Multiple sequence alignment - TraesCS7A01G457600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G457600 chr7A 100.000 1445 0 0 937 2381 652729316 652727872 0.000000e+00 2669
1 TraesCS7A01G457600 chr7A 100.000 660 0 0 1 660 652730252 652729593 0.000000e+00 1219
2 TraesCS7A01G457600 chr7A 98.089 157 3 0 491 647 4784916 4784760 8.380000e-70 274
3 TraesCS7A01G457600 chr7B 88.774 775 59 13 1632 2381 620653536 620654307 0.000000e+00 924
4 TraesCS7A01G457600 chr7B 90.676 429 25 7 972 1388 620652820 620653245 7.430000e-155 556
5 TraesCS7A01G457600 chr7B 84.083 289 17 11 1418 1686 620653242 620653521 3.930000e-63 252
6 TraesCS7A01G457600 chr7D 84.974 945 73 35 971 1875 566559209 566558294 0.000000e+00 894
7 TraesCS7A01G457600 chr7D 95.455 484 22 0 1887 2370 566558311 566557828 0.000000e+00 773
8 TraesCS7A01G457600 chr7D 87.037 162 7 5 340 491 566559549 566559392 1.130000e-38 171
9 TraesCS7A01G457600 chr7D 91.753 97 4 1 226 322 488802488 488802396 5.340000e-27 132
10 TraesCS7A01G457600 chr7D 92.553 94 3 1 226 319 511939893 511939982 5.340000e-27 132
11 TraesCS7A01G457600 chr3B 98.077 156 3 0 491 646 790793288 790793133 3.020000e-69 272
12 TraesCS7A01G457600 chr2B 98.077 156 3 0 491 646 77779443 77779598 3.020000e-69 272
13 TraesCS7A01G457600 chr2B 98.065 155 2 1 491 645 128265204 128265357 3.900000e-68 268
14 TraesCS7A01G457600 chr2B 95.732 164 3 3 491 653 776250609 776250449 6.530000e-66 261
15 TraesCS7A01G457600 chr2B 92.553 94 3 2 226 319 664344843 664344932 5.340000e-27 132
16 TraesCS7A01G457600 chr4A 98.077 156 2 1 491 646 729868968 729869122 1.080000e-68 270
17 TraesCS7A01G457600 chr4A 96.835 158 5 0 491 648 731417420 731417263 5.050000e-67 265
18 TraesCS7A01G457600 chr1B 97.436 156 4 0 491 646 673633808 673633963 1.400000e-67 267
19 TraesCS7A01G457600 chr1B 90.351 114 9 1 1 112 142530260 142530373 5.300000e-32 148
20 TraesCS7A01G457600 chr2A 96.273 161 4 2 486 646 692706329 692706487 1.810000e-66 263
21 TraesCS7A01G457600 chr3D 92.982 114 6 1 1 112 7402060 7401947 5.270000e-37 165
22 TraesCS7A01G457600 chr3D 92.105 114 7 1 1 112 422944104 422943991 2.450000e-35 159
23 TraesCS7A01G457600 chr3D 92.105 114 7 1 1 112 429294296 429294409 2.450000e-35 159
24 TraesCS7A01G457600 chr3D 90.351 114 9 1 1 112 435709087 435709200 5.300000e-32 148
25 TraesCS7A01G457600 chr3D 90.351 114 9 1 1 112 467277125 467277012 5.300000e-32 148
26 TraesCS7A01G457600 chr3D 92.784 97 3 1 226 322 44879191 44879099 1.150000e-28 137
27 TraesCS7A01G457600 chr6D 92.105 114 7 1 1 112 38627274 38627387 2.450000e-35 159
28 TraesCS7A01G457600 chr6A 90.351 114 9 1 1 112 123461904 123462017 5.300000e-32 148
29 TraesCS7A01G457600 chr6A 75.862 261 38 16 1060 1303 109389328 109389580 2.500000e-20 110
30 TraesCS7A01G457600 chr4D 90.351 114 9 1 1 112 11876699 11876586 5.300000e-32 148
31 TraesCS7A01G457600 chr2D 91.753 97 4 1 226 322 586774028 586773936 5.340000e-27 132
32 TraesCS7A01G457600 chr1D 91.753 97 4 1 226 322 257424755 257424663 5.340000e-27 132
33 TraesCS7A01G457600 chr1D 91.753 97 4 1 226 322 433907852 433907760 5.340000e-27 132
34 TraesCS7A01G457600 chr1A 91.753 97 4 1 226 322 232089189 232089097 5.340000e-27 132
35 TraesCS7A01G457600 chr5D 91.489 94 4 1 226 319 487589724 487589813 2.480000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G457600 chr7A 652727872 652730252 2380 True 1944.000000 2669 100.000000 1 2381 2 chr7A.!!$R2 2380
1 TraesCS7A01G457600 chr7B 620652820 620654307 1487 False 577.333333 924 87.844333 972 2381 3 chr7B.!!$F1 1409
2 TraesCS7A01G457600 chr7D 566557828 566559549 1721 True 612.666667 894 89.155333 340 2370 3 chr7D.!!$R2 2030

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.032952 CTTGACCACGAGTTTCCGGA 59.967 55.0 0.0 0.0 0.0 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1468 1514 1.233019 CAGCAGTTGGTCTTCAGTGG 58.767 55.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.265739 TGCGTGATCAGGTCAGCC 59.734 61.111 16.27 0.71 37.56 4.85
28 29 2.665603 GTCAGCCTGGACCTGGAC 59.334 66.667 21.06 11.81 0.00 4.02
29 30 2.997315 TCAGCCTGGACCTGGACG 60.997 66.667 21.06 10.38 0.00 4.79
30 31 4.087892 CAGCCTGGACCTGGACGG 62.088 72.222 21.06 9.11 39.35 4.79
33 34 3.322466 CCTGGACCTGGACGGCTT 61.322 66.667 12.01 0.00 35.61 4.35
34 35 2.266055 CTGGACCTGGACGGCTTC 59.734 66.667 0.00 0.00 35.61 3.86
35 36 2.525629 TGGACCTGGACGGCTTCA 60.526 61.111 0.00 0.00 35.61 3.02
36 37 2.047179 GGACCTGGACGGCTTCAC 60.047 66.667 0.00 0.00 35.61 3.18
37 38 2.584391 GGACCTGGACGGCTTCACT 61.584 63.158 0.00 0.00 35.61 3.41
38 39 1.371558 GACCTGGACGGCTTCACTT 59.628 57.895 0.00 0.00 35.61 3.16
39 40 0.951040 GACCTGGACGGCTTCACTTG 60.951 60.000 0.00 0.00 35.61 3.16
40 41 1.371183 CCTGGACGGCTTCACTTGA 59.629 57.895 0.00 0.00 0.00 3.02
41 42 0.951040 CCTGGACGGCTTCACTTGAC 60.951 60.000 0.00 0.00 0.00 3.18
42 43 0.951040 CTGGACGGCTTCACTTGACC 60.951 60.000 0.00 0.00 0.00 4.02
43 44 1.070786 GGACGGCTTCACTTGACCA 59.929 57.895 0.00 0.00 0.00 4.02
44 45 1.228657 GGACGGCTTCACTTGACCAC 61.229 60.000 0.00 0.00 0.00 4.16
45 46 1.557443 GACGGCTTCACTTGACCACG 61.557 60.000 0.00 0.00 0.00 4.94
46 47 1.300620 CGGCTTCACTTGACCACGA 60.301 57.895 0.00 0.00 0.00 4.35
47 48 1.284982 CGGCTTCACTTGACCACGAG 61.285 60.000 0.00 0.00 0.00 4.18
48 49 0.249911 GGCTTCACTTGACCACGAGT 60.250 55.000 0.00 0.00 40.99 4.18
49 50 1.583054 GCTTCACTTGACCACGAGTT 58.417 50.000 0.00 0.00 38.56 3.01
50 51 1.940613 GCTTCACTTGACCACGAGTTT 59.059 47.619 0.00 0.00 38.56 2.66
51 52 2.032808 GCTTCACTTGACCACGAGTTTC 60.033 50.000 0.00 0.00 38.56 2.78
52 53 2.234300 TCACTTGACCACGAGTTTCC 57.766 50.000 0.00 0.00 38.56 3.13
53 54 0.859232 CACTTGACCACGAGTTTCCG 59.141 55.000 0.00 0.00 38.56 4.30
54 55 0.249741 ACTTGACCACGAGTTTCCGG 60.250 55.000 0.00 0.00 37.46 5.14
55 56 0.032952 CTTGACCACGAGTTTCCGGA 59.967 55.000 0.00 0.00 0.00 5.14
56 57 0.249573 TTGACCACGAGTTTCCGGAC 60.250 55.000 1.83 0.00 0.00 4.79
57 58 1.731969 GACCACGAGTTTCCGGACG 60.732 63.158 1.83 7.24 0.00 4.79
58 59 2.133742 GACCACGAGTTTCCGGACGA 62.134 60.000 17.93 0.65 0.00 4.20
59 60 1.731969 CCACGAGTTTCCGGACGAC 60.732 63.158 17.93 13.27 0.00 4.34
60 61 1.285023 CACGAGTTTCCGGACGACT 59.715 57.895 17.93 17.59 0.00 4.18
61 62 0.518636 CACGAGTTTCCGGACGACTA 59.481 55.000 17.93 0.00 0.00 2.59
62 63 0.519077 ACGAGTTTCCGGACGACTAC 59.481 55.000 17.93 11.15 0.00 2.73
63 64 0.519999 CGAGTTTCCGGACGACTACG 60.520 60.000 17.28 16.95 45.75 3.51
69 70 4.759564 CGGACGACTACGGACAAG 57.240 61.111 0.00 0.00 44.46 3.16
70 71 2.165380 CGGACGACTACGGACAAGA 58.835 57.895 0.00 0.00 44.46 3.02
71 72 0.096628 CGGACGACTACGGACAAGAG 59.903 60.000 0.00 0.00 44.46 2.85
72 73 1.446907 GGACGACTACGGACAAGAGA 58.553 55.000 0.00 0.00 44.46 3.10
73 74 1.808945 GGACGACTACGGACAAGAGAA 59.191 52.381 0.00 0.00 44.46 2.87
