Multiple sequence alignment - TraesCS7A01G456900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G456900 chr7A 100.000 2336 0 0 1 2336 652539646 652541981 0.000000e+00 4314.0
1 TraesCS7A01G456900 chr7A 81.334 1334 207 19 6 1312 652358000 652359318 0.000000e+00 1046.0
2 TraesCS7A01G456900 chr7A 80.984 1341 220 21 1 1311 652287527 652288862 0.000000e+00 1031.0
3 TraesCS7A01G456900 chr7A 80.735 1334 217 20 6 1312 652339072 652340392 0.000000e+00 1003.0
4 TraesCS7A01G456900 chr7D 95.612 1390 60 1 1 1389 566254050 566255439 0.000000e+00 2228.0
5 TraesCS7A01G456900 chr7D 83.208 1328 197 15 6 1312 566038548 566039870 0.000000e+00 1194.0
6 TraesCS7A01G456900 chr7D 82.426 1360 210 17 6 1341 565618475 565619829 0.000000e+00 1160.0
7 TraesCS7A01G456900 chr7D 82.009 1334 210 17 1 1308 566015061 566016390 0.000000e+00 1107.0
8 TraesCS7A01G456900 chr7D 83.416 603 86 12 715 1310 565613909 565613314 4.390000e-152 547.0
9 TraesCS7A01G456900 chr7D 92.857 70 4 1 1387 1455 566255473 566255542 1.480000e-17 100.0
10 TraesCS7A01G456900 chr7B 82.194 1331 208 17 6 1312 617578813 617580138 0.000000e+00 1118.0
11 TraesCS7A01G456900 chr7B 92.958 355 23 2 1591 1944 619162750 619163103 1.240000e-142 516.0
12 TraesCS7A01G456900 chr7B 81.457 302 21 19 2036 2336 619165115 619165382 5.060000e-52 215.0
13 TraesCS7A01G456900 chr7B 79.184 245 36 10 2082 2324 297400470 297400701 3.110000e-34 156.0
14 TraesCS7A01G456900 chr7B 93.750 64 3 1 1935 1998 619165055 619165117 6.870000e-16 95.3
15 TraesCS7A01G456900 chr5A 82.051 234 32 6 2075 2306 445133901 445134126 8.520000e-45 191.0
16 TraesCS7A01G456900 chr2D 83.410 217 25 6 2086 2301 430625506 430625712 8.520000e-45 191.0
17 TraesCS7A01G456900 chr3D 82.439 205 26 6 2083 2287 400694385 400694579 1.110000e-38 171.0
18 TraesCS7A01G456900 chr6B 80.296 203 32 5 2103 2305 18737886 18737692 1.870000e-31 147.0
19 TraesCS7A01G456900 chr6B 80.864 162 22 8 2082 2241 668909647 668909493 4.080000e-23 119.0
20 TraesCS7A01G456900 chr6B 88.172 93 8 3 2204 2296 285224655 285224566 8.830000e-20 108.0
21 TraesCS7A01G456900 chr6B 78.409 176 28 9 2091 2266 478759985 478760150 3.170000e-19 106.0
22 TraesCS7A01G456900 chr2A 79.710 207 31 10 2101 2306 9138544 9138740 3.130000e-29 139.0
23 TraesCS7A01G456900 chr4B 91.489 94 8 0 2080 2173 666798447 666798540 1.880000e-26 130.0
24 TraesCS7A01G456900 chr5B 88.462 104 9 3 2082 2183 485912075 485912177 3.150000e-24 122.0
25 TraesCS7A01G456900 chr1D 78.882 161 32 2 2103 2262 235674056 235674215 8.830000e-20 108.0
26 TraesCS7A01G456900 chr1D 87.500 88 10 1 2191 2277 59879129 59879216 1.480000e-17 100.0
27 TraesCS7A01G456900 chr6D 86.022 93 10 3 2204 2296 157976976 157976887 1.910000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G456900 chr7A 652539646 652541981 2335 False 4314.000000 4314 100.000000 1 2336 1 chr7A.!!$F4 2335
1 TraesCS7A01G456900 chr7A 652358000 652359318 1318 False 1046.000000 1046 81.334000 6 1312 1 chr7A.!!$F3 1306
2 TraesCS7A01G456900 chr7A 652287527 652288862 1335 False 1031.000000 1031 80.984000 1 1311 1 chr7A.!!$F1 1310
3 TraesCS7A01G456900 chr7A 652339072 652340392 1320 False 1003.000000 1003 80.735000 6 1312 1 chr7A.!!$F2 1306
4 TraesCS7A01G456900 chr7D 566038548 566039870 1322 False 1194.000000 1194 83.208000 6 1312 1 chr7D.!!$F3 1306
5 TraesCS7A01G456900 chr7D 566254050 566255542 1492 False 1164.000000 2228 94.234500 1 1455 2 chr7D.!!$F4 1454
6 TraesCS7A01G456900 chr7D 565618475 565619829 1354 False 1160.000000 1160 82.426000 6 1341 1 chr7D.!!$F1 1335
7 TraesCS7A01G456900 chr7D 566015061 566016390 1329 False 1107.000000 1107 82.009000 1 1308 1 chr7D.!!$F2 1307
8 TraesCS7A01G456900 chr7D 565613314 565613909 595 True 547.000000 547 83.416000 715 1310 1 chr7D.!!$R1 595
