Multiple sequence alignment - TraesCS7A01G457500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G457500 chr7A 100.000 5309 0 0 1 5309 652723988 652729296 0.000000e+00 9804
1 TraesCS7A01G457500 chr7B 89.548 3253 217 59 335 3525 620657815 620654624 0.000000e+00 4010
2 TraesCS7A01G457500 chr7B 90.467 1091 76 13 3569 4634 620654623 620653536 0.000000e+00 1413
3 TraesCS7A01G457500 chr7B 91.731 520 37 4 1250 1764 557311994 557312512 0.000000e+00 717
4 TraesCS7A01G457500 chr7B 91.538 520 38 4 1250 1764 678981061 678980543 0.000000e+00 712
5 TraesCS7A01G457500 chr7B 90.676 429 25 7 4878 5294 620653245 620652820 1.670000e-154 556
6 TraesCS7A01G457500 chr7B 84.083 289 17 11 4580 4848 620653521 620653242 8.830000e-63 252
7 TraesCS7A01G457500 chr7D 88.995 1890 142 30 273 2144 566553710 566555551 0.000000e+00 2278
8 TraesCS7A01G457500 chr7D 95.075 995 38 3 2171 3164 566555874 566556858 0.000000e+00 1555
9 TraesCS7A01G457500 chr7D 95.238 819 36 1 3561 4379 566557496 566558311 0.000000e+00 1293
10 TraesCS7A01G457500 chr7D 84.974 945 73 35 4391 5295 566558294 566559209 0.000000e+00 894
11 TraesCS7A01G457500 chr7D 87.500 352 13 13 3163 3513 566557087 566557408 1.400000e-100 377
12 TraesCS7A01G457500 chr6B 91.731 520 37 4 1250 1764 452991371 452991889 0.000000e+00 717
13 TraesCS7A01G457500 chr1B 91.731 520 37 4 1250 1764 24584139 24583621 0.000000e+00 717
14 TraesCS7A01G457500 chr1B 91.538 520 38 4 1250 1764 563972258 563972776 0.000000e+00 712
15 TraesCS7A01G457500 chr5B 91.538 520 38 4 1250 1764 337799564 337800082 0.000000e+00 712
16 TraesCS7A01G457500 chr5B 91.538 520 38 4 1250 1764 614476976 614477494 0.000000e+00 712
17 TraesCS7A01G457500 chr6A 75.862 261 38 16 4963 5206 109389580 109389328 5.620000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G457500 chr7A 652723988 652729296 5308 False 9804.00 9804 100.0000 1 5309 1 chr7A.!!$F1 5308
1 TraesCS7A01G457500 chr7B 620652820 620657815 4995 True 1557.75 4010 88.6935 335 5294 4 chr7B.!!$R2 4959
2 TraesCS7A01G457500 chr7B 557311994 557312512 518 False 717.00 717 91.7310 1250 1764 1 chr7B.!!$F1 514
3 TraesCS7A01G457500 chr7B 678980543 678981061 518 True 712.00 712 91.5380 1250 1764 1 chr7B.!!$R1 514
4 TraesCS7A01G457500 chr7D 566553710 566559209 5499 False 1279.40 2278 90.3564 273 5295 5 chr7D.!!$F1 5022
5 TraesCS7A01G457500 chr6B 452991371 452991889 518 False 717.00 717 91.7310 1250 1764 1 chr6B.!!$F1 514
6 TraesCS7A01G457500 chr1B 24583621 24584139 518 True 717.00 717 91.7310 1250 1764 1 chr1B.!!$R1 514
7 TraesCS7A01G457500 chr1B 563972258 563972776 518 False 712.00 712 91.5380 1250 1764 1 chr1B.!!$F1 514
8 TraesCS7A01G457500 chr5B 337799564 337800082 518 False 712.00 712 91.5380 1250 1764 1 chr5B.!!$F1 514
9 TraesCS7A01G457500 chr5B 614476976 614477494 518 False 712.00 712 91.5380 1250 1764 1 chr5B.!!$F2 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 298 0.036952 AGGTCTGTGCCATTCTGACG 60.037 55.0 0.00 0.00 35.58 4.35 F
313 314 0.179097 GACGTCTCTGCCCCTCAATC 60.179 60.0 8.70 0.00 0.00 2.67 F
600 601 0.247736 GATCAGCCTGTGGACGAACT 59.752 55.0 0.00 0.00 0.00 3.01 F
1876 1934 0.037326 TGGATCTGTGGTCAGCGTTC 60.037 55.0 0.00 0.00 41.10 3.95 F
2838 3210 1.848652 AGGTAAGCTTCGGTGCTCTA 58.151 50.0 0.00 0.00 43.24 2.43 F
4024 4709 1.042229 AAGTGAAGCATTGGCAAGCA 58.958 45.0 19.03 5.31 44.61 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1858 1916 0.247736 AGAACGCTGACCACAGATCC 59.752 55.000 0.00 0.0 46.03 3.36 R
1864 1922 1.166531 AAGGCAAGAACGCTGACCAC 61.167 55.000 0.00 0.0 0.00 4.16 R
2078 2139 1.297968 TCAAGCCCCCATTCTGATGA 58.702 50.000 0.00 0.0 35.16 2.92 R
3394 3998 0.316937 CACACACGGTGCATGACAAC 60.317 55.000 8.30 0.0 41.36 3.32 R
4062 4747 1.540146 GCAGAAACCGCCCATGTTTTT 60.540 47.619 0.00 0.0 36.13 1.94 R
5044 5883 1.961277 CCGTGCCGCACTTCTTCTT 60.961 57.895 20.87 0.0 31.34 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.592196 ACACAATTCATTATTCTAATATGGCCT 57.408 29.630 3.32 0.00 0.00 5.19
31 32 9.850628 CACAATTCATTATTCTAATATGGCCTG 57.149 33.333 3.32 0.00 0.00 4.85
32 33 8.526147 ACAATTCATTATTCTAATATGGCCTGC 58.474 33.333 3.32 0.00 0.00 4.85
33 34 8.525316 CAATTCATTATTCTAATATGGCCTGCA 58.475 33.333 3.32 0.00 0.00 4.41
34 35 7.452880 TTCATTATTCTAATATGGCCTGCAC 57.547 36.000 3.32 0.00 0.00 4.57
35 36 6.541907 TCATTATTCTAATATGGCCTGCACA 58.458 36.000 3.32 0.00 0.00 4.57
36 37 7.177184 TCATTATTCTAATATGGCCTGCACAT 58.823 34.615 3.32 0.00 0.00 3.21
37 38 7.337689 TCATTATTCTAATATGGCCTGCACATC 59.662 37.037 3.32 0.00 0.00 3.06
38 39 4.712051 TTCTAATATGGCCTGCACATCT 57.288 40.909 3.32 0.00 0.00 2.90
39 40 4.277515 TCTAATATGGCCTGCACATCTC 57.722 45.455 3.32 0.00 0.00 2.75
40 41 3.647590 TCTAATATGGCCTGCACATCTCA 59.352 43.478 3.32 0.00 0.00 3.27
41 42 2.267174 ATATGGCCTGCACATCTCAC 57.733 50.000 3.32 0.00 0.00 3.51
42 43 0.911053 TATGGCCTGCACATCTCACA 59.089 50.000 3.32 0.00 0.00 3.58
43 44 0.393944 ATGGCCTGCACATCTCACAG 60.394 55.000 3.32 0.00 0.00 3.66
49 50 2.708051 CTGCACATCTCACAGGATTGT 58.292 47.619 0.00 0.00 38.31 2.71
50 51 3.865446 CTGCACATCTCACAGGATTGTA 58.135 45.455 0.00 0.00 35.25 2.41
51 52 3.599343 TGCACATCTCACAGGATTGTAC 58.401 45.455 0.00 0.00 35.25 2.90
52 53 2.939103 GCACATCTCACAGGATTGTACC 59.061 50.000 0.00 0.00 35.25 3.34
53 54 3.619733 GCACATCTCACAGGATTGTACCA 60.620 47.826 0.00 0.00 35.25 3.25
54 55 4.578871 CACATCTCACAGGATTGTACCAA 58.421 43.478 0.00 0.00 35.25 3.67
55 56 5.003160 CACATCTCACAGGATTGTACCAAA 58.997 41.667 0.00 0.00 35.25 3.28
56 57 5.473162 CACATCTCACAGGATTGTACCAAAA 59.527 40.000 0.00 0.00 35.25 2.44
57 58 6.016360 CACATCTCACAGGATTGTACCAAAAA 60.016 38.462 0.00 0.00 35.25 1.94
76 77 3.611025 AAAAAGGGTGATGGTTGAGGA 57.389 42.857 0.00 0.00 0.00 3.71
77 78 3.611025 AAAAGGGTGATGGTTGAGGAA 57.389 42.857 0.00 0.00 0.00 3.36
78 79 2.586648 AAGGGTGATGGTTGAGGAAC 57.413 50.000 0.00 0.00 0.00 3.62
79 80 1.444933 AGGGTGATGGTTGAGGAACA 58.555 50.000 0.00 0.00 33.27 3.18
80 81 1.995542 AGGGTGATGGTTGAGGAACAT 59.004 47.619 0.00 0.00 33.27 2.71
81 82 2.094675 GGGTGATGGTTGAGGAACATG 58.905 52.381 0.00 0.00 33.27 3.21
82 83 2.290896 GGGTGATGGTTGAGGAACATGA 60.291 50.000 0.00 0.00 33.27 3.07
83 84 2.749621 GGTGATGGTTGAGGAACATGAC 59.250 50.000 0.00 0.00 33.27 3.06
84 85 3.411446 GTGATGGTTGAGGAACATGACA 58.589 45.455 0.00 0.00 33.27 3.58
85 86 3.438087 GTGATGGTTGAGGAACATGACAG 59.562 47.826 0.00 0.00 33.27 3.51
86 87 3.072915 TGATGGTTGAGGAACATGACAGT 59.927 43.478 0.00 0.00 33.27 3.55
87 88 4.285775 TGATGGTTGAGGAACATGACAGTA 59.714 41.667 0.00 0.00 33.27 2.74
88 89 4.271696 TGGTTGAGGAACATGACAGTAG 57.728 45.455 0.00 0.00 33.27 2.57
89 90 3.901222 TGGTTGAGGAACATGACAGTAGA 59.099 43.478 0.00 0.00 33.27 2.59
90 91 4.021104 TGGTTGAGGAACATGACAGTAGAG 60.021 45.833 0.00 0.00 33.27 2.43
91 92 3.876274 TGAGGAACATGACAGTAGAGC 57.124 47.619 0.00 0.00 0.00 4.09
92 93 3.165071 TGAGGAACATGACAGTAGAGCA 58.835 45.455 0.00 0.00 0.00 4.26
93 94 3.578282 TGAGGAACATGACAGTAGAGCAA 59.422 43.478 0.00 0.00 0.00 3.91
94 95 3.929610 GAGGAACATGACAGTAGAGCAAC 59.070 47.826 0.00 0.00 0.00 4.17
95 96 3.580458 AGGAACATGACAGTAGAGCAACT 59.420 43.478 0.00 0.00 0.00 3.16
103 104 1.650528 AGTAGAGCAACTGAAGGCCT 58.349 50.000 0.00 0.00 0.00 5.19
104 105 2.821437 AGTAGAGCAACTGAAGGCCTA 58.179 47.619 5.16 0.00 0.00 3.93
105 106 2.763448 AGTAGAGCAACTGAAGGCCTAG 59.237 50.000 5.16 2.46 0.00 3.02
106 107 1.650528 AGAGCAACTGAAGGCCTAGT 58.349 50.000 5.16 3.31 0.00 2.57
107 108 1.277557 AGAGCAACTGAAGGCCTAGTG 59.722 52.381 5.16 0.72 0.00 2.74
108 109 1.002544 GAGCAACTGAAGGCCTAGTGT 59.997 52.381 5.16 1.48 0.00 3.55
109 110 1.160137 GCAACTGAAGGCCTAGTGTG 58.840 55.000 5.16 9.26 0.00 3.82
110 111 1.160137 CAACTGAAGGCCTAGTGTGC 58.840 55.000 5.16 0.00 0.00 4.57
111 112 1.059913 AACTGAAGGCCTAGTGTGCT 58.940 50.000 5.16 0.00 0.00 4.40
112 113 1.059913 ACTGAAGGCCTAGTGTGCTT 58.940 50.000 5.16 0.00 0.00 3.91
113 114 2.257207 ACTGAAGGCCTAGTGTGCTTA 58.743 47.619 5.16 0.00 0.00 3.09
114 115 2.637872 ACTGAAGGCCTAGTGTGCTTAA 59.362 45.455 5.16 0.00 0.00 1.85
115 116 3.264450 ACTGAAGGCCTAGTGTGCTTAAT 59.736 43.478 5.16 0.00 0.00 1.40
116 117 3.609853 TGAAGGCCTAGTGTGCTTAATG 58.390 45.455 5.16 0.00 0.00 1.90
117 118 2.044123 AGGCCTAGTGTGCTTAATGC 57.956 50.000 1.29 0.00 43.25 3.56
118 119 1.025041 GGCCTAGTGTGCTTAATGCC 58.975 55.000 0.00 0.00 42.00 4.40
119 120 1.025041 GCCTAGTGTGCTTAATGCCC 58.975 55.000 0.00 0.00 42.00 5.36