74 75 2.227388 GGACGACTACGGACAAGAGAAA 59.773 50.000 0.00 0.00 44.46 2.52
75 76 3.304928 GGACGACTACGGACAAGAGAAAA 60.305 47.826 0.00 0.00 44.46 2.29
76 77 4.293415 GACGACTACGGACAAGAGAAAAA 58.707 43.478 0.00 0.00 44.46 1.94
77 78 4.296690 ACGACTACGGACAAGAGAAAAAG 58.703 43.478 0.00 0.00 44.46 2.27
78 79 3.673809 CGACTACGGACAAGAGAAAAAGG 59.326 47.826 0.00 0.00 35.72 3.11
79 80 4.558095 CGACTACGGACAAGAGAAAAAGGA 60.558 45.833 0.00 0.00 35.72 3.36
80 81 4.629092 ACTACGGACAAGAGAAAAAGGAC 58.371 43.478 0.00 0.00 0.00 3.85
81 82 2.480845 ACGGACAAGAGAAAAAGGACG 58.519 47.619 0.00 0.00 0.00 4.79
82 83 2.101917 ACGGACAAGAGAAAAAGGACGA 59.898 45.455 0.00 0.00 0.00 4.20
83 84 2.731976 CGGACAAGAGAAAAAGGACGAG 59.268 50.000 0.00 0.00 0.00 4.18
84 85 3.729966 GGACAAGAGAAAAAGGACGAGT 58.270 45.455 0.00 0.00 0.00 4.18
85 86 3.495001 GGACAAGAGAAAAAGGACGAGTG 59.505 47.826 0.00 0.00 0.00 3.51
86 87 2.872858 ACAAGAGAAAAAGGACGAGTGC 59.127 45.455 0.00 0.00 0.00 4.40
87 88 1.784525 AGAGAAAAAGGACGAGTGCG 58.215 50.000 0.00 0.00 44.79 5.34
88 89 0.790814 GAGAAAAAGGACGAGTGCGG 59.209 55.000 0.00 0.00 43.17 5.69
96 97 2.507102 ACGAGTGCGGCATCGAAG 60.507 61.111 28.40 13.97 41.40 3.79
97 98 2.507102 CGAGTGCGGCATCGAAGT 60.507 61.111 21.81 0.00 41.40 3.01
98 99 2.792290 CGAGTGCGGCATCGAAGTG 61.792 63.158 21.81 0.00 41.40 3.16
99 100 1.446099 GAGTGCGGCATCGAAGTGA 60.446 57.895 5.72 0.00 39.00 3.41
100 101 1.005037 AGTGCGGCATCGAAGTGAA 60.005 52.632 5.72 0.00 39.00 3.18
101 102 1.016130 AGTGCGGCATCGAAGTGAAG 61.016 55.000 5.72 0.00 39.00 3.02
102 103 2.390599 TGCGGCATCGAAGTGAAGC 61.391 57.895 0.00 0.00 40.54 3.86
107 108 2.253392 GCATCGAAGTGAAGCCTTTG 57.747 50.000 0.00 0.00 35.28 2.77
108 109 1.537202 GCATCGAAGTGAAGCCTTTGT 59.463 47.619 0.00 0.00 35.28 2.83
109 110 2.030805 GCATCGAAGTGAAGCCTTTGTT 60.031 45.455 0.00 0.00 35.28 2.83
110 111 3.814945 CATCGAAGTGAAGCCTTTGTTC 58.185 45.455 0.00 0.00 0.00 3.18
111 112 1.864711 TCGAAGTGAAGCCTTTGTTCG 59.135 47.619 9.30 9.30 38.46 3.95
112 113 1.069906 CGAAGTGAAGCCTTTGTTCGG 60.070 52.381 8.20 0.00 34.57 4.30
113 114 1.266989 GAAGTGAAGCCTTTGTTCGGG 59.733 52.381 0.00 0.00 0.00 5.14
114 115 0.182775 AGTGAAGCCTTTGTTCGGGT 59.817 50.000 0.00 0.00 0.00 5.28
115 116 0.591659 GTGAAGCCTTTGTTCGGGTC 59.408 55.000 0.00 0.00 0.00 4.46
116 117 0.536460 TGAAGCCTTTGTTCGGGTCC 60.536 55.000 0.00 0.00 0.00 4.46
117 118 1.228459 AAGCCTTTGTTCGGGTCCC 60.228 57.895 0.00 0.00 0.00 4.46
118 119 2.002018 AAGCCTTTGTTCGGGTCCCA 62.002 55.000 9.12 0.00 0.00 4.37
119 120 2.265904 GCCTTTGTTCGGGTCCCAC 61.266 63.158 9.12 0.00 0.00 4.61
120 121 1.602605 CCTTTGTTCGGGTCCCACC 60.603 63.158 9.12 0.00 37.60 4.61
130 131 2.436521 GGTCCCACCCCTTTTTGTG 58.563 57.895 0.00 0.00 30.04 3.33
133 134 4.293610 CCACCCCTTTTTGTGGCT 57.706 55.556 0.00 0.00 44.98 4.75
134 135 1.747774 CCACCCCTTTTTGTGGCTG 59.252 57.895 0.00 0.00 44.98 4.85
135 136 1.747774 CACCCCTTTTTGTGGCTGG 59.252 57.895 0.00 0.00 0.00 4.85
136 137 2.140138 ACCCCTTTTTGTGGCTGGC 61.140 57.895 0.00 0.00 0.00 4.85
137 138 2.139484 CCCCTTTTTGTGGCTGGCA 61.139 57.895 0.00 0.00 0.00 4.92
138 139 1.482748 CCCCTTTTTGTGGCTGGCAT 61.483 55.000 7.33 0.00 0.00 4.40
139 140 0.320946 CCCTTTTTGTGGCTGGCATG 60.321 55.000 7.33 0.00 0.00 4.06
140 141 0.393820 CCTTTTTGTGGCTGGCATGT 59.606 50.000 7.33 0.00 0.00 3.21
141 142 1.504359 CTTTTTGTGGCTGGCATGTG 58.496 50.000 7.33 0.00 0.00 3.21
142 143 0.829333 TTTTTGTGGCTGGCATGTGT 59.171 45.000 7.33 0.00 0.00 3.72
143 144 0.104487 TTTTGTGGCTGGCATGTGTG 59.896 50.000 7.33 0.00 0.00 3.82
171 172 3.252964 CGAGTGCGCCAACATGAA 58.747 55.556 4.18 0.00 0.00 2.57
172 173 1.154413 CGAGTGCGCCAACATGAAC 60.154 57.895 4.18 0.00 0.00 3.18
173 174 1.568612 CGAGTGCGCCAACATGAACT 61.569 55.000 4.18 0.00 0.00 3.01
174 175 0.110056 GAGTGCGCCAACATGAACTG 60.110 55.000 4.18 0.00 0.00 3.16
175 176 0.534877 AGTGCGCCAACATGAACTGA 60.535 50.000 4.18 0.00 0.00 3.41
176 177 0.310543 GTGCGCCAACATGAACTGAA 59.689 50.000 4.18 0.00 0.00 3.02
177 178 0.310543 TGCGCCAACATGAACTGAAC 59.689 50.000 4.18 0.00 0.00 3.18
178 179 0.593128 GCGCCAACATGAACTGAACT 59.407 50.000 0.00 0.00 0.00 3.01
179 180 1.664016 GCGCCAACATGAACTGAACTG 60.664 52.381 0.00 0.00 0.00 3.16
180 181 1.664016 CGCCAACATGAACTGAACTGC 60.664 52.381 0.00 0.00 0.00 4.40
181 182 1.664016 GCCAACATGAACTGAACTGCG 60.664 52.381 0.00 0.00 0.00 5.18
182 183 1.069022 CCAACATGAACTGAACTGCGG 60.069 52.381 0.00 0.00 0.00 5.69
183 184 1.603802 CAACATGAACTGAACTGCGGT 59.396 47.619 0.00 0.00 37.85 5.68
184 185 1.229428 ACATGAACTGAACTGCGGTG 58.771 50.000 0.00 0.00 35.88 4.94
185 186 1.202639 ACATGAACTGAACTGCGGTGA 60.203 47.619 0.00 0.00 35.88 4.02
186 187 2.079158 CATGAACTGAACTGCGGTGAT 58.921 47.619 0.00 0.00 35.88 3.06
187 188 2.254546 TGAACTGAACTGCGGTGATT 57.745 45.000 0.00 0.00 35.88 2.57
188 189 2.571212 TGAACTGAACTGCGGTGATTT 58.429 42.857 0.00 0.00 35.88 2.17
189 190 2.948979 TGAACTGAACTGCGGTGATTTT 59.051 40.909 0.00 0.00 35.88 1.82
190 191 3.380004 TGAACTGAACTGCGGTGATTTTT 59.620 39.130 0.00 0.00 35.88 1.94
215 216 9.666626 TTTTTAAAACTACAATGTATGTCGGTG 57.333 29.630 0.00 0.00 42.70 4.94
216 217 7.966246 TTAAAACTACAATGTATGTCGGTGT 57.034 32.000 0.00 0.00 42.70 4.16
217 218 6.870971 AAAACTACAATGTATGTCGGTGTT 57.129 33.333 0.00 0.00 42.70 3.32
218 219 5.856126 AACTACAATGTATGTCGGTGTTG 57.144 39.130 0.00 0.00 42.70 3.33
219 220 5.142061 ACTACAATGTATGTCGGTGTTGA 57.858 39.130 0.00 0.00 42.70 3.18
220 221 4.927425 ACTACAATGTATGTCGGTGTTGAC 59.073 41.667 0.00 0.00 42.70 3.18
226 227 2.999356 TGTCGGTGTTGACATGGTG 58.001 52.632 0.00 0.00 43.62 4.17
227 228 1.163420 TGTCGGTGTTGACATGGTGC 61.163 55.000 0.00 0.00 43.62 5.01
228 229 1.958715 TCGGTGTTGACATGGTGCG 60.959 57.895 0.00 0.00 0.00 5.34
229 230 2.953821 GGTGTTGACATGGTGCGG 59.046 61.111 0.00 0.00 0.00 5.69
230 231 1.599518 GGTGTTGACATGGTGCGGA 60.600 57.895 0.00 0.00 0.00 5.54
231 232 1.574428 GTGTTGACATGGTGCGGAC 59.426 57.895 0.00 0.00 0.00 4.79
232 233 1.147153 TGTTGACATGGTGCGGACA 59.853 52.632 9.96 0.00 0.00 4.02
233 234 0.250684 TGTTGACATGGTGCGGACAT 60.251 50.000 9.96 0.00 0.00 3.06
235 236 0.036022 TTGACATGGTGCGGACATGA 59.964 50.000 20.21 1.55 46.60 3.07
236 237 0.036022 TGACATGGTGCGGACATGAA 59.964 50.000 20.21 9.52 46.60 2.57
237 238 1.164411 GACATGGTGCGGACATGAAA 58.836 50.000 20.21 0.00 46.60 2.69
238 239 1.745087 GACATGGTGCGGACATGAAAT 59.255 47.619 20.21 4.44 46.60 2.17
248 249 2.408835 CATGAAATGGGTCGGCGC 59.591 61.111 0.00 0.00 41.79 6.53
249 250 3.202001 ATGAAATGGGTCGGCGCG 61.202 61.111 0.00 0.00 0.00 6.86
250 251 3.969250 ATGAAATGGGTCGGCGCGT 62.969 57.895 8.43 0.00 0.00 6.01
251 252 3.428282 GAAATGGGTCGGCGCGTT 61.428 61.111 8.43 5.61 38.23 4.84
252 253 3.661025 GAAATGGGTCGGCGCGTTG 62.661 63.158 12.62 0.00 36.96 4.10
265 266 4.728102 CGTTGGGCGCACTACCGA 62.728 66.667 18.45 2.20 0.00 4.69
