Multiple sequence alignment - TraesCS7A01G457700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G457700 chr7A 100.000 3386 0 0 1 3386 652752907 652756292 0.000000e+00 6253.0
1 TraesCS7A01G457700 chr7A 83.197 1101 126 32 1806 2879 405397669 405398737 0.000000e+00 953.0
2 TraesCS7A01G457700 chr7A 81.629 1105 137 34 1806 2879 90435174 90436243 0.000000e+00 856.0
3 TraesCS7A01G457700 chr7A 100.000 324 0 0 3647 3970 652756553 652756876 2.040000e-167 599.0
4 TraesCS7A01G457700 chr7A 83.019 106 18 0 2876 2981 90436417 90436522 3.270000e-16 97.1
5 TraesCS7A01G457700 chr7D 95.668 1131 39 7 679 1808 566563887 566565008 0.000000e+00 1808.0
6 TraesCS7A01G457700 chr7D 94.457 902 34 6 1980 2879 566566780 566567667 0.000000e+00 1375.0
7 TraesCS7A01G457700 chr7D 96.561 378 13 0 2876 3253 566567838 566568215 9.370000e-176 627.0
8 TraesCS7A01G457700 chr7D 91.150 452 30 7 225 667 566561773 566562223 4.390000e-169 604.0
9 TraesCS7A01G457700 chr7D 93.519 324 21 0 3647 3970 566570271 566570594 2.150000e-132 483.0
10 TraesCS7A01G457700 chr7D 85.126 437 49 9 216 639 527737197 527737630 2.190000e-117 433.0
11 TraesCS7A01G457700 chr7D 78.333 600 103 16 1214 1808 226458912 226458335 2.920000e-96 363.0
12 TraesCS7A01G457700 chr7D 77.869 488 91 12 1299 1782 514136378 514135904 1.810000e-73 287.0
13 TraesCS7A01G457700 chr7D 93.889 180 10 1 1799 1978 566566309 566566487 1.820000e-68 270.0
14 TraesCS7A01G457700 chr7D 88.546 227 18 6 1 222 566561501 566561724 6.540000e-68 268.0
15 TraesCS7A01G457700 chr7D 96.324 136 4 1 3241 3376 566570015 566570149 5.160000e-54 222.0
16 TraesCS7A01G457700 chr7D 81.818 121 18 4 1206 1325 84479030 84479147 9.080000e-17 99.0
17 TraesCS7A01G457700 chr7D 86.111 72 6 2 2799 2867 226457312 226457242 1.530000e-09 75.0
18 TraesCS7A01G457700 chr7D 100.000 29 0 0 659 687 566562233 566562261 2.000000e-03 54.7
19 TraesCS7A01G457700 chr2D 81.975 1104 140 30 1806 2879 648504099 648505173 0.000000e+00 881.0
20 TraesCS7A01G457700 chr2D 77.790 923 158 31 1805 2690 88258189 88257277 3.510000e-145 525.0
21 TraesCS7A01G457700 chr2D 83.729 547 70 16 1268 1808 88258754 88258221 2.130000e-137 499.0
22 TraesCS7A01G457700 chr2D 82.182 550 68 18 1268 1808 88262263 88261735 2.810000e-121 446.0
23 TraesCS7A01G457700 chr2D 79.791 574 95 15 1237 1808 556716719 556716165 7.990000e-107 398.0
24 TraesCS7A01G457700 chr2D 75.740 338 32 25 954 1277 88259949 88259648 1.500000e-24 124.0