120 121 1.681780 GCCTAGTGTGCTTAATGCCCA 60.682 52.381 0.00 0.00 42.00 5.36
121 122 2.722094 CCTAGTGTGCTTAATGCCCAA 58.278 47.619 0.00 0.00 42.00 4.12
122 123 3.088532 CCTAGTGTGCTTAATGCCCAAA 58.911 45.455 0.00 0.00 42.00 3.28
123 124 3.701040 CCTAGTGTGCTTAATGCCCAAAT 59.299 43.478 0.00 0.00 42.00 2.32
124 125 3.874392 AGTGTGCTTAATGCCCAAATC 57.126 42.857 0.00 0.00 42.00 2.17
125 126 3.164268 AGTGTGCTTAATGCCCAAATCA 58.836 40.909 0.00 0.00 42.00 2.57
126 127 3.056607 AGTGTGCTTAATGCCCAAATCAC 60.057 43.478 0.00 0.00 42.00 3.06
127 128 2.896044 TGTGCTTAATGCCCAAATCACA 59.104 40.909 0.00 0.00 42.00 3.58
128 129 3.514706 TGTGCTTAATGCCCAAATCACAT 59.485 39.130 0.00 0.00 42.00 3.21
129 130 4.020396 TGTGCTTAATGCCCAAATCACATT 60.020 37.500 0.00 0.00 42.00 2.71
130 131 4.567959 GTGCTTAATGCCCAAATCACATTC 59.432 41.667 0.00 0.00 42.00 2.67
131 132 4.222366 TGCTTAATGCCCAAATCACATTCA 59.778 37.500 0.00 0.00 42.00 2.57
132 133 4.567959 GCTTAATGCCCAAATCACATTCAC 59.432 41.667 0.00 0.00 35.68 3.18
133 134 5.722263 CTTAATGCCCAAATCACATTCACA 58.278 37.500 0.00 0.00 35.68 3.58
134 135 4.829872 AATGCCCAAATCACATTCACAT 57.170 36.364 0.00 0.00 27.91 3.21
135 136 3.872511 TGCCCAAATCACATTCACATC 57.127 42.857 0.00 0.00 0.00 3.06
136 137 3.433343 TGCCCAAATCACATTCACATCT 58.567 40.909 0.00 0.00 0.00 2.90
137 138 4.598022 TGCCCAAATCACATTCACATCTA 58.402 39.130 0.00 0.00 0.00 1.98
138 139 5.202765 TGCCCAAATCACATTCACATCTAT 58.797 37.500 0.00 0.00 0.00 1.98
139 140 5.068067 TGCCCAAATCACATTCACATCTATG 59.932 40.000 0.00 0.00 0.00 2.23
140 141 5.300034 GCCCAAATCACATTCACATCTATGA 59.700 40.000 0.00 0.00 0.00 2.15
141 142 6.514541 GCCCAAATCACATTCACATCTATGAG 60.515 42.308 0.00 0.00 0.00 2.90
142 143 6.544931 CCCAAATCACATTCACATCTATGAGT 59.455 38.462 0.00 0.00 0.00 3.41
143 144 7.067859 CCCAAATCACATTCACATCTATGAGTT 59.932 37.037 0.00 0.00 0.00 3.01
144 145 9.112725 CCAAATCACATTCACATCTATGAGTTA 57.887 33.333 0.00 0.00 0.00 2.24
145 146 9.926751 CAAATCACATTCACATCTATGAGTTAC 57.073 33.333 0.00 0.00 0.00 2.50
146 147 9.896645 AAATCACATTCACATCTATGAGTTACT 57.103 29.630 0.00 0.00 0.00 2.24
149 150 9.971922 TCACATTCACATCTATGAGTTACTATG 57.028 33.333 0.00 0.00 0.00 2.23
150 151 9.201127 CACATTCACATCTATGAGTTACTATGG 57.799 37.037 0.00 0.00 0.00 2.74
151 152 8.370940 ACATTCACATCTATGAGTTACTATGGG 58.629 37.037 0.00 0.00 0.00 4.00
152 153 6.918067 TCACATCTATGAGTTACTATGGGG 57.082 41.667 0.00 0.00 0.00 4.96
153 154 5.780282 TCACATCTATGAGTTACTATGGGGG 59.220 44.000 0.00 0.00 0.00 5.40
154 155 5.780282 CACATCTATGAGTTACTATGGGGGA 59.220 44.000 0.00 0.00 0.00 4.81
155 156 6.270000 CACATCTATGAGTTACTATGGGGGAA 59.730 42.308 0.00 0.00 0.00 3.97
156 157 6.849697 ACATCTATGAGTTACTATGGGGGAAA 59.150 38.462 0.00 0.00 0.00 3.13
157 158 7.349859 ACATCTATGAGTTACTATGGGGGAAAA 59.650 37.037 0.00 0.00 0.00 2.29
158 159 7.374975 TCTATGAGTTACTATGGGGGAAAAG 57.625 40.000 0.00 0.00 0.00 2.27
159 160 6.906901 TCTATGAGTTACTATGGGGGAAAAGT 59.093 38.462 0.00 0.00 0.00 2.66
160 161 5.853572 TGAGTTACTATGGGGGAAAAGTT 57.146 39.130 0.00 0.00 0.00 2.66
161 162 6.956102 TGAGTTACTATGGGGGAAAAGTTA 57.044 37.500 0.00 0.00 0.00 2.24
162 163 6.714278 TGAGTTACTATGGGGGAAAAGTTAC 58.286 40.000 0.00 0.00 0.00 2.50
163 164 6.272792 TGAGTTACTATGGGGGAAAAGTTACA 59.727 38.462 0.00 0.00 0.00 2.41
164 165 7.037153 TGAGTTACTATGGGGGAAAAGTTACAT 60.037 37.037 0.00 0.00 0.00 2.29
165 166 7.344134 AGTTACTATGGGGGAAAAGTTACATC 58.656 38.462 0.00 0.00 0.00 3.06
166 167 5.789574 ACTATGGGGGAAAAGTTACATCA 57.210 39.130 0.00 0.00 0.00 3.07
167 168 6.341408 ACTATGGGGGAAAAGTTACATCAT 57.659 37.500 0.00 0.00 0.00 2.45
168 169 7.460214 ACTATGGGGGAAAAGTTACATCATA 57.540 36.000 0.00 0.00 0.00 2.15
169 170 7.287810 ACTATGGGGGAAAAGTTACATCATAC 58.712 38.462 0.00 0.00 0.00 2.39
170 171 4.862371 TGGGGGAAAAGTTACATCATACC 58.138 43.478 0.00 0.00 0.00 2.73
171 172 4.292571 TGGGGGAAAAGTTACATCATACCA 59.707 41.667 0.00 0.00 0.00 3.25
172 173 5.043732 TGGGGGAAAAGTTACATCATACCAT 60.044 40.000 0.00 0.00 0.00 3.55
173 174 5.301805 GGGGGAAAAGTTACATCATACCATG 59.698 44.000 0.00 0.00 0.00 3.66
174 175 5.891551 GGGGAAAAGTTACATCATACCATGT 59.108 40.000 0.00 0.00 40.28 3.21
175 176 6.039382 GGGGAAAAGTTACATCATACCATGTC 59.961 42.308 0.00 0.00 38.07 3.06
176 177 6.039382 GGGAAAAGTTACATCATACCATGTCC 59.961 42.308 0.00 0.00 38.07 4.02
177 178 6.601613 GGAAAAGTTACATCATACCATGTCCA 59.398 38.462 0.00 0.00 38.07 4.02
178 179 7.285401 GGAAAAGTTACATCATACCATGTCCAT 59.715 37.037 0.00 0.00 38.07 3.41
179 180 9.337396 GAAAAGTTACATCATACCATGTCCATA 57.663 33.333 0.00 0.00 38.07 2.74
180 181 9.693739 AAAAGTTACATCATACCATGTCCATAA 57.306 29.630 0.00 0.00 38.07 1.90
181 182 8.908786 AAGTTACATCATACCATGTCCATAAG 57.091 34.615 0.00 0.00 38.07 1.73
182 183 6.936900 AGTTACATCATACCATGTCCATAAGC 59.063 38.462 0.00 0.00 38.07 3.09
183 184 5.573380 ACATCATACCATGTCCATAAGCT 57.427 39.130 0.00 0.00 30.76 3.74
184 185 5.555017 ACATCATACCATGTCCATAAGCTC 58.445 41.667 0.00 0.00 30.76 4.09
185 186 5.072193 ACATCATACCATGTCCATAAGCTCA 59.928 40.000 0.00 0.00 30.76 4.26
186 187 5.219343 TCATACCATGTCCATAAGCTCAG 57.781 43.478 0.00 0.00 0.00 3.35
187 188 4.040829 TCATACCATGTCCATAAGCTCAGG 59.959 45.833 0.00 0.00 0.00 3.86
188 189 2.200081 ACCATGTCCATAAGCTCAGGT 58.800 47.619 0.00 0.00 0.00 4.00
189 190 2.578021 ACCATGTCCATAAGCTCAGGTT 59.422 45.455 0.00 0.00 0.00 3.50
190 191 3.010584 ACCATGTCCATAAGCTCAGGTTT 59.989 43.478 0.00 0.00 0.00 3.27
191 192 3.629398 CCATGTCCATAAGCTCAGGTTTC 59.371 47.826 0.00 0.00 0.00 2.78
192 193 2.972625 TGTCCATAAGCTCAGGTTTCG 58.027 47.619 0.00 0.00 0.00 3.46
193 194 2.301870 TGTCCATAAGCTCAGGTTTCGT 59.698 45.455 0.00 0.00 0.00 3.85
194 195 2.673368 GTCCATAAGCTCAGGTTTCGTG 59.327 50.000 0.00 0.00 0.00 4.35
195 196 2.565391 TCCATAAGCTCAGGTTTCGTGA 59.435 45.455 0.00 0.00 0.00 4.35
196 197 3.007506 TCCATAAGCTCAGGTTTCGTGAA 59.992 43.478 0.00 0.00 0.00 3.18
197 198 3.941483 CCATAAGCTCAGGTTTCGTGAAT 59.059 43.478 0.00 0.00 0.00 2.57
198 199 4.201851 CCATAAGCTCAGGTTTCGTGAATG 60.202 45.833 0.00 0.00 0.00 2.67
199 200 2.550830 AGCTCAGGTTTCGTGAATGT 57.449 45.000 0.00 0.00 0.00 2.71
200 201 2.146342 AGCTCAGGTTTCGTGAATGTG 58.854 47.619 0.00 0.00 0.00 3.21
201 202 2.143122 GCTCAGGTTTCGTGAATGTGA 58.857 47.619 0.00 0.00 0.00 3.58
202 203 2.096218 GCTCAGGTTTCGTGAATGTGAC 60.096 50.000 0.00 0.00 0.00 3.67
203 204 3.130633 CTCAGGTTTCGTGAATGTGACA 58.869 45.455 0.00 0.00 0.00 3.58
204 205 2.869801 TCAGGTTTCGTGAATGTGACAC 59.130 45.455 0.00 0.00 35.26 3.67
205 206 2.032030 CAGGTTTCGTGAATGTGACACC 60.032 50.000 2.45 0.00 35.61 4.16
206 207 1.944024 GGTTTCGTGAATGTGACACCA 59.056 47.619 2.45 0.00 35.50 4.17
207 208 2.552315 GGTTTCGTGAATGTGACACCAT 59.448 45.455 2.45 0.00 35.50 3.55
208 209 3.004315 GGTTTCGTGAATGTGACACCATT 59.996 43.478 2.45 3.26 35.50 3.16
209 210 4.499019 GGTTTCGTGAATGTGACACCATTT 60.499 41.667 2.45 0.00 35.50 2.32
210 211 4.481930 TTCGTGAATGTGACACCATTTC 57.518 40.909 2.45 4.81 35.24 2.17
211 212 3.738982 TCGTGAATGTGACACCATTTCT 58.261 40.909 2.45 0.00 35.24 2.52
212 213 3.498018 TCGTGAATGTGACACCATTTCTG 59.502 43.478 2.45 2.43 35.24 3.02
213 214 3.498018 CGTGAATGTGACACCATTTCTGA 59.502 43.478 2.45 0.00 35.24 3.27
214 215 4.154737 CGTGAATGTGACACCATTTCTGAT 59.845 41.667 2.45 0.00 35.24 2.90
215 216 5.335113 CGTGAATGTGACACCATTTCTGATT 60.335 40.000 2.45 0.00 35.24 2.57
216 217 6.449698 GTGAATGTGACACCATTTCTGATTT 58.550 36.000 2.45 0.00 35.24 2.17
217 218 6.925165 GTGAATGTGACACCATTTCTGATTTT 59.075 34.615 2.45 0.00 35.24 1.82
218 219 8.081633 GTGAATGTGACACCATTTCTGATTTTA 58.918 33.333 2.45 0.00 35.24 1.52
219 220 8.081633 TGAATGTGACACCATTTCTGATTTTAC 58.918 33.333 2.45 0.00 35.24 2.01
220 221 6.951062 TGTGACACCATTTCTGATTTTACA 57.049 33.333 2.45 0.00 0.00 2.41
221 222 6.969366 TGTGACACCATTTCTGATTTTACAG 58.031 36.000 2.45 0.00 39.02 2.74
222 223 6.545666 TGTGACACCATTTCTGATTTTACAGT 59.454 34.615 2.45 0.00 38.79 3.55
223 224 7.717436 TGTGACACCATTTCTGATTTTACAGTA 59.283 33.333 2.45 0.00 38.79 2.74
224 225 8.015658 GTGACACCATTTCTGATTTTACAGTAC 58.984 37.037 0.00 0.00 38.79 2.73
225 226 7.936847 TGACACCATTTCTGATTTTACAGTACT 59.063 33.333 0.00 0.00 38.79 2.73
226 227 8.691661 ACACCATTTCTGATTTTACAGTACTT 57.308 30.769 0.00 0.00 38.79 2.24
227 228 9.131791 ACACCATTTCTGATTTTACAGTACTTT 57.868 29.630 0.00 0.00 38.79 2.66
228 229 9.398170 CACCATTTCTGATTTTACAGTACTTTG 57.602 33.333 0.00 0.00 38.79 2.77
