGG 59.924 52.381 6.18 0.00 0.00 4.45
728 3378 2.863809 ACAGTTACTTCAAAGGGCCAG 58.136 47.619 6.18 0.00 0.00 4.85
730 3380 4.665833 AAAACAGTTACTTCAAAGGGCC 57.334 40.909 0.00 0.00 0.00 5.80
754 3404 2.074729 TTTCCCCGCAAAAGGAAAGA 57.925 45.000 0.15 0.00 45.09 2.52
767 3417 0.949397 GTTCAACGGTGACTTTCCCC 59.051 55.000 0.44 0.00 31.90 4.81
768 3418 1.332686 GTGTTCAACGGTGACTTTCCC 59.667 52.381 0.44 0.00 31.90 3.97
771 3421 5.413523 AGTTTAAGTGTTCAACGGTGACTTT 59.586 36.000 0.44 0.00 31.90 2.66
776 3426 5.504392 GGTTAGTTTAAGTGTTCAACGGTG 58.496 41.667 0.00 0.00 0.00 4.94
779 3429 5.738118 TGGGTTAGTTTAAGTGTTCAACG 57.262 39.130 0.00 0.00 0.00 4.10
844 3502 4.440826 AGTGGTGTTTGTTGGTATGGTA 57.559 40.909 0.00 0.00 0.00 3.25
845 3503 3.306472 AGTGGTGTTTGTTGGTATGGT 57.694 42.857 0.00 0.00 0.00 3.55
846 3504 3.304391 CGAAGTGGTGTTTGTTGGTATGG 60.304 47.826 0.00 0.00 0.00 2.74
847 3505 3.851838 GCGAAGTGGTGTTTGTTGGTATG 60.852 47.826 0.00 0.00 0.00 2.39
848 3506 2.292292 GCGAAGTGGTGTTTGTTGGTAT 59.708 45.455 0.00 0.00 0.00 2.73
849 3507 1.671845 GCGAAGTGGTGTTTGTTGGTA 59.328 47.619 0.00 0.00 0.00 3.25
869 3527 1.681264 GTGGTGGTTTTGGAGGTTCAG 59.319 52.381 0.00 0.00 0.00 3.02
968 3651 1.111277 GTTTATGATTTGGCCGGGCT 58.889 50.000 29.87 9.12 0.00 5.19
970 3653 1.821753 TGTGTTTATGATTTGGCCGGG 59.178 47.619 2.18 0.00 0.00 5.73
1022 3705 3.536164 CGAGCAGCAGGAGGAGAT 58.464 61.111 0.00 0.00 0.00 2.75
1106 3789 3.865929 CTGCACTTCTGGTCGCCGT 62.866 63.158 0.00 0.00 0.00 5.68
1223 3922 1.529226 CTCCGGTATGAGCGAGAGAT 58.471 55.000 0.00 0.00 42.41 2.75
1239 3938 0.177141 TACAAGCATGCGTACCCTCC 59.823 55.000 13.01 0.00 0.00 4.30
1250 3949 0.543749 GGAGCCTCTGGTACAAGCAT 59.456 55.000 0.00 0.00 38.70 3.79
1373 4073 4.736896 GTCGTCGGTGGCCTGGAC 62.737 72.222 3.32 7.82 0.00 4.02
1379 4079 1.870055 TTGAGGTAGTCGTCGGTGGC 61.870 60.000 0.00 0.00 0.00 5.01
1650 4354 1.609501 CTCCTCCACGGACCTCCAA 60.610 63.158 0.00 0.00 36.69 3.53
1689 4393 2.257409 CTGGTTGCTAGGCCACCGAT 62.257 60.000 5.01 0.00 45.76 4.18
1690 4394 2.925706 TGGTTGCTAGGCCACCGA 60.926 61.111 5.01 0.00 45.76 4.69
1691 4395 1.895020 TACTGGTTGCTAGGCCACCG 61.895 60.000 5.01 2.58 45.76 4.94
1692 4396 0.326927 TTACTGGTTGCTAGGCCACC 59.673 55.000 5.01 3.33 43.52 4.61
1810 4519 2.094338 CAGACGGAACAGGGGTAGTAAC 60.094 54.545 0.00 0.00 0.00 2.50
1829 4542 2.328099 GGAGCGGAAGTGCAACCAG 61.328 63.158 0.00 0.00 37.80 4.00
1831 4544 1.244019 AATGGAGCGGAAGTGCAACC 61.244 55.000 0.00 0.00 37.80 3.77
1834 4547 0.960364 GGAAATGGAGCGGAAGTGCA 60.960 55.000 0.00 0.00 37.31 4.57
1836 4549 0.673644 ACGGAAATGGAGCGGAAGTG 60.674 55.000 0.00 0.00 0.00 3.16
1837 4550 0.391263 GACGGAAATGGAGCGGAAGT 60.391 55.000 0.00 0.00 0.00 3.01
1838 4551 0.108138 AGACGGAAATGGAGCGGAAG 60.108 55.000 0.00 0.00 0.00 3.46
1840 4553 1.218047 CAGACGGAAATGGAGCGGA 59.782 57.895 0.00 0.00 0.00 5.54
1842 4555 2.464459 GCCAGACGGAAATGGAGCG 61.464 63.158 0.00 0.00 39.02 5.03
1844 4557 3.799753 CGCCAGACGGAAATGGAG 58.200 61.111 0.00 0.00 39.02 3.86