266 267 3.116531 GTTGGGCGCACTACCGAC 61.117 66.667 13.55 8.96 34.22 4.79
270 271 4.382320 GGCGCACTACCGACCCAA 62.382 66.667 10.83 0.00 0.00 4.12
271 272 2.357760 GCGCACTACCGACCCAAA 60.358 61.111 0.30 0.00 0.00 3.28
272 273 1.743995 GCGCACTACCGACCCAAAT 60.744 57.895 0.30 0.00 0.00 2.32
273 274 1.977594 GCGCACTACCGACCCAAATG 61.978 60.000 0.30 0.00 0.00 2.32
274 275 1.800681 GCACTACCGACCCAAATGC 59.199 57.895 0.00 0.00 0.00 3.56
275 276 0.958382 GCACTACCGACCCAAATGCA 60.958 55.000 0.00 0.00 0.00 3.96
276 277 1.086696 CACTACCGACCCAAATGCAG 58.913 55.000 0.00 0.00 0.00 4.41
277 278 0.981183 ACTACCGACCCAAATGCAGA 59.019 50.000 0.00 0.00 0.00 4.26
278 279 1.349688 ACTACCGACCCAAATGCAGAA 59.650 47.619 0.00 0.00 0.00 3.02
279 280 1.737793 CTACCGACCCAAATGCAGAAC 59.262 52.381 0.00 0.00 0.00 3.01
280 281 0.110486 ACCGACCCAAATGCAGAACT 59.890 50.000 0.00 0.00 0.00 3.01
281 282 0.523072 CCGACCCAAATGCAGAACTG 59.477 55.000 0.00 0.00 0.00 3.16
282 283 0.523072 CGACCCAAATGCAGAACTGG 59.477 55.000 3.99 0.00 0.00 4.00
284 285 1.593265 CCCAAATGCAGAACTGGGC 59.407 57.895 11.10 0.00 42.10 5.36
285 286 1.213537 CCAAATGCAGAACTGGGCG 59.786 57.895 3.99 0.00 0.00 6.13
286 287 1.213537 CAAATGCAGAACTGGGCGG 59.786 57.895 3.99 0.00 0.00 6.13
287 288 1.074775 AAATGCAGAACTGGGCGGA 59.925 52.632 3.99 0.00 0.00 5.54
288 289 0.539438 AAATGCAGAACTGGGCGGAA 60.539 50.000 3.99 0.00 0.00 4.30
289 290 0.962356 AATGCAGAACTGGGCGGAAG 60.962 55.000 3.99 0.00 0.00 3.46
328 329 3.591835 CCAAACGGGCAGTGCGTT 61.592 61.111 9.45 5.77 0.00 4.84
329 330 2.353376 CAAACGGGCAGTGCGTTG 60.353 61.111 9.45 7.01 0.00 4.10
330 331 3.591835 AAACGGGCAGTGCGTTGG 61.592 61.111 9.45 0.32 0.00 3.77
331 332 4.555709 AACGGGCAGTGCGTTGGA 62.556 61.111 9.45 0.00 0.00 3.53
332 333 4.988598 ACGGGCAGTGCGTTGGAG 62.989 66.667 9.45 0.00 0.00 3.86
333 334 4.988598 CGGGCAGTGCGTTGGAGT 62.989 66.667 9.45 0.00 0.00 3.85
334 335 2.594592 GGGCAGTGCGTTGGAGTT 60.595 61.111 9.45 0.00 0.00 3.01
335 336 2.639286 GGCAGTGCGTTGGAGTTG 59.361 61.111 9.45 0.00 0.00 3.16
336 337 2.050985 GCAGTGCGTTGGAGTTGC 60.051 61.111 0.00 0.00 0.00 4.17
337 338 2.546494 GCAGTGCGTTGGAGTTGCT 61.546 57.895 0.00 0.00 0.00 3.91
338 339 1.571460 CAGTGCGTTGGAGTTGCTC 59.429 57.895 0.00 0.00 0.00 4.26
342 343 2.076863 GTGCGTTGGAGTTGCTCTTAT 58.923 47.619 0.00 0.00 0.00 1.73
350 351 3.447229 TGGAGTTGCTCTTATCACGATCA 59.553 43.478 0.00 0.00 0.00 2.92
351 352 3.799420 GGAGTTGCTCTTATCACGATCAC 59.201 47.826 0.00 0.00 0.00 3.06
354 355 6.208988 AGTTGCTCTTATCACGATCACTTA 57.791 37.500 0.00 0.00 0.00 2.24
411 412 2.613691 CCTAATTTCAGGCGTACACGT 58.386 47.619 3.44 0.00 42.22 4.49
501 512 3.118454 CCAAGTGCGCCTACGGTG 61.118 66.667 4.18 1.26 40.57 4.94
502 513 2.048597 CAAGTGCGCCTACGGTGA 60.049 61.111 4.18 0.00 40.57 4.02
506 517 2.092882 GTGCGCCTACGGTGACTTC 61.093 63.158 4.18 0.00 40.57 3.01
507 518 2.879462 GCGCCTACGGTGACTTCG 60.879 66.667 0.00 0.00 40.57 3.79
508 519 2.564975 CGCCTACGGTGACTTCGT 59.435 61.111 0.00 0.00 43.64 3.85
510 521 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
511 522 1.401409 CGCCTACGGTGACTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
513 524 2.856557 GCCTACGGTGACTTCGTAAATC 59.143 50.000 0.00 0.00 41.62 2.17
514 525 3.428589 GCCTACGGTGACTTCGTAAATCT 60.429 47.826 0.00 0.00 41.62 2.40
517 528 4.247267 ACGGTGACTTCGTAAATCTCAA 57.753 40.909 0.00 0.00 39.22 3.02
518 529 4.235360 ACGGTGACTTCGTAAATCTCAAG 58.765 43.478 0.00 0.00 39.22 3.02
519 530 4.022589 ACGGTGACTTCGTAAATCTCAAGA 60.023 41.667 0.00 0.00 39.22 3.02
520 531 5.103000 CGGTGACTTCGTAAATCTCAAGAT 58.897 41.667 0.00 0.00 36.07 2.40
522 533 6.100004 GGTGACTTCGTAAATCTCAAGATGA 58.900 40.000 0.00 0.00 34.49 2.92
523 534 6.758886 GGTGACTTCGTAAATCTCAAGATGAT 59.241 38.462 0.00 0.00 34.49 2.45
525 536 9.469807 GTGACTTCGTAAATCTCAAGATGATAT 57.530 33.333 0.00 0.00 34.49 1.63
526 537 9.468532 TGACTTCGTAAATCTCAAGATGATATG 57.531 33.333 0.00 0.00 34.49 1.78
527 538 9.469807 GACTTCGTAAATCTCAAGATGATATGT 57.530 33.333 0.00 0.00 34.49 2.29
529 540 8.507470 TTCGTAAATCTCAAGATGATATGTCG 57.493 34.615 0.00 0.00 34.49 4.35
530 541 7.084486 TCGTAAATCTCAAGATGATATGTCGG 58.916 38.462 0.00 0.00 34.49 4.79
532 543 5.480642 AATCTCAAGATGATATGTCGGCT 57.519 39.130 0.00 0.00 34.49 5.52
533 544 4.511617 TCTCAAGATGATATGTCGGCTC 57.488 45.455 0.00 0.00 0.00 4.70
534 545 3.891366 TCTCAAGATGATATGTCGGCTCA 59.109 43.478 0.00 0.00 0.00 4.26
535 546 4.022503 TCTCAAGATGATATGTCGGCTCAG 60.023 45.833 0.00 0.00 0.00 3.35
536 547 3.638627 TCAAGATGATATGTCGGCTCAGT 59.361 43.478 0.00 0.00 0.00 3.41
537 548 3.932545 AGATGATATGTCGGCTCAGTC 57.067 47.619 0.00 0.00 0.00 3.51
538 549 3.495331 AGATGATATGTCGGCTCAGTCT 58.505 45.455 0.00 0.00 0.00 3.24
540 551 2.654863 TGATATGTCGGCTCAGTCTCA 58.345 47.619 0.00 0.00 0.00 3.27
541 552 2.359214 TGATATGTCGGCTCAGTCTCAC 59.641 50.000 0.00 0.00 0.00 3.51
542 553 0.733150 TATGTCGGCTCAGTCTCACG 59.267 55.000 0.00 0.00 0.00 4.35
543 554 1.938657 ATGTCGGCTCAGTCTCACGG 61.939 60.000 0.00 0.00 0.00 4.94
544 555 2.033602 TCGGCTCAGTCTCACGGA 59.966 61.111 0.00 0.00 0.00 4.69
545 556 2.041115 TCGGCTCAGTCTCACGGAG 61.041 63.158 0.00 0.00 42.19 4.63
546 557 2.888863 GGCTCAGTCTCACGGAGG 59.111 66.667 6.04 0.00 40.14 4.30
547 558 1.979693 GGCTCAGTCTCACGGAGGT 60.980 63.158 6.04 0.00 40.14 3.85
548 559 1.214062 GCTCAGTCTCACGGAGGTG 59.786 63.158 6.04 0.00 45.78 4.00
549 560 1.214062 CTCAGTCTCACGGAGGTGC 59.786 63.158 1.76 0.00 44.03 5.01
552 563 1.228583 AGTCTCACGGAGGTGCTCA 60.229 57.895 1.76 0.00 44.03 4.26
553 564 0.613292 AGTCTCACGGAGGTGCTCAT 60.613 55.000 1.76 0.00 44.03 2.90
554 565 1.103803 GTCTCACGGAGGTGCTCATA 58.896 55.000 1.76 0.00 44.03 2.15
555 566 1.066303 GTCTCACGGAGGTGCTCATAG 59.934 57.143 1.76 0.00 44.03 2.23
556 567 0.387202 CTCACGGAGGTGCTCATAGG 59.613 60.000 0.00 0.00 44.03 2.57
557 568 1.043116 TCACGGAGGTGCTCATAGGG 61.043 60.000 0.00 0.00 44.03 3.53
558 569 1.762460 ACGGAGGTGCTCATAGGGG 60.762 63.158 0.00 0.00 31.08 4.79
560 571 0.469331 CGGAGGTGCTCATAGGGGTA 60.469 60.000 0.00 0.00 31.08 3.69
561 572 1.343069 GGAGGTGCTCATAGGGGTAG 58.657 60.000 0.00 0.00 31.08 3.18
562 573 1.343069 GAGGTGCTCATAGGGGTAGG 58.657 60.000 0.00 0.00 0.00 3.18
563 574 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
565 576 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
566 577 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
567 578 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
570 581 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
571 582 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
572 583 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
573 584 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
574 585 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
575 586 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