25 TraesCS7A01G457700 chr4A 79.927 1101 160 33 1805 2879 244489824 244488759 0.000000e+00 752.0
26 TraesCS7A01G457700 chr4A 78.399 537 71 21 65 560 479410218 479409686 1.390000e-79 307.0
27 TraesCS7A01G457700 chr6B 85.847 537 60 11 2352 2879 449920333 449920862 1.250000e-154 556.0
28 TraesCS7A01G457700 chr6B 80.738 488 71 8 1799 2264 449919800 449920286 3.770000e-95 359.0
29 TraesCS7A01G457700 chr6B 88.235 170 19 1 1859 2028 599459988 599460156 6.730000e-48 202.0
30 TraesCS7A01G457700 chr2A 78.953 879 120 40 892 1734 770629758 770630607 4.510000e-149 538.0
31 TraesCS7A01G457700 chr2A 77.989 368 62 9 84 434 543185522 543185157 3.110000e-51 213.0
32 TraesCS7A01G457700 chr2A 83.784 111 18 0 2879 2989 33587038 33586928 5.430000e-19 106.0
33 TraesCS7A01G457700 chr5D 91.159 328 28 1 3030 3357 336414785 336415111 1.010000e-120 444.0
34 TraesCS7A01G457700 chr7B 79.772 613 98 22 1202 1808 671742266 671741674 4.740000e-114 422.0
35 TraesCS7A01G457700 chr7B 79.445 613 103 20 1202 1808 671730470 671729875 2.850000e-111 412.0
36 TraesCS7A01G457700 chr7B 88.462 78 5 1 2794 2867 671728837 671728760 1.520000e-14 91.6
37 TraesCS7A01G457700 chr4B 81.963 438 60 8 215 637 87709904 87710337 1.760000e-93 353.0
38 TraesCS7A01G457700 chr4B 80.920 435 67 7 217 639 87708844 87709274 2.960000e-86 329.0
39 TraesCS7A01G457700 chr1A 80.477 461 68 18 1213 1667 381320470 381320914 2.290000e-87 333.0
40 TraesCS7A01G457700 chr1A 82.883 111 19 0 2879 2989 84057373 84057263 2.520000e-17 100.0
41 TraesCS7A01G457700 chr5B 78.189 486 86 17 1300 1779 158796477 158796948 3.880000e-75 292.0
42 TraesCS7A01G457700 chr5B 88.372 86 9 1 554 639 557282128 557282044 7.020000e-18 102.0
43 TraesCS7A01G457700 chr6D 85.217 230 22 6 217 434 469073747 469073518 3.990000e-55 226.0
44 TraesCS7A01G457700 chr6A 83.182 220 23 8 228 434 612172503 612172285 5.240000e-44 189.0
45 TraesCS7A01G457700 chr1D 77.159 359 56 14 84 434 370310339 370309999 6.770000e-43 185.0
46 TraesCS7A01G457700 chr2B 77.778 369 35 19 954 1310 141533949 141533616 2.440000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G457700 chr7A 652752907 652756876 3969 False 3426.000000 6253 100.000000 1 3970 2 chr7A.!!$F3 3969
1 TraesCS7A01G457700 chr7A 405397669 405398737 1068 False 953.000000 953 83.197000 1806 2879 1 chr7A.!!$F1 1073
2 TraesCS7A01G457700 chr7A 90435174 90436522 1348 False 476.550000 856 82.324000 1806 2981 2 chr7A.!!$F2 1175