1853 4566 1.442520 CACAAATTGCCGCCAGACG 60.443 57.895 0.00 0.00 43.15 4.18
1854 4567 1.080569 CCACAAATTGCCGCCAGAC 60.081 57.895 0.00 0.00 0.00 3.51
1855 4568 1.228398 TCCACAAATTGCCGCCAGA 60.228 52.632 0.00 0.00 0.00 3.86
1856 4569 1.080569 GTCCACAAATTGCCGCCAG 60.081 57.895 0.00 0.00 0.00 4.85
1857 4570 2.913765 CGTCCACAAATTGCCGCCA 61.914 57.895 0.00 0.00 0.00 5.69
1858 4571 2.126502 CGTCCACAAATTGCCGCC 60.127 61.111 0.00 0.00 0.00 6.13
1859 4572 2.126502 CCGTCCACAAATTGCCGC 60.127 61.111 0.00 0.00 0.00 6.53
1860 4573 1.801309 AACCCGTCCACAAATTGCCG 61.801 55.000 0.00 0.00 0.00 5.69
1861 4574 0.391228 AAACCCGTCCACAAATTGCC 59.609 50.000 0.00 0.00 0.00 4.52
1862 4575 1.202475 ACAAACCCGTCCACAAATTGC 60.202 47.619 0.00 0.00 0.00 3.56
1863 4576 2.159170 ACACAAACCCGTCCACAAATTG 60.159 45.455 0.00 0.00 0.00 2.32
1867 4580 2.093075 TCTTACACAAACCCGTCCACAA 60.093 45.455 0.00 0.00 0.00 3.33
1887 4600 1.470632 CCCATCTCTCTTCGTGTGCTC 60.471 57.143 0.00 0.00 0.00 4.26
1893 4606 4.105057 AGGTATACTCCCATCTCTCTTCGT 59.895 45.833 2.25 0.00 0.00 3.85
1901 4614 1.223077 TGGCCAGGTATACTCCCATCT 59.777 52.381 0.00 0.00 0.00 2.90
1902 4615 1.729586 TGGCCAGGTATACTCCCATC 58.270 55.000 0.00 0.00 0.00 3.51
1903 4616 1.988107 CATGGCCAGGTATACTCCCAT 59.012 52.381 13.05 7.00 38.32 4.00
1904 4617 1.434188 CATGGCCAGGTATACTCCCA 58.566 55.000 13.05 5.04 33.54 4.37
1905 4618 0.693049 CCATGGCCAGGTATACTCCC 59.307 60.000 17.55 0.00 0.00 4.30
1906 4619 0.693049 CCCATGGCCAGGTATACTCC 59.307 60.000 17.55 0.60 0.00 3.85
1907 4620 0.036875 GCCCATGGCCAGGTATACTC 59.963 60.000 17.55 0.00 44.06 2.59
1908 4621 2.155065 GCCCATGGCCAGGTATACT 58.845 57.895 17.55 0.00 44.06 2.12
1909 4622 4.821935 GCCCATGGCCAGGTATAC 57.178 61.111 17.55 0.00 44.06 1.47
1950 4663 1.203313 GCTTTTTCGGACCGTGTCG 59.797 57.895 14.79 1.41 32.65 4.35
1951 4664 1.572941 GGCTTTTTCGGACCGTGTC 59.427 57.895 14.79 0.00 0.00 3.67
1952 4665 1.895231 GGGCTTTTTCGGACCGTGT 60.895 57.895 14.79 0.00 0.00 4.49
1953 4666 2.951458 GGGCTTTTTCGGACCGTG 59.049 61.111 14.79 1.86 0.00 4.94
1956 4669 2.330372 GGTCGGGCTTTTTCGGACC 61.330 63.158 0.00 0.00 43.75 4.46
1957 4670 2.330372 GGGTCGGGCTTTTTCGGAC 61.330 63.158 0.00 0.00 34.88 4.79
1958 4671 2.032987 GGGTCGGGCTTTTTCGGA 59.967 61.111 0.00 0.00 0.00 4.55
1959 4672 3.428282 CGGGTCGGGCTTTTTCGG 61.428 66.667 0.00 0.00 0.00 4.30
1960 4673 3.428282 CCGGGTCGGGCTTTTTCG 61.428 66.667 0.00 0.00 44.15 3.46
1974 4687 3.966543 AAGGTTGGACCAGGCCGG 61.967 66.667 11.48 11.48 41.95 6.13
1975 4688 2.672996 CAAGGTTGGACCAGGCCG 60.673 66.667 0.00 0.00 41.95 6.13
1976 4689 1.603739 GACAAGGTTGGACCAGGCC 60.604 63.158 0.00 0.00 41.95 5.19
1977 4690 1.603739 GGACAAGGTTGGACCAGGC 60.604 63.158 0.00 0.00 41.95 4.85
1978 4691 0.405585 ATGGACAAGGTTGGACCAGG 59.594 55.000 13.49 0.00 41.95 4.45
1979 4692 1.538047 CATGGACAAGGTTGGACCAG 58.462 55.000 13.49 0.00 41.95 4.00
1980 4693 0.112218 CCATGGACAAGGTTGGACCA 59.888 55.000 5.56 11.41 41.95 4.02
1981 4694 0.611896 CCCATGGACAAGGTTGGACC 60.612 60.000 15.22 0.00 38.99 4.46