9 TraesCS7A01G456900 chr7B 617578813 617580138 1325 False 1118.000000 1118 82.194000 6 1312 1 chr7B.!!$F2 1306
10 TraesCS7A01G456900 chr7B 619162750 619165382 2632 False 275.433333 516 89.388333 1591 2336 3 chr7B.!!$F3 745

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
732 776 0.250467 TGCCTGAGCTGGTGAGAAAC 60.25 55.0 0.0 0.0 40.8 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1584 1672 0.036952 CCTCGTCCATGCACTTGACT 60.037 55.0 9.57 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 2.959507 ATCCGCTTGCCAAAATAACC 57.040 45.000 0.00 0.00 0.00 2.85
137 144 2.899838 GTTGCACCGTCTGGCACA 60.900 61.111 0.00 0.00 40.23 4.57
154 161 2.930455 GCACAGAGAGCTCAAGAACCTC 60.930 54.545 17.77 2.36 0.00 3.85
170 195 1.380403 CCTCGCGGACTCTGACATCT 61.380 60.000 6.13 0.00 0.00 2.90
317 348 0.672342 GGCCACGTCGGTCATACTAT 59.328 55.000 0.00 0.00 40.18 2.12
394 428 0.759346 GATCCTCCTTGGCCGTGTAT 59.241 55.000 0.00 0.00 35.26 2.29
474 508 2.089887 TTTGGCTCAGTGTACCGCGA 62.090 55.000 8.23 0.00 0.00 5.87
506 540 0.951558 GCAAATGGGAGACAACACGT 59.048 50.000 0.00 0.00 0.00 4.49
540 574 1.956477 GGCAGTCAAGAAGCTGGAAAA 59.044 47.619 0.00 0.00 33.62 2.29
596 640 3.807538 GCACACTGGGCTGCATCG 61.808 66.667 0.50 0.00 33.31 3.84
701 745 3.309296 TCCCTCGATGGCTATCTTTTCT 58.691 45.455 8.55 0.00 0.00 2.52
732 776 0.250467 TGCCTGAGCTGGTGAGAAAC 60.250 55.000 0.00 0.00 40.80 2.78
738 782 2.101750 TGAGCTGGTGAGAAACGTACAA 59.898 45.455 0.00 0.00 0.00 2.41
741 785 2.033151 GCTGGTGAGAAACGTACAACAC 60.033 50.000 0.00 0.00 0.00 3.32
845 889 1.033574 CATCCTACTGGACGAGGACC 58.966 60.000 0.00 0.00 46.51 4.46
1329 1380 0.657840 GAGTGTTGCAACAGCTCGTT 59.342 50.000 31.81 13.36 40.05 3.85
1423 1510 2.699251 TGTACTACTGTCACAGCACG 57.301 50.000 4.13 0.00 34.37 5.34
1424 1511 1.268625 TGTACTACTGTCACAGCACGG 59.731 52.381 4.13 0.00 34.37 4.94
1430 1517 4.927782 GTCACAGCACGGGTGGCA 62.928 66.667 0.43 0.00 40.49 4.92
1435 1522 4.101448 AGCACGGGTGGCAGATCC 62.101 66.667 0.43 0.00 0.00 3.36
1455 1543 7.863375 CAGATCCTAAAGTGTTACTCTAATCCG 59.137 40.741 0.00 0.00 0.00 4.18
1456 1544 5.899299 TCCTAAAGTGTTACTCTAATCCGC 58.101 41.667 0.00 0.00 0.00 5.54
1457 1545 4.738740 CCTAAAGTGTTACTCTAATCCGCG 59.261 45.833 0.00 0.00 0.00 6.46
1458 1546 4.445452 AAAGTGTTACTCTAATCCGCGA 57.555 40.909 8.23 0.00 0.00 5.87
1459 1547 4.445452 AAGTGTTACTCTAATCCGCGAA 57.555 40.909 8.23 0.00 0.00 4.70
1460 1548 3.767278 AGTGTTACTCTAATCCGCGAAC 58.233 45.455 8.23 0.33 0.00 3.95
1461 1549 3.192001 AGTGTTACTCTAATCCGCGAACA 59.808 43.478 8.23 3.55 0.00 3.18
1462 1550 3.922240 GTGTTACTCTAATCCGCGAACAA 59.078 43.478 8.23 0.00 0.00 2.83
1463 1551 3.922240 TGTTACTCTAATCCGCGAACAAC 59.078 43.478 8.23 0.00 0.00 3.32
1464 1552 4.171754 GTTACTCTAATCCGCGAACAACT 58.828 43.478 8.23 0.00 0.00 3.16
1465 1553 2.607187 ACTCTAATCCGCGAACAACTG 58.393 47.619 8.23 0.00 0.00 3.16
1466 1554 1.324736 CTCTAATCCGCGAACAACTGC 59.675 52.381 8.23 0.00 0.00 4.40
1467 1555 1.075542 CTAATCCGCGAACAACTGCA 58.924 50.000 8.23 0.00 0.00 4.41
1468 1556 0.793861 TAATCCGCGAACAACTGCAC 59.206 50.000 8.23 0.00 0.00 4.57
1469 1557 1.852067 AATCCGCGAACAACTGCACC 61.852 55.000 8.23 0.00 0.00 5.01
1470 1558 4.025401 CCGCGAACAACTGCACCC 62.025 66.667 8.23 0.00 0.00 4.61
1471 1559 4.368808 CGCGAACAACTGCACCCG 62.369 66.667 0.00 0.00 0.00 5.28
1472 1560 3.276846 GCGAACAACTGCACCCGT 61.277 61.111 0.00 0.00 0.00 5.28
1473 1561 1.957186 GCGAACAACTGCACCCGTA 60.957 57.895 0.00 0.00 0.00 4.02
1474 1562 1.296056 GCGAACAACTGCACCCGTAT 61.296 55.000 0.00 0.00 0.00 3.06
1475 1563 0.442310 CGAACAACTGCACCCGTATG 59.558 55.000 0.00 0.00 0.00 2.39
1476 1564 1.803334 GAACAACTGCACCCGTATGA 58.197 50.000 0.00 0.00 0.00 2.15