3 TraesCS7A01G457700 chr7D 566561501 566570594 9093 False 634.633333 1808 94.457111 1 3970 9 chr7D.!!$F3 3969
4 TraesCS7A01G457700 chr7D 226457242 226458912 1670 True 219.000000 363 82.222000 1214 2867 2 chr7D.!!$R2 1653
5 TraesCS7A01G457700 chr2D 648504099 648505173 1074 False 881.000000 881 81.975000 1806 2879 1 chr2D.!!$F1 1073
6 TraesCS7A01G457700 chr2D 88257277 88262263 4986 True 398.500000 525 79.860250 954 2690 4 chr2D.!!$R2 1736
7 TraesCS7A01G457700 chr2D 556716165 556716719 554 True 398.000000 398 79.791000 1237 1808 1 chr2D.!!$R1 571
8 TraesCS7A01G457700 chr4A 244488759 244489824 1065 True 752.000000 752 79.927000 1805 2879 1 chr4A.!!$R1 1074
9 TraesCS7A01G457700 chr4A 479409686 479410218 532 True 307.000000 307 78.399000 65 560 1 chr4A.!!$R2 495
10 TraesCS7A01G457700 chr6B 449919800 449920862 1062 False 457.500000 556 83.292500 1799 2879 2 chr6B.!!$F2 1080
11 TraesCS7A01G457700 chr2A 770629758 770630607 849 False 538.000000 538 78.953000 892 1734 1 chr2A.!!$F1 842
12 TraesCS7A01G457700 chr7B 671741674 671742266 592 True 422.000000 422 79.772000 1202 1808 1 chr7B.!!$R1 606
13 TraesCS7A01G457700 chr7B 671728760 671730470 1710 True 251.800000 412 83.953500 1202 2867 2 chr7B.!!$R2 1665
14 TraesCS7A01G457700 chr4B 87708844 87710337 1493 False 341.000000 353 81.441500 215 639 2 chr4B.!!$F1 424

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 185 0.179045 GTATCCGCTGGAGGTGCATT 60.179 55.0 0.0 0.0 34.05 3.56 F
181 186 0.546122 TATCCGCTGGAGGTGCATTT 59.454 50.0 0.0 0.0 34.05 2.32 F
1533 5033 0.865111 TCTGTGTGTGCGTAACATGC 59.135 50.0 0.0 0.0 41.97 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1701 5206 0.446222 CCAAATGAACGTCGCGGAAT 59.554 50.000 6.13 0.0 0.00 3.01 R
1797 5303 1.073763 TGTTTCCTGTCCCATGACCTG 59.926 52.381 0.00 0.0 41.01 4.00 R
3217 8654 0.335019 GGTTCCCCCTAAAGTGCCAT 59.665 55.000 0.00 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.931294 TCCACAGGCCGTCATATATTTAAA 58.069 37.500 0.00 0.00 0.00 1.52
34 35 9.191995 GGCCGTCATATATTTAAATTTCCAAAG 57.808 33.333 5.91 0.00 0.00 2.77
142 147 5.161358 GCCGTCTGATATATGTTCGATCAA 58.839 41.667 0.00 0.00 0.00 2.57
163 168 2.104859 CGTCGAGAGCACTCCCGTA 61.105 63.158 5.52 0.00 39.76 4.02
178 183 2.900273 GTATCCGCTGGAGGTGCA 59.100 61.111 3.76 0.00 34.05 4.57
180 185 0.179045 GTATCCGCTGGAGGTGCATT 60.179 55.000 0.00 0.00 34.05 3.56
181 186 0.546122 TATCCGCTGGAGGTGCATTT 59.454 50.000 0.00 0.00 34.05 2.32
188 193 2.242043 CTGGAGGTGCATTTGTTTCCT 58.758 47.619 0.00 0.00 0.00 3.36