1982 4695 1.250840 GCCCATGGACAAGGTTGGAC 61.251 60.000 15.22 0.00 0.00 4.02
1983 4696 1.076549 GCCCATGGACAAGGTTGGA 59.923 57.895 15.22 0.00 0.00 3.53
1984 4697 1.077265 AGCCCATGGACAAGGTTGG 59.923 57.895 15.22 0.00 0.00 3.77
1985 4698 2.269978 CAGCCCATGGACAAGGTTG 58.730 57.895 15.22 0.00 0.00 3.77
1986 4699 4.850193 CAGCCCATGGACAAGGTT 57.150 55.556 15.22 0.00 0.00 3.50
2005 4718 0.744771 CTCAAAACCTAGGCCCGAGC 60.745 60.000 9.30 0.00 38.76 5.03
2006 4719 0.744771 GCTCAAAACCTAGGCCCGAG 60.745 60.000 9.30 10.89 0.00 4.63
2007 4720 1.298667 GCTCAAAACCTAGGCCCGA 59.701 57.895 9.30 0.00 0.00 5.14
2008 4721 1.749258 GGCTCAAAACCTAGGCCCG 60.749 63.158 9.30 0.00 37.12 6.13
2009 4722 4.338815 GGCTCAAAACCTAGGCCC 57.661 61.111 9.30 0.00 37.12 5.80
2011 4724 0.322187 TTCGGGCTCAAAACCTAGGC 60.322 55.000 9.30 0.00 37.55 3.93
2012 4725 1.739067 CTTCGGGCTCAAAACCTAGG 58.261 55.000 7.41 7.41 0.00 3.02
2013 4726 1.087501 GCTTCGGGCTCAAAACCTAG 58.912 55.000 0.00 0.00 38.06 3.02
2014 4727 0.322187 GGCTTCGGGCTCAAAACCTA 60.322 55.000 1.83 0.00 41.46 3.08
2015 4728 1.603739 GGCTTCGGGCTCAAAACCT 60.604 57.895 1.83 0.00 41.46 3.50
2016 4729 2.636412 GGGCTTCGGGCTCAAAACC 61.636 63.158 1.83 0.00 42.01 3.27
2017 4730 2.962569 GGGCTTCGGGCTCAAAAC 59.037 61.111 1.83 0.00 42.01 2.43
2018 4731 2.671619 CGGGCTTCGGGCTCAAAA 60.672 61.111 2.50 0.00 42.70 2.44
2040 4753 0.391263 GAAATCAACGGGCTCGACCT 60.391 55.000 15.95 0.00 40.11 3.85
2041 4754 0.672401 TGAAATCAACGGGCTCGACC 60.672 55.000 15.95 0.00 40.11 4.79
2042 4755 0.442699 GTGAAATCAACGGGCTCGAC 59.557 55.000 15.95 0.00 40.11 4.20
2043 4756 0.672401 GGTGAAATCAACGGGCTCGA 60.672 55.000 15.95 0.00 40.11 4.04
2044 4757 0.953471 TGGTGAAATCAACGGGCTCG 60.953 55.000 3.27 3.27 36.03 5.03
2045 4758 1.463674 ATGGTGAAATCAACGGGCTC 58.536 50.000 0.00 0.00 36.03 4.70
2046 4759 1.923356 AATGGTGAAATCAACGGGCT 58.077 45.000 0.00 0.00 36.03 5.19
2047 4760 2.741759 AAATGGTGAAATCAACGGGC 57.258 45.000 0.00 0.00 36.03 6.13
2048 4761 4.461081 TCCTTAAATGGTGAAATCAACGGG 59.539 41.667 0.00 0.00 36.03 5.28
2049 4762 5.637006 TCCTTAAATGGTGAAATCAACGG 57.363 39.130 0.00 0.00 36.03 4.44
2050 4763 6.908825 TCTTCCTTAAATGGTGAAATCAACG 58.091 36.000 0.00 0.00 36.03 4.10
2051 4764 7.315890 CCTCTTCCTTAAATGGTGAAATCAAC 58.684 38.462 0.00 0.00 0.00 3.18
2052 4765 6.071391 GCCTCTTCCTTAAATGGTGAAATCAA 60.071 38.462 0.00 0.00 0.00 2.57
2053 4766 5.418840 GCCTCTTCCTTAAATGGTGAAATCA 59.581 40.000 0.00 0.00 0.00 2.57
2054 4767 5.163509 GGCCTCTTCCTTAAATGGTGAAATC 60.164 44.000 0.00 0.00 0.00 2.17
2055 4768 4.711846 GGCCTCTTCCTTAAATGGTGAAAT 59.288 41.667 0.00 0.00 0.00 2.17
2056 4769 4.086457 GGCCTCTTCCTTAAATGGTGAAA 58.914 43.478 0.00 0.00 0.00 2.69
2057 4770 3.563479 GGGCCTCTTCCTTAAATGGTGAA 60.563 47.826 0.84 0.00 0.00 3.18
2058 4771 2.025321 GGGCCTCTTCCTTAAATGGTGA 60.025 50.000 0.84 0.00 0.00 4.02
2059 4772 2.379005 GGGCCTCTTCCTTAAATGGTG 58.621 52.381 0.84 0.00 0.00 4.17
2060 4773 1.064685 CGGGCCTCTTCCTTAAATGGT 60.065 52.381 0.84 0.00 0.00 3.55