229 230 9.131791 ACCATTTCTGATTTTACAGTACTTTGT 57.868 29.630 0.00 0.00 38.79 2.83
230 231 9.398170 CCATTTCTGATTTTACAGTACTTTGTG 57.602 33.333 0.00 0.00 38.79 3.33
231 232 9.398170 CATTTCTGATTTTACAGTACTTTGTGG 57.602 33.333 0.00 0.00 38.79 4.17
232 233 6.554334 TCTGATTTTACAGTACTTTGTGGC 57.446 37.500 0.00 0.00 38.79 5.01
233 234 5.472137 TCTGATTTTACAGTACTTTGTGGCC 59.528 40.000 0.00 0.00 38.79 5.36
234 235 5.381757 TGATTTTACAGTACTTTGTGGCCT 58.618 37.500 3.32 0.00 32.56 5.19
235 236 5.472137 TGATTTTACAGTACTTTGTGGCCTC 59.528 40.000 3.32 0.00 32.56 4.70
236 237 4.425180 TTTACAGTACTTTGTGGCCTCA 57.575 40.909 3.32 2.96 32.56 3.86
237 238 4.634012 TTACAGTACTTTGTGGCCTCAT 57.366 40.909 8.61 0.00 32.56 2.90
238 239 5.748670 TTACAGTACTTTGTGGCCTCATA 57.251 39.130 8.61 2.85 32.56 2.15
239 240 4.207891 ACAGTACTTTGTGGCCTCATAG 57.792 45.455 19.72 19.72 0.00 2.23
240 241 2.939103 CAGTACTTTGTGGCCTCATAGC 59.061 50.000 20.83 9.17 0.00 2.97
241 242 2.571653 AGTACTTTGTGGCCTCATAGCA 59.428 45.455 20.83 9.15 0.00 3.49
242 243 2.814805 ACTTTGTGGCCTCATAGCAT 57.185 45.000 20.83 4.36 0.00 3.79
243 244 2.372264 ACTTTGTGGCCTCATAGCATG 58.628 47.619 20.83 6.81 0.00 4.06
244 245 1.679680 CTTTGTGGCCTCATAGCATGG 59.320 52.381 8.61 0.00 0.00 3.66
245 246 0.918258 TTGTGGCCTCATAGCATGGA 59.082 50.000 8.61 0.00 0.00 3.41
246 247 1.142936 TGTGGCCTCATAGCATGGAT 58.857 50.000 3.32 0.00 0.00 3.41
247 248 1.072806 TGTGGCCTCATAGCATGGATC 59.927 52.381 3.32 0.00 0.00 3.36
248 249 1.072806 GTGGCCTCATAGCATGGATCA 59.927 52.381 3.32 0.00 0.00 2.92
249 250 1.776063 TGGCCTCATAGCATGGATCAA 59.224 47.619 3.32 0.00 0.00 2.57
250 251 2.224695 TGGCCTCATAGCATGGATCAAG 60.225 50.000 3.32 0.00 0.00 3.02
251 252 2.039480 GGCCTCATAGCATGGATCAAGA 59.961 50.000 0.00 0.00 0.00 3.02
252 253 3.497405 GGCCTCATAGCATGGATCAAGAA 60.497 47.826 0.00 0.00 0.00 2.52
253 254 4.139786 GCCTCATAGCATGGATCAAGAAA 58.860 43.478 0.00 0.00 0.00 2.52
254 255 4.765856 GCCTCATAGCATGGATCAAGAAAT 59.234 41.667 0.00 0.00 0.00 2.17
255 256 5.942236 GCCTCATAGCATGGATCAAGAAATA 59.058 40.000 0.00 0.00 0.00 1.40
256 257 6.128063 GCCTCATAGCATGGATCAAGAAATAC 60.128 42.308 0.00 0.00 0.00 1.89
257 258 6.373774 CCTCATAGCATGGATCAAGAAATACC 59.626 42.308 0.00 0.00 0.00 2.73
258 259 6.840527 TCATAGCATGGATCAAGAAATACCA 58.159 36.000 0.00 0.00 35.09 3.25
259 260 7.464273 TCATAGCATGGATCAAGAAATACCAT 58.536 34.615 0.00 0.00 41.25 3.55
260 261 8.605065 TCATAGCATGGATCAAGAAATACCATA 58.395 33.333 0.00 0.00 38.99 2.74
261 262 9.404848 CATAGCATGGATCAAGAAATACCATAT 57.595 33.333 0.00 0.00 38.99 1.78
262 263 7.934855 AGCATGGATCAAGAAATACCATATC 57.065 36.000 0.00 0.00 38.99 1.63
263 264 7.464273 AGCATGGATCAAGAAATACCATATCA 58.536 34.615 0.00 0.00 38.99 2.15
264 265 7.946219 AGCATGGATCAAGAAATACCATATCAA 59.054 33.333 0.00 0.00 38.99 2.57
265 266 8.025445 GCATGGATCAAGAAATACCATATCAAC 58.975 37.037 0.00 0.00 38.99 3.18
266 267 9.070179 CATGGATCAAGAAATACCATATCAACA 57.930 33.333 0.00 0.00 38.99 3.33
267 268 8.681486 TGGATCAAGAAATACCATATCAACAG 57.319 34.615 0.00 0.00 0.00 3.16
268 269 7.720957 TGGATCAAGAAATACCATATCAACAGG 59.279 37.037 0.00 0.00 0.00 4.00
269 270 6.942532 TCAAGAAATACCATATCAACAGGC 57.057 37.500 0.00 0.00 0.00 4.85
270 271 6.422333 TCAAGAAATACCATATCAACAGGCA 58.578 36.000 0.00 0.00 0.00 4.75
271 272 6.889177 TCAAGAAATACCATATCAACAGGCAA 59.111 34.615 0.00 0.00 0.00 4.52
275 276 2.356135 ACCATATCAACAGGCAACGAC 58.644 47.619 0.00 0.00 46.39 4.34
277 278 2.945008 CCATATCAACAGGCAACGACAT 59.055 45.455 0.00 0.00 46.39 3.06
282 283 1.732259 CAACAGGCAACGACATAGGTC 59.268 52.381 0.00 0.00 46.39 3.85
288 289 1.359848 CAACGACATAGGTCTGTGCC 58.640 55.000 5.91 0.00 42.05 5.01
297 298 0.036952 AGGTCTGTGCCATTCTGACG 60.037 55.000 0.00 0.00 35.58 4.35
301 302 1.067565 TCTGTGCCATTCTGACGTCTC 60.068 52.381 17.92 0.00 0.00 3.36
312 313 0.904865 TGACGTCTCTGCCCCTCAAT 60.905 55.000 17.92 0.00 0.00 2.57
313 314 0.179097 GACGTCTCTGCCCCTCAATC 60.179 60.000 8.70 0.00 0.00 2.67
315 316 0.250234 CGTCTCTGCCCCTCAATCAA 59.750 55.000 0.00 0.00 0.00 2.57
316 317 1.339055 CGTCTCTGCCCCTCAATCAAA 60.339 52.381 0.00 0.00 0.00 2.69
317 318 2.087646 GTCTCTGCCCCTCAATCAAAC 58.912 52.381 0.00 0.00 0.00 2.93
318 319 1.704628 TCTCTGCCCCTCAATCAAACA 59.295 47.619 0.00 0.00 0.00 2.83
319 320 2.089980 CTCTGCCCCTCAATCAAACAG 58.910 52.381 0.00 0.00 0.00 3.16
329 330 6.406849 CCCCTCAATCAAACAGAAAAACAGAA 60.407 38.462 0.00 0.00 0.00 3.02
331 332 7.010460 CCCTCAATCAAACAGAAAAACAGAAAC 59.990 37.037 0.00 0.00 0.00 2.78
374 375 2.734606 CGAGCATTTCAACGAACACCTA 59.265 45.455 0.00 0.00 0.00 3.08
406 407 3.651803 CGAAGCCCAGACCTAGATAAG 57.348 52.381 0.00 0.00 0.00 1.73
407 408 2.288518 CGAAGCCCAGACCTAGATAAGC 60.289 54.545 0.00 0.00 0.00 3.09
408 409 2.478872 AGCCCAGACCTAGATAAGCA 57.521 50.000 0.00 0.00 0.00 3.91
410 411 2.043227 GCCCAGACCTAGATAAGCACT 58.957 52.381 0.00 0.00 0.00 4.40
424 425 0.381089 AGCACTACTACATCGACCGC 59.619 55.000 0.00 0.00 0.00 5.68
465 466 2.672996 CAAGGTTGGACGCAGGGG 60.673 66.667 0.00 0.00 0.00 4.79
546 547 1.215647 GACTCGGTCCATTGCTCGT 59.784 57.895 0.00 0.00 0.00 4.18
551 552 1.212751 GGTCCATTGCTCGTTTGCC 59.787 57.895 0.00 0.00 0.00 4.52
593 594 2.124983 CGGTGGATCAGCCTGTGG 60.125 66.667 0.00 0.00 37.63 4.17
600 601 0.247736 GATCAGCCTGTGGACGAACT 59.752 55.000 0.00 0.00 0.00 3.01
611 612 2.181021 ACGAACTGGCGTCGGATC 59.819 61.111 0.98 0.00 41.22 3.36
612 613 2.341101 ACGAACTGGCGTCGGATCT 61.341 57.895 0.98 0.00 41.22 2.75
613 614 1.586564 CGAACTGGCGTCGGATCTC 60.587 63.158 0.98 0.00 0.00 2.75
616 617 4.271816 CTGGCGTCGGATCTCGGG 62.272 72.222 0.00 0.00 39.77 5.14
619 620 4.933064 GCGTCGGATCTCGGGCAG 62.933 72.222 0.00 0.00 38.14 4.85
620 621 3.209812 CGTCGGATCTCGGGCAGA 61.210 66.667 0.00 0.00 39.77 4.26
622 623 3.219928 TCGGATCTCGGGCAGAGC 61.220 66.667 9.97 0.00 46.44 4.09
623 624 3.222855 CGGATCTCGGGCAGAGCT 61.223 66.667 9.97 0.00 46.44 4.09
624 625 2.420890 GGATCTCGGGCAGAGCTG 59.579 66.667 9.97 0.00 46.44 4.24
626 627 2.042537 ATCTCGGGCAGAGCTGGA 60.043 61.111 9.97 0.00 46.44 3.86
627 628 1.459158 ATCTCGGGCAGAGCTGGAT 60.459 57.895 9.97 0.00 46.44 3.41
628 629 1.756408 ATCTCGGGCAGAGCTGGATG 61.756 60.000 9.97 0.00 46.44 3.51
629 630 2.685017 TCGGGCAGAGCTGGATGT 60.685 61.111 0.00 0.00 0.00 3.06
630 631 2.202987 CGGGCAGAGCTGGATGTC 60.203 66.667 0.00 0.00 0.00 3.06
631 632 2.993008 GGGCAGAGCTGGATGTCA 59.007 61.111 0.00 0.00 0.00 3.58
632 633 1.451028 GGGCAGAGCTGGATGTCAC 60.451 63.158 0.00 0.00 0.00 3.67
777 781 2.755655 TCTTTCTGGTCTCGGTCTCATC 59.244 50.000 0.00 0.00 0.00 2.92
778 782 1.475403 TTCTGGTCTCGGTCTCATCC 58.525 55.000 0.00 0.00 0.00 3.51
779 783 0.395862 TCTGGTCTCGGTCTCATCCC 60.396 60.000 0.00 0.00 0.00 3.85
780 784 0.396417 CTGGTCTCGGTCTCATCCCT 60.396 60.000 0.00 0.00 0.00 4.20
781 785 0.684479 TGGTCTCGGTCTCATCCCTG 60.684 60.000 0.00 0.00 0.00 4.45
1017 1040 1.195115 CGATGGAGAAGGGGAAGTCA 58.805 55.000 0.00 0.00 0.00 3.41
1120 1143 1.943507 GCTTCTGTGAGCTCCCTGTTC 60.944 57.143 12.15 0.00 39.57 3.18
1135 1158 3.118223 CCCTGTTCCTCTTCCCTGTAATC 60.118 52.174 0.00 0.00 0.00 1.75
1201 1236 7.415592 TGGTTGCATATCATTCATTGGTTTA 57.584 32.000 0.00 0.00 0.00 2.01
1202 1237 8.020777 TGGTTGCATATCATTCATTGGTTTAT 57.979 30.769 0.00 0.00 0.00 1.40
1203 1238 9.140874 TGGTTGCATATCATTCATTGGTTTATA 57.859 29.630 0.00 0.00 0.00 0.98
1204 1239 9.979578 GGTTGCATATCATTCATTGGTTTATAA 57.020 29.630 0.00 0.00 0.00 0.98
1239 1274 5.537188 CTTAGGGTCTGCATAATCAGAGTC 58.463 45.833 0.00 0.00 43.10 3.36
1246 1292 2.693074 TGCATAATCAGAGTCCGTGCTA 59.307 45.455 0.00 0.00 32.67 3.49
1248 1294 3.923461 GCATAATCAGAGTCCGTGCTATC 59.077 47.826 0.00 0.00 0.00 2.08
1254 1300 3.764434 TCAGAGTCCGTGCTATCTTCTTT 59.236 43.478 0.00 0.00 0.00 2.52
1297 1343 7.452880 TTTTTGTAGAGATGGGATGTTTCTG 57.547 36.000 0.00 0.00 0.00 3.02
1388 1434 7.226720 TCAACTTTCTGAGATGGTAAAACAGAC 59.773 37.037 0.00 0.00 37.34 3.51
1404 1450 0.976641 AGACGAGGGCATTGTTCTCA 59.023 50.000 0.00 0.00 0.00 3.27
1426 1472 0.819582 GGAAGGTGCAATGGATGTGG 59.180 55.000 0.00 0.00 0.00 4.17
1443 1489 4.066646 TGTGGTTGAAGATTCAGTTCGA 57.933 40.909 0.00 0.00 38.61 3.71
1469 1518 1.583054 CATTAGTGGCTAGGCGGAAC 58.417 55.000 12.19 4.45 0.00 3.62
1496 1545 7.201384 GCTTAATAAGTTTCATCTTGCAGCAAC 60.201 37.037 2.83 0.00 0.00 4.17
1604 1656 7.658167 TGAGTTAATTCATTGACGTTGACCTTA 59.342 33.333 0.00 0.00 32.24 2.69