1477 1565 2.147958 GAACAACTGCACCCGTATGAA 58.852 47.619 0.00 0.00 0.00 2.57
1478 1566 1.519408 ACAACTGCACCCGTATGAAC 58.481 50.000 0.00 0.00 0.00 3.18
1479 1567 1.071699 ACAACTGCACCCGTATGAACT 59.928 47.619 0.00 0.00 0.00 3.01
1480 1568 1.464608 CAACTGCACCCGTATGAACTG 59.535 52.381 0.00 0.00 0.00 3.16
1481 1569 0.685097 ACTGCACCCGTATGAACTGT 59.315 50.000 0.00 0.00 0.00 3.55
1482 1570 1.078709 CTGCACCCGTATGAACTGTG 58.921 55.000 0.00 0.00 32.30 3.66
1483 1571 0.682292 TGCACCCGTATGAACTGTGA 59.318 50.000 0.00 0.00 31.33 3.58
1484 1572 1.070914 TGCACCCGTATGAACTGTGAA 59.929 47.619 0.00 0.00 31.33 3.18
1485 1573 2.290008 TGCACCCGTATGAACTGTGAAT 60.290 45.455 0.00 0.00 31.33 2.57
1486 1574 2.747446 GCACCCGTATGAACTGTGAATT 59.253 45.455 0.00 0.00 31.33 2.17
1487 1575 3.181510 GCACCCGTATGAACTGTGAATTC 60.182 47.826 0.00 0.00 31.33 2.17
1488 1576 4.253685 CACCCGTATGAACTGTGAATTCT 58.746 43.478 7.05 0.00 31.33 2.40
1489 1577 5.416083 CACCCGTATGAACTGTGAATTCTA 58.584 41.667 7.05 0.00 31.33 2.10
1490 1578 5.520288 CACCCGTATGAACTGTGAATTCTAG 59.480 44.000 7.05 7.75 31.33 2.43
1491 1579 5.421056 ACCCGTATGAACTGTGAATTCTAGA 59.579 40.000 14.53 0.00 0.00 2.43
1492 1580 5.980116 CCCGTATGAACTGTGAATTCTAGAG 59.020 44.000 14.53 8.31 0.00 2.43
1493 1581 6.183360 CCCGTATGAACTGTGAATTCTAGAGA 60.183 42.308 14.53 2.14 0.00 3.10
1494 1582 7.258441 CCGTATGAACTGTGAATTCTAGAGAA 58.742 38.462 14.53 0.00 38.56 2.87
1495 1583 7.759886 CCGTATGAACTGTGAATTCTAGAGAAA 59.240 37.037 14.53 0.00 37.61 2.52
1496 1584 9.307121 CGTATGAACTGTGAATTCTAGAGAAAT 57.693 33.333 14.53 0.00 37.61 2.17
1500 1588 9.645059 TGAACTGTGAATTCTAGAGAAATAGTG 57.355 33.333 14.53 0.00 37.61 2.74
1501 1589 9.862371 GAACTGTGAATTCTAGAGAAATAGTGA 57.138 33.333 14.53 0.00 37.61 3.41
1534 1622 3.967332 AAAAATATGCTGCTGGTTGCT 57.033 38.095 0.00 0.00 43.37 3.91
1535 1623 3.515330 AAAATATGCTGCTGGTTGCTC 57.485 42.857 0.00 0.00 43.37 4.26
1536 1624 1.396653 AATATGCTGCTGGTTGCTCC 58.603 50.000 0.00 0.00 43.37 4.70
1537 1625 0.256752 ATATGCTGCTGGTTGCTCCA 59.743 50.000 0.00 1.68 45.01 3.86
1538 1626 0.256752 TATGCTGCTGGTTGCTCCAT 59.743 50.000 0.00 0.00 46.12 3.41
1539 1627 0.613853 ATGCTGCTGGTTGCTCCATT 60.614 50.000 0.00 0.00 46.12 3.16
1540 1628 0.038021 TGCTGCTGGTTGCTCCATTA 59.962 50.000 0.00 0.00 46.12 1.90
1541 1629 0.737219 GCTGCTGGTTGCTCCATTAG 59.263 55.000 0.00 5.21 46.12 1.73
1542 1630 1.386533 CTGCTGGTTGCTCCATTAGG 58.613 55.000 2.00 0.00 46.12 2.69
1543 1631 0.991146 TGCTGGTTGCTCCATTAGGA 59.009 50.000 2.00 0.00 46.12 2.94
1544 1632 1.565759 TGCTGGTTGCTCCATTAGGAT 59.434 47.619 2.00 0.00 46.12 3.24
1545 1633 1.952296 GCTGGTTGCTCCATTAGGATG 59.048 52.381 2.00 0.00 46.12 3.51
1546 1634 2.421952 GCTGGTTGCTCCATTAGGATGA 60.422 50.000 2.00 0.00 46.12 2.92
1547 1635 3.209410 CTGGTTGCTCCATTAGGATGAC 58.791 50.000 2.00 0.00 46.12 3.06
1548 1636 2.213499 GGTTGCTCCATTAGGATGACG 58.787 52.381 0.00 0.00 44.70 4.35
1549 1637 2.213499 GTTGCTCCATTAGGATGACGG 58.787 52.381 0.00 0.00 44.70 4.79
1550 1638 0.106708 TGCTCCATTAGGATGACGGC 59.893 55.000 0.00 0.00 44.70 5.68
1551 1639 0.946221 GCTCCATTAGGATGACGGCG 60.946 60.000 4.80 4.80 44.70 6.46
1552 1640 0.319900 CTCCATTAGGATGACGGCGG 60.320 60.000 13.24 0.00 44.70 6.13
1553 1641 1.046472 TCCATTAGGATGACGGCGGT 61.046 55.000 13.24 0.00 39.61 5.68
1554 1642 0.179056 CCATTAGGATGACGGCGGTT 60.179 55.000 13.24 0.00 36.89 4.44
1555 1643 1.217882 CATTAGGATGACGGCGGTTC 58.782 55.000 13.24 4.54 35.16 3.62
1556 1644 1.120530 ATTAGGATGACGGCGGTTCT 58.879 50.000 13.24 3.37 0.00 3.01
1557 1645 0.174845 TTAGGATGACGGCGGTTCTG 59.825 55.000 13.24 0.00 0.00 3.02
1558 1646 0.968901 TAGGATGACGGCGGTTCTGT 60.969 55.000 13.24 0.00 36.89 3.41