2061 4774 1.680338 CGGGCCTCTTCCTTAAATGG 58.320 55.000 0.84 0.00 0.00 3.16
2062 4775 1.680338 CCGGGCCTCTTCCTTAAATG 58.320 55.000 0.84 0.00 0.00 2.32
2063 4776 0.106669 GCCGGGCCTCTTCCTTAAAT 60.107 55.000 8.12 0.00 0.00 1.40
2064 4777 1.301954 GCCGGGCCTCTTCCTTAAA 59.698 57.895 8.12 0.00 0.00 1.52
2065 4778 2.676265 GGCCGGGCCTCTTCCTTAA 61.676 63.158 30.86 0.00 46.69 1.85
2066 4779 3.087906 GGCCGGGCCTCTTCCTTA 61.088 66.667 30.86 0.00 46.69 2.69
2097 4810 0.320073 TCACACTAAAAGCCCGTCGG 60.320 55.000 3.60 3.60 0.00 4.79
2098 4811 1.393539 CATCACACTAAAAGCCCGTCG 59.606 52.381 0.00 0.00 0.00 5.12
2099 4812 1.737793 CCATCACACTAAAAGCCCGTC 59.262 52.381 0.00 0.00 0.00 4.79
2100 4813 1.613255 CCCATCACACTAAAAGCCCGT 60.613 52.381 0.00 0.00 0.00 5.28
2101 4814 1.094785 CCCATCACACTAAAAGCCCG 58.905 55.000 0.00 0.00 0.00 6.13
2102 4815 0.817654 GCCCATCACACTAAAAGCCC 59.182 55.000 0.00 0.00 0.00 5.19
2103 4816 0.817654 GGCCCATCACACTAAAAGCC 59.182 55.000 0.00 0.00 0.00 4.35
2104 4817 0.451783 CGGCCCATCACACTAAAAGC 59.548 55.000 0.00 0.00 0.00 3.51
2105 4818 1.094785 CCGGCCCATCACACTAAAAG 58.905 55.000 0.00 0.00 0.00 2.27
2106 4819 0.322997 CCCGGCCCATCACACTAAAA 60.323 55.000 0.00 0.00 0.00 1.52
2107 4820 1.301623 CCCGGCCCATCACACTAAA 59.698 57.895 0.00 0.00 0.00 1.85
2108 4821 2.994699 CCCGGCCCATCACACTAA 59.005 61.111 0.00 0.00 0.00 2.24
2109 4822 3.792736 GCCCGGCCCATCACACTA 61.793 66.667 0.00 0.00 0.00 2.74
2128 4841 3.116463 GCCTAAAAATCGGGCCCG 58.884 61.111 39.13 39.13 39.96 6.13
2131 4844 1.452470 TCGGGCCTAAAAATCGGGC 60.452 57.895 0.84 0.00 44.59 6.13
2132 4845 1.433837 CGTCGGGCCTAAAAATCGGG 61.434 60.000 0.84 0.00 0.00 5.14
2133 4846 1.433837 CCGTCGGGCCTAAAAATCGG 61.434 60.000 2.34 4.24 0.00 4.18
2134 4847 2.011453 CCGTCGGGCCTAAAAATCG 58.989 57.895 2.34 0.00 0.00 3.34
2167 4880 2.600470 AAAAACCCAGGCCCGAGC 60.600 61.111 0.00 0.00 38.76 5.03
2181 4894 3.077359 CAACCAAAGCCCAACACAAAAA 58.923 40.909 0.00 0.00 0.00 1.94
2182 4895 2.616510 CCAACCAAAGCCCAACACAAAA 60.617 45.455 0.00 0.00 0.00 2.44
2183 4896 1.065854 CCAACCAAAGCCCAACACAAA 60.066 47.619 0.00 0.00 0.00 2.83
2184 4897 0.539051 CCAACCAAAGCCCAACACAA 59.461 50.000 0.00 0.00 0.00 3.33
2185 4898 1.965754 GCCAACCAAAGCCCAACACA 61.966 55.000 0.00 0.00 0.00 3.72
2186 4899 1.227527 GCCAACCAAAGCCCAACAC 60.228 57.895 0.00 0.00 0.00 3.32
2187 4900 2.439104 GGCCAACCAAAGCCCAACA 61.439 57.895 0.00 0.00 43.76 3.33
2188 4901 2.425592 GGCCAACCAAAGCCCAAC 59.574 61.111 0.00 0.00 43.76 3.77
2214 4927 0.474184 ATACCTGGCCATTCTTCGGG 59.526 55.000 5.51 4.26 0.00 5.14
2215 4928 2.632996 TCTATACCTGGCCATTCTTCGG 59.367 50.000 5.51 5.16 0.00 4.30
2216 4929 4.248859 CATCTATACCTGGCCATTCTTCG 58.751 47.826 5.51 0.00 0.00 3.79
2217 4930 4.566488 CCCATCTATACCTGGCCATTCTTC 60.566 50.000 5.51 0.00 0.00 2.87
2218 4931 3.331889 CCCATCTATACCTGGCCATTCTT 59.668 47.826 5.51 0.00 0.00 2.52
2219 4932 2.915604 CCCATCTATACCTGGCCATTCT 59.084 50.000 5.51 0.00 0.00 2.40
2220 4933 2.912956 TCCCATCTATACCTGGCCATTC 59.087 50.000 5.51 0.00 0.00 2.67