1612 1664 3.921677 TGACGTTGACCTTAATCCAGTC 58.078 45.455 0.00 0.00 0.00 3.51
1657 1712 9.884465 CTGAGTTCTGTTTCTTGTTATTTTAGG 57.116 33.333 0.00 0.00 0.00 2.69
1668 1723 9.616156 TTCTTGTTATTTTAGGTTGTACTGTGA 57.384 29.630 0.00 0.00 0.00 3.58
1858 1916 6.094881 CCACCACACATAAAGGTACCTATTTG 59.905 42.308 16.67 14.71 33.49 2.32
1859 1917 6.094881 CACCACACATAAAGGTACCTATTTGG 59.905 42.308 16.67 16.07 36.13 3.28
1864 1922 7.993183 ACACATAAAGGTACCTATTTGGATCTG 59.007 37.037 16.67 9.18 39.71 2.90
1876 1934 0.037326 TGGATCTGTGGTCAGCGTTC 60.037 55.000 0.00 0.00 41.10 3.95
1894 1952 3.438360 GTTCTTGCCTTAATGCCGAATG 58.562 45.455 0.00 0.00 0.00 2.67
1986 2047 2.532250 AGAAAGTAAGCCATTGGGGG 57.468 50.000 4.53 0.00 37.04 5.40
1993 2054 2.043307 AAGCCATTGGGGGAAATGTT 57.957 45.000 4.53 0.00 36.06 2.71
2011 2072 7.362401 GGAAATGTTCTGTTCGTCTAGGTAGTA 60.362 40.741 0.00 0.00 0.00 1.82
2070 2131 9.046296 GTAGGAGGAACAATGTATGTATTCTTG 57.954 37.037 0.00 0.00 42.99 3.02
2078 2139 9.911788 AACAATGTATGTATTCTTGAAGGAGAT 57.088 29.630 0.00 0.00 42.99 2.75
2145 2206 2.434336 TGTGCCTGCCAGTACTATTAGG 59.566 50.000 12.00 12.00 0.00 2.69
2151 2212 5.598769 CCTGCCAGTACTATTAGGTTACAC 58.401 45.833 0.00 0.00 0.00 2.90
2152 2213 5.363005 CCTGCCAGTACTATTAGGTTACACT 59.637 44.000 0.00 0.00 0.00 3.55
2183 2540 4.581868 TGTTATTCCTTTTAGACGGTGGG 58.418 43.478 0.00 0.00 0.00 4.61
2240 2597 9.289782 ACAGTCTCTTTCTGCTTTATTTGTAAT 57.710 29.630 0.00 0.00 36.50 1.89
2274 2631 6.403866 TGGAAATGTATTCAAGCAACACTT 57.596 33.333 0.00 0.00 40.05 3.16
2348 2706 7.492524 TGAGGTAAATAGCACAGAAGACATAG 58.507 38.462 0.00 0.00 0.00 2.23
2520 2881 2.880268 TGATGTTCAGTTCAAGTGCCAG 59.120 45.455 0.00 0.00 0.00 4.85
2576 2948 2.353889 CTGCATATCCTCAACACACTGC 59.646 50.000 0.00 0.00 0.00 4.40
2666 3038 6.682423 TGATACAGTTGGCAATTATGTCTG 57.318 37.500 15.87 13.31 30.51 3.51
2695 3067 7.507829 CAAGGAGGAGAAGATTACTGAATGAT 58.492 38.462 0.00 0.00 0.00 2.45
2787 3159 2.749682 CCTGGCTACTGTGGCACA 59.250 61.111 20.76 20.76 37.59 4.57
2838 3210 1.848652 AGGTAAGCTTCGGTGCTCTA 58.151 50.000 0.00 0.00 43.24 2.43
2876 3248 5.023533 TGTGAAAGCTAAACAGACAGTCT 57.976 39.130 0.00 0.00 0.00 3.24
2877 3249 6.156748 TGTGAAAGCTAAACAGACAGTCTA 57.843 37.500 1.67 0.00 0.00 2.59
3023 3395 3.705579 TGACCCCCAATTAAATGCATCTG 59.294 43.478 0.00 0.00 0.00 2.90
3148 3520 6.591062 TGCCATGTTTTTGCATCTATTCTTTC 59.409 34.615 0.00 0.00 0.00 2.62
3241 3843 3.896888 TCAGTCCCATGAAACTTGCAAAT 59.103 39.130 0.00 0.00 0.00 2.32
3284 3887 4.504097 GTGTTGGAGTTGCTGAAATCAAAC 59.496 41.667 0.00 0.00 39.54 2.93
3346 3949 7.561021 TGTGTAACTGACAATTAGCAAAAGA 57.439 32.000 0.00 0.00 40.66 2.52
3429 4033 5.464057 CCGTGTGTGTTCTCTGTAAACATTA 59.536 40.000 0.00 0.00 38.75 1.90
3437 4042 8.770828 GTGTTCTCTGTAAACATTAAGTTGCTA 58.229 33.333 0.00 0.00 41.19 3.49
3487 4092 7.015226 TGAAAAATAGATTGTCCTACATGCG 57.985 36.000 0.00 0.00 0.00 4.73
3532 4217 6.635755 AGGTAGTTGTTATTTGCTCTCTCTC 58.364 40.000 0.00 0.00 0.00 3.20
3533 4218 6.439058 AGGTAGTTGTTATTTGCTCTCTCTCT 59.561 38.462 0.00 0.00 0.00 3.10
3534 4219 6.754675 GGTAGTTGTTATTTGCTCTCTCTCTC 59.245 42.308 0.00 0.00 0.00 3.20
3535 4220 6.603940 AGTTGTTATTTGCTCTCTCTCTCT 57.396 37.500 0.00 0.00 0.00 3.10
3536 4221 6.630071 AGTTGTTATTTGCTCTCTCTCTCTC 58.370 40.000 0.00 0.00 0.00 3.20
3537 4222 6.437162 AGTTGTTATTTGCTCTCTCTCTCTCT 59.563 38.462 0.00 0.00 0.00 3.10
3538 4223 6.449635 TGTTATTTGCTCTCTCTCTCTCTC 57.550 41.667 0.00 0.00 0.00 3.20
3539 4224 6.186957 TGTTATTTGCTCTCTCTCTCTCTCT 58.813 40.000 0.00 0.00 0.00 3.10
3540 4225 6.318648 TGTTATTTGCTCTCTCTCTCTCTCTC 59.681 42.308 0.00 0.00 0.00 3.20
3541 4226 4.574674 TTTGCTCTCTCTCTCTCTCTCT 57.425 45.455 0.00 0.00 0.00 3.10
3542 4227 3.827008 TGCTCTCTCTCTCTCTCTCTC 57.173 52.381 0.00 0.00 0.00 3.20
3543 4228 3.378512 TGCTCTCTCTCTCTCTCTCTCT 58.621 50.000 0.00 0.00 0.00 3.10
3544 4229 3.386078 TGCTCTCTCTCTCTCTCTCTCTC 59.614 52.174 0.00 0.00 0.00 3.20
3545 4230 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
3546 4231 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
3547 4232 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
3548 4233 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3549 4234 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3550 4235 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3551 4236 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3552 4237 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3553 4238 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3554 4239 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3555 4240 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3556 4241 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3557 4242 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3558 4243 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3559 4244 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3560 4245 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3561 4246 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3562 4247 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3563 4248 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3564 4249 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3565 4250 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3566 4251 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3567 4252 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3575 4260 2.705658 CTCTCTCTCTCTCTCCCTGCTA 59.294 54.545 0.00 0.00 0.00 3.49
3608 4293 7.213216 TGTAGCTTTCAATTTGACTGCATAA 57.787 32.000 18.80 3.25 30.49 1.90
3615 4300 8.854979 TTTCAATTTGACTGCATAATATTCCG 57.145 30.769 0.00 0.00 0.00 4.30
3838 4523 6.770303 AGTTCTCTCGTCTCTGAATGATGATA 59.230 38.462 0.00 0.00 0.00 2.15
3894 4579 8.854979 TTATGTTTCATCTTTTGTGTGTCTTG 57.145 30.769 0.00 0.00 0.00 3.02
3942 4627 4.081862 TCGAAGGAAATTCTCGCCTTAGAA 60.082 41.667 0.00 0.00 41.85 2.10
4024 4709 1.042229 AAGTGAAGCATTGGCAAGCA 58.958 45.000 19.03 5.31 44.61 3.91
4062 4747 3.181455 CCGTGGTGGAAGATATTGATCCA 60.181 47.826 0.00 2.02 42.00 3.41
4116 4801 2.745492 GCTGCTGCTCCACCTCAC 60.745 66.667 8.53 0.00 36.03 3.51
4122 4807 0.890996 CTGCTCCACCTCACCCAAAC 60.891 60.000 0.00 0.00 0.00 2.93
4182 4867 1.065928 GTATGTGGAGAGGGACGCG 59.934 63.158 3.53 3.53 0.00 6.01
4315 5000 4.787871 GCAAGGGCTAGCGATGAT 57.212 55.556 9.00 0.00 36.96 2.45
4335 5020 1.827969 TGGTCCTTGTGTTGTTTTGGG 59.172 47.619 0.00 0.00 0.00 4.12
4364 5049 8.440833 GTTGTATGTATCAGTGGTTGTCTAAAC 58.559 37.037 0.00 0.00 0.00 2.01
4382 5067 6.264518 GTCTAAACACAAGGGAAGAAATTCCA 59.735 38.462 9.13 0.00 42.89 3.53
4383 5068 4.937201 AACACAAGGGAAGAAATTCCAC 57.063 40.909 9.13 0.00 42.89 4.02
4384 5069 3.909732 ACACAAGGGAAGAAATTCCACA 58.090 40.909 9.13 0.00 42.89 4.17
4385 5070 3.891366 ACACAAGGGAAGAAATTCCACAG 59.109 43.478 9.13 0.93 42.89 3.66
4389 5074 5.302823 ACAAGGGAAGAAATTCCACAGAAAG 59.697 40.000 9.13 0.00 42.89 2.62
4393 5078 6.611236 AGGGAAGAAATTCCACAGAAAGAAAA 59.389 34.615 9.13 0.00 42.89 2.29
4404 5094 5.351458 CACAGAAAGAAAAACAAGGGAAGG 58.649 41.667 0.00 0.00 0.00 3.46
4408 5098 7.092891 ACAGAAAGAAAAACAAGGGAAGGAATT 60.093 33.333 0.00 0.00 0.00 2.17
4409 5099 7.770433 CAGAAAGAAAAACAAGGGAAGGAATTT 59.230 33.333 0.00 0.00 0.00 1.82
4412 5102 6.957631 AGAAAAACAAGGGAAGGAATTTTGT 58.042 32.000 0.00 0.00 33.73 2.83
4414 5104 5.948742 AAACAAGGGAAGGAATTTTGTGA 57.051 34.783 0.00 0.00 32.75 3.58
4415 5105 5.948742 AACAAGGGAAGGAATTTTGTGAA 57.051 34.783 0.00 0.00 32.75 3.18
4426 5116 9.313118 GAAGGAATTTTGTGAAGTGTAACAAAT 57.687 29.630 2.17 0.00 43.66 2.32
4433 5123 5.577835 TGTGAAGTGTAACAAATGAACAGC 58.422 37.500 0.00 0.00 41.43 4.40
4459 5149 1.337384 ATATCAGGAGCACGGTGGCA 61.337 55.000 10.60 0.00 35.83 4.92
4529 5220 5.344665 GCTTTGTGCTTGCGATGTTTAATTA 59.655 36.000 0.00 0.00 38.95 1.40
4539 5255 9.502145 CTTGCGATGTTTAATTATGTGTACATT 57.498 29.630 0.00 0.00 37.76 2.71
4540 5256 8.833976 TGCGATGTTTAATTATGTGTACATTG 57.166 30.769 0.00 0.00 37.76 2.82
4541 5257 7.912773 TGCGATGTTTAATTATGTGTACATTGG 59.087 33.333 0.00 0.00 37.76 3.16
4542 5258 7.913297 GCGATGTTTAATTATGTGTACATTGGT 59.087 33.333 0.00 0.00 37.76 3.67
4587 5303 4.933505 TGGTAGAGCAATCAGAGATGAG 57.066 45.455 0.00 0.00 0.00 2.90
4591 5375 4.877378 AGAGCAATCAGAGATGAGGATC 57.123 45.455 0.00 0.00 0.00 3.36
4595 5379 4.066490 GCAATCAGAGATGAGGATCCAAG 58.934 47.826 15.82 0.00 0.00 3.61