1559 1647 0.968901 AGGATGACGGCGGTTCTGTA 60.969 55.000 13.24 0.00 33.57 2.74
1560 1648 0.527817 GGATGACGGCGGTTCTGTAG 60.528 60.000 13.24 0.00 33.57 2.74
1561 1649 1.146358 GATGACGGCGGTTCTGTAGC 61.146 60.000 13.24 0.00 33.57 3.58
1562 1650 1.605058 ATGACGGCGGTTCTGTAGCT 61.605 55.000 13.24 0.00 33.57 3.32
1563 1651 1.080025 GACGGCGGTTCTGTAGCTT 60.080 57.895 13.24 0.00 33.57 3.74
1564 1652 0.669625 GACGGCGGTTCTGTAGCTTT 60.670 55.000 13.24 0.00 33.57 3.51
1565 1653 0.949105 ACGGCGGTTCTGTAGCTTTG 60.949 55.000 13.24 0.00 31.06 2.77
1566 1654 0.949105 CGGCGGTTCTGTAGCTTTGT 60.949 55.000 0.00 0.00 0.00 2.83
1567 1655 0.517316 GGCGGTTCTGTAGCTTTGTG 59.483 55.000 0.00 0.00 0.00 3.33
1568 1656 0.517316 GCGGTTCTGTAGCTTTGTGG 59.483 55.000 0.00 0.00 0.00 4.17
1569 1657 1.878953 CGGTTCTGTAGCTTTGTGGT 58.121 50.000 0.00 0.00 0.00 4.16
1570 1658 2.218603 CGGTTCTGTAGCTTTGTGGTT 58.781 47.619 0.00 0.00 0.00 3.67
1571 1659 3.395639 CGGTTCTGTAGCTTTGTGGTTA 58.604 45.455 0.00 0.00 0.00 2.85
1572 1660 3.185797 CGGTTCTGTAGCTTTGTGGTTAC 59.814 47.826 0.00 0.00 0.00 2.50
1573 1661 4.386711 GGTTCTGTAGCTTTGTGGTTACT 58.613 43.478 0.00 0.00 0.00 2.24
1574 1662 4.820173 GGTTCTGTAGCTTTGTGGTTACTT 59.180 41.667 0.00 0.00 0.00 2.24
1575 1663 5.993441 GGTTCTGTAGCTTTGTGGTTACTTA 59.007 40.000 0.00 0.00 0.00 2.24
1576 1664 6.484308 GGTTCTGTAGCTTTGTGGTTACTTAA 59.516 38.462 0.00 0.00 0.00 1.85
1577 1665 7.012610 GGTTCTGTAGCTTTGTGGTTACTTAAA 59.987 37.037 0.00 0.00 0.00 1.52
1578 1666 8.400186 GTTCTGTAGCTTTGTGGTTACTTAAAA 58.600 33.333 0.00 0.00 0.00 1.52
1579 1667 8.149973 TCTGTAGCTTTGTGGTTACTTAAAAG 57.850 34.615 0.00 0.00 0.00 2.27
1580 1668 7.988599 TCTGTAGCTTTGTGGTTACTTAAAAGA 59.011 33.333 0.00 0.00 31.01 2.52
1581 1669 8.508883 TGTAGCTTTGTGGTTACTTAAAAGAA 57.491 30.769 0.00 0.00 31.01 2.52
1582 1670 8.958506 TGTAGCTTTGTGGTTACTTAAAAGAAA 58.041 29.630 0.00 0.00 31.01 2.52
1583 1671 9.229784 GTAGCTTTGTGGTTACTTAAAAGAAAC 57.770 33.333 0.00 0.00 31.01 2.78
1584 1672 7.832769 AGCTTTGTGGTTACTTAAAAGAAACA 58.167 30.769 0.00 0.00 31.01 2.83
1585 1673 7.973944 AGCTTTGTGGTTACTTAAAAGAAACAG 59.026 33.333 0.00 0.00 31.01 3.16
1586 1674 7.758076 GCTTTGTGGTTACTTAAAAGAAACAGT 59.242 33.333 0.00 0.00 31.01 3.55
1587 1675 9.285770 CTTTGTGGTTACTTAAAAGAAACAGTC 57.714 33.333 0.00 0.00 31.01 3.51
1588 1676 7.925043 TGTGGTTACTTAAAAGAAACAGTCA 57.075 32.000 0.00 0.00 0.00 3.41
1589 1677 8.338072 TGTGGTTACTTAAAAGAAACAGTCAA 57.662 30.769 0.00 0.00 0.00 3.18
1607 1695 0.179000 AAGTGCATGGACGAGGATCC 59.821 55.000 12.02 2.48 39.45 3.36
1614 1702 1.548081 TGGACGAGGATCCACGTAAA 58.452 50.000 32.72 22.12 44.14 2.01
1623 1711 2.199236 GATCCACGTAAAAGGCCTACG 58.801 52.381 22.05 22.05 45.93 3.51
1632 1720 5.163478 ACGTAAAAGGCCTACGATGAAGTAT 60.163 40.000 28.62 5.08 43.80 2.12
1680 1768 9.617975 CTAGAACTTGAGGAAAACAAATCATTC 57.382 33.333 0.00 0.00 0.00 2.67
1686 1774 3.826157 AGGAAAACAAATCATTCTCGCCA 59.174 39.130 0.00 0.00 0.00 5.69
1699 1787 3.795623 TCTCGCCAATAGAACAGGTAC 57.204 47.619 0.00 0.00 0.00 3.34
1760 1848 4.404073 AGATTCTCTCTAGAACCGTGCAAT 59.596 41.667 0.00 0.00 44.40 3.56
1782 1870 7.253950 GCAATAGTTGTTGGTAAAAACACACAG 60.254 37.037 0.00 0.00 39.70 3.66
1869 1958 1.522668 TTTGTTCCTGAGGCATGACG 58.477 50.000 0.00 0.00 0.00 4.35
1881 1970 5.487433 TGAGGCATGACGATTTCTTTTCTA 58.513 37.500 0.00 0.00 0.00 2.10
1968 4017 9.628500 AATCAAATTACTTAGGGGAATCTACAC 57.372 33.333 0.00 0.00 0.00 2.90
1971 4020 7.427989 AATTACTTAGGGGAATCTACACGAA 57.572 36.000 0.00 0.00 0.00 3.85
2013 4062 7.914427 AAACATCTATGTATGGTCCTACTGA 57.086 36.000 0.00 0.00 40.80 3.41
2014 4063 8.497910 AAACATCTATGTATGGTCCTACTGAT 57.502 34.615 0.00 0.00 40.80 2.90
2015 4064 8.497910 AACATCTATGTATGGTCCTACTGATT 57.502 34.615 0.00 0.00 40.80 2.57