576 587 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
579 590 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
581 592 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
583 594 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
584 595 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
585 596 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
586 597 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
587 598 0.389296 CGTGTGTGCGTTCATAGGGA 60.389 55.000 0.00 0.00 0.00 4.20
588 599 1.739035 CGTGTGTGCGTTCATAGGGAT 60.739 52.381 0.00 0.00 0.00 3.85
589 600 1.665679 GTGTGTGCGTTCATAGGGATG 59.334 52.381 0.00 0.00 0.00 3.51
591 602 2.205074 GTGTGCGTTCATAGGGATGAG 58.795 52.381 0.00 0.00 43.03 2.90
592 603 1.831106 TGTGCGTTCATAGGGATGAGT 59.169 47.619 0.00 0.00 43.03 3.41
593 604 2.205074 GTGCGTTCATAGGGATGAGTG 58.795 52.381 0.00 0.00 43.03 3.51
594 605 1.831106 TGCGTTCATAGGGATGAGTGT 59.169 47.619 0.00 0.00 43.03 3.55
596 607 3.641436 TGCGTTCATAGGGATGAGTGTAT 59.359 43.478 0.00 0.00 43.03 2.29
597 608 3.990469 GCGTTCATAGGGATGAGTGTATG 59.010 47.826 0.00 0.00 43.03 2.39
598 609 3.990469 CGTTCATAGGGATGAGTGTATGC 59.010 47.826 0.00 0.00 43.03 3.14
599 610 3.942130 TCATAGGGATGAGTGTATGCG 57.058 47.619 0.00 0.00 37.15 4.73
600 611 2.029020 TCATAGGGATGAGTGTATGCGC 60.029 50.000 0.00 0.00 37.15 6.09
601 612 0.313987 TAGGGATGAGTGTATGCGCG 59.686 55.000 0.00 0.00 0.00 6.86
602 613 1.227263 GGGATGAGTGTATGCGCGT 60.227 57.895 8.43 7.55 0.00 6.01
603 614 1.490693 GGGATGAGTGTATGCGCGTG 61.491 60.000 13.61 0.00 0.00 5.34
604 615 0.806102 GGATGAGTGTATGCGCGTGT 60.806 55.000 13.61 0.00 0.00 4.49
605 616 1.535226 GGATGAGTGTATGCGCGTGTA 60.535 52.381 13.61 0.00 0.00 2.90
606 617 2.394708 GATGAGTGTATGCGCGTGTAT 58.605 47.619 13.61 4.63 0.00 2.29
607 618 3.561503 GATGAGTGTATGCGCGTGTATA 58.438 45.455 13.61 2.40 0.00 1.47
608 619 3.636282 TGAGTGTATGCGCGTGTATAT 57.364 42.857 13.61 0.00 0.00 0.86
609 620 3.305110 TGAGTGTATGCGCGTGTATATG 58.695 45.455 13.61 0.00 0.00 1.78
610 621 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
611 622 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
612 623 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
615 626 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
616 627 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
617 628 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
618 629 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
619 630 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
620 631 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
622 633 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
623 634 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
625 636 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
626 637 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
627 638 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
628 639 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
629 640 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
631 642 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
632 643 1.391485 CGCTTGTGTCTGTACTGATGC 59.609 52.381 5.69 3.20 0.00 3.91
633 644 2.693069 GCTTGTGTCTGTACTGATGCT 58.307 47.619 5.69 0.00 0.00 3.79
635 646 3.862264 GCTTGTGTCTGTACTGATGCTCA 60.862 47.826 5.69 0.00 0.00 4.26
636 647 4.309933 CTTGTGTCTGTACTGATGCTCAA 58.690 43.478 5.69 6.69 0.00 3.02
637 648 4.335400 TGTGTCTGTACTGATGCTCAAA 57.665 40.909 5.69 0.00 0.00 2.69
638 649 4.702831 TGTGTCTGTACTGATGCTCAAAA 58.297 39.130 5.69 0.00 0.00 2.44
639 650 4.751600 TGTGTCTGTACTGATGCTCAAAAG 59.248 41.667 5.69 0.00 0.00 2.27
640 651 4.991056 GTGTCTGTACTGATGCTCAAAAGA 59.009 41.667 5.69 0.00 0.00 2.52
641 652 5.466728 GTGTCTGTACTGATGCTCAAAAGAA 59.533 40.000 5.69 0.00 0.00 2.52
642 653 6.017934 GTGTCTGTACTGATGCTCAAAAGAAA 60.018 38.462 5.69 0.00 0.00 2.52
643 654 6.542005 TGTCTGTACTGATGCTCAAAAGAAAA 59.458 34.615 5.69 0.00 0.00 2.29
644 655 7.066887 TGTCTGTACTGATGCTCAAAAGAAAAA 59.933 33.333 5.69 0.00 0.00 1.94
645 656 7.589221 GTCTGTACTGATGCTCAAAAGAAAAAG 59.411 37.037 5.69 0.00 0.00 2.27
648 659 5.045872 ACTGATGCTCAAAAGAAAAAGCAC 58.954 37.500 0.00 0.00 46.57 4.40
649 660 5.163478 ACTGATGCTCAAAAGAAAAAGCACT 60.163 36.000 0.00 0.00 46.57 4.40
650 661 5.045215 TGATGCTCAAAAGAAAAAGCACTG 58.955 37.500 0.00 0.00 46.57 3.66
651 662 3.784338 TGCTCAAAAGAAAAAGCACTGG 58.216 40.909 0.00 0.00 39.69 4.00
652 663 2.541346 GCTCAAAAGAAAAAGCACTGGC 59.459 45.455 0.00 0.00 41.61 4.85
653 664 3.126073 CTCAAAAGAAAAAGCACTGGCC 58.874 45.455 0.00 0.00 42.56 5.36
654 665 2.499289 TCAAAAGAAAAAGCACTGGCCA 59.501 40.909 4.71 4.71 42.56 5.36
655 666 3.055530 TCAAAAGAAAAAGCACTGGCCAA 60.056 39.130 7.01 0.00 42.56 4.52
656 667 2.896745 AAGAAAAAGCACTGGCCAAG 57.103 45.000 7.01 3.21 42.56 3.61
657 668 1.780503 AGAAAAAGCACTGGCCAAGT 58.219 45.000 7.01 4.22 42.56 3.16
1218 1255 4.090057 GCCGTGCCGCACTTCTTC 62.090 66.667 20.87 2.36 31.34 2.87
1219 1256 2.357517 CCGTGCCGCACTTCTTCT 60.358 61.111 20.87 0.00 31.34 2.85
1220 1257 1.961277 CCGTGCCGCACTTCTTCTT 60.961 57.895 20.87 0.00 31.34 2.52
1394 1439 4.301027 CTGATAGGCCGGCCGGTC 62.301 72.222 41.56 41.56 41.95 4.79
1407 1452 4.778415 CGGTCGACTCCTGTGCCG 62.778 72.222 16.46 3.78 0.00 5.69
1532 1591 7.426929 TCTGTGTAGATGCTTCTTTCTTTTC 57.573 36.000 7.51 0.00 33.17 2.29
1661 1726 7.767659 TGTGGTCTTGATCTCTGAATAATCTTG 59.232 37.037 0.00 0.00 0.00 3.02
1669 1734 9.049523 TGATCTCTGAATAATCTTGTGTAATGC 57.950 33.333 0.00 0.00 0.00 3.56
1673 1738 7.988737 TCTGAATAATCTTGTGTAATGCTTGG 58.011 34.615 0.00 0.00 0.00 3.61
1677 1742 5.841957 AATCTTGTGTAATGCTTGGATCC 57.158 39.130 4.20 4.20 0.00 3.36
1723 1856 2.358957 TGCTCCATCAAGCATGTGTAC 58.641 47.619 0.00 0.00 47.00 2.90
1724 1857 1.672881 GCTCCATCAAGCATGTGTACC 59.327 52.381 0.00 0.00 42.05 3.34
1725 1858 2.940971 GCTCCATCAAGCATGTGTACCA 60.941 50.000 0.00 0.00 42.05 3.25
1831 1984 2.067013 CGTGCTCCTGATATGATGCAG 58.933 52.381 0.00 0.00 0.00 4.41
1838 1991 3.135167 TCCTGATATGATGCAGCTGTTCA 59.865 43.478 16.64 18.30 0.00 3.18
1849 2002 3.631686 TGCAGCTGTTCATTTGTTACACT 59.368 39.130 16.64 0.00 0.00 3.55
1850 2003 4.097741 TGCAGCTGTTCATTTGTTACACTT 59.902 37.500 16.64 0.00 0.00 3.16
1855 2008 6.033341 GCTGTTCATTTGTTACACTTCACAA 58.967 36.000 0.00 0.00 0.00 3.33
1856 2009 6.529829 GCTGTTCATTTGTTACACTTCACAAA 59.470 34.615 0.27 0.27 44.78 2.83
1860 2013 9.900264 GTTCATTTGTTACACTTCACAAAATTC 57.100 29.630 1.86 0.00 44.08 2.17
1870 2023 4.962362 ACTTCACAAAATTCCTTCCCTTGT 59.038 37.500 0.00 0.00 0.00 3.16
1871 2024 5.425217 ACTTCACAAAATTCCTTCCCTTGTT 59.575 36.000 0.00 0.00 0.00 2.83
1872 2025 5.948742 TCACAAAATTCCTTCCCTTGTTT 57.051 34.783 0.00 0.00 0.00 2.83
1874 2027 6.716284 TCACAAAATTCCTTCCCTTGTTTTT 58.284 32.000 0.00 0.00 0.00 1.94