2221 4934 2.915604 CTCCCATCTATACCTGGCCATT 59.084 50.000 5.51 0.00 0.00 3.16
2222 4935 2.157942 ACTCCCATCTATACCTGGCCAT 60.158 50.000 5.51 0.00 0.00 4.40
2223 4936 1.223077 ACTCCCATCTATACCTGGCCA 59.777 52.381 4.71 4.71 0.00 5.36
2224 4937 1.903183 GACTCCCATCTATACCTGGCC 59.097 57.143 0.00 0.00 0.00 5.36
2225 4938 2.300437 GTGACTCCCATCTATACCTGGC 59.700 54.545 0.00 0.00 0.00 4.85
2226 4939 3.322254 GTGTGACTCCCATCTATACCTGG 59.678 52.174 0.00 0.00 0.00 4.45
2227 4940 3.960755 TGTGTGACTCCCATCTATACCTG 59.039 47.826 0.00 0.00 0.00 4.00
2228 4941 4.265856 TGTGTGACTCCCATCTATACCT 57.734 45.455 0.00 0.00 0.00 3.08
2229 4942 6.665992 TTATGTGTGACTCCCATCTATACC 57.334 41.667 0.00 0.00 0.00 2.73
2230 4943 6.015010 AGCTTATGTGTGACTCCCATCTATAC 60.015 42.308 0.00 0.00 0.00 1.47
2231 4944 6.015095 CAGCTTATGTGTGACTCCCATCTATA 60.015 42.308 0.00 0.00 0.00 1.31
2232 4945 4.904251 AGCTTATGTGTGACTCCCATCTAT 59.096 41.667 0.00 0.00 0.00 1.98
2233 4946 4.100035 CAGCTTATGTGTGACTCCCATCTA 59.900 45.833 0.00 0.00 0.00 1.98
2262 4975 8.999220 AAGTTTAAGTAGGTGTAGCATTACTC 57.001 34.615 0.00 0.00 0.00 2.59
2263 4976 9.866798 GTAAGTTTAAGTAGGTGTAGCATTACT 57.133 33.333 0.00 0.00 0.00 2.24
2264 4977 9.643693 TGTAAGTTTAAGTAGGTGTAGCATTAC 57.356 33.333 0.00 0.00 0.00 1.89
2268 4981 9.246670 TCTATGTAAGTTTAAGTAGGTGTAGCA 57.753 33.333 0.00 0.00 0.00 3.49
2269 4982 9.733219 CTCTATGTAAGTTTAAGTAGGTGTAGC 57.267 37.037 0.00 0.00 0.00 3.58
2290 5003 9.797473 GCGTTAACTTTTACGTAAAAACTCTAT 57.203 29.630 28.09 15.60 39.80 1.98
2291 5004 7.995998 CGCGTTAACTTTTACGTAAAAACTCTA 59.004 33.333 28.09 16.36 39.80 2.43
2292 5005 6.840789 CGCGTTAACTTTTACGTAAAAACTCT 59.159 34.615 28.09 17.15 39.80 3.24
2293 5006 6.623353 ACGCGTTAACTTTTACGTAAAAACTC 59.377 34.615 28.09 18.83 39.80 3.01
2294 5007 6.474364 ACGCGTTAACTTTTACGTAAAAACT 58.526 32.000 28.09 21.03 39.80 2.66
2295 5008 6.695690 ACGCGTTAACTTTTACGTAAAAAC 57.304 33.333 28.09 22.40 39.80 2.43
2296 5009 7.785665 GTCTACGCGTTAACTTTTACGTAAAAA 59.214 33.333 28.09 15.15 39.80 1.94
2297 5010 7.043986 TGTCTACGCGTTAACTTTTACGTAAAA 60.044 33.333 26.99 26.99 39.80 1.52
2298 5011 6.415280 TGTCTACGCGTTAACTTTTACGTAAA 59.585 34.615 20.78 16.59 39.80 2.01
2299 5012 5.910166 TGTCTACGCGTTAACTTTTACGTAA 59.090 36.000 20.78 3.29 39.80 3.18
2300 5013 5.444983 TGTCTACGCGTTAACTTTTACGTA 58.555 37.500 20.78 8.73 39.80 3.57
2301 5014 4.286910 TGTCTACGCGTTAACTTTTACGT 58.713 39.130 20.78 8.09 39.80 3.57
2302 5015 4.866849 TGTCTACGCGTTAACTTTTACG 57.133 40.909 20.78 2.64 40.55 3.18
2303 5016 5.445010 CCCATGTCTACGCGTTAACTTTTAC 60.445 44.000 20.78 5.11 0.00 2.01
2304 5017 4.626604 CCCATGTCTACGCGTTAACTTTTA 59.373 41.667 20.78 0.26 0.00 1.52
2305 5018 3.434299 CCCATGTCTACGCGTTAACTTTT 59.566 43.478 20.78 3.07 0.00 2.27
2306 5019 2.997986 CCCATGTCTACGCGTTAACTTT 59.002 45.455 20.78 5.55 0.00 2.66
2307 5020 2.231964 TCCCATGTCTACGCGTTAACTT 59.768 45.455 20.78 11.52 0.00 2.66
2308 5021 1.820519 TCCCATGTCTACGCGTTAACT 59.179 47.619 20.78 3.63 0.00 2.24
2309 5022 2.282701 TCCCATGTCTACGCGTTAAC 57.717 50.000 20.78 16.89 0.00 2.01