2016 4065 8.128322 ACATCTATGTATGGTCCTACTGATTC 57.872 38.462 0.00 0.00 39.68 2.52
2017 4066 7.179338 ACATCTATGTATGGTCCTACTGATTCC 59.821 40.741 0.00 0.00 39.68 3.01
2018 4067 6.620429 TCTATGTATGGTCCTACTGATTCCA 58.380 40.000 0.00 0.00 0.00 3.53
2019 4068 7.248976 TCTATGTATGGTCCTACTGATTCCAT 58.751 38.462 0.00 0.00 41.10 3.41
2020 4069 6.770286 ATGTATGGTCCTACTGATTCCATT 57.230 37.500 0.00 0.00 39.28 3.16
2021 4070 6.575244 TGTATGGTCCTACTGATTCCATTT 57.425 37.500 0.00 0.00 39.28 2.32
2022 4071 7.684317 TGTATGGTCCTACTGATTCCATTTA 57.316 36.000 0.00 0.00 39.28 1.40
2023 4072 8.275187 TGTATGGTCCTACTGATTCCATTTAT 57.725 34.615 0.00 0.00 39.28 1.40
2024 4073 8.723365 TGTATGGTCCTACTGATTCCATTTATT 58.277 33.333 0.00 0.00 39.28 1.40
2025 4074 9.574516 GTATGGTCCTACTGATTCCATTTATTT 57.425 33.333 0.00 0.00 39.28 1.40
2035 4084 8.424133 ACTGATTCCATTTATTTATTTCCCTGC 58.576 33.333 0.00 0.00 0.00 4.85
2036 4085 8.551682 TGATTCCATTTATTTATTTCCCTGCT 57.448 30.769 0.00 0.00 0.00 4.24
2037 4086 8.423349 TGATTCCATTTATTTATTTCCCTGCTG 58.577 33.333 0.00 0.00 0.00 4.41
2038 4087 6.160576 TCCATTTATTTATTTCCCTGCTGC 57.839 37.500 0.00 0.00 0.00 5.25
2039 4088 5.898972 TCCATTTATTTATTTCCCTGCTGCT 59.101 36.000 0.00 0.00 0.00 4.24
2040 4089 6.040842 TCCATTTATTTATTTCCCTGCTGCTC 59.959 38.462 0.00 0.00 0.00 4.26
2041 4090 6.041296 CCATTTATTTATTTCCCTGCTGCTCT 59.959 38.462 0.00 0.00 0.00 4.09
2042 4091 7.231317 CCATTTATTTATTTCCCTGCTGCTCTA 59.769 37.037 0.00 0.00 0.00 2.43
2043 4092 7.807977 TTTATTTATTTCCCTGCTGCTCTAG 57.192 36.000 0.00 0.00 0.00 2.43
2288 4337 8.842358 TTTATGTAGACTTGGTCAAACCTAAG 57.158 34.615 0.00 2.97 39.58 2.18
2296 4345 6.665695 ACTTGGTCAAACCTAAGGAAGTTTA 58.334 36.000 10.78 0.00 39.58 2.01
2300 4349 7.120716 TGGTCAAACCTAAGGAAGTTTAACTT 58.879 34.615 10.38 10.38 39.19 2.66
2302 4351 8.781196 GGTCAAACCTAAGGAAGTTTAACTTAG 58.219 37.037 10.57 4.53 41.94 2.18
2319 4368 9.538508 TTTAACTTAGGACTGAACTGTAACTTC 57.461 33.333 0.00 0.00 0.00 3.01
2320 4369 6.980416 ACTTAGGACTGAACTGTAACTTCT 57.020 37.500 0.00 0.00 0.00 2.85
2330 4379 6.682746 TGAACTGTAACTTCTAAGAGCAGAG 58.317 40.000 14.60 4.11 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 2.512515 GTAGGCCTGGCAAGAGCG 60.513 66.667 22.05 0.00 43.41 5.03
154 161 1.803289 TGAGATGTCAGAGTCCGCG 59.197 57.895 0.00 0.00 0.00 6.46
170 195 3.945921 CGTAGATACAGTTCTGACCCTGA 59.054 47.826 6.83 0.00 32.93 3.86
317 348 2.555227 GGGCAGAAACAATTCTCCAGGA 60.555 50.000 0.00 0.00 44.11 3.86
474 508 0.877071 CATTTGCTGCTTCAGGACGT 59.123 50.000 0.00 0.00 30.08 4.34
506 540 1.352622 ACTGCCACCTGAACTTGGGA 61.353 55.000 0.00 0.00 33.01 4.37
540 574 0.555769 TTTGTCTCCCTGGCAAAGGT 59.444 50.000 4.16 0.00 44.28 3.50
596 640 1.337821 CTGACGAGGTTAACGTGCTC 58.662 55.000 5.36 3.07 43.97 4.26
688 732 4.832248 CACCTACACAGAAAAGATAGCCA 58.168 43.478 0.00 0.00 0.00 4.75
701 745 0.036105 CTCAGGCATGCACCTACACA 60.036 55.000 21.36 0.00 38.26 3.72
732 776 1.632046 GCCGACCATGGTGTTGTACG 61.632 60.000 25.52 18.04 0.00 3.67
845 889 2.190578 GGCGATCCTTGGGGACAG 59.809 66.667 0.00 0.00 45.43 3.51
967 1011 3.426568 GTCGGTCTTGCTGCTGGC 61.427 66.667 0.00 0.00 42.22 4.85
968 1012 3.114616 CGTCGGTCTTGCTGCTGG 61.115 66.667 0.00 0.00 0.00 4.85
1032 1077 0.529992 CGCTGTACCCCTCGGAATTC 60.530 60.000 0.00 0.00 0.00 2.17
1035 1080 2.036098 TCGCTGTACCCCTCGGAA 59.964 61.111 0.00 0.00 0.00 4.30
1329 1380 4.385358 TTCGCACTAATGAGCTCATGTA 57.615 40.909 29.34 20.11 36.56 2.29
1345 1396 9.929722 GTACAATTGTTCTAATATTGATTCGCA 57.070 29.630 17.78 0.00 34.28 5.10
1423 1510 1.282157 ACACTTTAGGATCTGCCACCC 59.718 52.381 0.00 0.00 40.02 4.61
1424 1511 2.789409 ACACTTTAGGATCTGCCACC 57.211 50.000 0.00 0.00 40.02 4.61