1875 2028 6.821160 TCACAAAATTCCTTCCCTTGTTTTTC 59.179 34.615 0.00 0.00 0.00 2.29
1876 2029 6.823182 CACAAAATTCCTTCCCTTGTTTTTCT 59.177 34.615 0.00 0.00 0.00 2.52
1879 2032 8.397906 CAAAATTCCTTCCCTTGTTTTTCTTTC 58.602 33.333 0.00 0.00 0.00 2.62
1881 2034 5.852282 TCCTTCCCTTGTTTTTCTTTCTG 57.148 39.130 0.00 0.00 0.00 3.02
1929 2087 5.001232 ACAACCACTGATACATACAACACC 58.999 41.667 0.00 0.00 0.00 4.16
1949 2107 1.827969 CCCAAAACAACACAAGGACCA 59.172 47.619 0.00 0.00 0.00 4.02
1955 2113 2.426522 ACAACACAAGGACCATCATCG 58.573 47.619 0.00 0.00 0.00 3.84
2109 2267 2.505405 CTCTCCACATACGCTAGCCTA 58.495 52.381 9.66 2.05 0.00 3.93
2166 2324 3.243816 TGAGGTGGAGCAGCAGCA 61.244 61.111 3.17 0.00 45.49 4.41
2202 2360 1.540146 GCAGAAACCGCCCATGTTTTT 60.540 47.619 0.00 0.00 36.13 1.94
2211 2369 3.131933 CCGCCCATGTTTTTGGATCAATA 59.868 43.478 0.00 0.00 39.25 1.90
2217 2375 7.212274 CCCATGTTTTTGGATCAATATCTTCC 58.788 38.462 0.00 0.00 39.25 3.46
2240 2398 2.698797 CCACGGAATGGTCTAGTGGTAT 59.301 50.000 4.89 0.00 44.46 2.73
2322 2480 3.508762 GTTGACGATAACACGAGGACAT 58.491 45.455 0.00 0.00 37.03 3.06
2370 2528 9.810545 GAGTTATCATCTATCTTGGGCTATAAC 57.189 37.037 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.265739 GGCTGACCTGATCACGCA 59.734 61.111 0.00 0.00 34.80 5.24
11 12 2.665603 GTCCAGGTCCAGGCTGAC 59.334 66.667 17.94 11.98 34.42 3.51
12 13 2.997315 CGTCCAGGTCCAGGCTGA 60.997 66.667 17.94 0.00 0.00 4.26
13 14 4.087892 CCGTCCAGGTCCAGGCTG 62.088 72.222 7.75 7.75 34.51 4.85
16 17 3.316573 GAAGCCGTCCAGGTCCAGG 62.317 68.421 0.00 0.00 43.70 4.45
17 18 2.266055 GAAGCCGTCCAGGTCCAG 59.734 66.667 0.00 0.00 43.70 3.86
18 19 2.525629 TGAAGCCGTCCAGGTCCA 60.526 61.111 0.00 0.00 43.70 4.02
19 20 2.047179 GTGAAGCCGTCCAGGTCC 60.047 66.667 0.00 0.00 43.70 4.46
20 21 0.951040 CAAGTGAAGCCGTCCAGGTC 60.951 60.000 0.00 0.00 43.70 3.85
21 22 1.071471 CAAGTGAAGCCGTCCAGGT 59.929 57.895 0.00 0.00 43.70 4.00
22 23 0.951040 GTCAAGTGAAGCCGTCCAGG 60.951 60.000 0.00 0.00 44.97 4.45
23 24 0.951040 GGTCAAGTGAAGCCGTCCAG 60.951 60.000 0.00 0.00 0.00 3.86
24 25 1.070786 GGTCAAGTGAAGCCGTCCA 59.929 57.895 0.00 0.00 0.00 4.02
25 26 1.070786 TGGTCAAGTGAAGCCGTCC 59.929 57.895 0.00 0.00 0.00 4.79
26 27 1.557443 CGTGGTCAAGTGAAGCCGTC 61.557 60.000 0.00 0.00 0.00 4.79
27 28 1.594293 CGTGGTCAAGTGAAGCCGT 60.594 57.895 0.00 0.00 0.00 5.68
28 29 1.284982 CTCGTGGTCAAGTGAAGCCG 61.285 60.000 0.00 0.00 0.00 5.52
29 30 0.249911 ACTCGTGGTCAAGTGAAGCC 60.250 55.000 0.00 0.00 0.00 4.35
30 31 1.583054 AACTCGTGGTCAAGTGAAGC 58.417 50.000 0.00 0.00 0.00 3.86
31 32 2.544267 GGAAACTCGTGGTCAAGTGAAG 59.456 50.000 0.00 0.00 0.00 3.02
32 33 2.557317 GGAAACTCGTGGTCAAGTGAA 58.443 47.619 0.00 0.00 0.00 3.18
33 34 1.537348 CGGAAACTCGTGGTCAAGTGA 60.537 52.381 0.00 0.00 0.00 3.41
34 35 0.859232 CGGAAACTCGTGGTCAAGTG 59.141 55.000 0.00 0.00 0.00 3.16
35 36 0.249741 CCGGAAACTCGTGGTCAAGT 60.250 55.000 0.00 0.00 0.00 3.16
36 37 0.032952 TCCGGAAACTCGTGGTCAAG 59.967 55.000 0.00 0.00 0.00 3.02
37 38 0.249573 GTCCGGAAACTCGTGGTCAA 60.250 55.000 5.23 0.00 0.00 3.18
38 39 1.364901 GTCCGGAAACTCGTGGTCA 59.635 57.895 5.23 0.00 0.00 4.02
39 40 1.731969 CGTCCGGAAACTCGTGGTC 60.732 63.158 5.23 0.00 0.00 4.02
40 41 2.195567 TCGTCCGGAAACTCGTGGT 61.196 57.895 5.23 0.00 0.00 4.16
41 42 1.731969 GTCGTCCGGAAACTCGTGG 60.732 63.158 5.23 0.00 0.00 4.94
42 43 0.518636 TAGTCGTCCGGAAACTCGTG 59.481 55.000 20.83 0.35 0.00 4.35
43 44 0.519077 GTAGTCGTCCGGAAACTCGT 59.481 55.000 20.83 2.84 0.00 4.18
44 45 0.519999 CGTAGTCGTCCGGAAACTCG 60.520 60.000 20.83 18.76 0.00 4.18
45 46 3.302968 CGTAGTCGTCCGGAAACTC 57.697 57.895 20.83 13.03 0.00 3.01
51 52 1.136147 CTTGTCCGTAGTCGTCCGG 59.864 63.158 0.00 0.00 45.55 5.14
52 53 0.096628 CTCTTGTCCGTAGTCGTCCG 59.903 60.000 0.00 0.00 35.01 4.79
53 54 1.446907 TCTCTTGTCCGTAGTCGTCC 58.553 55.000 0.00 0.00 35.01 4.79
54 55 3.549299 TTTCTCTTGTCCGTAGTCGTC 57.451 47.619 0.00 0.00 35.01 4.20
55 56 3.996150 TTTTCTCTTGTCCGTAGTCGT 57.004 42.857 0.00 0.00 35.01 4.34
56 57 3.673809 CCTTTTTCTCTTGTCCGTAGTCG 59.326 47.826 0.00 0.00 0.00 4.18
57 58 4.685165 GTCCTTTTTCTCTTGTCCGTAGTC 59.315 45.833 0.00 0.00 0.00 2.59
58 59 4.629092 GTCCTTTTTCTCTTGTCCGTAGT 58.371 43.478 0.00 0.00 0.00 2.73
59 60 3.673809 CGTCCTTTTTCTCTTGTCCGTAG 59.326 47.826 0.00 0.00 0.00 3.51
60 61 3.318839 TCGTCCTTTTTCTCTTGTCCGTA 59.681 43.478 0.00 0.00 0.00 4.02
61 62 2.101917 TCGTCCTTTTTCTCTTGTCCGT 59.898 45.455 0.00 0.00 0.00 4.69
62 63 2.731976 CTCGTCCTTTTTCTCTTGTCCG 59.268 50.000 0.00 0.00 0.00 4.79
63 64 3.495001 CACTCGTCCTTTTTCTCTTGTCC 59.505 47.826 0.00 0.00 0.00 4.02
64 65 3.059529 GCACTCGTCCTTTTTCTCTTGTC 60.060 47.826 0.00 0.00 0.00 3.18
65 66 2.872858 GCACTCGTCCTTTTTCTCTTGT 59.127 45.455 0.00 0.00 0.00 3.16
66 67 2.096713 CGCACTCGTCCTTTTTCTCTTG 60.097 50.000 0.00 0.00 0.00 3.02
67 68 2.135933 CGCACTCGTCCTTTTTCTCTT 58.864 47.619 0.00 0.00 0.00 2.85
68 69 1.605712 CCGCACTCGTCCTTTTTCTCT 60.606 52.381 0.00 0.00 0.00 3.10
69 70 0.790814 CCGCACTCGTCCTTTTTCTC 59.209 55.000 0.00 0.00 0.00 2.87
70 71 1.228657 GCCGCACTCGTCCTTTTTCT 61.229 55.000 0.00 0.00 0.00 2.52
71 72 1.206831 GCCGCACTCGTCCTTTTTC 59.793 57.895 0.00 0.00 0.00 2.29
72 73 0.889186 ATGCCGCACTCGTCCTTTTT 60.889 50.000 0.00 0.00 0.00 1.94
73 74 1.298859 GATGCCGCACTCGTCCTTTT 61.299 55.000 0.00 0.00 0.00 2.27
74 75 1.741770 GATGCCGCACTCGTCCTTT 60.742 57.895 0.00 0.00 0.00 3.11
75 76 2.125512 GATGCCGCACTCGTCCTT 60.126 61.111 0.00 0.00 0.00 3.36
76 77 4.498520 CGATGCCGCACTCGTCCT 62.499 66.667 13.66 0.00 0.00 3.85
77 78 3.982372 TTCGATGCCGCACTCGTCC 62.982 63.158 18.37 0.00 36.33 4.79
78 79 2.506217 TTCGATGCCGCACTCGTC 60.506 61.111 18.37 4.01 36.33 4.20
79 80 2.507102 CTTCGATGCCGCACTCGT 60.507 61.111 18.37 0.00 36.33 4.18
80 81 2.507102 ACTTCGATGCCGCACTCG 60.507 61.111 15.00 15.00 36.25 4.18
81 82 1.014044 TTCACTTCGATGCCGCACTC 61.014 55.000 0.00 0.00 35.37 3.51
82 83 1.005037 TTCACTTCGATGCCGCACT 60.005 52.632 0.00 0.00 35.37 4.40
83 84 1.421485 CTTCACTTCGATGCCGCAC 59.579 57.895 0.00 0.00 35.37 5.34
84 85 2.390599 GCTTCACTTCGATGCCGCA 61.391 57.895 0.00 0.00 38.54 5.69
85 86 2.401195 GCTTCACTTCGATGCCGC 59.599 61.111 0.00 0.00 38.54 6.53
88 89 1.537202 ACAAAGGCTTCACTTCGATGC 59.463 47.619 0.00 0.00 42.63 3.91
89 90 3.665323 CGAACAAAGGCTTCACTTCGATG 60.665 47.826 20.59 8.40 33.91 3.84
90 91 2.480419 CGAACAAAGGCTTCACTTCGAT 59.520 45.455 20.59 0.00 33.91 3.59
91 92 1.864711 CGAACAAAGGCTTCACTTCGA 59.135 47.619 20.59 0.00 33.91 3.71
92 93 1.069906 CCGAACAAAGGCTTCACTTCG 60.070 52.381 19.24 19.24 0.00 3.79
93 94 1.266989 CCCGAACAAAGGCTTCACTTC 59.733 52.381 0.00 0.99 0.00 3.01
94 95 1.318576 CCCGAACAAAGGCTTCACTT 58.681 50.000 0.00 0.00 0.00 3.16
95 96 0.182775 ACCCGAACAAAGGCTTCACT 59.817 50.000 0.00 0.00 0.00 3.41
96 97 0.591659 GACCCGAACAAAGGCTTCAC 59.408 55.000 0.00 0.00 0.00 3.18