4603 5387 4.712476 AGATGAGGATCCAAGCATTACAC 58.288 43.478 15.82 3.07 0.00 2.90
4634 5418 5.752036 TCAGAGATCAAGACCACAGATTT 57.248 39.130 0.00 0.00 0.00 2.17
4707 5492 4.074970 CAAGGTTGCACTTCCTACATCTT 58.925 43.478 4.95 0.00 33.27 2.40
4708 5493 3.679389 AGGTTGCACTTCCTACATCTTG 58.321 45.455 2.87 0.00 31.66 3.02
4732 5517 4.590850 AAAAGTTGCAGCTCCTAAAAGG 57.409 40.909 2.60 0.00 36.46 3.11
4761 5551 7.488322 AGAAAGAAGCATCTACACAGATCTAC 58.512 38.462 0.00 0.00 39.62 2.59
4769 5559 0.456221 ACACAGATCTACCGAAGCCG 59.544 55.000 0.00 0.00 0.00 5.52
4795 5598 1.600957 CACAGCAGTTGGTCTTCAGTG 59.399 52.381 0.00 0.00 0.00 3.66
4796 5599 1.233019 CAGCAGTTGGTCTTCAGTGG 58.767 55.000 0.00 0.00 0.00 4.00
4845 5684 3.126879 CGAAAGCATCCCGCAGCA 61.127 61.111 0.00 0.00 46.13 4.41
4846 5685 2.796651 GAAAGCATCCCGCAGCAG 59.203 61.111 0.00 0.00 46.13 4.24
4847 5686 3.407046 GAAAGCATCCCGCAGCAGC 62.407 63.158 0.00 0.00 46.13 5.25
4848 5687 4.728110 AAGCATCCCGCAGCAGCA 62.728 61.111 0.82 0.00 46.13 4.41
4851 5690 3.506096 CATCCCGCAGCAGCAGTG 61.506 66.667 0.82 0.00 42.27 3.66
4852 5691 4.790962 ATCCCGCAGCAGCAGTGG 62.791 66.667 10.43 10.43 42.27 4.00
4871 5710 4.056125 CAGCGGCACAGGAGTCGA 62.056 66.667 1.45 0.00 0.00 4.20
4872 5711 4.057428 AGCGGCACAGGAGTCGAC 62.057 66.667 7.70 7.70 0.00 4.20
4874 5713 4.778415 CGGCACAGGAGTCGACCG 62.778 72.222 13.01 1.66 34.73 4.79
4875 5714 4.436998 GGCACAGGAGTCGACCGG 62.437 72.222 13.01 0.00 34.73 5.28
4877 5716 4.436998 CACAGGAGTCGACCGGCC 62.437 72.222 13.01 11.67 34.73 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.592196 AGGCCATATTAGAATAATGAATTGTGT 57.408 29.630 5.01 0.00 0.00 3.72
5 6 9.850628 CAGGCCATATTAGAATAATGAATTGTG 57.149 33.333 5.01 0.00 0.00 3.33
6 7 8.526147 GCAGGCCATATTAGAATAATGAATTGT 58.474 33.333 5.01 0.00 0.00 2.71
7 8 8.525316 TGCAGGCCATATTAGAATAATGAATTG 58.475 33.333 5.01 0.00 0.00 2.32
8 9 8.526147 GTGCAGGCCATATTAGAATAATGAATT 58.474 33.333 5.01 0.00 0.00 2.17
9 10 7.670979 TGTGCAGGCCATATTAGAATAATGAAT 59.329 33.333 5.01 0.00 0.00 2.57
10 11 7.003482 TGTGCAGGCCATATTAGAATAATGAA 58.997 34.615 5.01 0.00 0.00 2.57
11 12 6.541907 TGTGCAGGCCATATTAGAATAATGA 58.458 36.000 5.01 0.00 0.00 2.57
12 13 6.822667 TGTGCAGGCCATATTAGAATAATG 57.177 37.500 5.01 0.00 0.00 1.90
13 14 7.408543 AGATGTGCAGGCCATATTAGAATAAT 58.591 34.615 5.01 0.00 0.00 1.28
14 15 6.782986 AGATGTGCAGGCCATATTAGAATAA 58.217 36.000 5.01 0.00 0.00 1.40
15 16 6.013466 TGAGATGTGCAGGCCATATTAGAATA 60.013 38.462 5.01 0.00 0.00 1.75
16 17 5.221986 TGAGATGTGCAGGCCATATTAGAAT 60.222 40.000 5.01 0.00 0.00 2.40
17 18 4.102996 TGAGATGTGCAGGCCATATTAGAA 59.897 41.667 5.01 0.00 0.00 2.10
18 19 3.647590 TGAGATGTGCAGGCCATATTAGA 59.352 43.478 5.01 0.00 0.00 2.10
19 20 3.750130 GTGAGATGTGCAGGCCATATTAG 59.250 47.826 5.01 0.00 0.00 1.73
20 21 3.136260 TGTGAGATGTGCAGGCCATATTA 59.864 43.478 5.01 0.00 0.00 0.98
21 22 2.092267 TGTGAGATGTGCAGGCCATATT 60.092 45.455 5.01 0.00 0.00 1.28
22 23 1.491754 TGTGAGATGTGCAGGCCATAT 59.508 47.619 5.01 0.00 0.00 1.78
23 24 0.911053 TGTGAGATGTGCAGGCCATA 59.089 50.000 5.01 0.00 0.00 2.74
24 25 0.393944 CTGTGAGATGTGCAGGCCAT 60.394 55.000 5.01 0.00 0.00 4.40
25 26 1.002990 CTGTGAGATGTGCAGGCCA 60.003 57.895 5.01 0.00 0.00 5.36
26 27 1.748122 CCTGTGAGATGTGCAGGCC 60.748 63.158 0.00 0.00 42.54 5.19
27 28 0.107312 ATCCTGTGAGATGTGCAGGC 60.107 55.000 5.05 0.00 46.82 4.85
29 30 2.708051 ACAATCCTGTGAGATGTGCAG 58.292 47.619 0.00 0.00 33.30 4.41
30 31 2.865119 ACAATCCTGTGAGATGTGCA 57.135 45.000 0.00 0.00 33.30 4.57
31 32 2.939103 GGTACAATCCTGTGAGATGTGC 59.061 50.000 0.00 0.00 36.96 4.57
32 33 4.206477 TGGTACAATCCTGTGAGATGTG 57.794 45.455 0.00 0.00 36.96 3.21
56 57 3.611025 TCCTCAACCATCACCCTTTTT 57.389 42.857 0.00 0.00 0.00 1.94
57 58 3.230976 GTTCCTCAACCATCACCCTTTT 58.769 45.455 0.00 0.00 0.00 2.27
58 59 2.176798 TGTTCCTCAACCATCACCCTTT 59.823 45.455 0.00 0.00 0.00 3.11
59 60 1.780309 TGTTCCTCAACCATCACCCTT 59.220 47.619 0.00 0.00 0.00 3.95
60 61 1.444933 TGTTCCTCAACCATCACCCT 58.555 50.000 0.00 0.00 0.00 4.34
61 62 2.094675 CATGTTCCTCAACCATCACCC 58.905 52.381 0.00 0.00 0.00 4.61
62 63 2.749621 GTCATGTTCCTCAACCATCACC 59.250 50.000 0.00 0.00 0.00 4.02
63 64 3.411446 TGTCATGTTCCTCAACCATCAC 58.589 45.455 0.00 0.00 0.00 3.06
64 65 3.072915 ACTGTCATGTTCCTCAACCATCA 59.927 43.478 0.00 0.00 0.00 3.07
65 66 3.679389 ACTGTCATGTTCCTCAACCATC 58.321 45.455 0.00 0.00 0.00 3.51
66 67 3.795688 ACTGTCATGTTCCTCAACCAT 57.204 42.857 0.00 0.00 0.00 3.55
67 68 3.901222 TCTACTGTCATGTTCCTCAACCA 59.099 43.478 0.00 0.00 0.00 3.67
68 69 4.499183 CTCTACTGTCATGTTCCTCAACC 58.501 47.826 0.00 0.00 0.00 3.77
69 70 3.929610 GCTCTACTGTCATGTTCCTCAAC 59.070 47.826 0.00 0.00 0.00 3.18
70 71 3.578282 TGCTCTACTGTCATGTTCCTCAA 59.422 43.478 0.00 0.00 0.00 3.02
71 72 3.165071 TGCTCTACTGTCATGTTCCTCA 58.835 45.455 0.00 0.00 0.00 3.86
72 73 3.876274 TGCTCTACTGTCATGTTCCTC 57.124 47.619 0.00 0.00 0.00 3.71
73 74 3.580458 AGTTGCTCTACTGTCATGTTCCT 59.420 43.478 0.00 0.00 0.00 3.36
74 75 3.681897 CAGTTGCTCTACTGTCATGTTCC 59.318 47.826 3.82 0.00 40.48 3.62
75 76 4.560128 TCAGTTGCTCTACTGTCATGTTC 58.440 43.478 10.33 0.00 44.62 3.18
76 77 4.607293 TCAGTTGCTCTACTGTCATGTT 57.393 40.909 10.33 0.00 44.62 2.71
77 78 4.562347 CCTTCAGTTGCTCTACTGTCATGT 60.562 45.833 10.33 0.00 44.62 3.21
78 79 3.931468 CCTTCAGTTGCTCTACTGTCATG 59.069 47.826 10.33 0.00 44.62 3.07
79 80 3.618507 GCCTTCAGTTGCTCTACTGTCAT 60.619 47.826 10.33 0.00 44.62 3.06
80 81 2.289072 GCCTTCAGTTGCTCTACTGTCA 60.289 50.000 10.33 0.70 44.62 3.58
81 82 2.342179 GCCTTCAGTTGCTCTACTGTC 58.658 52.381 10.33 0.00 44.62 3.51
82 83 1.002544 GGCCTTCAGTTGCTCTACTGT 59.997 52.381 10.33 0.00 44.62 3.55
83 84 1.277557 AGGCCTTCAGTTGCTCTACTG 59.722 52.381 0.00 5.34 45.46 2.74
84 85 1.650528 AGGCCTTCAGTTGCTCTACT 58.349 50.000 0.00 0.00 0.00 2.57
85 86 2.498078 ACTAGGCCTTCAGTTGCTCTAC 59.502 50.000 12.58 0.00 0.00 2.59
86 87 2.497675 CACTAGGCCTTCAGTTGCTCTA 59.502 50.000 12.58 0.00 0.00 2.43
87 88 1.277557 CACTAGGCCTTCAGTTGCTCT 59.722 52.381 12.58 0.00 0.00 4.09
88 89 1.002544 ACACTAGGCCTTCAGTTGCTC 59.997 52.381 12.58 0.00 0.00 4.26
89 90 1.059913 ACACTAGGCCTTCAGTTGCT 58.940 50.000 12.58 0.00 0.00 3.91
90 91 1.160137 CACACTAGGCCTTCAGTTGC 58.840 55.000 12.58 0.00 0.00 4.17
91 92 1.160137 GCACACTAGGCCTTCAGTTG 58.840 55.000 12.58 11.38 0.00 3.16
92 93 1.059913 AGCACACTAGGCCTTCAGTT 58.940 50.000 12.58 0.00 0.00 3.16
93 94 1.059913 AAGCACACTAGGCCTTCAGT 58.940 50.000 12.58 6.43 0.00 3.41
94 95 3.334583 TTAAGCACACTAGGCCTTCAG 57.665 47.619 12.58 5.58 0.00 3.02
95 96 3.609853 CATTAAGCACACTAGGCCTTCA 58.390 45.455 12.58 0.00 0.00 3.02
96 97 2.356069 GCATTAAGCACACTAGGCCTTC 59.644 50.000 12.58 0.00 44.79 3.46
97 98 2.369394 GCATTAAGCACACTAGGCCTT 58.631 47.619 12.58 0.00 44.79 4.35
98 99 2.044123 GCATTAAGCACACTAGGCCT 57.956 50.000 11.78 11.78 44.79 5.19
109 110 4.567959 GTGAATGTGATTTGGGCATTAAGC 59.432 41.667 0.00 0.00 44.65 3.09
110 111 5.722263 TGTGAATGTGATTTGGGCATTAAG 58.278 37.500 0.00 0.00 33.56 1.85
111 112 5.735285 TGTGAATGTGATTTGGGCATTAA 57.265 34.783 0.00 0.00 33.56 1.40
112 113 5.657745 AGATGTGAATGTGATTTGGGCATTA 59.342 36.000 0.00 0.00 33.56 1.90
113 114 4.468510 AGATGTGAATGTGATTTGGGCATT 59.531 37.500 0.00 0.00 35.78 3.56
114 115 4.028131 AGATGTGAATGTGATTTGGGCAT 58.972 39.130 0.00 0.00 0.00 4.40
115 116 3.433343 AGATGTGAATGTGATTTGGGCA 58.567 40.909 0.00 0.00 0.00 5.36
116 117 5.300034 TCATAGATGTGAATGTGATTTGGGC 59.700 40.000 0.00 0.00 0.00 5.36
117 118 6.544931 ACTCATAGATGTGAATGTGATTTGGG 59.455 38.462 0.00 0.00 0.00 4.12
118 119 7.563888 ACTCATAGATGTGAATGTGATTTGG 57.436 36.000 0.00 0.00 0.00 3.28
119 120 9.926751 GTAACTCATAGATGTGAATGTGATTTG 57.073 33.333 0.00 0.00 0.00 2.32
120 121 9.896645 AGTAACTCATAGATGTGAATGTGATTT 57.103 29.630 0.00 0.00 0.00 2.17
123 124 9.971922 CATAGTAACTCATAGATGTGAATGTGA 57.028 33.333 0.00 0.00 0.00 3.58
124 125 9.201127 CCATAGTAACTCATAGATGTGAATGTG 57.799 37.037 0.00 0.00 0.00 3.21
125 126 8.370940 CCCATAGTAACTCATAGATGTGAATGT 58.629 37.037 0.00 0.00 0.00 2.71
126 127 7.821359 CCCCATAGTAACTCATAGATGTGAATG 59.179 40.741 0.00 0.00 0.00 2.67
127 128 7.038017 CCCCCATAGTAACTCATAGATGTGAAT 60.038 40.741 0.00 0.00 0.00 2.57
128 129 6.270000 CCCCCATAGTAACTCATAGATGTGAA 59.730 42.308 0.00 0.00 0.00 3.18
129 130 5.780282 CCCCCATAGTAACTCATAGATGTGA 59.220 44.000 0.00 0.00 0.00 3.58
130 131 5.780282 TCCCCCATAGTAACTCATAGATGTG 59.220 44.000 0.00 0.00 0.00 3.21