1430 1517 7.470286 GCGGATTAGAGTAACACTTTAGGATCT 60.470 40.741 0.00 0.00 0.00 2.75
1435 1522 5.575957 TCGCGGATTAGAGTAACACTTTAG 58.424 41.667 6.13 0.00 0.00 1.85
1455 1543 1.296056 ATACGGGTGCAGTTGTTCGC 61.296 55.000 0.00 0.00 0.00 4.70
1456 1544 0.442310 CATACGGGTGCAGTTGTTCG 59.558 55.000 0.00 0.00 0.00 3.95
1457 1545 1.803334 TCATACGGGTGCAGTTGTTC 58.197 50.000 0.00 0.00 0.00 3.18
1458 1546 1.877443 GTTCATACGGGTGCAGTTGTT 59.123 47.619 0.00 0.00 0.00 2.83
1459 1547 1.071699 AGTTCATACGGGTGCAGTTGT 59.928 47.619 0.00 0.00 0.00 3.32
1460 1548 1.464608 CAGTTCATACGGGTGCAGTTG 59.535 52.381 0.00 0.00 0.00 3.16
1461 1549 1.071699 ACAGTTCATACGGGTGCAGTT 59.928 47.619 0.00 0.00 0.00 3.16
1462 1550 0.685097 ACAGTTCATACGGGTGCAGT 59.315 50.000 0.00 0.00 0.00 4.40
1463 1551 1.078709 CACAGTTCATACGGGTGCAG 58.921 55.000 0.00 0.00 31.22 4.41
1464 1552 0.682292 TCACAGTTCATACGGGTGCA 59.318 50.000 0.00 0.00 35.65 4.57
1465 1553 1.803334 TTCACAGTTCATACGGGTGC 58.197 50.000 0.00 0.00 35.65 5.01
1466 1554 4.253685 AGAATTCACAGTTCATACGGGTG 58.746 43.478 8.44 0.00 36.44 4.61
1467 1555 4.553330 AGAATTCACAGTTCATACGGGT 57.447 40.909 8.44 0.00 0.00 5.28
1468 1556 5.902681 TCTAGAATTCACAGTTCATACGGG 58.097 41.667 8.44 0.00 0.00 5.28
1469 1557 6.796426 TCTCTAGAATTCACAGTTCATACGG 58.204 40.000 8.44 0.00 0.00 4.02
1470 1558 8.689251 TTTCTCTAGAATTCACAGTTCATACG 57.311 34.615 8.44 0.00 33.54 3.06
1474 1562 9.645059 CACTATTTCTCTAGAATTCACAGTTCA 57.355 33.333 8.44 0.00 33.54 3.18
1475 1563 9.862371 TCACTATTTCTCTAGAATTCACAGTTC 57.138 33.333 8.44 0.00 33.54 3.01
1528 1616 2.213499 CGTCATCCTAATGGAGCAACC 58.787 52.381 0.00 0.00 46.91 3.77
1529 1617 2.213499 CCGTCATCCTAATGGAGCAAC 58.787 52.381 0.00 0.00 46.91 4.17
1530 1618 1.475034 GCCGTCATCCTAATGGAGCAA 60.475 52.381 0.00 0.00 46.91 3.91
1531 1619 0.106708 GCCGTCATCCTAATGGAGCA 59.893 55.000 0.00 0.00 46.91 4.26
1532 1620 0.946221 CGCCGTCATCCTAATGGAGC 60.946 60.000 0.00 0.00 46.91 4.70
1533 1621 0.319900 CCGCCGTCATCCTAATGGAG 60.320 60.000 0.00 0.00 46.91 3.86
1535 1623 0.179056 AACCGCCGTCATCCTAATGG 60.179 55.000 0.00 0.00 33.42 3.16
1536 1624 1.202533 AGAACCGCCGTCATCCTAATG 60.203 52.381 0.00 0.00 0.00 1.90
1537 1625 1.120530 AGAACCGCCGTCATCCTAAT 58.879 50.000 0.00 0.00 0.00 1.73
1538 1626 0.174845 CAGAACCGCCGTCATCCTAA 59.825 55.000 0.00 0.00 0.00 2.69
1539 1627 0.968901 ACAGAACCGCCGTCATCCTA 60.969 55.000 0.00 0.00 0.00 2.94
1540 1628 0.968901 TACAGAACCGCCGTCATCCT 60.969 55.000 0.00 0.00 0.00 3.24
1541 1629 0.527817 CTACAGAACCGCCGTCATCC 60.528 60.000 0.00 0.00 0.00 3.51
1542 1630 1.146358 GCTACAGAACCGCCGTCATC 61.146 60.000 0.00 0.00 0.00 2.92
1543 1631 1.153628 GCTACAGAACCGCCGTCAT 60.154 57.895 0.00 0.00 0.00 3.06
1544 1632 1.812686 AAGCTACAGAACCGCCGTCA 61.813 55.000 0.00 0.00 0.00 4.35
1545 1633 0.669625 AAAGCTACAGAACCGCCGTC 60.670 55.000 0.00 0.00 0.00 4.79
1546 1634 0.949105 CAAAGCTACAGAACCGCCGT 60.949 55.000 0.00 0.00 0.00 5.68
1547 1635 0.949105 ACAAAGCTACAGAACCGCCG 60.949 55.000 0.00 0.00 0.00 6.46
1548 1636 0.517316 CACAAAGCTACAGAACCGCC 59.483 55.000 0.00 0.00 0.00 6.13
1549 1637 0.517316 CCACAAAGCTACAGAACCGC 59.483 55.000 0.00 0.00 0.00 5.68
1550 1638 1.878953 ACCACAAAGCTACAGAACCG 58.121 50.000 0.00 0.00 0.00 4.44
1551 1639 4.386711 AGTAACCACAAAGCTACAGAACC 58.613 43.478 0.00 0.00 0.00 3.62
1552 1640 7.486802 TTAAGTAACCACAAAGCTACAGAAC 57.513 36.000 0.00 0.00 0.00 3.01
1553 1641 8.508883 TTTTAAGTAACCACAAAGCTACAGAA 57.491 30.769 0.00 0.00 0.00 3.02
1554 1642 7.988599 TCTTTTAAGTAACCACAAAGCTACAGA 59.011 33.333 0.00 0.00 0.00 3.41
1555 1643 8.149973 TCTTTTAAGTAACCACAAAGCTACAG 57.850 34.615 0.00 0.00 0.00 2.74
1556 1644 8.508883 TTCTTTTAAGTAACCACAAAGCTACA 57.491 30.769 0.00 0.00 0.00 2.74