97 98 0.536460 GGACCCGAACAAAGGCTTCA 60.536 55.000 0.00 0.00 0.00 3.02
98 99 1.241990 GGGACCCGAACAAAGGCTTC 61.242 60.000 0.00 0.00 0.00 3.86
99 100 1.228459 GGGACCCGAACAAAGGCTT 60.228 57.895 0.00 0.00 0.00 4.35
100 101 2.434774 GGGACCCGAACAAAGGCT 59.565 61.111 0.00 0.00 0.00 4.58
101 102 2.114411 TGGGACCCGAACAAAGGC 59.886 61.111 5.91 0.00 0.00 4.35
102 103 1.602605 GGTGGGACCCGAACAAAGG 60.603 63.158 5.91 0.00 30.04 3.11
103 104 4.074647 GGTGGGACCCGAACAAAG 57.925 61.111 5.91 0.00 30.04 2.77
112 113 2.436521 CACAAAAAGGGGTGGGACC 58.563 57.895 0.00 0.00 37.60 4.46
118 119 2.140138 GCCAGCCACAAAAAGGGGT 61.140 57.895 0.00 0.00 45.35 4.95
119 120 1.482748 ATGCCAGCCACAAAAAGGGG 61.483 55.000 0.00 0.00 46.82 4.79
120 121 0.320946 CATGCCAGCCACAAAAAGGG 60.321 55.000 0.00 0.00 0.00 3.95
121 122 0.393820 ACATGCCAGCCACAAAAAGG 59.606 50.000 0.00 0.00 0.00 3.11
122 123 1.202557 ACACATGCCAGCCACAAAAAG 60.203 47.619 0.00 0.00 0.00 2.27
123 124 0.829333 ACACATGCCAGCCACAAAAA 59.171 45.000 0.00 0.00 0.00 1.94
124 125 0.104487 CACACATGCCAGCCACAAAA 59.896 50.000 0.00 0.00 0.00 2.44
125 126 1.740905 CACACATGCCAGCCACAAA 59.259 52.632 0.00 0.00 0.00 2.83
126 127 2.858862 GCACACATGCCAGCCACAA 61.859 57.895 0.00 0.00 46.97 3.33
127 128 3.296836 GCACACATGCCAGCCACA 61.297 61.111 0.00 0.00 46.97 4.17
154 155 1.154413 GTTCATGTTGGCGCACTCG 60.154 57.895 10.83 0.00 39.07 4.18
155 156 0.110056 CAGTTCATGTTGGCGCACTC 60.110 55.000 10.83 0.00 0.00 3.51
156 157 0.534877 TCAGTTCATGTTGGCGCACT 60.535 50.000 10.83 0.00 0.00 4.40
157 158 0.310543 TTCAGTTCATGTTGGCGCAC 59.689 50.000 10.83 0.00 0.00 5.34
158 159 0.310543 GTTCAGTTCATGTTGGCGCA 59.689 50.000 10.83 0.00 0.00 6.09
159 160 0.593128 AGTTCAGTTCATGTTGGCGC 59.407 50.000 0.00 0.00 0.00 6.53
160 161 1.664016 GCAGTTCAGTTCATGTTGGCG 60.664 52.381 0.00 0.00 0.00 5.69
161 162 1.664016 CGCAGTTCAGTTCATGTTGGC 60.664 52.381 0.00 0.00 0.00 4.52
162 163 1.069022 CCGCAGTTCAGTTCATGTTGG 60.069 52.381 0.00 0.00 0.00 3.77
163 164 1.603802 ACCGCAGTTCAGTTCATGTTG 59.396 47.619 0.00 0.00 0.00 3.33
164 165 1.603802 CACCGCAGTTCAGTTCATGTT 59.396 47.619 0.00 0.00 0.00 2.71
165 166 1.202639 TCACCGCAGTTCAGTTCATGT 60.203 47.619 0.00 0.00 0.00 3.21
166 167 1.511850 TCACCGCAGTTCAGTTCATG 58.488 50.000 0.00 0.00 0.00 3.07
167 168 2.479566 ATCACCGCAGTTCAGTTCAT 57.520 45.000 0.00 0.00 0.00 2.57
168 169 2.254546 AATCACCGCAGTTCAGTTCA 57.745 45.000 0.00 0.00 0.00 3.18
169 170 3.626028 AAAATCACCGCAGTTCAGTTC 57.374 42.857 0.00 0.00 0.00 3.01
189 190 9.666626 CACCGACATACATTGTAGTTTTAAAAA 57.333 29.630 1.31 0.00 39.18 1.94
190 191 8.838365 ACACCGACATACATTGTAGTTTTAAAA 58.162 29.630 2.53 0.00 39.18 1.52
191 192 8.380743 ACACCGACATACATTGTAGTTTTAAA 57.619 30.769 2.53 0.00 39.18 1.52
192 193 7.966246 ACACCGACATACATTGTAGTTTTAA 57.034 32.000 2.53 0.00 39.18 1.52
193 194 7.656542 TCAACACCGACATACATTGTAGTTTTA 59.343 33.333 2.53 0.00 39.18 1.52
194 195 6.483974 TCAACACCGACATACATTGTAGTTTT 59.516 34.615 2.53 0.00 39.18 2.43
195 196 5.992829 TCAACACCGACATACATTGTAGTTT 59.007 36.000 2.53 0.00 39.18 2.66
196 197 5.407387 GTCAACACCGACATACATTGTAGTT 59.593 40.000 2.53 0.00 39.18 2.24
197 198 4.927425 GTCAACACCGACATACATTGTAGT 59.073 41.667 2.53 1.34 39.18 2.73
198 199 4.926832 TGTCAACACCGACATACATTGTAG 59.073 41.667 2.53 0.00 40.94 2.74
199 200 4.884247 TGTCAACACCGACATACATTGTA 58.116 39.130 0.00 0.00 40.94 2.41
200 201 3.734463 TGTCAACACCGACATACATTGT 58.266 40.909 0.00 0.00 40.94 2.71
209 210 1.574428 GCACCATGTCAACACCGAC 59.426 57.895 0.00 0.00 36.40 4.79
210 211 1.958715 CGCACCATGTCAACACCGA 60.959 57.895 0.00 0.00 0.00 4.69
211 212 2.555782 CGCACCATGTCAACACCG 59.444 61.111 0.00 0.00 0.00 4.94
212 213 1.599518 TCCGCACCATGTCAACACC 60.600 57.895 0.00 0.00 0.00 4.16
213 214 1.163420 TGTCCGCACCATGTCAACAC 61.163 55.000 0.00 0.00 0.00 3.32
214 215 0.250684 ATGTCCGCACCATGTCAACA 60.251 50.000 0.00 0.00 0.00 3.33
215 216 0.168788 CATGTCCGCACCATGTCAAC 59.831 55.000 0.00 0.00 35.94 3.18
216 217 0.036022 TCATGTCCGCACCATGTCAA 59.964 50.000 7.01 0.00 40.43 3.18
217 218 0.036022 TTCATGTCCGCACCATGTCA 59.964 50.000 7.01 0.00 40.43 3.58
218 219 1.164411 TTTCATGTCCGCACCATGTC 58.836 50.000 7.01 0.00 40.43 3.06
219 220 1.473677 CATTTCATGTCCGCACCATGT 59.526 47.619 7.01 0.00 40.43 3.21
220 221 1.202325 CCATTTCATGTCCGCACCATG 60.202 52.381 0.00 0.00 40.82 3.66
221 222 1.105457 CCATTTCATGTCCGCACCAT 58.895 50.000 0.00 0.00 0.00 3.55
222 223 0.964860 CCCATTTCATGTCCGCACCA 60.965 55.000 0.00 0.00 0.00 4.17
223 224 0.965363 ACCCATTTCATGTCCGCACC 60.965 55.000 0.00 0.00 0.00 5.01
224 225 0.451783 GACCCATTTCATGTCCGCAC 59.548 55.000 0.00 0.00 0.00 5.34
225 226 1.024046 CGACCCATTTCATGTCCGCA 61.024 55.000 0.00 0.00 0.00 5.69
226 227 1.714899 CCGACCCATTTCATGTCCGC 61.715 60.000 0.00 0.00 0.00 5.54
227 228 1.714899 GCCGACCCATTTCATGTCCG 61.715 60.000 0.00 0.00 0.00 4.79
228 229 1.714899 CGCCGACCCATTTCATGTCC 61.715 60.000 0.00 0.00 0.00 4.02
229 230 1.721487 CGCCGACCCATTTCATGTC 59.279 57.895 0.00 0.00 0.00 3.06
230 231 2.406616 GCGCCGACCCATTTCATGT 61.407 57.895 0.00 0.00 0.00 3.21
231 232 2.408835 GCGCCGACCCATTTCATG 59.591 61.111 0.00 0.00 0.00 3.07
232 233 3.202001 CGCGCCGACCCATTTCAT 61.202 61.111 0.00 0.00 0.00 2.57
233 234 4.690719 ACGCGCCGACCCATTTCA 62.691 61.111 5.73 0.00 0.00 2.69
234 235 3.428282 AACGCGCCGACCCATTTC 61.428 61.111 5.73 0.00 0.00 2.17
235 236 3.732892 CAACGCGCCGACCCATTT 61.733 61.111 5.73 0.00 0.00 2.32
249 250 3.116531 GTCGGTAGTGCGCCCAAC 61.117 66.667 4.18 0.00 0.00 3.77
250 251 4.382320 GGTCGGTAGTGCGCCCAA 62.382 66.667 4.18 0.00 0.00 4.12
253 254 3.887335 TTTGGGTCGGTAGTGCGCC 62.887 63.158 4.18 0.00 0.00 6.53
254 255 1.743995 ATTTGGGTCGGTAGTGCGC 60.744 57.895 0.00 0.00 0.00 6.09
255 256 1.977594 GCATTTGGGTCGGTAGTGCG 61.978 60.000 0.00 0.00 0.00 5.34
256 257 0.958382 TGCATTTGGGTCGGTAGTGC 60.958 55.000 0.00 0.00 0.00 4.40
257 258 1.086696 CTGCATTTGGGTCGGTAGTG 58.913 55.000 0.00 0.00 0.00 2.74
258 259 0.981183 TCTGCATTTGGGTCGGTAGT 59.019 50.000 0.00 0.00 0.00 2.73
259 260 1.737793 GTTCTGCATTTGGGTCGGTAG 59.262 52.381 0.00 0.00 0.00 3.18
260 261 1.349688 AGTTCTGCATTTGGGTCGGTA 59.650 47.619 0.00 0.00 0.00 4.02
261 262 0.110486 AGTTCTGCATTTGGGTCGGT 59.890 50.000 0.00 0.00 0.00 4.69
262 263 0.523072 CAGTTCTGCATTTGGGTCGG 59.477 55.000 0.00 0.00 0.00 4.79
263 264 0.523072 CCAGTTCTGCATTTGGGTCG 59.477 55.000 0.00 0.00 0.00 4.79
264 265 0.890683 CCCAGTTCTGCATTTGGGTC 59.109 55.000 13.84 0.00 44.27 4.46
265 266 3.056213 CCCAGTTCTGCATTTGGGT 57.944 52.632 13.84 0.00 44.27 4.51
267 268 1.213537 CGCCCAGTTCTGCATTTGG 59.786 57.895 0.00 0.00 0.00 3.28
268 269 1.213537 CCGCCCAGTTCTGCATTTG 59.786 57.895 0.00 0.00 0.00 2.32
269 270 0.539438 TTCCGCCCAGTTCTGCATTT 60.539 50.000 0.00 0.00 0.00 2.32
270 271 0.962356 CTTCCGCCCAGTTCTGCATT 60.962 55.000 0.00 0.00 0.00 3.56