191 196 1.340889 GAGGTGCATTTGTTTCCTGCA 59.659 47.619 0.00 0.00 43.20 4.41
193 198 2.137523 GGTGCATTTGTTTCCTGCAAG 58.862 47.619 0.00 0.00 46.51 4.01
195 200 2.796593 GTGCATTTGTTTCCTGCAAGTC 59.203 45.455 0.00 0.00 46.51 3.01
197 202 2.796593 GCATTTGTTTCCTGCAAGTCAC 59.203 45.455 0.00 0.00 35.96 3.67
199 204 2.435372 TTGTTTCCTGCAAGTCACCT 57.565 45.000 0.00 0.00 0.00 4.00
201 206 2.733956 TGTTTCCTGCAAGTCACCTTT 58.266 42.857 0.00 0.00 0.00 3.11
202 207 2.687935 TGTTTCCTGCAAGTCACCTTTC 59.312 45.455 0.00 0.00 0.00 2.62
203 208 2.687935 GTTTCCTGCAAGTCACCTTTCA 59.312 45.455 0.00 0.00 0.00 2.69
206 211 2.260844 CTGCAAGTCACCTTTCAGGA 57.739 50.000 0.00 0.00 38.02 3.86
207 212 1.876156 CTGCAAGTCACCTTTCAGGAC 59.124 52.381 0.00 0.00 38.02 3.85
209 214 2.297701 GCAAGTCACCTTTCAGGACAA 58.702 47.619 0.00 0.00 37.67 3.18
210 215 2.687935 GCAAGTCACCTTTCAGGACAAA 59.312 45.455 0.00 0.00 37.67 2.83
211 216 3.489229 GCAAGTCACCTTTCAGGACAAAC 60.489 47.826 0.00 0.00 37.67 2.93
213 218 2.241176 AGTCACCTTTCAGGACAAACCA 59.759 45.455 0.00 0.00 37.67 3.67
216 221 3.888930 TCACCTTTCAGGACAAACCATTC 59.111 43.478 0.00 0.00 37.67 2.67
274 1139 2.998097 CTGGATTTGGGAGGGCGA 59.002 61.111 0.00 0.00 0.00 5.54
312 1188 1.755393 GATCGGGGCCTATCCAACGT 61.755 60.000 0.84 0.00 37.79 3.99
314 1190 2.516225 GGGGCCTATCCAACGTGC 60.516 66.667 0.84 0.00 36.21 5.34
390 1266 3.930035 ACGGATAAGAGATTCCTTCCCT 58.070 45.455 0.00 0.00 0.00 4.20
393 1270 4.262249 CGGATAAGAGATTCCTTCCCTCAC 60.262 50.000 0.00 0.00 0.00 3.51
534 1415 1.404391 GATGGCGTACGAGAGAGGAAA 59.596 52.381 21.65 0.00 0.00 3.13
563 1444 5.417754 TTCAGAGAAGTAGTACGAGAGGA 57.582 43.478 0.00 0.00 0.00 3.71
687 1586 3.834231 CAGGAATTTTGGAGTGGGATGTT 59.166 43.478 0.00 0.00 0.00 2.71
689 1588 3.195610 GGAATTTTGGAGTGGGATGTTCC 59.804 47.826 0.00 0.00 35.23 3.62
863 3396 9.507329 TTCTGAATTTCTGTAGCTCATAGTTTT 57.493 29.630 0.00 0.00 0.00 2.43
1040 3577 4.275936 TGGACTTTTGCTTGAAGTAGCTTC 59.724 41.667 0.00 2.22 41.76 3.86
1138 3709 2.821969 AGTCAGGCCTGCTTATGTTTTG 59.178 45.455 28.91 0.13 0.00 2.44
1250 3833 6.107343 ACATCACTAGATATGCATGCTCATC 58.893 40.000 20.33 19.37 31.88 2.92
1291 4786 9.201424 CATTTTTATTTGTTTTCGCAGCATATG 57.799 29.630 0.00 0.00 0.00 1.78
1470 4965 8.140112 AGTTATGAGGATTGACACTAAGAAGT 57.860 34.615 0.00 0.00 35.91 3.01
1533 5033 0.865111 TCTGTGTGTGCGTAACATGC 59.135 50.000 0.00 0.00 41.97 4.06
1667 5172 2.575735 TCAATGTCCCATCTGGTAGCAA 59.424 45.455 0.00 0.00 34.77 3.91