2310 5023 3.119065 TCAATCCCATGTCTACGCGTTAA 60.119 43.478 20.78 2.33 0.00 2.01
2311 5024 2.427812 TCAATCCCATGTCTACGCGTTA 59.572 45.455 20.78 2.75 0.00 3.18
2312 5025 1.206132 TCAATCCCATGTCTACGCGTT 59.794 47.619 20.78 0.80 0.00 4.84
2313 5026 0.821517 TCAATCCCATGTCTACGCGT 59.178 50.000 19.17 19.17 0.00 6.01
2314 5027 1.934589 TTCAATCCCATGTCTACGCG 58.065 50.000 3.53 3.53 0.00 6.01
2315 5028 2.476619 CGATTCAATCCCATGTCTACGC 59.523 50.000 0.00 0.00 0.00 4.42
2316 5029 3.977427 TCGATTCAATCCCATGTCTACG 58.023 45.455 0.00 0.00 0.00 3.51
2317 5030 4.692625 CCATCGATTCAATCCCATGTCTAC 59.307 45.833 0.00 0.00 0.00 2.59
2318 5031 4.263025 CCCATCGATTCAATCCCATGTCTA 60.263 45.833 0.00 0.00 0.00 2.59
2319 5032 3.497405 CCCATCGATTCAATCCCATGTCT 60.497 47.826 0.00 0.00 0.00 3.41
2320 5033 2.816087 CCCATCGATTCAATCCCATGTC 59.184 50.000 0.00 0.00 0.00 3.06
2321 5034 2.489619 CCCCATCGATTCAATCCCATGT 60.490 50.000 0.00 0.00 0.00 3.21
2322 5035 2.165167 CCCCATCGATTCAATCCCATG 58.835 52.381 0.00 0.00 0.00 3.66
2323 5036 2.040813 CTCCCCATCGATTCAATCCCAT 59.959 50.000 0.00 0.00 0.00 4.00
2324 5037 1.421268 CTCCCCATCGATTCAATCCCA 59.579 52.381 0.00 0.00 0.00 4.37
2325 5038 1.271597 CCTCCCCATCGATTCAATCCC 60.272 57.143 0.00 0.00 0.00 3.85
2326 5039 1.699634 TCCTCCCCATCGATTCAATCC 59.300 52.381 0.00 0.00 0.00 3.01
2327 5040 3.406764 CTTCCTCCCCATCGATTCAATC 58.593 50.000 0.00 0.00 0.00 2.67
2328 5041 2.107204 CCTTCCTCCCCATCGATTCAAT 59.893 50.000 0.00 0.00 0.00 2.57
2329 5042 1.490490 CCTTCCTCCCCATCGATTCAA 59.510 52.381 0.00 0.00 0.00 2.69
2330 5043 1.131638 CCTTCCTCCCCATCGATTCA 58.868 55.000 0.00 0.00 0.00 2.57
2331 5044 0.398318 CCCTTCCTCCCCATCGATTC 59.602 60.000 0.00 0.00 0.00 2.52
2332 5045 1.709994 GCCCTTCCTCCCCATCGATT 61.710 60.000 0.00 0.00 0.00 3.34
2333 5046 2.150051 GCCCTTCCTCCCCATCGAT 61.150 63.158 0.00 0.00 0.00 3.59
2334 5047 2.768344 GCCCTTCCTCCCCATCGA 60.768 66.667 0.00 0.00 0.00 3.59
2335 5048 3.878667 GGCCCTTCCTCCCCATCG 61.879 72.222 0.00 0.00 0.00 3.84
2336 5049 3.502875 GGGCCCTTCCTCCCCATC 61.503 72.222 17.04 0.00 38.70 3.51
2337 5050 4.386100 TGGGCCCTTCCTCCCCAT 62.386 66.667 25.70 0.00 43.67 4.00
2338 5051 4.626745 TTGGGCCCTTCCTCCCCA 62.627 66.667 25.70 0.00 46.73 4.96
2339 5052 4.062032 GTTGGGCCCTTCCTCCCC 62.062 72.222 25.70 0.00 41.92 4.81
2340 5053 3.264845 TGTTGGGCCCTTCCTCCC 61.265 66.667 25.70 3.15 42.93 4.30
2341 5054 2.035783 GTGTTGGGCCCTTCCTCC 59.964 66.667 25.70 4.66 34.39 4.30
2342 5055 2.035783 GGTGTTGGGCCCTTCCTC 59.964 66.667 25.70 11.06 34.39 3.71
2343 5056 2.091283 AAGGTGTTGGGCCCTTCCT 61.091 57.895 25.70 20.66 36.29 3.36
2344 5057 2.526110 AAGGTGTTGGGCCCTTCC 59.474 61.111 25.70 18.76 36.29 3.46
2346 5059 0.031616 TTTGAAGGTGTTGGGCCCTT 60.032 50.000 25.70 7.51 43.72 3.95
2347 5060 0.031616 TTTTGAAGGTGTTGGGCCCT 60.032 50.000 25.70 0.00 0.00 5.19
2348 5061 1.001974 GATTTTGAAGGTGTTGGGCCC 59.998 52.381 17.59 17.59 0.00 5.80
2349 5062 1.691434 TGATTTTGAAGGTGTTGGGCC 59.309 47.619 0.00 0.00 0.00 5.80