131 132 5.977533 TCCCCCATAGTAACTCATAGATGT 58.022 41.667 0.00 0.00 0.00 3.06
132 133 6.935240 TTCCCCCATAGTAACTCATAGATG 57.065 41.667 0.00 0.00 0.00 2.90
133 134 7.572861 ACTTTTCCCCCATAGTAACTCATAGAT 59.427 37.037 0.00 0.00 0.00 1.98
134 135 6.906901 ACTTTTCCCCCATAGTAACTCATAGA 59.093 38.462 0.00 0.00 0.00 1.98
135 136 7.138054 ACTTTTCCCCCATAGTAACTCATAG 57.862 40.000 0.00 0.00 0.00 2.23
136 137 7.519347 AACTTTTCCCCCATAGTAACTCATA 57.481 36.000 0.00 0.00 0.00 2.15
137 138 6.402981 AACTTTTCCCCCATAGTAACTCAT 57.597 37.500 0.00 0.00 0.00 2.90
138 139 5.853572 AACTTTTCCCCCATAGTAACTCA 57.146 39.130 0.00 0.00 0.00 3.41
139 140 6.714278 TGTAACTTTTCCCCCATAGTAACTC 58.286 40.000 0.00 0.00 0.00 3.01
140 141 6.707273 TGTAACTTTTCCCCCATAGTAACT 57.293 37.500 0.00 0.00 0.00 2.24
141 142 7.114095 TGATGTAACTTTTCCCCCATAGTAAC 58.886 38.462 0.00 0.00 0.00 2.50
142 143 7.273457 TGATGTAACTTTTCCCCCATAGTAA 57.727 36.000 0.00 0.00 0.00 2.24
143 144 6.894735 TGATGTAACTTTTCCCCCATAGTA 57.105 37.500 0.00 0.00 0.00 1.82
144 145 5.789574 TGATGTAACTTTTCCCCCATAGT 57.210 39.130 0.00 0.00 0.00 2.12
145 146 6.715264 GGTATGATGTAACTTTTCCCCCATAG 59.285 42.308 0.00 0.00 0.00 2.23
146 147 6.160636 TGGTATGATGTAACTTTTCCCCCATA 59.839 38.462 0.00 0.00 0.00 2.74
147 148 5.043732 TGGTATGATGTAACTTTTCCCCCAT 60.044 40.000 0.00 0.00 0.00 4.00
148 149 4.292571 TGGTATGATGTAACTTTTCCCCCA 59.707 41.667 0.00 0.00 0.00 4.96
149 150 4.862371 TGGTATGATGTAACTTTTCCCCC 58.138 43.478 0.00 0.00 0.00 5.40
150 151 5.891551 ACATGGTATGATGTAACTTTTCCCC 59.108 40.000 0.00 0.00 34.69 4.81
151 152 6.039382 GGACATGGTATGATGTAACTTTTCCC 59.961 42.308 0.00 0.00 36.67 3.97
152 153 6.601613 TGGACATGGTATGATGTAACTTTTCC 59.398 38.462 0.00 0.00 36.67 3.13
153 154 7.624360 TGGACATGGTATGATGTAACTTTTC 57.376 36.000 0.00 0.00 36.67 2.29
154 155 9.693739 TTATGGACATGGTATGATGTAACTTTT 57.306 29.630 0.00 0.00 36.67 2.27
155 156 9.342308 CTTATGGACATGGTATGATGTAACTTT 57.658 33.333 0.00 0.00 36.67 2.66
156 157 7.445402 GCTTATGGACATGGTATGATGTAACTT 59.555 37.037 0.00 0.00 36.67 2.66
157 158 6.936900 GCTTATGGACATGGTATGATGTAACT 59.063 38.462 0.00 0.00 36.67 2.24
158 159 6.936900 AGCTTATGGACATGGTATGATGTAAC 59.063 38.462 0.00 0.00 36.67 2.50
159 160 7.078249 AGCTTATGGACATGGTATGATGTAA 57.922 36.000 0.00 0.00 36.67 2.41
160 161 6.269769 TGAGCTTATGGACATGGTATGATGTA 59.730 38.462 0.00 0.00 36.67 2.29
161 162 5.072193 TGAGCTTATGGACATGGTATGATGT 59.928 40.000 0.00 0.00 39.34 3.06
162 163 5.554070 TGAGCTTATGGACATGGTATGATG 58.446 41.667 0.00 0.00 0.00 3.07
163 164 5.280368 CCTGAGCTTATGGACATGGTATGAT 60.280 44.000 0.00 0.00 0.00 2.45
164 165 4.040829 CCTGAGCTTATGGACATGGTATGA 59.959 45.833 0.00 0.00 0.00 2.15
165 166 4.202398 ACCTGAGCTTATGGACATGGTATG 60.202 45.833 0.00 0.00 0.00 2.39
166 167 3.976654 ACCTGAGCTTATGGACATGGTAT 59.023 43.478 0.00 0.00 0.00 2.73
167 168 3.384168 ACCTGAGCTTATGGACATGGTA 58.616 45.455 0.00 0.00 0.00 3.25
168 169 2.200081 ACCTGAGCTTATGGACATGGT 58.800 47.619 0.00 0.00 0.00 3.55
169 170 3.287867 AACCTGAGCTTATGGACATGG 57.712 47.619 0.00 0.00 0.00 3.66
170 171 3.310774 CGAAACCTGAGCTTATGGACATG 59.689 47.826 7.45 0.00 0.00 3.21
171 172 3.055094 ACGAAACCTGAGCTTATGGACAT 60.055 43.478 7.45 0.00 0.00 3.06
172 173 2.301870 ACGAAACCTGAGCTTATGGACA 59.698 45.455 7.45 0.00 0.00 4.02
173 174 2.673368 CACGAAACCTGAGCTTATGGAC 59.327 50.000 7.45 0.00 0.00 4.02
174 175 2.565391 TCACGAAACCTGAGCTTATGGA 59.435 45.455 7.45 0.00 0.00 3.41
175 176 2.972625 TCACGAAACCTGAGCTTATGG 58.027 47.619 0.00 0.00 0.00 2.74
176 177 4.393062 ACATTCACGAAACCTGAGCTTATG 59.607 41.667 0.00 0.00 0.00 1.90
177 178 4.393062 CACATTCACGAAACCTGAGCTTAT 59.607 41.667 0.00 0.00 0.00 1.73
178 179 3.745975 CACATTCACGAAACCTGAGCTTA 59.254 43.478 0.00 0.00 0.00 3.09
179 180 2.549754 CACATTCACGAAACCTGAGCTT 59.450 45.455 0.00 0.00 0.00 3.74
180 181 2.146342 CACATTCACGAAACCTGAGCT 58.854 47.619 0.00 0.00 0.00 4.09
181 182 2.096218 GTCACATTCACGAAACCTGAGC 60.096 50.000 0.00 0.00 0.00 4.26
182 183 3.059597 GTGTCACATTCACGAAACCTGAG 60.060 47.826 0.00 0.00 0.00 3.35
183 184 2.869801 GTGTCACATTCACGAAACCTGA 59.130 45.455 0.00 0.00 0.00 3.86
184 185 2.032030 GGTGTCACATTCACGAAACCTG 60.032 50.000 5.12 0.00 36.69 4.00
185 186 2.218603 GGTGTCACATTCACGAAACCT 58.781 47.619 5.12 0.00 36.69 3.50
186 187 1.944024 TGGTGTCACATTCACGAAACC 59.056 47.619 5.12 0.00 39.62 3.27
187 188 3.896648 ATGGTGTCACATTCACGAAAC 57.103 42.857 5.12 0.00 36.76 2.78
188 189 4.578516 AGAAATGGTGTCACATTCACGAAA 59.421 37.500 5.12 0.00 40.01 3.46
189 190 4.024133 CAGAAATGGTGTCACATTCACGAA 60.024 41.667 5.12 0.00 40.01 3.85
190 191 3.498018 CAGAAATGGTGTCACATTCACGA 59.502 43.478 5.12 0.00 40.01 4.35
191 192 3.498018 TCAGAAATGGTGTCACATTCACG 59.502 43.478 5.12 2.86 40.01 4.35
192 193 5.633830 ATCAGAAATGGTGTCACATTCAC 57.366 39.130 5.12 0.00 40.01 3.18
193 194 6.653526 AAATCAGAAATGGTGTCACATTCA 57.346 33.333 5.12 0.00 40.01 2.57
194 195 8.081633 TGTAAAATCAGAAATGGTGTCACATTC 58.918 33.333 5.12 6.33 40.01 2.67
195 196 7.950512 TGTAAAATCAGAAATGGTGTCACATT 58.049 30.769 5.12 0.50 42.56 2.71
196 197 7.231317 ACTGTAAAATCAGAAATGGTGTCACAT 59.769 33.333 5.12 0.00 38.63 3.21
197 198 6.545666 ACTGTAAAATCAGAAATGGTGTCACA 59.454 34.615 5.12 0.00 38.63 3.58
198 199 6.970484 ACTGTAAAATCAGAAATGGTGTCAC 58.030 36.000 0.00 0.00 38.63 3.67
199 200 7.936847 AGTACTGTAAAATCAGAAATGGTGTCA 59.063 33.333 0.00 0.00 38.63 3.58
200 201 8.324163 AGTACTGTAAAATCAGAAATGGTGTC 57.676 34.615 0.00 0.00 38.63 3.67
201 202 8.691661 AAGTACTGTAAAATCAGAAATGGTGT 57.308 30.769 0.00 0.00 38.63 4.16
202 203 9.398170 CAAAGTACTGTAAAATCAGAAATGGTG 57.602 33.333 0.00 0.00 38.63 4.17
203 204 9.131791 ACAAAGTACTGTAAAATCAGAAATGGT 57.868 29.630 0.00 0.00 38.63 3.55
204 205 9.398170 CACAAAGTACTGTAAAATCAGAAATGG 57.602 33.333 0.00 0.00 38.63 3.16
205 206 9.398170 CCACAAAGTACTGTAAAATCAGAAATG 57.602 33.333 0.00 0.00 38.63 2.32
206 207 8.082242 GCCACAAAGTACTGTAAAATCAGAAAT 58.918 33.333 0.00 0.00 38.63 2.17
207 208 7.422399 GCCACAAAGTACTGTAAAATCAGAAA 58.578 34.615 0.00 0.00 38.63 2.52
208 209 6.016610 GGCCACAAAGTACTGTAAAATCAGAA 60.017 38.462 0.00 0.00 38.63 3.02
209 210 5.472137 GGCCACAAAGTACTGTAAAATCAGA 59.528 40.000 0.00 0.00 38.63 3.27
210 211 5.473504 AGGCCACAAAGTACTGTAAAATCAG 59.526 40.000 5.01 0.00 40.80 2.90
211 212 5.381757 AGGCCACAAAGTACTGTAAAATCA 58.618 37.500 5.01 0.00 0.00 2.57
212 213 5.472137 TGAGGCCACAAAGTACTGTAAAATC 59.528 40.000 5.01 0.00 0.00 2.17
213 214 5.381757 TGAGGCCACAAAGTACTGTAAAAT 58.618 37.500 5.01 0.00 0.00 1.82
214 215 4.783055 TGAGGCCACAAAGTACTGTAAAA 58.217 39.130 5.01 0.00 0.00 1.52
215 216 4.425180 TGAGGCCACAAAGTACTGTAAA 57.575 40.909 5.01 0.00 0.00 2.01
216 217 4.634012 ATGAGGCCACAAAGTACTGTAA 57.366 40.909 7.05 0.00 0.00 2.41
217 218 4.382685 GCTATGAGGCCACAAAGTACTGTA 60.383 45.833 7.05 0.00 0.00 2.74
218 219 3.619979 GCTATGAGGCCACAAAGTACTGT 60.620 47.826 7.05 0.00 0.00 3.55
219 220 2.939103 GCTATGAGGCCACAAAGTACTG 59.061 50.000 7.05 0.00 0.00 2.74
220 221 2.571653 TGCTATGAGGCCACAAAGTACT 59.428 45.455 7.05 0.00 0.00 2.73
221 222 2.985896 TGCTATGAGGCCACAAAGTAC 58.014 47.619 7.05 0.00 0.00 2.73
222 223 3.544684 CATGCTATGAGGCCACAAAGTA 58.455 45.455 7.05 0.00 0.00 2.24
223 224 2.372264 CATGCTATGAGGCCACAAAGT 58.628 47.619 7.05 0.00 0.00 2.66
224 225 1.679680 CCATGCTATGAGGCCACAAAG 59.320 52.381 7.05 0.00 0.00 2.77
225 226 1.284491 TCCATGCTATGAGGCCACAAA 59.716 47.619 7.05 0.00 0.00 2.83
226 227 0.918258 TCCATGCTATGAGGCCACAA 59.082 50.000 7.05 0.00 0.00 3.33
227 228 1.072806 GATCCATGCTATGAGGCCACA 59.927 52.381 4.98 4.98 0.00 4.17
228 229 1.072806 TGATCCATGCTATGAGGCCAC 59.927 52.381 5.01 0.00 0.00 5.01
229 230 1.437397 TGATCCATGCTATGAGGCCA 58.563 50.000 5.01 0.00 0.00 5.36
230 231 2.039480 TCTTGATCCATGCTATGAGGCC 59.961 50.000 0.00 0.00 0.00 5.19
231 232 3.413846 TCTTGATCCATGCTATGAGGC 57.586 47.619 0.00 0.00 0.00 4.70
232 233 6.373774 GGTATTTCTTGATCCATGCTATGAGG 59.626 42.308 0.00 0.00 0.00 3.86
233 234 6.938596 TGGTATTTCTTGATCCATGCTATGAG 59.061 38.462 0.00 0.00 0.00 2.90
234 235 6.840527 TGGTATTTCTTGATCCATGCTATGA 58.159 36.000 0.00 0.00 0.00 2.15
235 236 7.698506 ATGGTATTTCTTGATCCATGCTATG 57.301 36.000 0.00 0.00 37.48 2.23
236 237 9.624373 GATATGGTATTTCTTGATCCATGCTAT 57.376 33.333 0.00 0.00 38.97 2.97
237 238 8.605065 TGATATGGTATTTCTTGATCCATGCTA 58.395 33.333 0.00 0.00 38.97 3.49