1701 5206 1.047801 GCAAGAGGGGGAAAGCAAAA 58.952 50.000 0.00 0.00 0.00 2.44
1797 5303 4.386867 TGACGATGAGGAGACCATTAAC 57.613 45.455 0.00 0.00 0.00 2.01
1800 6616 3.133003 ACGATGAGGAGACCATTAACAGG 59.867 47.826 0.00 0.00 0.00 4.00
2107 7267 0.833287 CCACCTCGACATCCCAAGAT 59.167 55.000 0.00 0.00 0.00 2.40
2125 7285 5.920840 CCAAGATGATGCATTGTTGATCATC 59.079 40.000 13.80 13.80 46.97 2.92
2198 7358 2.013400 TGTTGTTGTTGCAGTCGACAT 58.987 42.857 19.50 0.00 36.54 3.06
2206 7366 1.103803 TGCAGTCGACATCCTAGACC 58.896 55.000 19.50 0.00 35.65 3.85
2217 7377 0.032515 TCCTAGACCATGGCTTCGGA 60.033 55.000 13.04 15.09 0.00 4.55
2358 7557 2.690786 GGTACACCTTACGCAACATCA 58.309 47.619 0.00 0.00 0.00 3.07
2410 7611 2.833338 CCCAAAGATCAATCCAAGGCAA 59.167 45.455 0.00 0.00 0.00 4.52
2893 8330 3.412386 ACTCTAAATTGTTTCCGCAGCT 58.588 40.909 0.00 0.00 0.00 4.24
2895 8332 3.146066 TCTAAATTGTTTCCGCAGCTGT 58.854 40.909 16.64 0.00 0.00 4.40
2913 8350 0.392461 GTCTAAGCAACCGGATGGCA 60.392 55.000 9.46 0.00 39.70 4.92
3156 8593 3.944087 AGATCAAAACCCTCGAGGAAAG 58.056 45.455 33.39 18.44 39.89 2.62
3180 8617 5.278266 GCTTGTTCCACATGCAGTTTAACTA 60.278 40.000 9.28 0.00 45.30 2.24
3193 8630 5.472137 GCAGTTTAACTACTTGGGTGATTGA 59.528 40.000 0.00 0.00 0.00 2.57
3195 8632 5.705905 AGTTTAACTACTTGGGTGATTGAGC 59.294 40.000 0.00 0.00 0.00 4.26
3217 8654 0.770557 AGGTTACCCAAGGTGGCTCA 60.771 55.000 0.00 0.00 36.19 4.26
3295 10544 2.447443 TCGTCCATTGAGCTCTACACT 58.553 47.619 16.19 0.00 0.00 3.55
3305 10554 7.869429 CCATTGAGCTCTACACTTTTTGAAATT 59.131 33.333 16.19 0.00 0.00 1.82
3308 10557 7.995289 TGAGCTCTACACTTTTTGAAATTTGA 58.005 30.769 16.19 0.00 0.00 2.69
3338 10587 3.685139 ATCGATCTCCCAATTGCGTAT 57.315 42.857 0.00 0.00 0.00 3.06
3362 10611 0.955919 GAAAGACCAAGGCAGGACCG 60.956 60.000 2.81 0.00 46.52 4.79
3705 10954 1.067142 TCCGTCTGGTCAAAGATTCCG 60.067 52.381 0.00 0.00 36.30 4.30
3740 10989 1.077625 CTCCCTATCCCTCCCTCCG 59.922 68.421 0.00 0.00 0.00 4.63
3751 11000 4.530857 CCCTCCGGTGATGGCGTC 62.531 72.222 4.76 0.00 0.00 5.19
3810 11059 2.700773 GCAACCTTCCCCATGCGAC 61.701 63.158 0.00 0.00 0.00 5.19
3814 11063 2.669133 CCTTCCCCATGCGACCTCA 61.669 63.158 0.00 0.00 0.00 3.86
3857 11106 3.702048 GTGGTGTGGCTCGCCCTA 61.702 66.667 15.88 0.00 45.41 3.53
3883 11132 1.541310 CCTAGCCACACCTTCCACGA 61.541 60.000 0.00 0.00 0.00 4.35
3927 11176 1.605058 CGAGCCCTTCTTCCTCCGAA 61.605 60.000 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.112634 GTGACTCCCTTGCAAAGTTTTTC 58.887 43.478 0.00 0.00 44.25 2.29