2350 5063 3.392882 CTTGATTTTGAAGGTGTTGGGC 58.607 45.455 0.00 0.00 0.00 5.36
2351 5064 3.244181 CCCTTGATTTTGAAGGTGTTGGG 60.244 47.826 0.00 0.00 38.73 4.12
2352 5065 3.244181 CCCCTTGATTTTGAAGGTGTTGG 60.244 47.826 0.00 0.00 38.73 3.77
2353 5066 3.244181 CCCCCTTGATTTTGAAGGTGTTG 60.244 47.826 0.00 0.00 38.73 3.33
2354 5067 2.972021 CCCCCTTGATTTTGAAGGTGTT 59.028 45.455 0.00 0.00 38.73 3.32
2355 5068 2.608623 CCCCCTTGATTTTGAAGGTGT 58.391 47.619 0.00 0.00 38.73 4.16
2378 5091 5.045066 ACTTTTCTAACCAATACTCTCCCCC 60.045 44.000 0.00 0.00 0.00 5.40
2379 5092 6.063496 ACTTTTCTAACCAATACTCTCCCC 57.937 41.667 0.00 0.00 0.00 4.81
2380 5093 7.277319 CGTAACTTTTCTAACCAATACTCTCCC 59.723 40.741 0.00 0.00 0.00 4.30
2381 5094 7.816513 ACGTAACTTTTCTAACCAATACTCTCC 59.183 37.037 0.00 0.00 0.00 3.71
2382 5095 8.754230 ACGTAACTTTTCTAACCAATACTCTC 57.246 34.615 0.00 0.00 0.00 3.20
2421 5134 9.929180 GCTCAATAATCCTACATCTACATACAA 57.071 33.333 0.00 0.00 0.00 2.41
2422 5135 9.314133 AGCTCAATAATCCTACATCTACATACA 57.686 33.333 0.00 0.00 0.00 2.29
2423 5136 9.579768 CAGCTCAATAATCCTACATCTACATAC 57.420 37.037 0.00 0.00 0.00 2.39
2424 5137 8.253810 GCAGCTCAATAATCCTACATCTACATA 58.746 37.037 0.00 0.00 0.00 2.29
2425 5138 7.102346 GCAGCTCAATAATCCTACATCTACAT 58.898 38.462 0.00 0.00 0.00 2.29
2426 5139 6.041979 TGCAGCTCAATAATCCTACATCTACA 59.958 38.462 0.00 0.00 0.00 2.74
2427 5140 6.367422 GTGCAGCTCAATAATCCTACATCTAC 59.633 42.308 0.00 0.00 0.00 2.59
2428 5141 6.268617 AGTGCAGCTCAATAATCCTACATCTA 59.731 38.462 0.00 0.00 0.00 1.98
2429 5142 5.071519 AGTGCAGCTCAATAATCCTACATCT 59.928 40.000 0.00 0.00 0.00 2.90
2430 5143 5.178996 CAGTGCAGCTCAATAATCCTACATC 59.821 44.000 0.00 0.00 0.00 3.06
2431 5144 5.061853 CAGTGCAGCTCAATAATCCTACAT 58.938 41.667 0.00 0.00 0.00 2.29
2432 5145 4.445453 CAGTGCAGCTCAATAATCCTACA 58.555 43.478 0.00 0.00 0.00 2.74
2433 5146 3.249559 GCAGTGCAGCTCAATAATCCTAC 59.750 47.826 11.09 0.00 0.00 3.18
2434 5147 3.118298 TGCAGTGCAGCTCAATAATCCTA 60.118 43.478 15.37 0.00 33.32 2.94
2435 5148 2.295885 GCAGTGCAGCTCAATAATCCT 58.704 47.619 11.09 0.00 0.00 3.24
2436 5149 2.019249 TGCAGTGCAGCTCAATAATCC 58.981 47.619 15.37 0.00 33.32 3.01
2437 5150 3.606384 CGATGCAGTGCAGCTCAATAATC 60.606 47.826 28.89 14.49 43.23 1.75
2438 5151 2.289820 CGATGCAGTGCAGCTCAATAAT 59.710 45.455 28.89 6.79 43.23 1.28
2439 5152 1.667212 CGATGCAGTGCAGCTCAATAA 59.333 47.619 28.89 0.00 43.23 1.40
2440 5153 1.292992 CGATGCAGTGCAGCTCAATA 58.707 50.000 28.89 0.46 43.23 1.90
2441 5154 0.675837 ACGATGCAGTGCAGCTCAAT 60.676 50.000 28.89 9.15 43.23 2.57
2442 5155 1.301953 ACGATGCAGTGCAGCTCAA 60.302 52.632 28.89 2.07 43.23 3.02
2443 5156 2.030958 CACGATGCAGTGCAGCTCA 61.031 57.895 28.89 2.88 43.23 4.26
2444 5157 2.783275 CACGATGCAGTGCAGCTC 59.217 61.111 28.89 18.64 43.23 4.09
2454 5167 2.107953 GGAGAGGAGGCACGATGC 59.892 66.667 0.00 0.00 44.08 3.91
2474 5187 9.545105 TTTAGTTAGAATTAGAAACACAACCGA 57.455 29.630 0.00 0.00 0.00 4.69
2490 5203 6.259167 ACGCACATGTGTTCTTTTAGTTAGAA 59.741 34.615 26.01 0.00 34.75 2.10