238 239 7.464273 TGATATGGTATTTCTTGATCCATGCT 58.536 34.615 0.00 0.00 38.97 3.79
239 240 7.692460 TGATATGGTATTTCTTGATCCATGC 57.308 36.000 0.00 0.00 38.97 4.06
240 241 9.070179 TGTTGATATGGTATTTCTTGATCCATG 57.930 33.333 0.00 0.00 38.97 3.66
241 242 9.293404 CTGTTGATATGGTATTTCTTGATCCAT 57.707 33.333 0.00 0.00 41.10 3.41
242 243 7.720957 CCTGTTGATATGGTATTTCTTGATCCA 59.279 37.037 0.00 0.00 0.00 3.41
243 244 7.308830 GCCTGTTGATATGGTATTTCTTGATCC 60.309 40.741 0.00 0.00 0.00 3.36
244 245 7.229306 TGCCTGTTGATATGGTATTTCTTGATC 59.771 37.037 0.00 0.00 0.00 2.92
245 246 7.062322 TGCCTGTTGATATGGTATTTCTTGAT 58.938 34.615 0.00 0.00 0.00 2.57
246 247 6.422333 TGCCTGTTGATATGGTATTTCTTGA 58.578 36.000 0.00 0.00 0.00 3.02
247 248 6.698008 TGCCTGTTGATATGGTATTTCTTG 57.302 37.500 0.00 0.00 0.00 3.02
248 249 6.183360 CGTTGCCTGTTGATATGGTATTTCTT 60.183 38.462 0.00 0.00 0.00 2.52
249 250 5.296780 CGTTGCCTGTTGATATGGTATTTCT 59.703 40.000 0.00 0.00 0.00 2.52
250 251 5.295787 TCGTTGCCTGTTGATATGGTATTTC 59.704 40.000 0.00 0.00 0.00 2.17
251 252 5.065988 GTCGTTGCCTGTTGATATGGTATTT 59.934 40.000 0.00 0.00 0.00 1.40
252 253 4.574828 GTCGTTGCCTGTTGATATGGTATT 59.425 41.667 0.00 0.00 0.00 1.89
253 254 4.127171 GTCGTTGCCTGTTGATATGGTAT 58.873 43.478 0.00 0.00 0.00 2.73
254 255 3.055747 TGTCGTTGCCTGTTGATATGGTA 60.056 43.478 0.00 0.00 0.00 3.25
255 256 2.290008 TGTCGTTGCCTGTTGATATGGT 60.290 45.455 0.00 0.00 0.00 3.55
256 257 2.355197 TGTCGTTGCCTGTTGATATGG 58.645 47.619 0.00 0.00 0.00 2.74
257 258 4.212004 CCTATGTCGTTGCCTGTTGATATG 59.788 45.833 0.00 0.00 0.00 1.78
258 259 4.141711 ACCTATGTCGTTGCCTGTTGATAT 60.142 41.667 0.00 0.00 0.00 1.63
259 260 3.196901 ACCTATGTCGTTGCCTGTTGATA 59.803 43.478 0.00 0.00 0.00 2.15
260 261 2.027192 ACCTATGTCGTTGCCTGTTGAT 60.027 45.455 0.00 0.00 0.00 2.57
261 262 1.346395 ACCTATGTCGTTGCCTGTTGA 59.654 47.619 0.00 0.00 0.00 3.18
262 263 1.732259 GACCTATGTCGTTGCCTGTTG 59.268 52.381 0.00 0.00 0.00 3.33
263 264 1.623811 AGACCTATGTCGTTGCCTGTT 59.376 47.619 0.00 0.00 46.51 3.16
264 265 1.066858 CAGACCTATGTCGTTGCCTGT 60.067 52.381 0.00 0.00 46.51 4.00
265 266 1.066858 ACAGACCTATGTCGTTGCCTG 60.067 52.381 0.00 0.00 46.51 4.85
266 267 1.066858 CACAGACCTATGTCGTTGCCT 60.067 52.381 0.00 0.00 46.51 4.75
267 268 1.359848 CACAGACCTATGTCGTTGCC 58.640 55.000 0.00 0.00 46.51 4.52
268 269 0.721718 GCACAGACCTATGTCGTTGC 59.278 55.000 9.90 9.90 46.51 4.17
269 270 1.337728 TGGCACAGACCTATGTCGTTG 60.338 52.381 0.00 0.00 46.51 4.10
270 271 0.973632 TGGCACAGACCTATGTCGTT 59.026 50.000 0.00 0.00 46.51 3.85
271 272 2.666085 TGGCACAGACCTATGTCGT 58.334 52.632 0.00 0.00 46.51 4.34
275 276 4.287692 CGTCAGAATGGCACAGACCTATG 61.288 52.174 0.00 0.00 44.43 2.23
277 278 1.204704 CGTCAGAATGGCACAGACCTA 59.795 52.381 0.00 0.00 44.43 3.08
282 283 1.067283 AGAGACGTCAGAATGGCACAG 60.067 52.381 19.50 0.00 44.43 3.66
288 289 0.460987 GGGGCAGAGACGTCAGAATG 60.461 60.000 19.50 11.20 37.54 2.67
297 298 2.087646 GTTTGATTGAGGGGCAGAGAC 58.912 52.381 0.00 0.00 0.00 3.36
301 302 2.205022 TCTGTTTGATTGAGGGGCAG 57.795 50.000 0.00 0.00 0.00 4.85
312 313 6.083630 CACTCGTTTCTGTTTTTCTGTTTGA 58.916 36.000 0.00 0.00 0.00 2.69
313 314 5.286082 CCACTCGTTTCTGTTTTTCTGTTTG 59.714 40.000 0.00 0.00 0.00 2.93
315 316 4.142469 CCCACTCGTTTCTGTTTTTCTGTT 60.142 41.667 0.00 0.00 0.00 3.16
316 317 3.377172 CCCACTCGTTTCTGTTTTTCTGT 59.623 43.478 0.00 0.00 0.00 3.41
317 318 3.243068 CCCCACTCGTTTCTGTTTTTCTG 60.243 47.826 0.00 0.00 0.00 3.02
318 319 2.949644 CCCCACTCGTTTCTGTTTTTCT 59.050 45.455 0.00 0.00 0.00 2.52
319 320 2.946990 TCCCCACTCGTTTCTGTTTTTC 59.053 45.455 0.00 0.00 0.00 2.29
329 330 0.328258 CCAGGAATTCCCCACTCGTT 59.672 55.000 21.22 0.00 36.42 3.85
331 332 1.452108 GCCAGGAATTCCCCACTCG 60.452 63.158 21.22 3.57 36.42 4.18
390 391 2.043227 AGTGCTTATCTAGGTCTGGGC 58.957 52.381 0.00 0.00 0.00 5.36
402 403 3.304525 GCGGTCGATGTAGTAGTGCTTAT 60.305 47.826 0.00 0.00 0.00 1.73
403 404 2.032550 GCGGTCGATGTAGTAGTGCTTA 59.967 50.000 0.00 0.00 0.00 3.09
405 406 0.381089 GCGGTCGATGTAGTAGTGCT 59.619 55.000 0.00 0.00 0.00 4.40
406 407 0.928908 CGCGGTCGATGTAGTAGTGC 60.929 60.000 0.00 0.00 38.10 4.40
407 408 0.654160 TCGCGGTCGATGTAGTAGTG 59.346 55.000 6.13 0.00 40.21 2.74
408 409 3.070076 TCGCGGTCGATGTAGTAGT 57.930 52.632 6.13 0.00 40.21 2.73
440 441 1.464997 GCGTCCAACCTTGTGATTCTC 59.535 52.381 0.00 0.00 0.00 2.87
465 466 0.107116 TAGTCACTCGGCTCTCCCTC 60.107 60.000 0.00 0.00 0.00 4.30
579 580 1.191489 TTCGTCCACAGGCTGATCCA 61.191 55.000 23.66 0.00 37.29 3.41
605 606 3.219928 GCTCTGCCCGAGATCCGA 61.220 66.667 4.46 0.00 42.62 4.55
606 607 3.222855 AGCTCTGCCCGAGATCCG 61.223 66.667 4.46 0.00 42.62 4.18
611 612 2.108566 CATCCAGCTCTGCCCGAG 59.891 66.667 0.00 0.00 42.88 4.63
612 613 2.685017 ACATCCAGCTCTGCCCGA 60.685 61.111 0.00 0.00 0.00 5.14
613 614 2.202987 GACATCCAGCTCTGCCCG 60.203 66.667 0.00 0.00 0.00 6.13
616 617 1.812922 CGGTGACATCCAGCTCTGC 60.813 63.158 0.00 0.00 40.94 4.26
617 618 0.179116 CTCGGTGACATCCAGCTCTG 60.179 60.000 0.00 0.00 40.94 3.35
618 619 1.326213 CCTCGGTGACATCCAGCTCT 61.326 60.000 0.00 0.00 40.94 4.09
619 620 1.142748 CCTCGGTGACATCCAGCTC 59.857 63.158 0.00 0.00 40.94 4.09
620 621 1.305297 TCCTCGGTGACATCCAGCT 60.305 57.895 0.00 0.00 40.94 4.24
621 622 1.153549 GTCCTCGGTGACATCCAGC 60.154 63.158 1.09 0.00 39.77 4.85
622 623 1.139734 CGTCCTCGGTGACATCCAG 59.860 63.158 6.15 0.00 34.88 3.86
623 624 3.284336 CGTCCTCGGTGACATCCA 58.716 61.111 6.15 0.00 34.88 3.41
694 696 1.331399 CGACCCCTTCTCTTCTCCCC 61.331 65.000 0.00 0.00 0.00 4.81
700 702 3.009714 GCCCCGACCCCTTCTCTT 61.010 66.667 0.00 0.00 0.00 2.85
701 703 3.986116 GAGCCCCGACCCCTTCTCT 62.986 68.421 0.00 0.00 0.00 3.10
954 977 2.918276 GGGCTAGGGCGAGGGTAG 60.918 72.222 0.00 0.00 39.81 3.18
979 1002 1.244816 GCCTGTCAAACCCTTGGTAC 58.755 55.000 0.00 0.00 33.12 3.34
981 1004 1.528309 CGCCTGTCAAACCCTTGGT 60.528 57.895 0.00 0.00 37.65 3.67
1135 1158 6.284891 ACACATGATTTAAGGAAACCATGG 57.715 37.500 11.19 11.19 37.02 3.66
1201 1236 3.881089 ACCCTAAGCGCGCTTTTTATTAT 59.119 39.130 46.40 25.80 37.47 1.28
1202 1237 3.272581 ACCCTAAGCGCGCTTTTTATTA 58.727 40.909 46.40 28.56 37.47 0.98
1203 1238 2.089201 ACCCTAAGCGCGCTTTTTATT 58.911 42.857 46.40 27.32 37.47 1.40
1204 1239 1.669265 GACCCTAAGCGCGCTTTTTAT 59.331 47.619 46.40 30.58 37.47 1.40
1205 1240 1.081094 GACCCTAAGCGCGCTTTTTA 58.919 50.000 46.40 30.02 37.47 1.52
1276 1322 4.225942 AGCAGAAACATCCCATCTCTACAA 59.774 41.667 0.00 0.00 0.00 2.41
1277 1323 3.776969 AGCAGAAACATCCCATCTCTACA 59.223 43.478 0.00 0.00 0.00 2.74
1278 1324 4.414337 AGCAGAAACATCCCATCTCTAC 57.586 45.455 0.00 0.00 0.00 2.59
1331 1377 0.769873 CCTATCCCAGGCTGAGCAAT 59.230 55.000 17.94 6.13 37.70 3.56
1363 1409 7.355778 GTCTGTTTTACCATCTCAGAAAGTTG 58.644 38.462 0.00 0.00 37.00 3.16
1388 1434 1.089920 CCTTGAGAACAATGCCCTCG 58.910 55.000 0.00 0.00 35.37 4.63
1404 1450 1.077663 ACATCCATTGCACCTTCCCTT 59.922 47.619 0.00 0.00 0.00 3.95
1426 1472 6.080406 GGAACAATCGAACTGAATCTTCAAC 58.920 40.000 4.99 0.00 36.64 3.18
1469 1518 5.453587 GCTGCAAGATGAAACTTATTAAGCG 59.546 40.000 3.28 0.00 34.07 4.68
1496 1545 1.200020 GAATCCCGCAGTTCTTGTTGG 59.800 52.381 0.00 0.00 0.00 3.77
1612 1664 3.627123 TCAGTTGTTCCAATCCATATGCG 59.373 43.478 0.00 0.00 0.00 4.73
1724 1779 0.613012 GCCTGGCCTTCTTCATGGTT 60.613 55.000 7.66 0.00 0.00 3.67
1725 1780 1.000396 GCCTGGCCTTCTTCATGGT 60.000 57.895 7.66 0.00 0.00 3.55
1746 1804 5.806654 ATGCACAAACTAACCAATTTCCT 57.193 34.783 0.00 0.00 0.00 3.36
1858 1916 0.247736 AGAACGCTGACCACAGATCC 59.752 55.000 0.00 0.00 46.03 3.36
1859 1917 1.728971 CAAGAACGCTGACCACAGATC 59.271 52.381 0.00 0.00 46.03 2.75
1864 1922 1.166531 AAGGCAAGAACGCTGACCAC 61.167 55.000 0.00 0.00 0.00 4.16
1876 1934 1.843992 GCATTCGGCATTAAGGCAAG 58.156 50.000 14.82 7.43 44.47 4.01
1986 2047 6.388278 ACTACCTAGACGAACAGAACATTTC 58.612 40.000 0.00 0.00 0.00 2.17
1993 2054 7.790027 AGTCTAATACTACCTAGACGAACAGA 58.210 38.462 0.00 0.00 45.75 3.41
2070 2131 3.244840 CCCCCATTCTGATGATCTCCTTC 60.245 52.174 0.00 0.00 35.16 3.46
2078 2139 1.297968 TCAAGCCCCCATTCTGATGA 58.702 50.000 0.00 0.00 35.16 2.92
2104 2165 3.632145 ACAAGGTTCTTGTGGTTGACATC 59.368 43.478 11.88 0.00 33.40 3.06
2160 2221 4.634443 CCCACCGTCTAAAAGGAATAACAG 59.366 45.833 0.00 0.00 0.00 3.16
2240 2597 9.166173 CTTGAATACATTTCCATGTCTGAAGTA 57.834 33.333 0.00 0.00 43.06 2.24
2299 2657 5.430886 TCAAGATTCACGATTCCACATCAT 58.569 37.500 0.00 0.00 0.00 2.45