142 147 2.637383 GGGAGTGCTCTCGACGGTT 61.637 63.158 9.55 0.00 41.26 4.44
163 168 1.033746 CAAATGCACCTCCAGCGGAT 61.034 55.000 0.00 0.00 33.85 4.18
178 183 3.299503 AGGTGACTTGCAGGAAACAAAT 58.700 40.909 1.40 0.00 37.44 2.32
180 185 2.435372 AGGTGACTTGCAGGAAACAA 57.565 45.000 1.40 0.00 37.44 2.83
199 204 2.235016 CGGGAATGGTTTGTCCTGAAA 58.765 47.619 0.00 0.00 42.12 2.69
201 206 0.608035 GCGGGAATGGTTTGTCCTGA 60.608 55.000 2.66 0.00 42.12 3.86
202 207 0.893270 TGCGGGAATGGTTTGTCCTG 60.893 55.000 0.00 0.00 42.39 3.86
203 208 0.609131 CTGCGGGAATGGTTTGTCCT 60.609 55.000 0.00 0.00 37.07 3.85
205 210 0.240945 CACTGCGGGAATGGTTTGTC 59.759 55.000 0.00 0.00 0.00 3.18
206 211 1.178534 CCACTGCGGGAATGGTTTGT 61.179 55.000 0.00 0.00 0.00 2.83
207 212 1.586028 CCACTGCGGGAATGGTTTG 59.414 57.895 0.00 0.00 0.00 2.93
209 214 2.676471 GCCACTGCGGGAATGGTT 60.676 61.111 0.00 0.00 35.79 3.67
244 1109 3.991924 ATCCAGCCGCTCCCACTCT 62.992 63.158 0.00 0.00 0.00 3.24
312 1188 2.046988 CAGTCGTCCATGCCAGCA 60.047 61.111 0.00 0.00 0.00 4.41
314 1190 2.821366 GCCAGTCGTCCATGCCAG 60.821 66.667 0.00 0.00 0.00 4.85
390 1266 0.321564 CCACATCGGCCAGAAAGTGA 60.322 55.000 22.55 6.06 39.69 3.41
534 1415 6.688578 TCGTACTACTTCTCTGAAGCAAAAT 58.311 36.000 7.17 0.00 0.00 1.82
563 1444 6.126739 ACCCTTCTCTCTAAAACACAACTTCT 60.127 38.462 0.00 0.00 0.00 2.85
887 3420 8.160621 GCAGTATGGGCTACAAAAGCTATGAC 62.161 46.154 6.45 0.00 44.20 3.06
1138 3709 4.006319 AGCAAGCCTGACTAATTTCAGAC 58.994 43.478 8.45 0.00 45.19 3.51
1263 3856 7.239166 TGCTGCGAAAACAAATAAAAATGAA 57.761 28.000 0.00 0.00 0.00 2.57
1291 4786 1.429148 CCATCGAGTTTGGTAGGCGC 61.429 60.000 0.00 0.00 0.00 6.53
1521 5021 6.927933 AAATAAGAAAAGCATGTTACGCAC 57.072 33.333 0.00 0.00 0.00 5.34
1582 5087 1.917872 TCATTTAACCTGTGGGGCAC 58.082 50.000 0.00 0.00 39.10 5.01
1613 5118 1.538047 CATGTGTCTTGTGAAGGGGG 58.462 55.000 0.00 0.00 0.00 5.40
1627 5132 9.941664 GACATTGAATATCTTCTTAACCATGTG 57.058 33.333 0.00 0.00 32.29 3.21
1667 5172 3.126831 CTCTTGCCGAATTCTAGCGATT 58.873 45.455 3.52 0.00 0.00 3.34
1701 5206 0.446222 CCAAATGAACGTCGCGGAAT 59.554 50.000 6.13 0.00 0.00 3.01
1797 5303 1.073763 TGTTTCCTGTCCCATGACCTG 59.926 52.381 0.00 0.00 41.01 4.00
1800 6616 2.094675 CCATGTTTCCTGTCCCATGAC 58.905 52.381 0.00 0.00 42.12 3.06
1803 6619 1.892329 GCACCATGTTTCCTGTCCCAT 60.892 52.381 0.00 0.00 0.00 4.00
1876 6692 3.310774 CAGACAAAATATGCTCGTCCCAG 59.689 47.826 0.00 0.00 0.00 4.45