271 272 1.377725 CTTCCGCCCAGTTCTGCAT 60.378 57.895 0.00 0.00 0.00 3.96
272 273 2.032528 CTTCCGCCCAGTTCTGCA 59.967 61.111 0.00 0.00 0.00 4.41
273 274 3.435186 GCTTCCGCCCAGTTCTGC 61.435 66.667 0.00 0.00 0.00 4.26
311 312 3.591835 AACGCACTGCCCGTTTGG 61.592 61.111 0.00 0.00 45.56 3.28
312 313 2.353376 CAACGCACTGCCCGTTTG 60.353 61.111 3.63 0.00 45.56 2.93
313 314 3.591835 CCAACGCACTGCCCGTTT 61.592 61.111 3.63 0.00 45.56 3.60
315 316 4.988598 CTCCAACGCACTGCCCGT 62.989 66.667 0.00 0.00 41.24 5.28
316 317 4.988598 ACTCCAACGCACTGCCCG 62.989 66.667 0.00 0.00 0.00 6.13
317 318 2.594592 AACTCCAACGCACTGCCC 60.595 61.111 0.00 0.00 0.00 5.36
318 319 2.639286 CAACTCCAACGCACTGCC 59.361 61.111 0.00 0.00 0.00 4.85
319 320 2.050985 GCAACTCCAACGCACTGC 60.051 61.111 0.00 0.00 0.00 4.40
320 321 0.882042 AGAGCAACTCCAACGCACTG 60.882 55.000 0.00 0.00 0.00 3.66
321 322 0.179045 AAGAGCAACTCCAACGCACT 60.179 50.000 0.00 0.00 0.00 4.40
322 323 1.508632 TAAGAGCAACTCCAACGCAC 58.491 50.000 0.00 0.00 0.00 5.34
323 324 2.289382 TGATAAGAGCAACTCCAACGCA 60.289 45.455 0.00 0.00 0.00 5.24
324 325 2.094417 GTGATAAGAGCAACTCCAACGC 59.906 50.000 0.00 0.00 0.00 4.84
325 326 2.345641 CGTGATAAGAGCAACTCCAACG 59.654 50.000 0.00 0.00 0.00 4.10
326 327 3.585862 TCGTGATAAGAGCAACTCCAAC 58.414 45.455 0.00 0.00 0.00 3.77
327 328 3.953712 TCGTGATAAGAGCAACTCCAA 57.046 42.857 0.00 0.00 0.00 3.53
328 329 3.447229 TGATCGTGATAAGAGCAACTCCA 59.553 43.478 0.00 0.00 30.51 3.86
329 330 3.799420 GTGATCGTGATAAGAGCAACTCC 59.201 47.826 0.00 0.00 35.70 3.85
330 331 4.677584 AGTGATCGTGATAAGAGCAACTC 58.322 43.478 0.00 0.00 35.70 3.01
331 332 4.727507 AGTGATCGTGATAAGAGCAACT 57.272 40.909 0.00 0.00 35.70 3.16
332 333 6.477033 ACATAAGTGATCGTGATAAGAGCAAC 59.523 38.462 0.00 0.00 35.70 4.17
333 334 6.573434 ACATAAGTGATCGTGATAAGAGCAA 58.427 36.000 0.00 0.00 35.70 3.91
334 335 6.149129 ACATAAGTGATCGTGATAAGAGCA 57.851 37.500 0.00 0.00 0.00 4.26
335 336 8.023706 TCATACATAAGTGATCGTGATAAGAGC 58.976 37.037 0.00 0.00 0.00 4.09
336 337 9.335891 GTCATACATAAGTGATCGTGATAAGAG 57.664 37.037 0.00 0.00 0.00 2.85
337 338 9.067986 AGTCATACATAAGTGATCGTGATAAGA 57.932 33.333 0.00 0.00 0.00 2.10
342 343 7.041303 GGAGTAGTCATACATAAGTGATCGTGA 60.041 40.741 0.00 0.00 34.07 4.35
350 351 6.531923 TCTAGCGGAGTAGTCATACATAAGT 58.468 40.000 0.00 0.00 34.07 2.24
351 352 7.067532 CTCTAGCGGAGTAGTCATACATAAG 57.932 44.000 0.00 0.00 37.30 1.73
411 412 1.374125 CGTGCAATCAGACCACGGA 60.374 57.895 10.67 0.00 46.03 4.69
447 458 4.012895 CAACTCACGCACGGGCAC 62.013 66.667 11.77 0.00 41.24 5.01
460 471 1.672356 GCTGTCCATCGTGCCAACT 60.672 57.895 0.00 0.00 0.00 3.16
462 473 1.965930 GTGCTGTCCATCGTGCCAA 60.966 57.895 0.00 0.00 0.00 4.52
468 479 2.821366 GGCCAGTGCTGTCCATCG 60.821 66.667 0.00 0.00 37.74 3.84
494 505 4.978186 TGAGATTTACGAAGTCACCGTAG 58.022 43.478 0.00 0.00 43.93 3.51
496 507 3.928727 TGAGATTTACGAAGTCACCGT 57.071 42.857 0.00 0.00 43.93 4.83
499 510 7.763172 ATCATCTTGAGATTTACGAAGTCAC 57.237 36.000 0.00 0.00 35.39 3.67
500 511 9.468532 CATATCATCTTGAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 35.39 3.41
501 512 9.469807 ACATATCATCTTGAGATTTACGAAGTC 57.530 33.333 0.00 0.00 35.39 3.01
502 513 9.469807 GACATATCATCTTGAGATTTACGAAGT 57.530 33.333 0.00 0.00 37.29 3.01
506 517 6.183360 GCCGACATATCATCTTGAGATTTACG 60.183 42.308 0.00 0.00 31.21 3.18
507 518 6.870965 AGCCGACATATCATCTTGAGATTTAC 59.129 38.462 0.00 0.00 31.21 2.01
508 519 6.997655 AGCCGACATATCATCTTGAGATTTA 58.002 36.000 0.00 0.00 31.21 1.40
510 521 5.011431 TGAGCCGACATATCATCTTGAGATT 59.989 40.000 0.00 0.00 31.21 2.40
511 522 4.525874 TGAGCCGACATATCATCTTGAGAT 59.474 41.667 0.00 0.00 34.56 2.75
513 524 4.236147 CTGAGCCGACATATCATCTTGAG 58.764 47.826 0.00 0.00 0.00 3.02
514 525 3.638627 ACTGAGCCGACATATCATCTTGA 59.361 43.478 0.00 0.00 0.00 3.02
517 528 3.495331 AGACTGAGCCGACATATCATCT 58.505 45.455 0.00 0.00 0.00 2.90
518 529 3.254411 TGAGACTGAGCCGACATATCATC 59.746 47.826 0.00 0.00 0.00 2.92
519 530 3.005261 GTGAGACTGAGCCGACATATCAT 59.995 47.826 0.00 0.00 0.00 2.45
520 531 2.359214 GTGAGACTGAGCCGACATATCA 59.641 50.000 0.00 0.00 0.00 2.15
522 533 1.335182 CGTGAGACTGAGCCGACATAT 59.665 52.381 0.00 0.00 0.00 1.78
523 534 0.733150 CGTGAGACTGAGCCGACATA 59.267 55.000 0.00 0.00 0.00 2.29
525 536 2.626780 CCGTGAGACTGAGCCGACA 61.627 63.158 0.00 0.00 0.00 4.35
526 537 2.179517 CCGTGAGACTGAGCCGAC 59.820 66.667 0.00 0.00 0.00 4.79
527 538 2.033602 TCCGTGAGACTGAGCCGA 59.966 61.111 0.00 0.00 0.00 5.54
529 540 1.979693 ACCTCCGTGAGACTGAGCC 60.980 63.158 2.84 0.00 29.48 4.70
530 541 1.214062 CACCTCCGTGAGACTGAGC 59.786 63.158 2.84 0.00 43.14 4.26
532 543 1.228583 AGCACCTCCGTGAGACTGA 60.229 57.895 2.84 0.00 43.14 3.41
533 544 1.214062 GAGCACCTCCGTGAGACTG 59.786 63.158 2.84 0.22 43.14 3.51
534 545 0.613292 ATGAGCACCTCCGTGAGACT 60.613 55.000 2.84 0.00 43.14 3.24
535 546 1.066303 CTATGAGCACCTCCGTGAGAC 59.934 57.143 2.84 0.00 43.14 3.36
536 547 1.393603 CTATGAGCACCTCCGTGAGA 58.606 55.000 2.84 0.00 43.14 3.27
537 548 0.387202 CCTATGAGCACCTCCGTGAG 59.613 60.000 0.00 0.00 43.14 3.51
538 549 1.043116 CCCTATGAGCACCTCCGTGA 61.043 60.000 0.00 0.00 43.14 4.35
540 551 1.762460 CCCCTATGAGCACCTCCGT 60.762 63.158 0.00 0.00 0.00 4.69
541 552 0.469331 TACCCCTATGAGCACCTCCG 60.469 60.000 0.00 0.00 0.00 4.63
542 553 1.343069 CTACCCCTATGAGCACCTCC 58.657 60.000 0.00 0.00 0.00 4.30
543 554 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
544 555 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
545 556 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
546 557 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
547 558 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
548 559 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
549 560 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
552 563 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
553 564 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
554 565 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
555 566 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
556 567 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
557 568 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
558 569 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
562 573 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
563 574 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
565 576 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
566 577 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
567 578 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
570 581 1.552792 TCATCCCTATGAACGCACACA 59.447 47.619 0.00 0.00 39.20 3.72
571 582 2.205074 CTCATCCCTATGAACGCACAC 58.795 52.381 0.00 0.00 41.57 3.82
572 583 1.831106 ACTCATCCCTATGAACGCACA 59.169 47.619 0.00 0.00 41.57 4.57