1557 1645 9.229784 GTTTCTTTTAAGTAACCACAAAGCTAC 57.770 33.333 0.00 0.00 32.26 3.58
1558 1646 8.958506 TGTTTCTTTTAAGTAACCACAAAGCTA 58.041 29.630 8.79 0.00 36.02 3.32
1559 1647 7.832769 TGTTTCTTTTAAGTAACCACAAAGCT 58.167 30.769 8.79 0.00 36.02 3.74
1560 1648 7.758076 ACTGTTTCTTTTAAGTAACCACAAAGC 59.242 33.333 8.79 0.00 36.02 3.51
1561 1649 9.285770 GACTGTTTCTTTTAAGTAACCACAAAG 57.714 33.333 8.79 3.48 36.02 2.77
1562 1650 8.794553 TGACTGTTTCTTTTAAGTAACCACAAA 58.205 29.630 8.79 0.00 36.02 2.83
1563 1651 8.338072 TGACTGTTTCTTTTAAGTAACCACAA 57.662 30.769 8.79 0.00 36.02 3.33
1564 1652 7.925043 TGACTGTTTCTTTTAAGTAACCACA 57.075 32.000 8.79 4.98 36.02 4.17
1565 1653 8.456471 ACTTGACTGTTTCTTTTAAGTAACCAC 58.544 33.333 8.79 3.12 36.02 4.16
1566 1654 8.455682 CACTTGACTGTTTCTTTTAAGTAACCA 58.544 33.333 8.79 0.00 36.02 3.67
1567 1655 7.431376 GCACTTGACTGTTTCTTTTAAGTAACC 59.569 37.037 8.79 0.00 36.02 2.85
1568 1656 7.966204 TGCACTTGACTGTTTCTTTTAAGTAAC 59.034 33.333 5.38 5.38 36.99 2.50
1569 1657 8.046294 TGCACTTGACTGTTTCTTTTAAGTAA 57.954 30.769 0.00 0.00 0.00 2.24
1570 1658 7.618502 TGCACTTGACTGTTTCTTTTAAGTA 57.381 32.000 0.00 0.00 0.00 2.24
1571 1659 6.509418 TGCACTTGACTGTTTCTTTTAAGT 57.491 33.333 0.00 0.00 0.00 2.24
1572 1660 6.418819 CCATGCACTTGACTGTTTCTTTTAAG 59.581 38.462 0.00 0.00 0.00 1.85
1573 1661 6.096141 TCCATGCACTTGACTGTTTCTTTTAA 59.904 34.615 0.00 0.00 0.00 1.52
1574 1662 5.592282 TCCATGCACTTGACTGTTTCTTTTA 59.408 36.000 0.00 0.00 0.00 1.52
1575 1663 4.402155 TCCATGCACTTGACTGTTTCTTTT 59.598 37.500 0.00 0.00 0.00 2.27
1576 1664 3.953612 TCCATGCACTTGACTGTTTCTTT 59.046 39.130 0.00 0.00 0.00 2.52
1577 1665 3.316308 GTCCATGCACTTGACTGTTTCTT 59.684 43.478 0.00 0.00 0.00 2.52
1578 1666 2.880890 GTCCATGCACTTGACTGTTTCT 59.119 45.455 0.00 0.00 0.00 2.52
1579 1667 2.349817 CGTCCATGCACTTGACTGTTTC 60.350 50.000 9.57 0.00 0.00 2.78
1580 1668 1.603802 CGTCCATGCACTTGACTGTTT 59.396 47.619 9.57 0.00 0.00 2.83
1581 1669 1.202639 TCGTCCATGCACTTGACTGTT 60.203 47.619 9.57 0.00 0.00 3.16
1582 1670 0.392706 TCGTCCATGCACTTGACTGT 59.607 50.000 9.57 0.00 0.00 3.55
1583 1671 1.073964 CTCGTCCATGCACTTGACTG 58.926 55.000 9.57 4.82 0.00 3.51
1584 1672 0.036952 CCTCGTCCATGCACTTGACT 60.037 55.000 9.57 0.00 0.00 3.41
1585 1673 0.037326 TCCTCGTCCATGCACTTGAC 60.037 55.000 0.00 0.00 0.00 3.18
1586 1674 0.904649 ATCCTCGTCCATGCACTTGA 59.095 50.000 0.00 0.00 0.00 3.02
1587 1675 1.293924 GATCCTCGTCCATGCACTTG 58.706 55.000 0.00 0.00 0.00 3.16
1588 1676 0.179000 GGATCCTCGTCCATGCACTT 59.821 55.000 3.84 0.00 38.20 3.16
1589 1677 0.977627 TGGATCCTCGTCCATGCACT 60.978 55.000 14.23 0.00 43.20 4.40
1607 1695 2.883574 TCATCGTAGGCCTTTTACGTG 58.116 47.619 22.48 19.07 43.17 4.49
1610 1698 9.570488 CTATATACTTCATCGTAGGCCTTTTAC 57.430 37.037 12.58 1.17 0.00 2.01
1614 1702 7.450634 TGAACTATATACTTCATCGTAGGCCTT 59.549 37.037 12.58 0.00 0.00 4.35
1646 1734 4.689612 TCCTCAAGTTCTAGCTTGTTGT 57.310 40.909 9.18 0.00 44.41 3.32
1663 1751 4.082787 TGGCGAGAATGATTTGTTTTCCTC 60.083 41.667 0.00 0.00 0.00 3.71
1671 1759 6.122850 TGTTCTATTGGCGAGAATGATTTG 57.877 37.500 0.00 0.00 35.46 2.32
1672 1760 5.297776 CCTGTTCTATTGGCGAGAATGATTT 59.702 40.000 0.00 0.00 35.46 2.17
1674 1762 4.141620 ACCTGTTCTATTGGCGAGAATGAT 60.142 41.667 0.00 0.00 35.46 2.45
1680 1768 3.520290 TGTACCTGTTCTATTGGCGAG 57.480 47.619 0.00 0.00 0.00 5.03
1760 1848 6.879993 TCTCTGTGTGTTTTTACCAACAACTA 59.120 34.615 0.00 0.00 38.40 2.24
1797 1885 8.547967 AGTAACGTATGTGAATGTTTTCAGAT 57.452 30.769 0.00 4.16 45.10 2.90
1798 1886 7.956420 AGTAACGTATGTGAATGTTTTCAGA 57.044 32.000 0.00 0.00 42.41 3.27
1799 1887 9.103048 GAAAGTAACGTATGTGAATGTTTTCAG 57.897 33.333 0.00 0.00 42.41 3.02
1800 1888 8.832521 AGAAAGTAACGTATGTGAATGTTTTCA 58.167 29.630 0.00 0.00 39.54 2.69