1922 6738 9.529823 TTACCGTCATTACTCTTATCCTGATAT 57.470 33.333 0.00 0.00 0.00 1.63
1937 6753 7.162761 TCAGGAATTTCACTTTACCGTCATTA 58.837 34.615 0.00 0.00 0.00 1.90
1943 6759 5.640732 CCAATCAGGAATTTCACTTTACCG 58.359 41.667 0.00 0.00 41.22 4.02
2107 7267 3.633418 TGGGATGATCAACAATGCATCA 58.367 40.909 0.00 0.00 39.02 3.07
2198 7358 0.032515 TCCGAAGCCATGGTCTAGGA 60.033 55.000 14.67 17.96 0.00 2.94
2217 7377 3.629142 AGAATACTTACAGGGCGCTTT 57.371 42.857 7.64 0.00 0.00 3.51
2248 7414 3.463944 AGAACAAAAGGTAGTGTGTCCG 58.536 45.455 0.00 0.00 0.00 4.79
2336 7535 0.672889 TGTTGCGTAAGGTGTACCGA 59.327 50.000 0.00 0.00 42.08 4.69
2338 7537 2.690786 TGATGTTGCGTAAGGTGTACC 58.309 47.619 0.00 0.00 38.28 3.34
2410 7611 3.474570 GGCGGCTCCTCTGGACAT 61.475 66.667 0.00 0.00 0.00 3.06
2577 7789 1.134995 CCTCGTGCACATTCTCTGCTA 60.135 52.381 18.64 0.00 35.53 3.49
2718 7961 6.365839 GCAGTCAACCAAATGATACGATATG 58.634 40.000 0.00 0.00 0.00 1.78
2786 8033 9.635520 CAATGCATAGAAACAAAAAGAGAGAAT 57.364 29.630 0.00 0.00 0.00 2.40
2867 8128 5.636837 TGCGGAAACAATTTAGAGTTATGC 58.363 37.500 0.00 0.00 0.00 3.14
2893 8330 0.392461 GCCATCCGGTTGCTTAGACA 60.392 55.000 7.02 0.00 33.28 3.41
2895 8332 0.546122 ATGCCATCCGGTTGCTTAGA 59.454 50.000 7.02 0.00 33.28 2.10
2913 8350 3.343617 CGGTTGTTGTAGTCCCATGAAT 58.656 45.455 0.00 0.00 0.00 2.57
3166 8603 4.759693 TCACCCAAGTAGTTAAACTGCATG 59.240 41.667 0.00 0.00 32.98 4.06
3180 8617 1.611673 CCTTCGCTCAATCACCCAAGT 60.612 52.381 0.00 0.00 0.00 3.16
3217 8654 0.335019 GGTTCCCCCTAAAGTGCCAT 59.665 55.000 0.00 0.00 0.00 4.40
3305 10554 5.163311 TGGGAGATCGATTATTCTTGCTCAA 60.163 40.000 0.00 0.00 0.00 3.02
3308 10557 4.963318 TGGGAGATCGATTATTCTTGCT 57.037 40.909 0.00 0.00 0.00 3.91
3338 10587 1.272092 CCTGCCTTGGTCTTTCCATGA 60.272 52.381 0.00 0.00 46.60 3.07
3650 10899 0.739813 CTGGAGTTAAAGGCCCGTCG 60.740 60.000 0.00 0.00 0.00 5.12
3681 10930 1.192146 TCTTTGACCAGACGGAGGGG 61.192 60.000 0.00 0.00 35.59 4.79
3722 10971 1.077625 CGGAGGGAGGGATAGGGAG 59.922 68.421 0.00 0.00 0.00 4.30
3740 10989 3.272334 GCCATCGACGCCATCACC 61.272 66.667 0.00 0.00 0.00 4.02
3790 11039 2.676471 GCATGGGGAAGGTTGCGT 60.676 61.111 0.00 0.00 0.00 5.24
3795 11044 2.610859 AGGTCGCATGGGGAAGGT 60.611 61.111 10.21 0.00 0.00 3.50
3810 11059 2.202797 CATCCGTGCGAGGTGAGG 60.203 66.667 0.00 0.00 0.00 3.86
3883 11132 3.382832 CGTCGGGGAAGGAGCTGT 61.383 66.667 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.