2492 5205 5.985781 ACGCACATGTGTTCTTTTAGTTAG 58.014 37.500 26.01 0.00 34.75 2.34
2493 5206 5.994887 ACGCACATGTGTTCTTTTAGTTA 57.005 34.783 26.01 0.00 34.75 2.24
2494 5207 4.893424 ACGCACATGTGTTCTTTTAGTT 57.107 36.364 26.01 0.00 34.75 2.24
2496 5209 3.421888 GCAACGCACATGTGTTCTTTTAG 59.578 43.478 26.01 10.00 45.84 1.85
2497 5210 3.181496 TGCAACGCACATGTGTTCTTTTA 60.181 39.130 26.01 6.22 45.84 1.52
2498 5211 2.192624 GCAACGCACATGTGTTCTTTT 58.807 42.857 26.01 10.04 45.84 2.27
2499 5212 1.133982 TGCAACGCACATGTGTTCTTT 59.866 42.857 26.01 11.68 45.84 2.52
2500 5213 0.737804 TGCAACGCACATGTGTTCTT 59.262 45.000 26.01 12.35 45.84 2.52
2501 5214 0.737804 TTGCAACGCACATGTGTTCT 59.262 45.000 26.01 8.61 45.84 3.01
2502 5215 0.845768 GTTGCAACGCACATGTGTTC 59.154 50.000 26.01 10.31 45.84 3.18
2504 5217 1.298264 CGTTGCAACGCACATGTGT 60.298 52.632 35.89 5.37 46.06 3.72
2505 5218 3.513406 CGTTGCAACGCACATGTG 58.487 55.556 35.89 21.83 46.06 3.21
2514 5227 1.528292 TAATGTGGCCCCGTTGCAAC 61.528 55.000 19.89 19.89 35.65 4.17
2515 5228 0.827925 TTAATGTGGCCCCGTTGCAA 60.828 50.000 0.00 0.00 0.00 4.08
2516 5229 1.228583 TTAATGTGGCCCCGTTGCA 60.229 52.632 0.00 0.00 0.00 4.08
2517 5230 1.214325 GTTAATGTGGCCCCGTTGC 59.786 57.895 0.00 0.00 0.00 4.17
2518 5231 1.253100 AAGTTAATGTGGCCCCGTTG 58.747 50.000 0.00 0.00 0.00 4.10
2519 5232 2.883122 TAAGTTAATGTGGCCCCGTT 57.117 45.000 0.00 0.00 0.00 4.44
2520 5233 2.883122 TTAAGTTAATGTGGCCCCGT 57.117 45.000 0.00 0.00 0.00 5.28
2521 5234 3.349022 TCTTTAAGTTAATGTGGCCCCG 58.651 45.455 0.00 0.00 0.00 5.73
2522 5235 4.341487 ACTCTTTAAGTTAATGTGGCCCC 58.659 43.478 0.00 0.00 33.03 5.80
2523 5236 5.977489 AACTCTTTAAGTTAATGTGGCCC 57.023 39.130 0.00 0.00 46.55 5.80
2557 5270 9.056005 GCCAATGTAACTTGATATGTATGAGAA 57.944 33.333 0.00 0.00 0.00 2.87
2558 5271 7.384932 CGCCAATGTAACTTGATATGTATGAGA 59.615 37.037 0.00 0.00 0.00 3.27
2559 5272 7.384932 TCGCCAATGTAACTTGATATGTATGAG 59.615 37.037 0.00 0.00 0.00 2.90
2560 5273 7.170828 GTCGCCAATGTAACTTGATATGTATGA 59.829 37.037 0.00 0.00 0.00 2.15
2561 5274 7.290842 GTCGCCAATGTAACTTGATATGTATG 58.709 38.462 0.00 0.00 0.00 2.39
2562 5275 6.426937 GGTCGCCAATGTAACTTGATATGTAT 59.573 38.462 0.00 0.00 0.00 2.29
2563 5276 5.756347 GGTCGCCAATGTAACTTGATATGTA 59.244 40.000 0.00 0.00 0.00 2.29
2564 5277 4.574828 GGTCGCCAATGTAACTTGATATGT 59.425 41.667 0.00 0.00 0.00 2.29
2565 5278 4.816385 AGGTCGCCAATGTAACTTGATATG 59.184 41.667 0.00 0.00 0.00 1.78
2566 5279 5.036117 AGGTCGCCAATGTAACTTGATAT 57.964 39.130 0.00 0.00 0.00 1.63
2567 5280 4.481368 AGGTCGCCAATGTAACTTGATA 57.519 40.909 0.00 0.00 0.00 2.15
2568 5281 3.350219 AGGTCGCCAATGTAACTTGAT 57.650 42.857 0.00 0.00 0.00 2.57
2569 5282 2.851263 AGGTCGCCAATGTAACTTGA 57.149 45.000 0.00 0.00 0.00 3.02
2570 5283 3.915437 AAAGGTCGCCAATGTAACTTG 57.085 42.857 0.00 0.00 0.00 3.16
2571 5284 4.929819 AAAAAGGTCGCCAATGTAACTT 57.070 36.364 0.00 0.00 0.00 2.66
2589 5302 6.968263 TGTGTGAGGATTTGATGGTAAAAA 57.032 33.333 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.