1801 1889 9.659830 AAGAAAGTAACGTATGTGAATGTTTTC 57.340 29.630 0.00 0.00 31.24 2.29
1891 1980 4.881273 TGCTTGTTCACTGTGTGTATTCTT 59.119 37.500 7.79 0.00 34.79 2.52
1893 1982 4.035091 TGTGCTTGTTCACTGTGTGTATTC 59.965 41.667 7.79 0.00 37.81 1.75
1912 2001 8.350722 AGAAATATGATCATTTGTGATCTGTGC 58.649 33.333 14.65 4.96 43.66 4.57
1998 4047 6.575244 AAATGGAATCAGTAGGACCATACA 57.425 37.500 0.00 0.00 39.93 2.29
1999 4048 9.574516 AAATAAATGGAATCAGTAGGACCATAC 57.425 33.333 0.00 0.00 39.93 2.39
2009 4058 8.424133 GCAGGGAAATAAATAAATGGAATCAGT 58.576 33.333 0.00 0.00 0.00 3.41
2010 4059 8.645110 AGCAGGGAAATAAATAAATGGAATCAG 58.355 33.333 0.00 0.00 0.00 2.90
2011 4060 8.423349 CAGCAGGGAAATAAATAAATGGAATCA 58.577 33.333 0.00 0.00 0.00 2.57
2012 4061 7.386025 GCAGCAGGGAAATAAATAAATGGAATC 59.614 37.037 0.00 0.00 0.00 2.52
2013 4062 7.071572 AGCAGCAGGGAAATAAATAAATGGAAT 59.928 33.333 0.00 0.00 0.00 3.01
2014 4063 6.383726 AGCAGCAGGGAAATAAATAAATGGAA 59.616 34.615 0.00 0.00 0.00 3.53
2015 4064 5.898972 AGCAGCAGGGAAATAAATAAATGGA 59.101 36.000 0.00 0.00 0.00 3.41
2016 4065 6.041296 AGAGCAGCAGGGAAATAAATAAATGG 59.959 38.462 0.00 0.00 0.00 3.16
2017 4066 7.047460 AGAGCAGCAGGGAAATAAATAAATG 57.953 36.000 0.00 0.00 0.00 2.32
2018 4067 8.001292 ACTAGAGCAGCAGGGAAATAAATAAAT 58.999 33.333 0.00 0.00 0.00 1.40
2019 4068 7.346471 ACTAGAGCAGCAGGGAAATAAATAAA 58.654 34.615 0.00 0.00 0.00 1.40
2020 4069 6.900194 ACTAGAGCAGCAGGGAAATAAATAA 58.100 36.000 0.00 0.00 0.00 1.40
2021 4070 6.327626 AGACTAGAGCAGCAGGGAAATAAATA 59.672 38.462 0.00 0.00 0.00 1.40
2022 4071 5.131809 AGACTAGAGCAGCAGGGAAATAAAT 59.868 40.000 0.00 0.00 0.00 1.40
2023 4072 4.471386 AGACTAGAGCAGCAGGGAAATAAA 59.529 41.667 0.00 0.00 0.00 1.40
2024 4073 4.033709 AGACTAGAGCAGCAGGGAAATAA 58.966 43.478 0.00 0.00 0.00 1.40
2025 4074 3.647636 AGACTAGAGCAGCAGGGAAATA 58.352 45.455 0.00 0.00 0.00 1.40
2026 4075 2.476199 AGACTAGAGCAGCAGGGAAAT 58.524 47.619 0.00 0.00 0.00 2.17
2027 4076 1.944177 AGACTAGAGCAGCAGGGAAA 58.056 50.000 0.00 0.00 0.00 3.13
2028 4077 1.944177 AAGACTAGAGCAGCAGGGAA 58.056 50.000 0.00 0.00 0.00 3.97
2029 4078 1.944177 AAAGACTAGAGCAGCAGGGA 58.056 50.000 0.00 0.00 0.00 4.20
2030 4079 3.895232 TTAAAGACTAGAGCAGCAGGG 57.105 47.619 0.00 0.00 0.00 4.45
2031 4080 5.181748 ACATTTAAAGACTAGAGCAGCAGG 58.818 41.667 0.00 0.00 0.00 4.85
2032 4081 5.871524 TGACATTTAAAGACTAGAGCAGCAG 59.128 40.000 0.00 0.00 0.00 4.24
2033 4082 5.793817 TGACATTTAAAGACTAGAGCAGCA 58.206 37.500 0.00 0.00 0.00 4.41
2034 4083 6.727824 TTGACATTTAAAGACTAGAGCAGC 57.272 37.500 0.00 0.00 0.00 5.25
2035 4084 9.552114 CATTTTGACATTTAAAGACTAGAGCAG 57.448 33.333 0.00 0.00 0.00 4.24
2036 4085 9.283768 TCATTTTGACATTTAAAGACTAGAGCA 57.716 29.630 0.00 0.00 0.00 4.26
2084 4133 9.362151 ACCTAGAACTTCAAATATTTTGGAACA 57.638 29.630 0.00 0.00 0.00 3.18
2224 4273 8.792633 TCCAGAACACCAAATTAGTTTCATTAG 58.207 33.333 0.00 0.00 0.00 1.73
2237 4286 3.025322 ACCAACATCCAGAACACCAAA 57.975 42.857 0.00 0.00 0.00 3.28
2268 4317 5.479124 TCCTTAGGTTTGACCAAGTCTAC 57.521 43.478 0.00 0.00 41.95 2.59
2269 4318 5.605488 ACTTCCTTAGGTTTGACCAAGTCTA 59.395 40.000 0.00 0.00 41.95 2.59
2270 4319 4.412528 ACTTCCTTAGGTTTGACCAAGTCT 59.587 41.667 0.00 0.00 41.95 3.24
2288 4337 6.990939 ACAGTTCAGTCCTAAGTTAAACTTCC 59.009 38.462 0.00 0.00 39.51 3.46
2296 4345 7.362802 AGAAGTTACAGTTCAGTCCTAAGTT 57.637 36.000 0.00 0.00 30.04 2.66
2300 4349 7.094291 GCTCTTAGAAGTTACAGTTCAGTCCTA 60.094 40.741 0.00 0.00 30.04 2.94
2302 4351 5.865013 GCTCTTAGAAGTTACAGTTCAGTCC 59.135 44.000 0.00 0.00 30.04 3.85
2306 4355 6.294787 CCTCTGCTCTTAGAAGTTACAGTTCA 60.295 42.308 0.00 0.00 30.04 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.