573 584 2.205074 CACTCATCCCTATGAACGCAC 58.795 52.381 0.00 0.00 41.57 5.34
574 585 1.831106 ACACTCATCCCTATGAACGCA 59.169 47.619 0.00 0.00 41.57 5.24
575 586 2.604046 ACACTCATCCCTATGAACGC 57.396 50.000 0.00 0.00 41.57 4.84
576 587 3.990469 GCATACACTCATCCCTATGAACG 59.010 47.826 0.00 0.00 41.57 3.95
577 588 3.990469 CGCATACACTCATCCCTATGAAC 59.010 47.826 0.00 0.00 41.57 3.18
579 590 2.029020 GCGCATACACTCATCCCTATGA 60.029 50.000 0.30 0.00 39.87 2.15
581 592 1.067565 CGCGCATACACTCATCCCTAT 60.068 52.381 8.75 0.00 0.00 2.57
583 594 1.068083 CGCGCATACACTCATCCCT 59.932 57.895 8.75 0.00 0.00 4.20
584 595 1.227263 ACGCGCATACACTCATCCC 60.227 57.895 5.73 0.00 0.00 3.85
585 596 0.806102 ACACGCGCATACACTCATCC 60.806 55.000 5.73 0.00 0.00 3.51
586 597 1.835121 TACACGCGCATACACTCATC 58.165 50.000 5.73 0.00 0.00 2.92
587 598 2.509052 ATACACGCGCATACACTCAT 57.491 45.000 5.73 0.00 0.00 2.90
588 599 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
589 600 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
591 602 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
592 603 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
593 604 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
594 605 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
596 607 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
600 611 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
601 612 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
602 613 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
603 614 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
604 615 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
605 616 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
606 617 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
607 618 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
608 619 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
609 620 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
610 621 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
611 622 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
612 623 1.391485 GCATCAGTACAGACACAAGCG 59.609 52.381 0.00 0.00 0.00 4.68
613 624 2.670414 GAGCATCAGTACAGACACAAGC 59.330 50.000 0.00 0.00 33.17 4.01
628 639 4.446719 CCAGTGCTTTTTCTTTTGAGCATC 59.553 41.667 0.00 0.00 45.69 3.91
629 640 4.374399 CCAGTGCTTTTTCTTTTGAGCAT 58.626 39.130 0.00 0.00 45.69 3.79
631 642 2.541346 GCCAGTGCTTTTTCTTTTGAGC 59.459 45.455 0.00 0.00 35.74 4.26
632 643 3.126073 GGCCAGTGCTTTTTCTTTTGAG 58.874 45.455 0.00 0.00 37.74 3.02
633 644 2.499289 TGGCCAGTGCTTTTTCTTTTGA 59.501 40.909 0.00 0.00 37.74 2.69
635 646 3.055167 ACTTGGCCAGTGCTTTTTCTTTT 60.055 39.130 5.11 0.00 37.74 2.27
636 647 2.501316 ACTTGGCCAGTGCTTTTTCTTT 59.499 40.909 5.11 0.00 37.74 2.52
637 648 2.110578 ACTTGGCCAGTGCTTTTTCTT 58.889 42.857 5.11 0.00 37.74 2.52
638 649 1.410153 CACTTGGCCAGTGCTTTTTCT 59.590 47.619 18.37 0.00 46.70 2.52
639 650 1.856802 CACTTGGCCAGTGCTTTTTC 58.143 50.000 18.37 0.00 46.70 2.29
936 947 0.479378 GGGAGGATCTCGGAGGTAGT 59.521 60.000 4.96 0.00 33.73 2.73
937 948 3.349879 GGGAGGATCTCGGAGGTAG 57.650 63.158 4.96 0.00 33.73 3.18
1413 1458 3.506096 CATCCCGCAGCAGCAGTG 61.506 66.667 0.82 0.00 42.27 3.66
1416 1461 4.728110 AAGCATCCCGCAGCAGCA 62.728 61.111 0.82 0.00 46.13 4.41
1417 1462 3.407046 GAAAGCATCCCGCAGCAGC 62.407 63.158 0.00 0.00 46.13 5.25
1418 1463 2.796651 GAAAGCATCCCGCAGCAG 59.203 61.111 0.00 0.00 46.13 4.24
1419 1464 3.126879 CGAAAGCATCCCGCAGCA 61.127 61.111 0.00 0.00 46.13 4.41
1468 1514 1.233019 CAGCAGTTGGTCTTCAGTGG 58.767 55.000 0.00 0.00 0.00 4.00
1469 1515 1.600957 CACAGCAGTTGGTCTTCAGTG 59.399 52.381 0.00 0.00 0.00 3.66
1503 1562 7.488322 AGAAAGAAGCATCTACACAGATCTAC 58.512 38.462 0.00 0.00 39.62 2.59
1532 1591 4.590850 AAAAGTTGCAGCTCCTAAAAGG 57.409 40.909 2.60 0.00 36.46 3.11
1556 1620 3.679389 AGGTTGCACTTCCTACATCTTG 58.321 45.455 2.87 0.00 31.66 3.02
1557 1621 4.074970 CAAGGTTGCACTTCCTACATCTT 58.925 43.478 4.95 0.00 33.27 2.40
1630 1695 5.752036 TCAGAGATCAAGACCACAGATTT 57.248 39.130 0.00 0.00 0.00 2.17
1661 1726 4.712476 AGATGAGGATCCAAGCATTACAC 58.288 43.478 15.82 3.07 0.00 2.90
1669 1734 4.066490 GCAATCAGAGATGAGGATCCAAG 58.934 47.826 15.82 0.00 0.00 3.61
1673 1738 4.877378 AGAGCAATCAGAGATGAGGATC 57.123 45.455 0.00 0.00 0.00 3.36
1677 1742 4.933505 TGGTAGAGCAATCAGAGATGAG 57.066 45.455 0.00 0.00 0.00 2.90
1723 1856 7.912773 TGCGATGTTTAATTATGTGTACATTGG 59.087 33.333 0.00 0.00 37.76 3.16
1724 1857 8.833976 TGCGATGTTTAATTATGTGTACATTG 57.166 30.769 0.00 0.00 37.76 2.82
1725 1858 9.502145 CTTGCGATGTTTAATTATGTGTACATT 57.498 29.630 0.00 0.00 37.76 2.71
1735 1887 5.344665 GCTTTGTGCTTGCGATGTTTAATTA 59.655 36.000 0.00 0.00 38.95 1.40
1805 1958 1.337384 ATATCAGGAGCACGGTGGCA 61.337 55.000 10.60 0.00 35.83 4.92
1831 1984 5.577835 TGTGAAGTGTAACAAATGAACAGC 58.422 37.500 0.00 0.00 41.43 4.40
1838 1991 9.313118 GAAGGAATTTTGTGAAGTGTAACAAAT 57.687 29.630 2.17 0.00 43.66 2.32
1849 2002 5.948742 AACAAGGGAAGGAATTTTGTGAA 57.051 34.783 0.00 0.00 32.75 3.18
1850 2003 5.948742 AAACAAGGGAAGGAATTTTGTGA 57.051 34.783 0.00 0.00 32.75 3.58
1855 2008 7.770433 CAGAAAGAAAAACAAGGGAAGGAATTT 59.230 33.333 0.00 0.00 0.00 1.82
1856 2009 7.092891 ACAGAAAGAAAAACAAGGGAAGGAATT 60.093 33.333 0.00 0.00 0.00 2.17
1860 2013 5.351458 CACAGAAAGAAAAACAAGGGAAGG 58.649 41.667 0.00 0.00 0.00 3.46
1870 2023 7.125659 AGGGAAGAAATTCCACAGAAAGAAAAA 59.874 33.333 9.13 0.00 42.89 1.94
1871 2024 6.611236 AGGGAAGAAATTCCACAGAAAGAAAA 59.389 34.615 9.13 0.00 42.89 2.29
1872 2025 6.136155 AGGGAAGAAATTCCACAGAAAGAAA 58.864 36.000 9.13 0.00 42.89 2.52
1874 2027 5.324832 AGGGAAGAAATTCCACAGAAAGA 57.675 39.130 9.13 0.00 42.89 2.52
1875 2028 5.302823 ACAAGGGAAGAAATTCCACAGAAAG 59.697 40.000 9.13 0.00 42.89 2.62
1876 2029 5.068987 CACAAGGGAAGAAATTCCACAGAAA 59.931 40.000 9.13 0.00 42.89 2.52
1879 2032 3.891366 ACACAAGGGAAGAAATTCCACAG 59.109 43.478 9.13 0.93 42.89 3.66
1881 2034 4.937201 AACACAAGGGAAGAAATTCCAC 57.063 40.909 9.13 0.00 42.89 4.02
1900 2058 8.440833 GTTGTATGTATCAGTGGTTGTCTAAAC 58.559 37.037 0.00 0.00 0.00 2.01
1929 2087 1.827969 TGGTCCTTGTGTTGTTTTGGG 59.172 47.619 0.00 0.00 0.00 4.12
1949 2107 4.787871 GCAAGGGCTAGCGATGAT 57.212 55.556 9.00 0.00 36.96 2.45
2082 2240 1.065928 GTATGTGGAGAGGGACGCG 59.934 63.158 3.53 3.53 0.00 6.01
2142 2300 0.890996 CTGCTCCACCTCACCCAAAC 60.891 60.000 0.00 0.00 0.00 2.93
2148 2306 2.745492 GCTGCTGCTCCACCTCAC 60.745 66.667 8.53 0.00 36.03 3.51
2202 2360 3.181455 CCGTGGTGGAAGATATTGATCCA 60.181 47.826 0.00 2.02 42.00 3.41
2240 2398 1.042229 AAGTGAAGCATTGGCAAGCA 58.958 45.000 19.03 5.31 44.61 3.91
2322 2480 4.081862 TCGAAGGAAATTCTCGCCTTAGAA 60.082 41.667 0.00 0.00 41.85 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.