2348 2706 8.237949 GCTTCTAAAGTTCCTAATTTCAAGGTC 58.762 37.037 0.00 0.00 35.48 3.85
2520 2881 9.878599 CCATCAATATTTCACTAATACCGAAAC 57.121 33.333 0.00 0.00 31.69 2.78
2629 3001 8.552034 GCCAACTGTATCATAGAATTAACTCAC 58.448 37.037 0.00 0.00 0.00 3.51
2640 3012 8.501580 CAGACATAATTGCCAACTGTATCATAG 58.498 37.037 0.00 0.00 0.00 2.23
2666 3038 2.682155 AATCTTCTCCTCCTTGCGAC 57.318 50.000 0.00 0.00 0.00 5.19
2695 3067 5.436175 TCAACAAGAGAAACCAGAACATCA 58.564 37.500 0.00 0.00 0.00 3.07
2787 3159 7.433537 ACTGCCCATAAGTTACTACAAGTAT 57.566 36.000 0.00 0.00 29.64 2.12
2838 3210 8.059798 AGCTTTCACAAAATAATAGCTGACAT 57.940 30.769 0.00 0.00 0.00 3.06
2937 3309 1.785041 TTCTGAAACGGCAGCAGCAC 61.785 55.000 2.65 0.00 44.61 4.40
3023 3395 6.510879 ACTATAAAGTAACCCAAAGCTTGC 57.489 37.500 0.00 0.00 32.84 4.01
3052 3424 9.692749 CCAGAGAAGTAAAACATCGCTATAATA 57.307 33.333 0.00 0.00 25.70 0.98
3053 3425 8.204836 ACCAGAGAAGTAAAACATCGCTATAAT 58.795 33.333 0.00 0.00 25.70 1.28
3054 3426 7.553334 ACCAGAGAAGTAAAACATCGCTATAA 58.447 34.615 0.00 0.00 25.70 0.98
3055 3427 7.108841 ACCAGAGAAGTAAAACATCGCTATA 57.891 36.000 0.00 0.00 25.70 1.31
3056 3428 5.978814 ACCAGAGAAGTAAAACATCGCTAT 58.021 37.500 0.00 0.00 25.70 2.97
3057 3429 5.401531 ACCAGAGAAGTAAAACATCGCTA 57.598 39.130 0.00 0.00 25.70 4.26
3148 3520 5.118990 CACCCACATACTTGACTTATCCAG 58.881 45.833 0.00 0.00 0.00 3.86
3241 3843 3.057596 CACTCGAAATTTAAAGCCCTGCA 60.058 43.478 0.00 0.00 0.00 4.41
3346 3949 9.953565 ACATCAAATCCAATGAATCATTTTTCT 57.046 25.926 5.63 0.00 31.05 2.52
3394 3998 0.316937 CACACACGGTGCATGACAAC 60.317 55.000 8.30 0.00 41.36 3.32
3429 4033 8.090214 ACTGCATACATTTCATTTTAGCAACTT 58.910 29.630 0.00 0.00 0.00 2.66
3437 4042 8.851541 ATTCCAAACTGCATACATTTCATTTT 57.148 26.923 0.00 0.00 0.00 1.82
3532 4217 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3533 4218 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3534 4219 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3535 4220 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3536 4221 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3537 4222 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3538 4223 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3539 4224 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3540 4225 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3541 4226 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3542 4227 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3543 4228 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3544 4229 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3545 4230 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
3546 4231 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
3547 4232 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
3548 4233 3.323403 GGGAGAGAGAGAGAGAGAGAGAG 59.677 56.522 0.00 0.00 0.00 3.20
3549 4234 3.051803 AGGGAGAGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
3550 4235 3.070734 CAGGGAGAGAGAGAGAGAGAGAG 59.929 56.522 0.00 0.00 0.00 3.20
3551 4236 3.041211 CAGGGAGAGAGAGAGAGAGAGA 58.959 54.545 0.00 0.00 0.00 3.10
3552 4237 2.486191 GCAGGGAGAGAGAGAGAGAGAG 60.486 59.091 0.00 0.00 0.00 3.20
3553 4238 1.490490 GCAGGGAGAGAGAGAGAGAGA 59.510 57.143 0.00 0.00 0.00 3.10
3554 4239 1.492176 AGCAGGGAGAGAGAGAGAGAG 59.508 57.143 0.00 0.00 0.00 3.20
3555 4240 1.595311 AGCAGGGAGAGAGAGAGAGA 58.405 55.000 0.00 0.00 0.00 3.10
3556 4241 3.214328 GTTAGCAGGGAGAGAGAGAGAG 58.786 54.545 0.00 0.00 0.00 3.20
3557 4242 2.420827 CGTTAGCAGGGAGAGAGAGAGA 60.421 54.545 0.00 0.00 0.00 3.10
3558 4243 1.946768 CGTTAGCAGGGAGAGAGAGAG 59.053 57.143 0.00 0.00 0.00 3.20
3559 4244 1.408961 CCGTTAGCAGGGAGAGAGAGA 60.409 57.143 0.00 0.00 0.00 3.10
3560 4245 1.028905 CCGTTAGCAGGGAGAGAGAG 58.971 60.000 0.00 0.00 0.00 3.20
3561 4246 0.331954 ACCGTTAGCAGGGAGAGAGA 59.668 55.000 0.00 0.00 0.00 3.10
3562 4247 1.187087 AACCGTTAGCAGGGAGAGAG 58.813 55.000 0.00 0.00 0.00 3.20
3563 4248 2.519771 TAACCGTTAGCAGGGAGAGA 57.480 50.000 0.00 0.00 0.00 3.10
3564 4249 3.118738 ACAATAACCGTTAGCAGGGAGAG 60.119 47.826 0.00 0.00 0.00 3.20
3565 4250 2.835764 ACAATAACCGTTAGCAGGGAGA 59.164 45.455 0.00 0.00 0.00 3.71
3566 4251 3.261981 ACAATAACCGTTAGCAGGGAG 57.738 47.619 0.00 0.00 0.00 4.30
3567 4252 3.431207 GCTACAATAACCGTTAGCAGGGA 60.431 47.826 0.00 0.00 0.00 4.20
3575 4260 7.593644 GTCAAATTGAAAGCTACAATAACCGTT 59.406 33.333 15.96 6.91 37.04 4.44
3608 4293 3.699538 TCATATCCTGCTACGCGGAATAT 59.300 43.478 12.47 0.00 37.02 1.28
3615 4300 3.304057 GCCTTTTTCATATCCTGCTACGC 60.304 47.826 0.00 0.00 0.00 4.42
3864 4549 5.838521 ACACAAAAGATGAAACATAAGGGGT 59.161 36.000 0.00 0.00 0.00 4.95
3894 4579 9.810545 GAGTTATCATCTATCTTGGGCTATAAC 57.189 37.037 0.00 0.00 0.00 1.89
3942 4627 3.508762 GTTGACGATAACACGAGGACAT 58.491 45.455 0.00 0.00 37.03 3.06
4024 4709 2.698797 CCACGGAATGGTCTAGTGGTAT 59.301 50.000 4.89 0.00 44.46 2.73
4047 4732 7.212274 CCCATGTTTTTGGATCAATATCTTCC 58.788 38.462 0.00 0.00 39.25 3.46
4053 4738 3.131933 CCGCCCATGTTTTTGGATCAATA 59.868 43.478 0.00 0.00 39.25 1.90
4062 4747 1.540146 GCAGAAACCGCCCATGTTTTT 60.540 47.619 0.00 0.00 36.13 1.94
4098 4783 3.243816 TGAGGTGGAGCAGCAGCA 61.244 61.111 3.17 0.00 45.49 4.41
4155 4840 2.505405 CTCTCCACATACGCTAGCCTA 58.495 52.381 9.66 2.05 0.00 3.93
4309 4994 2.426522 ACAACACAAGGACCATCATCG 58.573 47.619 0.00 0.00 0.00 3.84
4315 5000 1.827969 CCCAAAACAACACAAGGACCA 59.172 47.619 0.00 0.00 0.00 4.02
4335 5020 5.001232 ACAACCACTGATACATACAACACC 58.999 41.667 0.00 0.00 0.00 4.16
4382 5067 5.269189 TCCTTCCCTTGTTTTTCTTTCTGT 58.731 37.500 0.00 0.00 0.00 3.41
4383 5068 5.852282 TCCTTCCCTTGTTTTTCTTTCTG 57.148 39.130 0.00 0.00 0.00 3.02
4384 5069 7.437713 AATTCCTTCCCTTGTTTTTCTTTCT 57.562 32.000 0.00 0.00 0.00 2.52
4385 5070 8.397906 CAAAATTCCTTCCCTTGTTTTTCTTTC 58.602 33.333 0.00 0.00 0.00 2.62
4389 5074 6.821160 TCACAAAATTCCTTCCCTTGTTTTTC 59.179 34.615 0.00 0.00 0.00 2.29
4393 5078 5.425217 ACTTCACAAAATTCCTTCCCTTGTT 59.575 36.000 0.00 0.00 0.00 2.83
4404 5094 9.900264 GTTCATTTGTTACACTTCACAAAATTC 57.100 29.630 1.86 0.00 44.08 2.17
4408 5098 6.529829 GCTGTTCATTTGTTACACTTCACAAA 59.470 34.615 0.27 0.27 44.78 2.83
4409 5099 6.033341 GCTGTTCATTTGTTACACTTCACAA 58.967 36.000 0.00 0.00 0.00 3.33
4412 5102 5.733091 GCAGCTGTTCATTTGTTACACTTCA 60.733 40.000 16.64 0.00 0.00 3.02
4414 5104 4.097741 TGCAGCTGTTCATTTGTTACACTT 59.902 37.500 16.64 0.00 0.00 3.16
4415 5105 3.631686 TGCAGCTGTTCATTTGTTACACT 59.368 39.130 16.64 0.00 0.00 3.55
4426 5116 3.135167 TCCTGATATGATGCAGCTGTTCA 59.865 43.478 16.64 18.30 0.00 3.18
4433 5123 2.067013 CGTGCTCCTGATATGATGCAG 58.933 52.381 0.00 0.00 0.00 4.41
4539 5255 2.940971 GCTCCATCAAGCATGTGTACCA 60.941 50.000 0.00 0.00 42.05 3.25
4540 5256 1.672881 GCTCCATCAAGCATGTGTACC 59.327 52.381 0.00 0.00 42.05 3.34
4541 5257 2.358957 TGCTCCATCAAGCATGTGTAC 58.641 47.619 0.00 0.00 47.00 2.90
4542 5258 2.785540 TGCTCCATCAAGCATGTGTA 57.214 45.000 0.00 0.00 47.00 2.90
4543 5259 3.656457 TGCTCCATCAAGCATGTGT 57.344 47.368 0.00 0.00 47.00 3.72
4587 5303 5.841957 AATCTTGTGTAATGCTTGGATCC 57.158 39.130 4.20 4.20 0.00 3.36
4591 5375 7.988737 TCTGAATAATCTTGTGTAATGCTTGG 58.011 34.615 0.00 0.00 0.00 3.61
4595 5379 9.049523 TGATCTCTGAATAATCTTGTGTAATGC 57.950 33.333 0.00 0.00 0.00 3.56
4603 5387 7.767659 TGTGGTCTTGATCTCTGAATAATCTTG 59.232 37.037 0.00 0.00 0.00 3.02
4732 5517 7.426929 TCTGTGTAGATGCTTCTTTCTTTTC 57.573 36.000 7.51 0.00 33.17 2.29
4769 5559 3.730761 CCAACTGCTGTGCCGCTC 61.731 66.667 0.00 0.00 0.00 5.03
4854 5693 4.056125 TCGACTCCTGTGCCGCTG 62.056 66.667 0.00 0.00 0.00 5.18
4855 5694 4.057428 GTCGACTCCTGTGCCGCT 62.057 66.667 8.70 0.00 0.00 5.52
4857 5696 4.778415 CGGTCGACTCCTGTGCCG 62.778 72.222 16.46 3.78 0.00 5.69
4858 5697 4.436998 CCGGTCGACTCCTGTGCC 62.437 72.222 16.46 0.00 0.00 5.01
4860 5699 4.436998 GGCCGGTCGACTCCTGTG 62.437 72.222 16.46 0.00 0.00 3.66
4870 5709 4.301027 CTGATAGGCCGGCCGGTC 62.301 72.222 41.56 41.56 41.95 4.79
4872 5711 4.609018 CACTGATAGGCCGGCCGG 62.609 72.222 40.26 40.26 41.95 6.13
5044 5883 1.961277 CCGTGCCGCACTTCTTCTT 60.961 57.895 20.87 0.00 31.34 2.52
5045 5884 2.357517 CCGTGCCGCACTTCTTCT 60.358 61.111 20.87 0.00 31.34 2.85
5046 5885 4.090057 GCCGTGCCGCACTTCTTC 62.090 66.667 20.87 2.36 31.34 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.